# Created: Mon Sep 10 05:31:08 EDT 2012 by cgaadm_deadline
# Job: 163143    server:  http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/
# Module: AddXvarColumns urn:lsid:broadinstitute.org:cancer.genome.analysis:00282:25
# Parameters: 
#    input.maf.file = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigWithNozzleReport/BRCA/1636395/3.MutSigRun.Finished/BRCA.final_analysis_set.maf
#    output.prefix = BRCA
#    build = /xchip/cga/reference/tcga/mutation_assessor/scores_hg19_v2.0
