Correlate_Clinical_Cluster_nozzle Execution Log 5:21 PM Sun Oct 28, '12

Running as user: cgaadm_deadline

Correlate_Clinical_Clusters_onlysig1 cluster label file file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/BLCA/1929617/1.GDAC_mergedClustering.Finished/BLCA.mergedcluster.txt
Correlate_Clinical_Clusters_onlysig1 clinical info file file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/BLCA/1708518/1.GDAC_clinicalDataPicker.Finished/BLCA.clin.merged.picked.txt
Correlate_Clinical_Clusters_onlysig1 filter cluster smaller than 3
Correlate_Clinical_Clusters_onlysig1 figure height 5
Correlate_Clinical_Clusters_onlysig1 figure width 9
Correlate_Clinical_Clusters_onlysig1 survival legend position OUT
Correlate_Clinical_Clusters_onlysig1 pvalue cutoff 0.05
Correlate_Clinical_Clusters_onlysig1 qvalue cutoff 1
Correlate_Clinical_Clusters_onlysig1 make figure ALL
Correlate_Clinical_Clusters_onlysig1 nozzle ver Nozzle.R1
Correlate_Clinical_Clusters_onlysig1 options AGGREGRATED_CLUSTER
Execution Times:
Submitted: 17:21:10 28-10-12
Completed:
Elapsed: 00 hrs 01 mins 31 secs

step 1. Correlate_Clinical_Clusters_onlysig [id: 217493]

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00335:73
cluster label file file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/BLCA/1929617/1.GDAC_mergedClustering.Finished/BLCA.mergedcluster.txt
clinical info file file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/BLCA/1708518/1.GDAC_clinicalDataPicker.Finished/BLCA.clin.merged.picked.txt
features used ALL
filter cluster smaller than 3
output name
figure height 5
figure width 9
survival legend position OUT
pvalue cutoff 0.05
qvalue cutoff 1
make figure ALL
nozzle ver Nozzle.R1
options AGGREGRATED_CLUSTER
report title
job description
Output Files:
 D2V2.pdf
 D1V4.pdf
 D1V1.pdf
 D1V1.png
 D2V3.png
 D2V2.png
 D1V2.png
 D1V2.pdf
 supp.table3.txt
 D1V3.pdf
 D2V1.pdf
 D1V3.png
 D2V1.png
 D1V4.png
 D2V3.pdf
 D2V4.png
 supp.table5.txt
 D3V1.png
 D3V4.pdf
 D4V1.pdf
 D3V3.png
 D4V2.pdf
 D2V4.pdf
 D3V3.pdf
 D3V2.png
 D3V2.pdf
 supp.table4.txt
 D3V1.pdf
 D4V2.png
 D4V1.png
 D3V4.png
 D5V3.pdf
 D5V3.png
 D5V2.pdf
 D4V3.pdf
 D4V4.png
 D5V1.pdf
 D5V4.png
 D5V4.pdf
 D5V1.png
 D6V1.pdf
 supp.table6.txt
 D6V1.png
 D5V2.png
 D4V4.pdf
 D4V3.png
 supp.table7.txt
 supp.table9.txt
 supp.table8.txt
 D6V2.pdf
 D7V1.pdf
 D7V1.png
 D6V4.pdf
 D7V3.png
 D7V3.pdf
 D7V2.pdf
 D7V4.png
 D7V4.pdf
 D6V2.png
 D6V4.png
 D6V3.png
 D6V3.pdf
 D7V2.png
 D8V3.pdf
 D8V2.pdf
 D8V1.pdf
 supp.table10.txt
 D8V3.png
 nozzle.RData
 D8V1.png
 table.1.txt
 D8V2.png
 nozzle.html
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 17:21:13 28-10-12
Completed: 17:22:40 28-10-12
Elapsed: 00 hrs 01 mins 26 secs