Clinical Features	Time to Death		AGE		GENDER		KARNOFSKY.PERFORMANCE.SCORE		HISTOLOGICAL.TYPE		PATHOLOGY.T		PATHOLOGY.N		PATHOLOGICSPREAD(M)		TUMOR.STAGE		RADIATIONS.RADIATION.REGIMENINDICATION		NEOADJUVANT.THERAPY	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	37 (13%)	248	0.81786	1	0.0044564	1	0.8599	1	0.55347	1	0.97051	1	0.67542	1	0.014728	1	0.6865	1	0.010509	1	1	1	0.80743	1
1q gain	111 (39%)	174	0.76115	1	0.51696	1	0.71474	1	0.55083	1	0.60624	1	0.74842	1	0.082452	1	0.38701	1	0.045569	1	1	1	0.17513	1
2p gain	36 (13%)	249	0.13039	1	0.062814	1	0.030733	1	0.68508	1	0.79278	1	0.067905	1	0.67573	1	0.092904	1	0.12342	1	0.67239	1	0.80346	1
2q gain	30 (11%)	255	0.19561	1	0.22797	1	0.24754	1	NA	NA	0.23757	1	0.28696	1	0.963	1	0.097779	1	0.23639	1	1	1	1	1
3p gain	9 (3%)	276	0.12574	1	0.65025	1	0.73678	1	NA	NA	0.90978	1	0.07184	1	0.62598	1	0.54744	1	0.42714	1	0.34711	1	0.62909	1
3q gain	18 (6%)	267	0.13799	1	0.49088	1	0.80899	1	NA	NA	0.96245	1	0.86357	1	0.31288	1	0.90996	1	0.55081	1	0.19431	1	0.49161	1
4p gain	21 (7%)	264	0.65072	1	0.013489	1	0.36403	1	NA	NA	0.063389	1	0.21735	1	0.85026	1	0.091253	1	0.26597	1	1	1	1	1
4q gain	8 (3%)	277	0.61683	1	0.55527	1	0.14889	1	NA	NA	7.4228e-05	0.0612	0.092674	1	0.36702	1	0.50789	1	0.64524	1	0.31496	1	1	1
5p gain	111 (39%)	174	0.52732	1	0.29867	1	0.71474	1	0.79065	1	0.26729	1	0.45727	1	0.80469	1	0.86379	1	0.97632	1	0.38292	1	0.73504	1
5q gain	36 (13%)	249	0.69605	1	0.83083	1	0.3781	1	NA	NA	0.81957	1	0.58211	1	0.64148	1	0.57614	1	0.80416	1	0.21741	1	0.083892	1
6p gain	40 (14%)	245	0.88293	1	0.64957	1	0.4946	1	0.83345	1	0.68485	1	0.51087	1	0.18809	1	0.8288	1	0.76182	1	1	1	0.63622	1
6q gain	11 (4%)	274	0.50008	1	0.090601	1	0.012939	1	NA	NA	0.99097	1	0.84011	1	0.50729	1	0.5313	1	0.44532	1	1	1	0.67435	1
7p gain	99 (35%)	186	0.24793	1	0.04937	1	0.90145	1	0.24577	1	0.44534	1	0.17691	1	0.021359	1	0.098197	1	0.047744	1	1	1	0.73014	1
7q gain	71 (25%)	214	0.90569	1	0.0036342	1	0.41005	1	0.97615	1	0.67825	1	0.34442	1	0.22596	1	0.063878	1	0.047897	1	0.32152	1	0.70206	1
8p gain	34 (12%)	251	0.21112	1	0.0012309	1	0.14194	1	NA	NA	0.86501	1	0.70089	1	1	1	0.31516	1	0.98083	1	0.65867	1	0.19733	1
8q gain	89 (31%)	196	0.89884	1	0.00045585	0.375	0.20195	1	0.37008	1	0.44294	1	0.89186	1	0.42834	1	0.31575	1	0.57231	1	0.76055	1	0.72187	1
9p gain	7 (2%)	278	0.20711	1	0.29707	1	0.25357	1	NA	NA	0.99333	1	0.33758	1	0.49896	1	0.47363	1	1	1	1	1	0.59944	1
9q gain	3 (1%)	282	0.059053	1	0.22522	1	1	1	NA	NA	0.99999	1	0.70663	1	1	1	0.62922	1	1	1	1	1	1	1
10p gain	32 (11%)	253	0.92997	1	0.17002	1	0.25968	1	0.97701	1	0.23383	1	0.55724	1	0.21442	1	0.89408	1	0.62558	1	0.37372	1	0.79784	1
10q gain	19 (7%)	266	0.99695	1	0.60171	1	0.34321	1	NA	NA	0.11024	1	0.46794	1	0.50022	1	0.38715	1	0.59396	1	1	1	0.74816	1
11p gain	23 (8%)	262	0.73108	1	0.10379	1	0.38331	1	NA	NA	0.7033	1	0.68128	1	0.51999	1	1	1	0.45496	1	1	1	0.76112	1
11q gain	34 (12%)	251	0.48015	1	0.00030165	0.249	0.065801	1	0.70108	1	0.77071	1	0.56773	1	0.70389	1	0.56008	1	0.23252	1	0.65867	1	1	1
12p gain	39 (14%)	246	0.86906	1	0.0033849	1	0.60459	1	NA	NA	0.7041	1	0.14202	1	0.070417	1	1	1	0.04558	1	1	1	0.81223	1
12q gain	31 (11%)	254	0.74349	1	0.0009804	0.806	0.44812	1	NA	NA	0.78026	1	0.13445	1	0.14058	1	0.73458	1	0.070406	1	0.37323	1	0.79428	1
13q gain	15 (5%)	270	0.56882	1	0.52502	1	1	1	NA	NA	0.98344	1	0.11226	1	0.42446	1	0.13699	1	0.53171	1	0.51254	1	0.48081	1
14q gain	33 (12%)	252	0.16932	1	0.18907	1	0.26893	1	0.7766	1	0.052793	1	0.62817	1	0.55219	1	0.70224	1	0.87903	1	1	1	0.43898	1
15q gain	10 (4%)	275	0.27493	1	0.37491	1	0.75776	1	NA	NA	0.096652	1	0.66955	1	0.35145	1	0.44345	1	0.21026	1	1	1	1	1
16p gain	40 (14%)	245	0.58297	1	0.1554	1	0.86535	1	0.34203	1	0.6155	1	0.46092	1	0.60825	1	0.66884	1	0.5833	1	1	1	0.15862	1
16q gain	26 (9%)	259	0.65218	1	0.26083	1	0.41656	1	0.30225	1	0.46678	1	0.34524	1	0.51941	1	0.42006	1	0.55755	1	0.61645	1	0.56452	1
17p gain	16 (6%)	269	0.78592	1	0.63043	1	0.20224	1	0.20833	1	0.42079	1	0.90104	1	0.50839	1	0.39655	1	0.3484	1	0.029493	1	0.7171	1
17q gain	48 (17%)	237	0.21299	1	0.3439	1	1	1	0.37911	1	0.25916	1	0.028678	1	0.51829	1	0.024602	1	0.030124	1	0.049031	1	0.50623	1
18p gain	19 (7%)	266	0.57173	1	0.33951	1	0.34321	1	NA	NA	0.22824	1	0.85112	1	0.74953	1	1	1	0.92274	1	0.60031	1	0.50319	1
18q gain	14 (5%)	271	0.46209	1	0.20368	1	0.4217	1	NA	NA	0.076491	1	0.8859	1	0.79775	1	0.52698	1	0.86704	1	0.48798	1	0.23929	1
19p gain	4 (1%)	281	0.98543	1	0.6051	1	0.62728	1	NA	NA	0.99268	1	0.48539	1	0.34215	1	0.24549	1	0.16444	1	1	1	0.4821	1
19q gain	11 (4%)	274	0.7809	1	0.6801	1	0.5559	1	NA	NA	0.99296	1	0.17163	1	0.90771	1	0.28808	1	0.72959	1	1	1	0.38085	1
20p gain	42 (15%)	243	0.86097	1	0.31801	1	1	1	0.6084	1	0.79146	1	0.35012	1	0.44416	1	0.71545	1	0.38042	1	0.41629	1	0.058574	1
20q gain	49 (17%)	236	0.73033	1	0.16346	1	0.52899	1	0.15313	1	0.76811	1	0.12727	1	0.92407	1	0.46969	1	0.70058	1	0.70456	1	0.076579	1
21q gain	26 (9%)	259	0.50102	1	0.58025	1	0.14747	1	NA	NA	0.6446	1	0.65851	1	0.61001	1	0.42006	1	0.93427	1	1	1	0.24954	1
22q gain	13 (5%)	272	0.47874	1	0.088638	1	1	1	NA	NA	0.45548	1	0.20769	1	0.071616	1	0.88132	1	0.40466	1	0.46228	1	0.11511	1
Xq gain	14 (5%)	271	0.35928	1	0.23684	1	0.17865	1	NA	NA	0.69523	1	0.34465	1	0.9284	1	0.77882	1	0.90763	1	1	1	0.45088	1
1p loss	22 (8%)	263	0.2228	1	0.82492	1	0.11776	1	NA	NA	0.90186	1	0.68128	1	0.86149	1	0.33396	1	0.04418	1	1	1	0.54723	1
1q loss	10 (4%)	275	4.1092e-06	0.00339	0.46833	1	0.52093	1	NA	NA	0.59049	1	0.55264	1	0.22902	1	1	1	0.076491	1	0.37786	1	1	1
2p loss	3 (1%)	282	NA	NA	NA	NA	1	1	NA	NA	0.99783	1	1	1	1	1	0.62922	1	1	1	1	1	0.38893	1
3p loss	56 (20%)	229	0.87369	1	0.69399	1	0.76552	1	0.02501	1	0.91698	1	0.69901	1	0.47871	1	0.1582	1	0.0042352	1	0.72423	1	0.53398	1
3q loss	30 (11%)	255	0.87207	1	0.7165	1	0.44138	1	0.053261	1	0.99568	1	0.48137	1	0.63305	1	0.59849	1	0.23058	1	1	1	0.78847	1
4p loss	26 (9%)	259	0.46247	1	0.025614	1	0.10295	1	0.72263	1	0.66569	1	0.32885	1	0.27937	1	0.6504	1	0.4805	1	0.33616	1	0.56452	1
4q loss	31 (11%)	254	0.51618	1	0.046033	1	0.012585	1	0.98399	1	0.95722	1	0.14396	1	0.0068509	1	0.54236	1	0.060171	1	0.15702	1	0.79428	1
5p loss	6 (2%)	279	0.91788	1	0.17659	1	0.41857	1	NA	NA	0.46229	1	0.56781	1	0.84061	1	0.40394	1	0.44863	1	1	1	0.22454	1
5q loss	38 (13%)	247	0.59116	1	0.06339	1	0.013551	1	NA	NA	0.10074	1	0.83372	1	0.065557	1	0.72665	1	0.35919	1	1	1	0.32759	1
6p loss	24 (8%)	261	0.3538	1	0.18175	1	0.016985	1	NA	NA	0.4212	1	0.79839	1	0.69033	1	0.37326	1	0.68785	1	1	1	1	1
6q loss	64 (22%)	221	0.96236	1	0.50213	1	0.32199	1	0.017375	1	0.63174	1	0.29024	1	0.47164	1	0.46741	1	0.51528	1	0.73931	1	1	1
7p loss	10 (4%)	275	0.81547	1	0.23701	1	1	1	NA	NA	0.44526	1	1	1	0.28424	1	0.44345	1	0.23694	1	0.37786	1	1	1
7q loss	11 (4%)	274	0.71993	1	0.19311	1	0.5559	1	NA	NA	0.020767	1	0.88981	1	0.62684	1	1	1	0.65365	1	0.40727	1	0.67435	1
8p loss	73 (26%)	212	0.59079	1	0.83863	1	1	1	0.14835	1	0.089601	1	0.13705	1	0.79561	1	0.76134	1	0.94275	1	0.74549	1	0.84997	1
8q loss	10 (4%)	275	0.30382	1	0.54986	1	0.75776	1	NA	NA	0.50018	1	0.71247	1	0.81458	1	0.096725	1	1	1	1	1	0.65059	1
9p loss	89 (31%)	196	0.0076146	1	0.064624	1	0.20195	1	0.85284	1	0.6059	1	0.23228	1	0.02591	1	0.84734	1	0.054773	1	0.55229	1	0.37507	1
9q loss	74 (26%)	211	0.32457	1	0.38094	1	1	1	0.98416	1	0.30575	1	0.3281	1	0.18467	1	0.62438	1	0.39043	1	1	1	0.85038	1
10p loss	23 (8%)	262	0.30958	1	0.61025	1	0.13208	1	NA	NA	0.33423	1	0.8963	1	0.46213	1	0.38751	1	0.90448	1	0.60925	1	1	1
10q loss	25 (9%)	260	0.33978	1	0.16664	1	1	1	NA	NA	0.0013175	1	0.33573	1	0.098526	1	1	1	0.16575	1	0.61336	1	0.77742	1
11p loss	22 (8%)	263	0.1617	1	0.0045002	1	0.82446	1	0.57249	1	0.40686	1	0.97629	1	0.067898	1	0.046989	1	0.038005	1	1	1	1	1
11q loss	18 (6%)	267	0.16028	1	0.56792	1	1	1	0.3439	1	0.53437	1	1	1	0.74064	1	0.034358	1	0.89978	1	0.19431	1	0.16357	1
12p loss	25 (9%)	260	0.35883	1	0.78617	1	0.837	1	0.57249	1	0.096274	1	0.63264	1	1	1	0.30778	1	0.53412	1	0.61336	1	0.39236	1
12q loss	18 (6%)	267	0.072721	1	0.8819	1	0.46764	1	NA	NA	0.079459	1	0.49522	1	0.37675	1	0.36593	1	0.30839	1	1	1	1	1
13q loss	64 (22%)	221	0.14694	1	0.33299	1	0.20273	1	0.027286	1	0.3255	1	0.87741	1	0.10872	1	0.45449	1	0.43245	1	1	1	0.42707	1
14q loss	27 (9%)	258	0.55985	1	0.96007	1	0.54808	1	0.66644	1	0.14252	1	0.78317	1	1	1	0.28076	1	0.79964	1	0.11403	1	0.15122	1
15q loss	63 (22%)	222	0.73383	1	0.067294	1	0.47419	1	0.88916	1	0.062707	1	0.66559	1	0.97902	1	0.93276	1	0.90826	1	1	1	0.55282	1
16p loss	22 (8%)	263	0.87627	1	0.31319	1	0.82446	1	NA	NA	0.49448	1	1	1	0.94887	1	0.0037612	1	0.059453	1	0.068848	1	0.75502	1
16q loss	40 (14%)	245	0.06545	1	0.23135	1	0.61086	1	0.8251	1	0.11315	1	0.22916	1	0.50894	1	0.10714	1	0.21898	1	0.40322	1	0.81232	1
17p loss	75 (26%)	210	0.50123	1	0.61317	1	0.68796	1	0.1556	1	0.91527	1	0.35655	1	0.35945	1	0.62044	1	0.31031	1	0.5246	1	0.70943	1
17q loss	12 (4%)	273	0.15485	1	0.95541	1	1	1	NA	NA	0.58992	1	0.49837	1	0.65036	1	0.75144	1	0.45922	1	1	1	0.089374	1
18p loss	47 (16%)	238	0.54232	1	0.034997	1	0.87407	1	0.009998	1	0.30334	1	0.28998	1	0.47862	1	0.033324	1	0.0083781	1	0.70141	1	0.65939	1
18q loss	73 (26%)	212	0.0085015	1	0.23441	1	1	1	0.52851	1	0.46368	1	0.11319	1	0.32541	1	0.22823	1	0.0035607	1	0.52609	1	0.4525	1
19p loss	80 (28%)	205	0.041732	1	0.38055	1	0.0081373	1	0.75795	1	0.50651	1	0.23214	1	0.018546	1	0.10089	1	0.12674	1	0.76148	1	0.35682	1
19q loss	44 (15%)	241	0.094829	1	0.3911	1	0.41211	1	NA	NA	0.14574	1	0.23234	1	0.37163	1	0.045836	1	0.31042	1	0.43105	1	1	1
20p loss	42 (15%)	243	0.085928	1	0.34951	1	0.86761	1	NA	NA	0.31443	1	0.1995	1	0.033503	1	0.1899	1	0.07388	1	0.6996	1	1	1
20q loss	14 (5%)	271	0.093553	1	0.27005	1	0.78927	1	NA	NA	0.29678	1	0.85037	1	0.54733	1	0.39334	1	0.37503	1	1	1	0.70197	1
21q loss	42 (15%)	243	0.85644	1	0.70127	1	0.029343	1	0.09161	1	0.59849	1	0.84399	1	0.75057	1	0.83041	1	0.75125	1	1	1	1	1
22q loss	64 (22%)	221	0.9857	1	0.12242	1	0.065505	1	0.4994	1	0.80151	1	0.78501	1	0.9194	1	0.21092	1	0.96385	1	0.49735	1	0.8454	1
Xq loss	6 (2%)	279	0.3298	1	0.099146	1	1	1	NA	NA	0.010062	1	0.56781	1	0.84061	1	0.53966	1	0.8156	1	0.026031	1	1	1