Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	THCA.cormatrix.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	THCA.geneheatmap.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	THCA.geneheatmaptopgenes.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	THCA.silfig.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	THCA.bestclus.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	THCA.allclusters.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	THCA.subclassmarkers.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.7.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.5.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.3.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.4.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.2.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.8.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.7.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.2.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.8.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.6.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.4.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.6.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.3.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.5.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.6.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.7.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.5.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.3.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.2.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.8.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.4.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_TopgenesforCluster1.expfile	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	THCA.cormatrix.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	THCA.geneheatmap.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	THCA.geneheatmaptopgenes.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	THCA.silfig.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	THCA.bestclus.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	THCA.allclusters.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	THCA.subclassmarkers.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.7.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.5.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.3.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.4.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.2.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.8.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.7.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.2.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.8.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.6.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.4.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.6.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.3.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.5.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.6.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.7.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.5.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.3.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.2.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.8.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	outputprefix.expclu.sub126.srt.4.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
GDAC_selectBestcluster3.inputallexp	THCA.uncv2.mRNAseq_RSEM_normalized_log2.txt	gdac.broadinstitute.org_THCA.mRNAseq_Preprocess.Level_4.2012072500.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	mRNAseq_Clustering_Consensus_2012072500	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_THCA.mRNAseq_Clustering_Consensus.Level_4.2012072500.0.0	yes
