Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
mutsig2cluster_new1.sample.gene.table.file	BLCA.sample_sig_gene_table.txt	gdac.broadinstitute.org_BLCA.MutSigRun2.0.Level_4.2012091300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00339:21	Correlate_Clinical_vs_Mutation_2012091300	BLCA.mutsig.cluster.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_BLCA.Correlate_Clinical_vs_Mutation.Level_4.2012091300.0.0	yes
mutsig2cluster_new1.sample.gene.table.file	BLCA.sample_sig_gene_table.txt	gdac.broadinstitute.org_BLCA.MutSigRun2.0.Level_4.2012091300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00339:21	Correlate_Clinical_vs_Mutation_2012091300	table.1.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_BLCA.Correlate_Clinical_vs_Mutation.Level_4.2012091300.0.0	yes
mutsig2cluster_new1.sample.gene.table.file	BLCA.sample_sig_gene_table.txt	gdac.broadinstitute.org_BLCA.MutSigRun2.0.Level_4.2012091300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00339:21	Correlate_Clinical_vs_Mutation_2012091300	D4V3.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_BLCA.Correlate_Clinical_vs_Mutation.Level_4.2012091300.0.0	yes
mutsig2cluster_new1.sample.gene.table.file	BLCA.sample_sig_gene_table.txt	gdac.broadinstitute.org_BLCA.MutSigRun2.0.Level_4.2012091300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00339:21	Correlate_Clinical_vs_Mutation_2012091300	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_BLCA.Correlate_Clinical_vs_Mutation.Level_4.2012091300.0.0	yes
mutsig2cluster_new1.sample.gene.table.file	BLCA.sample_sig_gene_table.txt	gdac.broadinstitute.org_BLCA.MutSigRun2.0.Level_4.2012091300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00339:21	Correlate_Clinical_vs_Mutation_2012091300	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_BLCA.Correlate_Clinical_vs_Mutation.Level_4.2012091300.0.0	yes
Correlate_Clinical_Clusters_onlysig2.clinical.info.file	BLCA.clin.merged.picked.txt	gdac.broadinstitute.org_BLCA.Clinical_Pick_Tier1.Level_4.2012091300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00339:21	Correlate_Clinical_vs_Mutation_2012091300	BLCA.mutsig.cluster.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_BLCA.Correlate_Clinical_vs_Mutation.Level_4.2012091300.0.0	yes
Correlate_Clinical_Clusters_onlysig2.clinical.info.file	BLCA.clin.merged.picked.txt	gdac.broadinstitute.org_BLCA.Clinical_Pick_Tier1.Level_4.2012091300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00339:21	Correlate_Clinical_vs_Mutation_2012091300	table.1.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_BLCA.Correlate_Clinical_vs_Mutation.Level_4.2012091300.0.0	yes
Correlate_Clinical_Clusters_onlysig2.clinical.info.file	BLCA.clin.merged.picked.txt	gdac.broadinstitute.org_BLCA.Clinical_Pick_Tier1.Level_4.2012091300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00339:21	Correlate_Clinical_vs_Mutation_2012091300	D4V3.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_BLCA.Correlate_Clinical_vs_Mutation.Level_4.2012091300.0.0	yes
Correlate_Clinical_Clusters_onlysig2.clinical.info.file	BLCA.clin.merged.picked.txt	gdac.broadinstitute.org_BLCA.Clinical_Pick_Tier1.Level_4.2012091300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00339:21	Correlate_Clinical_vs_Mutation_2012091300	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_BLCA.Correlate_Clinical_vs_Mutation.Level_4.2012091300.0.0	yes
Correlate_Clinical_Clusters_onlysig2.clinical.info.file	BLCA.clin.merged.picked.txt	gdac.broadinstitute.org_BLCA.Clinical_Pick_Tier1.Level_4.2012091300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00339:21	Correlate_Clinical_vs_Mutation_2012091300	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_BLCA.Correlate_Clinical_vs_Mutation.Level_4.2012091300.0.0	yes
