# Created: Fri Oct 05 18:02:17 EDT 2012 by cgaadm_deadline
# Job: 177293    server:  http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/
# Module: ProcessCoverageForMutSig urn:lsid:broadinstitute.org:cancer.genome.analysis:00188:77
# Parameters: 
#    coverage_prepare_file = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/BRCA/1780791/0.MutSigPreprocess.Finished/BRCA.coverage.prepare.txt
#    patient_list = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/BRCA/1780791/0.MutSigPreprocess.Finished/BRCA.patients.txt
#    mutation_list = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/BRCA/1780791/0.MutSigPreprocess.Finished/BRCA.maf
