Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	newbase	is_coding	is_flank	is_indel	is_ins	is_del	is_missense	is_nonsense	is_splice	is_silent	context_orig	context65	categ	categ_ignoring_null_categ	gene_idx	pat_idx	n_cos
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-A6-3808	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	9	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-3530	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	24	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-3673	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	47	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-3695	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	57	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-3715	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	60	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-3818	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	64	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-3837	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	69	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-3844	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	71	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-3848	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	74	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-3851	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	76	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3852-01A-01W-0900-09	TCGA-AA-3852-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35C	p.G12A	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-3852	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	G	G	G	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	77	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3854-01A-01W-0900-09	TCGA-AA-3854-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-3854	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	78	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-3864	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	83	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3870-01A-01W-0995-10	TCGA-AA-3870-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-3870	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	87	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-3930	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	91	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3939-01A-01W-0995-10	TCGA-AA-3939-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-3939	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	92	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-3941	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	93	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-3994	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	112	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-A01I	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	133	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-A01K	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	134	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01X-01A-21W-A096-10	TCGA-AA-A01X-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-A01X	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	141	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-A01Z	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	142	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-A029	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	145	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-A02O	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	149	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-A02Y	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	151	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-A03F	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	152	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3726-01	TCGA-AG-3726-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AG-3726	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	183	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3878-01	TCGA-AG-3878-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AG-3878	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	185	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3887-01	TCGA-AG-3887-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AG-3887	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	189	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-4005-01	TCGA-AG-4005-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AG-4005	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	201	14604
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A020-01	TCGA-AG-A020-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AG-A020	Broad	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	217	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	COAD-A6-2683	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	7	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	COAD-AA-3520	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	16	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3532-01A-01W-0831-10	TCGA-AA-3532-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	COAD-AA-3532	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	26	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	COAD-AA-3548	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	32	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	COAD-AA-3558	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	39	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	COAD-AA-3560	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	40	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	COAD-AA-3561	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	41	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	COAD-AA-A00A	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	114	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	COAD-AA-A00K	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	119	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	COAD-AA-A00Q	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	123	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35C	p.G12A	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	COAD-AA-A00W	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	G	G	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	126	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01F-01A-01W-A005-10	TCGA-AA-A01F-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	COAD-AA-A01F	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	131	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AF-2691	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	157	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2692-01A-01W-0831-10	TCGA-AF-2692-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AF-2692	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	158	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AG-3575	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	162	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3580-01A-01W-0831-10	TCGA-AG-3580-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AG-3580	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	164	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AG-3583	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	167	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3586-01A-02W-0831-10	TCGA-AG-3586-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AG-3586	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	169	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3594-01A-02W-0831-10	TCGA-AG-3594-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AG-3594	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	172	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35C	p.G12A	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AG-3598	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	G	G	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	173	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AG-3599	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	174	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3602-01A-02W-0833-10	TCGA-AG-3602-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AG-3602	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	177	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AG-A008	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	206	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AG-A00C	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	207	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_033360	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AG-A00Y	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	209	14604
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-A015-01A-01W-A005-10	TCGA-AG-A015-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AG-A015	Baylor	Missense_Mutation	SNP	25289551	25289551	KRAS	12	C	C	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	212	14604
KRAS	3845	broad.mit.edu	36	12	25289552	25289552	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3696-01A-01W-0900-09	TCGA-AA-3696-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G34T	p.G12C	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1 	.	.	COAD-AA-3696	Broad	Missense_Mutation	SNP	25289552	25289552	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	21	21	2	2	8321	58	14364
KRAS	3845	broad.mit.edu	36	12	25289552	25289552	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G34A	p.G12S	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1 	.	.	COAD-AA-3814	Broad	Missense_Mutation	SNP	25289552	25289552	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	21	21	2	2	8321	63	14364
KRAS	3845	broad.mit.edu	36	12	25289552	25289552	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G34T	p.G12C	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1 	.	.	COAD-AA-A02W	Broad	Missense_Mutation	SNP	25289552	25289552	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	21	21	2	2	8321	150	14364
KRAS	3845	broad.mit.edu	36	12	25289552	25289552	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A03J-01A-21W-A096-10	TCGA-AA-A03J-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G34T	p.G12C	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1 	.	.	COAD-AA-A03J	Broad	Missense_Mutation	SNP	25289552	25289552	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	21	21	2	2	8321	153	14364
KRAS	3845	broad.mit.edu	36	12	25289552	25289552	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3896-01	TCGA-AG-3896-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004985	exon2	c.G34T	p.G12C	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1	.	.	READ-AG-3896	Broad	Missense_Mutation	SNP	25289552	25289552	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	21	21	2	2	8321	194	14364
KRAS	3845	broad.mit.edu	36	12	25289552	25289552	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3999-01	TCGA-AG-3999-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004985	exon2	c.G34A	p.G12S	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1	.	.	READ-AG-3999	Broad	Missense_Mutation	SNP	25289552	25289552	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	21	21	2	2	8321	199	14364
KRAS	3845	broad.mit.edu	36	12	25289551	25289552	+	Missense_Mutation	DNP	CC	AA	AA	novel		TCGA-AG-4008-01	TCGA-AG-4008-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004985	exon2	c.34_35TT	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	.	READ-AG-4008	Broad	Missense_Mutation	DNP	25289551	25289552	KRAS	12	CC	AA	AA	AA	1	0	0	0	0	1	0	0	0	18	18	2	2	8321	203	14364
KRAS	3845	broad.mit.edu	36	12	25289552	25289552	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A014-01	TCGA-AG-A014-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	SOLID			Illumina	NM_004985	exon2	c.G34A	p.G12S	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1	.	.	READ-AG-A014	Baylor+Broad	Missense_Mutation	SNP	25289552	25289552	KRAS	12	C	C	T	T	1	0	0	0	0	1	0	0	0	21	21	2	2	8321	211	14364
KRAS	3845	broad.mit.edu	36	12	25289552	25289552	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A032-01	TCGA-AG-A032-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004985	exon2	c.G34T	p.G12C	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1	.	.	READ-AG-A032	Broad	Missense_Mutation	SNP	25289552	25289552	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	21	21	2	2	8321	223	14364
KRAS	3845	hgsc.bcm.edu	36	12	25289552	25289552	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon2	c.G34T	p.G12C	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1	.	.	COAD-AA-3522	Baylor	Missense_Mutation	SNP	25289552	25289552	KRAS	12	C	C	A	A	1	0	0	0	0	1	0	0	0	21	21	2	2	8321	18	14364
KRAS	3845	hgsc.bcm.edu	36	12	25289552	25289552	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G34C	p.G12R	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1	.	.	COAD-AA-3556	Baylor	Missense_Mutation	SNP	25289552	25289552	KRAS	12	C	C	G	G	1	0	0	0	0	1	0	0	0	21	21	2	2	8321	38	14364
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3664-01A-01W-0900-09	TCGA-AA-3664-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0 	.	.	COAD-AA-3664	Broad	Missense_Mutation	SNP	140099605	140099605	BRAF	7	A	T	T	T	1	0	0	0	0	1	0	0	0	6	6	3	3	1471	43	10508
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0 	.	.	COAD-AA-3684	Broad	Missense_Mutation	SNP	140099605	140099605	BRAF	7	A	T	T	T	1	0	0	0	0	1	0	0	0	6	6	3	3	1471	52	10508
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0 	.	.	COAD-AA-3715	Broad	Missense_Mutation	SNP	140099605	140099605	BRAF	7	A	T	T	T	1	0	0	0	0	1	0	0	0	6	6	3	3	1471	60	10508
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0 	.	.	COAD-AA-3821	Broad	Missense_Mutation	SNP	140099605	140099605	BRAF	7	A	T	T	T	1	0	0	0	0	1	0	0	0	6	6	3	3	1471	66	10508
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0 	.	.	COAD-AA-3833	Broad	Missense_Mutation	SNP	140099605	140099605	BRAF	7	A	T	T	T	1	0	0	0	0	1	0	0	0	6	6	3	3	1471	68	10508
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3877-01A-01W-0995-10	TCGA-AA-3877-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0 	.	.	COAD-AA-3877	Broad	Missense_Mutation	SNP	140099605	140099605	BRAF	7	A	T	T	T	1	0	0	0	0	1	0	0	0	6	6	3	3	1471	90	10508
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0 	.	.	COAD-AA-3947	Broad	Missense_Mutation	SNP	140099605	140099605	BRAF	7	A	T	T	T	1	0	0	0	0	1	0	0	0	6	6	3	3	1471	94	10508
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0 	.	.	COAD-AA-3949	Broad	Missense_Mutation	SNP	140099605	140099605	BRAF	7	A	T	T	T	1	0	0	0	0	1	0	0	0	6	6	3	3	1471	95	10508
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0 	.	.	COAD-AA-3966	Broad	Missense_Mutation	SNP	140099605	140099605	BRAF	7	A	T	T	T	1	0	0	0	0	1	0	0	0	6	6	3	3	1471	99	10508
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0 	.	.	COAD-AA-A01D	Broad	Missense_Mutation	SNP	140099605	140099605	BRAF	7	A	T	T	T	1	0	0	0	0	1	0	0	0	6	6	3	3	1471	130	10508
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01P-01A-21W-A096-10	TCGA-AA-A01P-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0 	.	.	COAD-AA-A01P	Broad	Missense_Mutation	SNP	140099605	140099605	BRAF	7	A	T	T	T	1	0	0	0	0	1	0	0	0	6	6	3	3	1471	135	10508
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0 	.	.	COAD-AA-A022	Broad	Missense_Mutation	SNP	140099605	140099605	BRAF	7	A	T	T	T	1	0	0	0	0	1	0	0	0	6	6	3	3	1471	143	10508
BRAF	673	hgsc.bcm.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0	.	.	COAD-A6-2672	Baylor	Missense_Mutation	SNP	140099605	140099605	BRAF	7	A	A	T	T	1	0	0	0	0	1	0	0	0	6	6	3	3	1471	2	10508
BRAF	673	hgsc.bcm.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2676-01A-01W-0833-10	TCGA-A6-2676-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0	.	.	COAD-A6-2676	Baylor	Missense_Mutation	SNP	140099605	140099605	BRAF	7	A	A	T	T	1	0	0	0	0	1	0	0	0	6	6	3	3	1471	4	10508
BRAF	673	hgsc.bcm.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0	.	.	COAD-AA-3516	Baylor	Missense_Mutation	SNP	140099605	140099605	BRAF	7	A	A	T	T	1	0	0	0	0	1	0	0	0	6	6	3	3	1471	12	10508
BRAF	673	hgsc.bcm.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3525-01A-02W-0833-10	TCGA-AA-3525-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0	.	.	COAD-AA-3525	Baylor	Missense_Mutation	SNP	140099605	140099605	BRAF	7	A	A	T	T	1	0	0	0	0	1	0	0	0	6	6	3	3	1471	20	10508
BRAF	673	hgsc.bcm.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0	.	.	COAD-AA-3543	Baylor	Missense_Mutation	SNP	140099605	140099605	BRAF	7	A	A	T	T	1	0	0	0	0	1	0	0	0	6	6	3	3	1471	30	10508
BRAF	673	hgsc.bcm.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0	.	.	COAD-AA-A00D	Baylor	Missense_Mutation	SNP	140099605	140099605	BRAF	7	A	A	T	T	1	0	0	0	0	1	0	0	0	6	6	3	3	1471	115	10508
BRAF	673	hgsc.bcm.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00J-01A-02W-A005-10	TCGA-AA-A00J-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0	.	.	COAD-AA-A00J	Baylor	Missense_Mutation	SNP	140099605	140099605	BRAF	7	A	A	T	T	1	0	0	0	0	1	0	0	0	6	6	3	3	1471	118	10508
BRAF	673	hgsc.bcm.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0	.	.	READ-AG-3578	Baylor	Missense_Mutation	SNP	140099605	140099605	BRAF	7	A	A	T	T	1	0	0	0	0	1	0	0	0	6	6	3	3	1471	163	10508
KRAS	3845	broad.mit.edu	36	12	25289548	25289548	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004985	exon2	c.G38A	p.G13D	KRAS,lung,NS,Substitution - Missense,-1 	.	.	COAD-AA-3680	Broad	Missense_Mutation	SNP	25289548	25289548	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	26	26	2	2	8321	50	2258
KRAS	3845	broad.mit.edu	36	12	25289548	25289548	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3842-01A-01W-0995-10	TCGA-AA-3842-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004985	exon2	c.G38A	p.G13D	KRAS,lung,NS,Substitution - Missense,-1 	.	.	COAD-AA-3842	Broad	Missense_Mutation	SNP	25289548	25289548	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	26	26	2	2	8321	70	2258
KRAS	3845	broad.mit.edu	36	12	25289548	25289548	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00N-01A-02W-A00E-09	TCGA-AA-A00N-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004985	exon2	c.G38A	p.G13D	KRAS,lung,NS,Substitution - Missense,-1 	.	.	COAD-AA-A00N	Broad	Missense_Mutation	SNP	25289548	25289548	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	26	26	2	2	8321	121	2258
KRAS	3845	broad.mit.edu	36	12	25289548	25289548	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004985	exon2	c.G38A	p.G13D	KRAS,lung,NS,Substitution - Missense,-1 	.	.	COAD-AA-A01R	Broad	Missense_Mutation	SNP	25289548	25289548	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	26	26	2	2	8321	137	2258
KRAS	3845	broad.mit.edu	36	12	25289548	25289548	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3727-01	TCGA-AG-3727-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004985	exon2	c.G38A	p.G13D	KRAS,lung,NS,Substitution - Missense,-1	.	.	READ-AG-3727	Broad	Missense_Mutation	SNP	25289548	25289548	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	26	26	2	2	8321	184	2258
KRAS	3845	broad.mit.edu	36	12	25289548	25289548	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004985	exon2	c.G38A	p.G13D	KRAS,lung,NS,Substitution - Missense,-1	.	.	READ-AG-3902	Broad	Missense_Mutation	SNP	25289548	25289548	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	26	26	2	2	8321	197	2258
KRAS	3845	broad.mit.edu	36	12	25289548	25289548	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A01W-01	TCGA-AG-A01W-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004985	exon2	c.G38A	p.G13D	KRAS,lung,NS,Substitution - Missense,-1	.	.	READ-AG-A01W	Broad	Missense_Mutation	SNP	25289548	25289548	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	26	26	2	2	8321	215	2258
KRAS	3845	hgsc.bcm.edu	36	12	25289548	25289548	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2689-01A-01W-0831-10	TCGA-AF-2689-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon2	c.G38A	p.G13D	KRAS,lung,NS,Substitution - Missense,-1	.	.	READ-AF-2689	Baylor	Missense_Mutation	SNP	25289548	25289548	KRAS	12	C	C	T	T	1	0	0	0	0	1	0	0	0	26	26	2	2	8321	156	2258
KRAS	3845	hgsc.bcm.edu	36	12	25289548	25289548	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon2	c.G38A	p.G13D	KRAS,lung,NS,Substitution - Missense,-1	.	.	READ-AG-3581	Baylor	Missense_Mutation	SNP	25289548	25289548	KRAS	12	C	C	T	T	1	0	0	0	0	1	0	0	0	26	26	2	2	8321	165	2258
KRAS	3845	hgsc.bcm.edu	36	12	25289548	25289548	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3605-01A-01W-0833-10	TCGA-AG-3605-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon2	c.G38A	p.G13D	KRAS,lung,NS,Substitution - Missense,-1	.	.	READ-AG-3605	Baylor	Missense_Mutation	SNP	25289548	25289548	KRAS	12	C	C	T	T	1	0	0	0	0	1	0	0	0	26	26	2	2	8321	178	2258
IDH1	3417	hgsc.bcm.edu	36	2	208821358	208821358	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_005896	exon4	c.C394T	p.R132C	IDH1,large_intestine,NS,Substitution - Missense,0	.	.	COAD-AA-3555	Baylor	Missense_Mutation	SNP	208821358	208821358	IDH1	2	G	G	A	A	1	0	0	0	0	1	0	0	0	37	37	1	1	7389	37	1492
NRAS	4893	broad.mit.edu	36	1	115058053	115058053	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3666-01A-02W-0900-09	TCGA-AA-3666-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002524	exon3	c.C181A	p.Q61K	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-3666	Broad	Missense_Mutation	SNP	115058053	115058053	NRAS	1	G	T	T	T	1	0	0	0	0	1	0	0	0	48	48	2	2	10491	44	1298
NRAS	4893	broad.mit.edu	36	1	115058052	115058052	+	Missense_Mutation	SNP	T	A	A	rs11554290	byHapMap	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002524	exon3	c.A182T	p.Q61L	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-1 	.	.	COAD-AA-3819	Broad	Missense_Mutation	SNP	115058052	115058052	NRAS	1	T	A	A	A	1	0	0	0	0	1	0	0	0	63	63	3	3	10491	65	1298
NRAS	4893	broad.mit.edu	36	1	115058053	115058053	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3976-01A-01W-0995-10	TCGA-AA-3976-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002524	exon3	c.C181A	p.Q61K	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-3976	Broad	Missense_Mutation	SNP	115058053	115058053	NRAS	1	G	T	T	T	1	0	0	0	0	1	0	0	0	48	48	2	2	10491	104	1298
NRAS	4893	broad.mit.edu	36	1	115058052	115058052	+	Missense_Mutation	SNP	T	C	C	rs11554290	by-hapmap	TCGA-AG-3892-01	TCGA-AG-3892-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002524	exon3	c.A182G	p.Q61R	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-1	.	.	READ-AG-3892	Broad	Missense_Mutation	SNP	115058052	115058052	NRAS	1	T	C	C	C	1	0	0	0	0	1	0	0	0	63	63	3	3	10491	191	1298
NRAS	4893	broad.mit.edu	36	1	115058053	115058053	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3894-01	TCGA-AG-3894-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002524	exon3	c.C181A	p.Q61K	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AG-3894	Broad	Missense_Mutation	SNP	115058053	115058053	NRAS	1	G	T	T	T	1	0	0	0	0	1	0	0	0	48	48	2	2	10491	193	1298
NRAS	4893	broad.mit.edu	36	1	115058053	115058053	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A01L-01	TCGA-AG-A01L-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002524	exon3	c.C181A	p.Q61K	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AG-A01L	Baylor+Broad	Missense_Mutation	SNP	115058053	115058053	NRAS	1	G	G	T	T	1	0	0	0	0	1	0	0	0	48	48	2	2	10491	214	1298
NRAS	4893	hgsc.bcm.edu	36	1	115058052	115058052	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002524	exon3	c.A182T	p.Q61L	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-1	.	.	COAD-A6-2678	Baylor	Missense_Mutation	SNP	115058052	115058052	NRAS	1	T	T	A	A	1	0	0	0	0	1	0	0	0	63	63	3	3	10491	6	1298
NRAS	4893	hgsc.bcm.edu	36	1	115058053	115058053	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3549-01A-02W-0831-10	TCGA-AA-3549-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002524	exon3	c.C181A	p.Q61K	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	COAD-AA-3549	Baylor	Missense_Mutation	SNP	115058053	115058053	NRAS	1	G	G	T	T	1	0	0	0	0	1	0	0	0	48	48	2	2	10491	33	1298
NRAS	4893	hgsc.bcm.edu	36	1	115058053	115058053	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002524	exon3	c.C181A	p.Q61K	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	COAD-AA-A00F	Baylor	Missense_Mutation	SNP	115058053	115058053	NRAS	1	G	G	T	T	1	0	0	0	0	1	0	0	0	48	48	2	2	10491	117	1298
NRAS	4893	broad.mit.edu	36	1	115058051	115058051	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AF-3913-01	TCGA-AF-3913-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002524	exon3	c.A183C	p.Q61H	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-2	.	.	READ-AF-3913	Broad	Missense_Mutation	SNP	115058051	115058051	NRAS	1	T	G	G	G	1	0	0	0	0	1	0	0	0	56	56	3	3	10491	160	1295
TP53	7157	broad.mit.edu	36	17	7518263	7518263	+	Missense_Mutation	SNP	C	T	T	rs11540652	by-hapmap	TCGA-AG-A01L-01	TCGA-AG-A01L-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon7	c.G743A	p.R248Q	TP53,haematopoietic_and_lymphoid_tissue,lymph_node,Substitution - Missense,0	.	.	READ-AG-A01L	Broad	Missense_Mutation	SNP	7518263	7518263	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	23	23	1	1	16182	214	1038
TP53	7157	broad.mit.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon7	c.C742T	p.R248W	TP53,haematopoietic_and_lymphoid_tissue,lymph_node,Substitution - Missense,+1 	.	.	COAD-A6-3810	Broad	Missense_Mutation	SNP	7518264	7518264	TP53	17	G	A	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	16182	10	1005
TP53	7157	broad.mit.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon7	c.C742T	p.R248W	TP53,haematopoietic_and_lymphoid_tissue,lymph_node,Substitution - Missense,+1 	.	.	COAD-AA-3679	Broad	Missense_Mutation	SNP	7518264	7518264	TP53	17	G	A	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	16182	49	1005
TP53	7157	broad.mit.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3979-01A-01W-0995-10	TCGA-AA-3979-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon7	c.C742T	p.R248W	TP53,haematopoietic_and_lymphoid_tissue,lymph_node,Substitution - Missense,+1 	.	.	COAD-AA-3979	Broad	Missense_Mutation	SNP	7518264	7518264	TP53	17	G	A	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	16182	106	1005
TP53	7157	broad.mit.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A011-01	TCGA-AG-A011-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001126114	exon7	c.C742T	p.R248W	TP53,haematopoietic_and_lymphoid_tissue,lymph_node,Substitution - Missense,+1	.	.	READ-AG-A011	Baylor+Broad	Missense_Mutation	SNP	7518264	7518264	TP53	17	G	G	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	16182	210	1005
TP53	7157	broad.mit.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A01W-01	TCGA-AG-A01W-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon7	c.C742T	p.R248W	TP53,haematopoietic_and_lymphoid_tissue,lymph_node,Substitution - Missense,+1	.	.	READ-AG-A01W	Broad	Missense_Mutation	SNP	7518264	7518264	TP53	17	G	A	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	16182	215	1005
TP53	7157	broad.mit.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A032-01	TCGA-AG-A032-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon7	c.C742T	p.R248W	TP53,haematopoietic_and_lymphoid_tissue,lymph_node,Substitution - Missense,+1	.	.	READ-AG-A032	Broad	Missense_Mutation	SNP	7518264	7518264	TP53	17	G	A	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	16182	223	1005
TP53	7157	hgsc.bcm.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon7	c.C742T	p.R248W	TP53,haematopoietic_and_lymphoid_tissue,lymph_node,Substitution - Missense,+1	.	.	COAD-AA-A00W	Baylor	Missense_Mutation	SNP	7518264	7518264	TP53	17	G	G	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	16182	126	1005
TP53	7157	hgsc.bcm.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon7	c.C742T	p.R248W	TP53,haematopoietic_and_lymphoid_tissue,lymph_node,Substitution - Missense,+1	.	.	READ-AG-3608	Baylor	Missense_Mutation	SNP	7518264	7518264	TP53	17	G	G	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	16182	179	1005
PIK3CA	5290	broad.mit.edu	36	3	180434779	180434779	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006218	exon21	c.A3140G	p.H1047R	PIK3CA,breast,NS,Substitution - Missense,0 	.	.	COAD-A6-3808	Broad	Missense_Mutation	SNP	180434779	180434779	PIK3CA	3	A	G	G	G	1	0	0	0	0	1	0	0	0	8	8	3	3	11758	9	977
PIK3CA	5290	broad.mit.edu	36	3	180434779	180434779	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3696-01A-01W-0900-09	TCGA-AA-3696-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006218	exon21	c.A3140G	p.H1047R	PIK3CA,breast,NS,Substitution - Missense,0 	.	.	COAD-AA-3696	Broad	Missense_Mutation	SNP	180434779	180434779	PIK3CA	3	A	G	G	G	1	0	0	0	0	1	0	0	0	8	8	3	3	11758	58	977
PIK3CA	5290	broad.mit.edu	36	3	180434779	180434779	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006218	exon21	c.A3140G	p.H1047R	PIK3CA,breast,NS,Substitution - Missense,0 	.	.	COAD-AA-3715	Broad	Missense_Mutation	SNP	180434779	180434779	PIK3CA	3	A	G	G	G	1	0	0	0	0	1	0	0	0	8	8	3	3	11758	60	977
PIK3CA	5290	broad.mit.edu	36	3	180434779	180434779	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3877-01A-01W-0995-10	TCGA-AA-3877-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006218	exon21	c.A3140G	p.H1047R	PIK3CA,breast,NS,Substitution - Missense,0 	.	.	COAD-AA-3877	Broad	Missense_Mutation	SNP	180434779	180434779	PIK3CA	3	A	G	G	G	1	0	0	0	0	1	0	0	0	8	8	3	3	11758	90	977
PIK3CA	5290	broad.mit.edu	36	3	180434779	180434779	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006218	exon21	c.A3140G	p.H1047R	PIK3CA,breast,NS,Substitution - Missense,0 	.	.	COAD-AA-3947	Broad	Missense_Mutation	SNP	180434779	180434779	PIK3CA	3	A	G	G	G	1	0	0	0	0	1	0	0	0	8	8	3	3	11758	94	977
TP53	7157	broad.mit.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	T	T	rs28934576	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126114	exon8	c.G818A	p.R273H	TP53,central_nervous_system,brain,Substitution - Missense,-1 	.	.	COAD-AA-3949	Broad	Missense_Mutation	SNP	7517845	7517845	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	16182	95	947
TP53	7157	broad.mit.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	T	T	rs28934576	unknown	TCGA-AA-A01D-01A-01W-A00E-09	TCGA-AA-A01D-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon8	c.G818A	p.R273H	TP53,central_nervous_system,brain,Substitution - Missense,-1 	.	.	COAD-AA-A01D	Broad	Missense_Mutation	SNP	7517845	7517845	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	16182	130	947
TP53	7157	broad.mit.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	T	T	rs28934576	unknown	TCGA-AG-3902-01	TCGA-AG-3902-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon8	c.G818A	p.R273H	TP53,central_nervous_system,brain,Substitution - Missense,-1	.	.	READ-AG-3902	Broad	Missense_Mutation	SNP	7517845	7517845	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	16182	197	947
TP53	7157	hgsc.bcm.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	C	T	rs28934576	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon8	c.G818A	p.R273H	TP53,central_nervous_system,brain,Substitution - Missense,-1	.	.	COAD-AA-3556	Baylor	Missense_Mutation	SNP	7517845	7517845	TP53	17	C	C	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	16182	38	947
TP53	7157	hgsc.bcm.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	C	T	rs28934576	unknown	TCGA-AG-3578-01A-01W-0831-10	TCGA-AG-3578-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon8	c.G818A	p.R273H	TP53,central_nervous_system,brain,Substitution - Missense,-1	.	.	READ-AG-3578	Baylor	Missense_Mutation	SNP	7517845	7517845	TP53	17	C	C	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	16182	163	947
TP53	7157	hgsc.bcm.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	C	T	rs28934576	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon8	c.G818A	p.R273H	TP53,central_nervous_system,brain,Substitution - Missense,-1	.	.	READ-AG-3581	Baylor	Missense_Mutation	SNP	7517845	7517845	TP53	17	C	C	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	16182	165	947
TP53	7157	hgsc.bcm.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	C	T	rs28934576	unknown	TCGA-AG-3587-01A-01W-0831-10	TCGA-AG-3587-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon8	c.G818A	p.R273H	TP53,central_nervous_system,brain,Substitution - Missense,-1	.	.	READ-AG-3587	Baylor	Missense_Mutation	SNP	7517845	7517845	TP53	17	C	C	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	16182	170	947
TP53	7157	broad.mit.edu	36	17	7517846	7517846	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3844-01A-01W-0995-10	TCGA-AA-3844-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon8	c.C817T	p.R273C	TP53,central_nervous_system,brain,Substitution - Missense,0 	.	.	COAD-AA-3844	Broad	Missense_Mutation	SNP	7517846	7517846	TP53	17	G	A	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	16182	71	938
TP53	7157	broad.mit.edu	36	17	7517846	7517846	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AY-4070-01A-01W-1073-09	TCGA-AY-4070-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon8	c.C817T	p.R273C	TP53,central_nervous_system,brain,Substitution - Missense,0 	.	.	COAD-AY-4070	Broad	Missense_Mutation	SNP	7517846	7517846	TP53	17	G	A	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	16182	154	938
TP53	7157	hgsc.bcm.edu	36	17	7517846	7517846	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon8	c.C817T	p.R273C	TP53,central_nervous_system,brain,Substitution - Missense,0	.	.	COAD-AA-3520	Baylor	Missense_Mutation	SNP	7517846	7517846	TP53	17	G	G	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	16182	16	938
TP53	7157	hgsc.bcm.edu	36	17	7517846	7517846	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon8	c.C817T	p.R273C	TP53,central_nervous_system,brain,Substitution - Missense,0	.	.	COAD-AA-3561	Baylor	Missense_Mutation	SNP	7517846	7517846	TP53	17	G	G	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	16182	41	938
TP53	7157	broad.mit.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	T	T	rs28934578	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon5	c.G524A	p.R175H	TP53,lung,NS,Substitution - Missense,0 	.	.	COAD-AA-3851	Broad	Missense_Mutation	SNP	7519131	7519131	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	16182	76	775
TP53	7157	broad.mit.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	T	T	rs28934578	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon5	c.G524A	p.R175H	TP53,lung,NS,Substitution - Missense,0 	.	.	COAD-AA-A01K	Broad	Missense_Mutation	SNP	7519131	7519131	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	16182	134	775
TP53	7157	broad.mit.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	T	T	rs28934578	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon5	c.G524A	p.R175H	TP53,lung,NS,Substitution - Missense,0 	.	.	COAD-AA-A01T	Broad	Missense_Mutation	SNP	7519131	7519131	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	16182	139	775
TP53	7157	broad.mit.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	T	T	rs28934578	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon5	c.G524A	p.R175H	TP53,lung,NS,Substitution - Missense,0 	.	.	COAD-AA-A02F	Broad	Missense_Mutation	SNP	7519131	7519131	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	16182	146	775
TP53	7157	broad.mit.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	T	T	rs28934578	unknown	TCGA-AF-3913-01	TCGA-AF-3913-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon5	c.G524A	p.R175H	TP53,lung,NS,Substitution - Missense,0	.	.	READ-AF-3913	Broad	Missense_Mutation	SNP	7519131	7519131	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	16182	160	775
TP53	7157	broad.mit.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	T	T	rs28934578	unknown	TCGA-AG-A020-01	TCGA-AG-A020-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon5	c.G524A	p.R175H	TP53,lung,NS,Substitution - Missense,0	.	.	READ-AG-A020	Broad	Missense_Mutation	SNP	7519131	7519131	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	16182	217	775
TP53	7157	hgsc.bcm.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-A6-2670-01A-02W-0831-10	TCGA-A6-2670-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon5	c.G524A	p.R175H	TP53,lung,NS,Substitution - Missense,0	.	.	COAD-A6-2670	Baylor	Missense_Mutation	SNP	7519131	7519131	TP53	17	C	C	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	16182	1	775
TP53	7157	hgsc.bcm.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-A6-2683-01A-01W-0831-10	TCGA-A6-2683-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon5	c.G524A	p.R175H	TP53,lung,NS,Substitution - Missense,0	.	.	COAD-A6-2683	Baylor	Missense_Mutation	SNP	7519131	7519131	TP53	17	C	C	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	16182	7	775
TP53	7157	hgsc.bcm.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon5	c.G524A	p.R175H	TP53,lung,NS,Substitution - Missense,0	.	.	COAD-AA-3552	Baylor	Missense_Mutation	SNP	7519131	7519131	TP53	17	C	C	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	16182	34	775
TP53	7157	hgsc.bcm.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon5	c.G524A	p.R175H	TP53,lung,NS,Substitution - Missense,0	.	.	COAD-AA-3558	Baylor	Missense_Mutation	SNP	7519131	7519131	TP53	17	C	C	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	16182	39	775
TP53	7157	hgsc.bcm.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon5	c.G524A	p.R175H	TP53,lung,NS,Substitution - Missense,0	.	.	COAD-AA-A01G	Baylor	Missense_Mutation	SNP	7519131	7519131	TP53	17	C	C	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	16182	132	775
TP53	7157	hgsc.bcm.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon5	c.G524A	p.R175H	TP53,lung,NS,Substitution - Missense,0	.	.	READ-AG-3598	Baylor	Missense_Mutation	SNP	7519131	7519131	TP53	17	C	C	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	16182	173	775
TP53	7157	hgsc.bcm.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-AG-3605-01A-01W-0833-10	TCGA-AG-3605-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon5	c.G524A	p.R175H	TP53,lung,NS,Substitution - Missense,0	.	.	READ-AG-3605	Baylor	Missense_Mutation	SNP	7519131	7519131	TP53	17	C	C	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	16182	178	775
TP53	7157	hgsc.bcm.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon5	c.G524A	p.R175H	TP53,lung,NS,Substitution - Missense,0	.	.	READ-AG-A00C	Baylor	Missense_Mutation	SNP	7519131	7519131	TP53	17	C	C	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	16182	207	775
TP53	7157	hgsc.bcm.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-AG-A016-01A-01W-A005-10	TCGA-AG-A016-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon5	c.G524A	p.R175H	TP53,lung,NS,Substitution - Missense,0	.	.	READ-AG-A016	Baylor	Missense_Mutation	SNP	7519131	7519131	TP53	17	C	C	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	16182	213	775
TP53	7157	broad.mit.edu	36	17	7519132	7519132	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126114	exon5	c.C523T	p.R175C	TP53,lung,NS,Substitution - Missense,+1 	.	.	COAD-AA-A010	Broad	Missense_Mutation	SNP	7519132	7519132	TP53	17	G	A	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	16182	128	755
TP53	7157	hgsc.bcm.edu	36	17	7519132	7519132	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon5	c.C523T	p.R175C	TP53,lung,NS,Substitution - Missense,+1	.	.	COAD-AA-A00E	Baylor	Missense_Mutation	SNP	7519132	7519132	TP53	17	G	G	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	16182	116	755
PIK3CA	5290	broad.mit.edu	36	3	180418786	180418786	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon10	c.A1634C	p.E545A	PIK3CA,urinary_tract,bladder,Substitution - Missense,+1 	.	.	COAD-AA-3956	Broad	Missense_Mutation	SNP	180418786	180418786	PIK3CA	3	A	C	C	C	1	0	0	0	0	1	0	0	0	11	11	3	3	11758	98	700
PIK3CA	5290	broad.mit.edu	36	3	180418786	180418786	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3878-01	TCGA-AG-3878-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006218	exon10	c.A1634G	p.E545G	PIK3CA,urinary_tract,bladder,Substitution - Missense,+1	.	.	READ-AG-3878	Broad	Missense_Mutation	SNP	180418786	180418786	PIK3CA	3	A	G	G	G	1	0	0	0	0	1	0	0	0	11	11	3	3	11758	185	700
NRAS	4893	broad.mit.edu	36	1	115060268	115060268	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002524	exon2	c.G37C	p.G13R	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-2 	.	.	COAD-AA-A024	Broad	Missense_Mutation	SNP	115060268	115060268	NRAS	1	C	G	G	G	1	0	0	0	0	1	0	0	0	21	21	2	2	10491	144	688
NRAS	4893	broad.mit.edu	36	1	115060268	115060268	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002524	exon2	c.G37C	p.G13R	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-2 	.	.	COAD-AA-A02F	Broad	Missense_Mutation	SNP	115060268	115060268	NRAS	1	C	G	G	G	1	0	0	0	0	1	0	0	0	21	21	2	2	10491	146	688
PIK3CA	5290	broad.mit.edu	36	3	180418785	180418785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon10	c.G1633A	p.E545K	PIK3CA,urinary_tract,bladder,Substitution - Missense,0 	.	.	COAD-AA-3818	Broad	Missense_Mutation	SNP	180418785	180418785	PIK3CA	3	G	A	A	A	1	0	0	0	0	1	0	0	0	45	45	2	2	11758	64	654
PIK3CA	5290	broad.mit.edu	36	3	180418785	180418785	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3852-01A-01W-0900-09	TCGA-AA-3852-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon10	c.G1633C	p.E545Q	PIK3CA,urinary_tract,bladder,Substitution - Missense,0 	.	.	COAD-AA-3852	Broad	Missense_Mutation	SNP	180418785	180418785	PIK3CA	3	G	C	C	C	1	0	0	0	0	1	0	0	0	45	45	2	2	11758	77	654
PIK3CA	5290	broad.mit.edu	36	3	180418785	180418785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3939-01A-01W-0995-10	TCGA-AA-3939-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon10	c.G1633A	p.E545K	PIK3CA,urinary_tract,bladder,Substitution - Missense,0 	.	.	COAD-AA-3939	Broad	Missense_Mutation	SNP	180418785	180418785	PIK3CA	3	G	A	A	A	1	0	0	0	0	1	0	0	0	45	45	2	2	11758	92	654
PIK3CA	5290	broad.mit.edu	36	3	180418785	180418785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon10	c.G1633A	p.E545K	PIK3CA,urinary_tract,bladder,Substitution - Missense,0 	.	.	COAD-AA-A01K	Broad	Missense_Mutation	SNP	180418785	180418785	PIK3CA	3	G	A	A	A	1	0	0	0	0	1	0	0	0	45	45	2	2	11758	134	654
PIK3CA	5290	broad.mit.edu	36	3	180418785	180418785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon10	c.G1633A	p.E545K	PIK3CA,urinary_tract,bladder,Substitution - Missense,0 	.	.	COAD-AA-A02O	Broad	Missense_Mutation	SNP	180418785	180418785	PIK3CA	3	G	A	A	A	1	0	0	0	0	1	0	0	0	45	45	2	2	11758	149	654
PIK3CA	5290	broad.mit.edu	36	3	180418785	180418785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02Y-01A-43W-A096-10	TCGA-AA-A02Y-10A-01W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon10	c.G1633A	p.E545K	PIK3CA,urinary_tract,bladder,Substitution - Missense,0 	.	.	COAD-AA-A02Y	Broad	Missense_Mutation	SNP	180418785	180418785	PIK3CA	3	G	A	A	A	1	0	0	0	0	1	0	0	0	45	45	2	2	11758	151	654
PIK3CA	5290	broad.mit.edu	36	3	180418785	180418785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon10	c.G1633A	p.E545K	PIK3CA,urinary_tract,bladder,Substitution - Missense,0 	.	.	COAD-AA-A03F	Broad	Missense_Mutation	SNP	180418785	180418785	PIK3CA	3	G	A	A	A	1	0	0	0	0	1	0	0	0	45	45	2	2	11758	152	654
PIK3CA	5290	broad.mit.edu	36	3	180418785	180418785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A03J-01A-21W-A096-10	TCGA-AA-A03J-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon10	c.G1633A	p.E545K	PIK3CA,urinary_tract,bladder,Substitution - Missense,0 	.	.	COAD-AA-A03J	Broad	Missense_Mutation	SNP	180418785	180418785	PIK3CA	3	G	A	A	A	1	0	0	0	0	1	0	0	0	45	45	2	2	11758	153	654
PIK3CA	5290	broad.mit.edu	36	3	180418785	180418785	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4015-01	TCGA-AG-4015-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006218	exon10	c.G1633A	p.E545K	PIK3CA,urinary_tract,bladder,Substitution - Missense,0	.	.	READ-AG-4015	Broad	Missense_Mutation	SNP	180418785	180418785	PIK3CA	3	G	A	A	A	1	0	0	0	0	1	0	0	0	45	45	2	2	11758	204	654
NRAS	4893	broad.mit.edu	36	1	115060270	115060270	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002524	exon2	c.G35C	p.G12A	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-3850	Broad	Missense_Mutation	SNP	115060270	115060270	NRAS	1	C	G	G	G	1	0	0	0	0	1	0	0	0	18	18	2	2	10491	75	649
NRAS	4893	broad.mit.edu	36	1	115060270	115060270	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002524	exon2	c.G35A	p.G12D	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-3972	Broad	Missense_Mutation	SNP	115060270	115060270	NRAS	1	C	T	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	10491	101	649
NRAS	4893	broad.mit.edu	36	1	115060270	115060270	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002524	exon2	c.G35A	p.G12D	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-3973	Broad	Missense_Mutation	SNP	115060270	115060270	NRAS	1	C	T	T	T	1	0	0	0	0	1	0	0	0	18	18	2	2	10491	102	649
TP53	7157	broad.mit.edu	36	17	7517843	7517843	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A014-01	TCGA-AG-A014-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	SOLID			Illumina	NM_001126114	exon8	c.G820C	p.V274L	TP53,central_nervous_system,brain,Substitution - Missense,-2	.	.	READ-AG-A014	Baylor+Broad	Missense_Mutation	SNP	7517843	7517843	TP53	17	C	C	G	G	1	0	0	0	0	1	0	0	0	17	17	2	2	16182	211	586
NRAS	4893	broad.mit.edu	36	1	115060271	115060271	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002524	exon2	c.G34T	p.G12C	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1 	.	.	COAD-AA-A01V	Broad	Missense_Mutation	SNP	115060271	115060271	NRAS	1	C	A	A	A	1	0	0	0	0	1	0	0	0	24	24	2	2	10491	140	566
NRAS	4893	hgsc.bcm.edu	36	1	115060271	115060271	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_002524	exon2	c.G34T	p.G12C	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1	.	.	COAD-AA-3558	Baylor	Missense_Mutation	SNP	115060271	115060271	NRAS	1	C	C	A	A	1	0	0	0	0	1	0	0	0	24	24	2	2	10491	39	566
NRAS	4893	hgsc.bcm.edu	36	1	115060271	115060271	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002524	exon2	c.G34T	p.G12C	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1	.	.	READ-AF-2691	Baylor	Missense_Mutation	SNP	115060271	115060271	NRAS	1	C	C	A	A	1	0	0	0	0	1	0	0	0	24	24	2	2	10491	157	566
TP53	7157	hgsc.bcm.edu	36	17	7518273	7518273	+	Missense_Mutation	SNP	C	C	T	rs28934575	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon7	c.G733A	p.G245S	TP53,central_nervous_system,brain,Substitution - Missense,0	.	.	COAD-AA-3519	Baylor	Missense_Mutation	SNP	7518273	7518273	TP53	17	C	C	T	T	1	0	0	0	0	1	0	0	0	23	23	1	1	16182	15	505
TP53	7157	hgsc.bcm.edu	36	17	7518273	7518273	+	Missense_Mutation	SNP	C	C	T	rs28934575	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon7	c.G733A	p.G245S	TP53,central_nervous_system,brain,Substitution - Missense,0	.	.	COAD-AA-3542	Baylor	Missense_Mutation	SNP	7518273	7518273	TP53	17	C	C	T	T	1	0	0	0	0	1	0	0	0	23	23	1	1	16182	29	505
TP53	7157	hgsc.bcm.edu	36	17	7518273	7518273	+	Missense_Mutation	SNP	C	C	T	rs28934575	unknown	TCGA-AA-A01F-01A-01W-A005-10	TCGA-AA-A01F-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon7	c.G733A	p.G245S	TP53,central_nervous_system,brain,Substitution - Missense,0	.	.	COAD-AA-A01F	Baylor	Missense_Mutation	SNP	7518273	7518273	TP53	17	C	C	T	T	1	0	0	0	0	1	0	0	0	23	23	1	1	16182	131	505
TP53	7157	hgsc.bcm.edu	36	17	7518273	7518273	+	Missense_Mutation	SNP	C	C	T	rs28934575	unknown	TCGA-AG-3601-01A-01W-0833-10	TCGA-AG-3601-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon7	c.G733A	p.G245S	TP53,central_nervous_system,brain,Substitution - Missense,0	.	.	READ-AG-3601	Baylor	Missense_Mutation	SNP	7518273	7518273	TP53	17	C	C	T	T	1	0	0	0	0	1	0	0	0	23	23	1	1	16182	176	505
TP53	7157	hgsc.bcm.edu	36	17	7518272	7518272	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon7	c.G734A	p.G245D	TP53,central_nervous_system,brain,Substitution - Missense,-1	.	.	COAD-AA-3562	Baylor	Missense_Mutation	SNP	7518272	7518272	TP53	17	C	C	T	T	1	0	0	0	0	1	0	0	0	26	26	2	2	16182	42	481
TP53	7157	broad.mit.edu	36	17	7518275	7518275	+	Missense_Mutation	SNP	C	T	T	rs28934572	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon7	c.G731A	p.G244D	TP53,central_nervous_system,brain,Substitution - Missense,+2 	.	.	COAD-AA-3681	Broad	Missense_Mutation	SNP	7518275	7518275	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	26	26	2	2	16182	51	444
TP53	7157	hgsc.bcm.edu	36	17	7518275	7518275	+	Missense_Mutation	SNP	C	C	T	rs28934572	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon7	c.G731A	p.G244D	TP53,central_nervous_system,brain,Substitution - Missense,+2	.	.	COAD-AA-A00L	Baylor	Missense_Mutation	SNP	7518275	7518275	TP53	17	C	C	T	T	1	0	0	0	0	1	0	0	0	26	26	2	2	16182	120	444
TP53	7157	broad.mit.edu	36	17	7517819	7517819	+	Missense_Mutation	SNP	G	A	A	rs28934574	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon8	c.C844T	p.R282W	TP53,central_nervous_system,brain,Substitution - Missense,-2 	.	.	COAD-AA-3667	Broad	Missense_Mutation	SNP	7517819	7517819	TP53	17	G	A	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	16182	45	431
TP53	7157	broad.mit.edu	36	17	7517819	7517819	+	Missense_Mutation	SNP	G	A	A	rs28934574	unknown	TCGA-AG-3909-01	TCGA-AG-3909-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon8	c.C844T	p.R282W	TP53,central_nervous_system,brain,Substitution - Missense,-2	.	.	READ-AG-3909	Broad	Missense_Mutation	SNP	7517819	7517819	TP53	17	G	A	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	16182	198	431
TP53	7157	hgsc.bcm.edu	36	17	7517819	7517819	+	Missense_Mutation	SNP	G	G	A	rs28934574	unknown	TCGA-AG-3609-01A-02W-0833-10	TCGA-AG-3609-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon8	c.C844T	p.R282W	TP53,central_nervous_system,brain,Substitution - Missense,-2	.	.	READ-AG-3609	Baylor	Missense_Mutation	SNP	7517819	7517819	TP53	17	G	G	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	16182	180	431
CTNNB1	1499	hgsc.bcm.edu	36	3	41241105	41241105	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001098210	exon3	c.C98G	p.S33C	CTNNB1,biliary_tract,gallbladder,Substitution - Missense,+1	.	.	COAD-A6-2678	Baylor	Missense_Mutation	SNP	41241105	41241105	CTNNB1	3	C	C	G	G	1	0	0	0	0	1	0	0	0	32	32	2	2	3962	6	349
PIK3CA	5290	broad.mit.edu	36	3	180418776	180418776	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon10	c.G1624A	p.E542K	PIK3CA,central_nervous_system,brain,Substitution - Missense,0 	.	.	COAD-AA-3812	Broad	Missense_Mutation	SNP	180418776	180418776	PIK3CA	3	G	A	A	A	1	0	0	0	0	1	0	0	0	45	45	2	2	11758	62	334
PIK3CA	5290	broad.mit.edu	36	3	180418776	180418776	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon10	c.G1624A	p.E542K	PIK3CA,central_nervous_system,brain,Substitution - Missense,0 	.	.	COAD-AA-3850	Broad	Missense_Mutation	SNP	180418776	180418776	PIK3CA	3	G	A	A	A	1	0	0	0	0	1	0	0	0	45	45	2	2	11758	75	334
APC	324	broad.mit.edu	36	5	112203115	112203115	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.G3871T	p.E1291X	APC,upper_aerodigestive_tract,sinonasal_and_nasal_cavity,Substitution - Missense,0	.	.	READ-AG-A02X	Broad	Nonsense_Mutation	SNP	112203115	112203115	APC	5	G	T	T	T	1	0	0	0	0	0	1	0	0	33	33	5	2	749	222	333
TP53	7157	broad.mit.edu	36	17	7519127	7519127	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3866-01A-01W-0995-10	TCGA-AA-3866-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001126114	exon5	c.C528A	p.C176X	TP53,central_nervous_system,brain,Substitution - Missense,-1 	.	.	COAD-AA-3866	Broad	Nonsense_Mutation	SNP	7519127	7519127	TP53	17	G	T	T	T	1	0	0	0	0	0	1	0	0	42	42	5	2	16182	84	239
TP53	7157	broad.mit.edu	36	17	7518937	7518937	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126114	exon6	c.C637T	p.R213X	TP53,central_nervous_system,brain,Substitution - Missense,+1 	.	.	COAD-AA-3977	Broad	Nonsense_Mutation	SNP	7518937	7518937	TP53	17	G	A	A	A	1	0	0	0	0	0	1	0	0	37	37	5	1	16182	105	232
TP53	7157	broad.mit.edu	36	17	7518937	7518937	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3980-01A-02W-0995-10	TCGA-AA-3980-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon6	c.C637T	p.R213X	TP53,central_nervous_system,brain,Substitution - Missense,+1 	.	.	COAD-AA-3980	Broad	Nonsense_Mutation	SNP	7518937	7518937	TP53	17	G	A	A	A	1	0	0	0	0	0	1	0	0	37	37	5	1	16182	107	232
TP53	7157	broad.mit.edu	36	17	7518937	7518937	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3999-01	TCGA-AG-3999-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon6	c.C637T	p.R213X	TP53,central_nervous_system,brain,Substitution - Missense,+1	.	.	READ-AG-3999	Broad	Nonsense_Mutation	SNP	7518937	7518937	TP53	17	G	A	A	A	1	0	0	0	0	0	1	0	0	37	37	5	1	16182	199	232
TP53	7157	hgsc.bcm.edu	36	17	7518937	7518937	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon6	c.C637T	p.R213X	TP53,central_nervous_system,brain,Substitution - Missense,+1	.	.	COAD-A6-2674	Baylor	Nonsense_Mutation	SNP	7518937	7518937	TP53	17	G	G	A	A	1	0	0	0	0	0	1	0	0	37	37	5	1	16182	3	232
TP53	7157	hgsc.bcm.edu	36	17	7518937	7518937	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon6	c.C637T	p.R213X	TP53,central_nervous_system,brain,Substitution - Missense,+1	.	.	COAD-AA-3553	Baylor	Nonsense_Mutation	SNP	7518937	7518937	TP53	17	G	G	A	A	1	0	0	0	0	0	1	0	0	37	37	5	1	16182	35	232
TP53	7157	hgsc.bcm.edu	36	17	7518937	7518937	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2689-01A-01W-0831-10	TCGA-AF-2689-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon6	c.C637T	p.R213X	TP53,central_nervous_system,brain,Substitution - Missense,+1	.	.	READ-AF-2689	Baylor	Nonsense_Mutation	SNP	7518937	7518937	TP53	17	G	G	A	A	1	0	0	0	0	0	1	0	0	37	37	5	1	16182	156	232
TP53	7157	hgsc.bcm.edu	36	17	7518937	7518937	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3594-01A-02W-0831-10	TCGA-AG-3594-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon6	c.C637T	p.R213X	TP53,central_nervous_system,brain,Substitution - Missense,+1	.	.	READ-AG-3594	Baylor	Nonsense_Mutation	SNP	7518937	7518937	TP53	17	G	G	A	A	1	0	0	0	0	0	1	0	0	37	37	5	1	16182	172	232
TP53	7157	hgsc.bcm.edu	36	17	7518293	7518293	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon7	c.G713A	p.C238Y	TP53,oesophagus,NS,Substitution - Missense,-2	.	.	COAD-AA-3531	Baylor	Missense_Mutation	SNP	7518293	7518293	TP53	17	C	C	T	T	1	0	0	0	0	1	0	0	0	17	17	2	2	16182	25	231
TP53	7157	broad.mit.edu	36	17	7518295	7518295	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AY-4071-01A-01W-1073-09	TCGA-AY-4071-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon7	c.G711T	p.M237I	TP53,oesophagus,NS,Substitution - Missense,0 	.	.	COAD-AY-4071	Broad	Missense_Mutation	SNP	7518295	7518295	TP53	17	C	A	A	A	1	0	0	0	0	1	0	0	0	17	17	2	2	16182	155	216
TP53	7157	broad.mit.edu	36	17	7517831	7517831	+	Missense_Mutation	SNP	G	C	C	rs17849781	unknown	TCGA-AG-3882-01	TCGA-AG-3882-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon8	c.C832G	p.P278A	TP53,central_nervous_system,brain,Substitution - Missense,0	.	.	READ-AG-3882	Broad	Missense_Mutation	SNP	7517831	7517831	TP53	17	G	C	C	C	1	0	0	0	0	1	0	0	0	41	41	2	2	16182	187	216
GNAS	2778	broad.mit.edu	36	20	56917816	56917816	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080426	exon7	c.G560A	p.R187H	GNAS,large_intestine,colon,Substitution - Missense,+1 	.	.	COAD-AA-3989	Broad	Missense_Mutation	SNP	56917816	56917816	GNAS	20	G	A	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	6418	111	210
TP53	7157	hgsc.bcm.edu	36	17	7519128	7519128	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3549-01A-02W-0831-10	TCGA-AA-3549-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon5	c.G527T	p.C176F	TP53,central_nervous_system,brain,Substitution - Missense,0	.	.	COAD-AA-3549	Baylor	Missense_Mutation	SNP	7519128	7519128	TP53	17	C	C	A	A	1	0	0	0	0	1	0	0	0	25	25	2	2	16182	33	209
PIK3CA	5290	broad.mit.edu	36	3	180418788	180418788	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon10	c.C1636A	p.Q546K	PIK3CA,large_intestine,colon,Substitution - Missense,-1 	.	.	COAD-AA-A01I	Broad	Missense_Mutation	SNP	180418788	180418788	PIK3CA	3	C	A	A	A	1	0	0	0	0	1	0	0	0	25	25	2	2	11758	133	198
KRAS	3845	broad.mit.edu	36	12	25271543	25271543	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004985	exon3	c.A182T	p.Q61L	KRAS,thyroid,NS,Substitution - Missense,0	.	.	READ-AG-A02X	Broad	Missense_Mutation	SNP	25271543	25271543	KRAS	12	T	A	A	A	1	0	0	0	0	1	0	0	0	63	63	3	3	8321	222	198
KRAS	3845	hgsc.bcm.edu	36	12	25271543	25271543	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3521-01A-01W-0831-10	TCGA-AA-3521-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon3	c.A182T	p.Q61L	KRAS,thyroid,NS,Substitution - Missense,0	.	.	COAD-AA-3521	Baylor	Missense_Mutation	SNP	25271543	25271543	KRAS	12	T	T	A	A	1	0	0	0	0	1	0	0	0	63	63	3	3	8321	17	198
TP53	7157	broad.mit.edu	36	17	7517830	7517830	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon8	c.C833G	p.P278R	TP53,central_nervous_system,brain,Substitution - Missense,-1 	.	.	COAD-AA-A01S	Broad	Missense_Mutation	SNP	7517830	7517830	TP53	17	G	C	C	C	1	0	0	0	0	1	0	0	0	35	35	2	2	16182	138	194
TP53	7157	broad.mit.edu	36	17	7518988	7518988	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001126114	exon6	c.C586T	p.R196X	TP53,central_nervous_system,brain,Substitution - Missense,-2 	.	.	COAD-AA-A02W	Broad	Nonsense_Mutation	SNP	7518988	7518988	TP53	17	G	A	A	A	1	0	0	0	0	0	1	0	0	39	39	5	1	16182	150	193
TP53	7157	hgsc.bcm.edu	36	17	7518988	7518988	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon6	c.C586T	p.R196X	TP53,central_nervous_system,brain,Substitution - Missense,-2	.	.	COAD-A6-2678	Baylor	Nonsense_Mutation	SNP	7518988	7518988	TP53	17	G	G	A	A	1	0	0	0	0	0	1	0	0	39	39	5	1	16182	6	193
TP53	7157	hgsc.bcm.edu	36	17	7518988	7518988	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon6	c.C586T	p.R196X	TP53,central_nervous_system,brain,Substitution - Missense,-2	.	.	COAD-AA-A00D	Baylor	Nonsense_Mutation	SNP	7518988	7518988	TP53	17	G	G	A	A	1	0	0	0	0	0	1	0	0	39	39	5	1	16182	115	193
TP53	7157	hgsc.bcm.edu	36	17	7518990	7518990	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon6	c.T584C	p.I195T	TP53,central_nervous_system,brain,Substitution - Missense,0	.	.	READ-AF-3400	Baylor	Missense_Mutation	SNP	7518990	7518990	TP53	17	A	A	G	G	1	0	0	0	0	1	0	0	0	12	12	3	3	16182	159	193
TP53	7157	hgsc.bcm.edu	36	17	7518938	7518939	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	AA	AA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon6	c.635_636del	p.212_212del	.	.	.	COAD-AA-3560	Baylor	Frame_Shift_Del	DEL	7518938	7518939	TP53	17	AA	AA	-	-	1	0	1	0	1	0	0	0	0	9	9	5	5	16182	40	189
PTEN	5728	broad.mit.edu	36	10	89682885	89682885	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000314	exon5	c.G389A	p.R130Q	PTEN,central_nervous_system,brain,Substitution - Nonsense,+1 	.	.	COAD-AA-3977	Broad	Missense_Mutation	SNP	89682885	89682885	PTEN	10	G	A	A	A	1	0	0	0	0	1	0	0	0	37	37	1	1	12571	105	187
PTEN	5728	broad.mit.edu	36	10	89682885	89682885	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000314	exon5	c.G389A	p.R130Q	PTEN,central_nervous_system,brain,Substitution - Nonsense,+1 	.	.	COAD-AA-A010	Broad	Missense_Mutation	SNP	89682885	89682885	PTEN	10	G	A	A	A	1	0	0	0	0	1	0	0	0	37	37	1	1	12571	128	187
PTEN	5728	broad.mit.edu	36	10	89682885	89682885	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000314	exon5	c.G389A	p.R130Q	PTEN,central_nervous_system,brain,Substitution - Nonsense,+1	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	89682885	89682885	PTEN	10	G	G	A	A	1	0	0	0	0	1	0	0	0	37	37	1	1	12571	205	187
PTEN	5728	broad.mit.edu	36	10	89682884	89682884	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000314	exon5	c.C388T	p.R130X	PTEN,central_nervous_system,brain,Substitution - Nonsense,0 	.	.	COAD-AA-3864	Broad	Nonsense_Mutation	SNP	89682884	89682884	PTEN	10	C	T	T	T	1	0	0	0	0	0	1	0	0	19	19	6	1	12571	83	185
TP53	7157	broad.mit.edu	36	17	7519251	7519251	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A02J-01A-01W-A00E-09	TCGA-AA-A02J-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon5	c.G404C	p.C135S	TP53,central_nervous_system,brain,Substitution - Missense,0 	.	.	COAD-AA-A02J	Broad	Missense_Mutation	SNP	7519251	7519251	TP53	17	C	G	G	G	1	0	0	0	0	1	0	0	0	25	25	2	2	16182	148	157
TP53	7157	broad.mit.edu	36	17	7519203	7519203	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-4008-01	TCGA-AG-4008-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001126114	exon5	c.C452A	p.P151H	TP53,upper_aerodigestive_tract,mouth,Substitution - Missense,-1	.	.	READ-AG-4008	Broad	Missense_Mutation	SNP	7519203	7519203	TP53	17	G	T	T	T	1	0	0	0	0	1	0	0	0	43	43	2	2	16182	203	156
TP53	7157	broad.mit.edu	36	17	7517867	7517867	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3976-01A-01W-0995-10	TCGA-AA-3976-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon8	c.G796T	p.G266X	TP53,central_nervous_system,brain,Substitution - Missense,0 	.	.	COAD-AA-3976	Broad	Nonsense_Mutation	SNP	7517867	7517867	TP53	17	C	A	A	A	1	0	0	0	0	0	1	0	0	22	22	5	2	16182	104	141
TP53	7157	broad.mit.edu	36	17	7519259	7519259	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A03J-01A-21W-A096-10	TCGA-AA-A03J-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon5	c.G396C	p.K132N	TP53,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-A03J	Broad	Missense_Mutation	SNP	7519259	7519259	TP53	17	C	G	G	G	1	0	0	0	0	1	0	0	0	32	32	2	2	16182	153	131
APC	324	hgsc.bcm.edu	36	5	112203656	112203656	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3521-01A-01W-0831-10	TCGA-AA-3521-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.T4412A	p.L1471X	.	.	.	COAD-AA-3521	Baylor	Nonsense_Mutation	SNP	112203656	112203656	APC	5	T	T	A	A	1	0	0	0	0	0	1	0	0	61	61	5	3	749	17	131
TP53	7157	broad.mit.edu	36	17	7517810	7517810	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02X-01	TCGA-AG-A02X-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon8	c.G853T	p.E285X	TP53,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AG-A02X	Broad	Nonsense_Mutation	SNP	7517810	7517810	TP53	17	C	A	A	A	1	0	0	0	0	0	1	0	0	32	32	5	2	16182	222	126
TP53	7157	broad.mit.edu	36	17	7517839	7517839	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon8	c.G824A	p.C275Y	TP53,central_nervous_system,brain,Substitution - Missense,-1 	.	.	COAD-AA-3975	Broad	Missense_Mutation	SNP	7517839	7517839	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	17	17	2	2	16182	103	122
TP53	7157	broad.mit.edu	36	17	7518990	7518991	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126116	exon2	c.188_189insA	p.I63fs	TP53,central_nervous_system,brain,Substitution - Missense,0 	.	.	COAD-AA-3848	Broad	Frame_Shift_Ins	INS	7518990	7518991	TP53	17	-	T	T	T	1	0	1	1	0	0	0	0	0	12	12	5	5	16182	74	120
TP53	7157	hgsc.bcm.edu	36	17	7519200	7519200	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3611-01A-01W-0833-10	TCGA-AG-3611-10A-01W-0833-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon5	c.C455G	p.P152R	TP53,thyroid,NS,Substitution - Missense,0	.	.	READ-AG-3611	Baylor	Missense_Mutation	SNP	7519200	7519200	TP53	17	G	G	C	C	1	0	0	0	0	1	0	0	0	39	39	4	4	16182	181	117
TP53	7157	broad.mit.edu	36	17	7519138	7519138	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon5	c.G517A	p.V173M	TP53,autonomic_ganglia,NS,Substitution - Missense,0 	.	.	COAD-AA-3956	Broad	Missense_Mutation	SNP	7519138	7519138	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	17	17	2	2	16182	98	116
TP53	7157	hgsc.bcm.edu	36	17	7517864	7517864	+	Missense_Mutation	SNP	G	G	A	rs55832599	unknown	TCGA-A6-2676-01A-01W-0833-10	TCGA-A6-2676-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon8	c.C799T	p.R267W	TP53,vulva,NS,Substitution - Missense,-2	.	.	COAD-A6-2676	Baylor	Missense_Mutation	SNP	7517864	7517864	TP53	17	G	G	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	16182	4	116
TP53	7157	broad.mit.edu	36	17	7519260	7519260	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126114	exon5	c.A395C	p.K132T	TP53,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1 	.	.	COAD-AA-3977	Broad	Missense_Mutation	SNP	7519260	7519260	TP53	17	T	G	G	G	1	0	0	0	0	1	0	0	0	56	56	3	3	16182	105	115
APC	324	broad.mit.edu	36	5	112203538	112203538	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C4294T	p.R1432X	APC,large_intestine,rectum,Substitution - Nonsense,0 	.	.	COAD-AA-3851	Broad	Nonsense_Mutation	SNP	112203538	112203538	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	27	27	5	1	749	76	112
APC	324	broad.mit.edu	36	5	112203538	112203538	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C4294T	p.R1432X	APC,large_intestine,rectum,Substitution - Nonsense,0 	.	.	COAD-AA-3930	Broad	Nonsense_Mutation	SNP	112203538	112203538	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	27	27	6	1	749	91	112
APC	324	broad.mit.edu	36	5	112203538	112203538	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.C4294T	p.R1432X	APC,large_intestine,rectum,Substitution - Nonsense,0 	.	.	COAD-AA-A010	Broad	Nonsense_Mutation	SNP	112203538	112203538	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	27	27	5	1	749	128	112
APC	324	broad.mit.edu	36	5	112203538	112203538	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C4294T	p.R1432X	APC,large_intestine,rectum,Substitution - Nonsense,0 	.	.	COAD-AA-A01V	Broad	Nonsense_Mutation	SNP	112203538	112203538	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	27	27	5	1	749	140	112
APC	324	broad.mit.edu	36	5	112203538	112203538	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127511	exon14	c.C4294T	p.R1432X	APC,large_intestine,rectum,Substitution - Nonsense,0	.	.	READ-AG-A002	Baylor+Broad	Nonsense_Mutation	SNP	112203538	112203538	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	27	27	6	1	749	205	112
APC	324	hgsc.bcm.edu	36	5	112203538	112203538	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.C4294T	p.R1432X	APC,large_intestine,rectum,Substitution - Nonsense,0	.	.	COAD-AA-3552	Baylor	Nonsense_Mutation	SNP	112203538	112203538	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	27	27	5	1	749	34	112
APC	324	hgsc.bcm.edu	36	5	112203538	112203538	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3584-01A-01W-0831-10	TCGA-AG-3584-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.C4294T	p.R1432X	APC,large_intestine,rectum,Substitution - Nonsense,0	.	.	READ-AG-3584	Baylor	Nonsense_Mutation	SNP	112203538	112203538	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	27	27	5	1	749	168	112
TP53	7157	broad.mit.edu	36	17	7519136	7519137	+	Frame_Shift_Del	DEL	CA	-	-	novel	unknown	TCGA-AA-A004-01A-01W-A00E-09	TCGA-AA-A004-10A-01W-A00E-09	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon5	c.518_519del	p.173_173del	TP53,autonomic_ganglia,NS,Substitution - Missense,-2 	.	.	COAD-AA-A004	Broad	Frame_Shift_Del	DEL	7519136	7519137	TP53	17	CA	-	-	-	1	0	1	0	1	0	0	0	0	29	29	5	5	16182	113	111
TP53	7157	broad.mit.edu	36	17	7519234	7519234	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A036-01	TCGA-AG-A036-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon5	c.T421C	p.C141R	.	.	.	READ-AG-A036	Broad	Missense_Mutation	SNP	7519234	7519234	TP53	17	A	G	G	G	1	0	0	0	0	1	0	0	0	7	7	3	3	16182	224	111
KRAS	3845	broad.mit.edu	36	12	25271544	25271545	+	Missense_Mutation	DNP	GA	TT	TT	novel	unknown	TCGA-AA-3672-01A-01W-0900-09	TCGA-AA-3672-10A-01W-0900-09	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon3	c.180_181AA	.	KRAS,thyroid,NS,Substitution - Missense,+1 	.	.	COAD-AA-3672	Broad	Missense_Mutation	DNP	25271544	25271545	KRAS	12	GA	TT	TT	TT	1	0	0	0	0	1	0	0	0	45	45	2	2	8321	46	108
KRAS	3845	broad.mit.edu	36	12	25271544	25271545	+	Missense_Mutation	DNP	GA	TT	TT	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon3	c.180_181AA	.	KRAS,thyroid,NS,Substitution - Missense,+1 	.	.	COAD-AA-3845	Broad	Missense_Mutation	DNP	25271544	25271545	KRAS	12	GA	TT	TT	TT	1	0	0	0	0	1	0	0	0	45	45	2	2	8321	72	108
TP53	7157	broad.mit.edu	36	17	7519233	7519233	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon5	c.G422C	p.C141S	.	.	.	COAD-AA-3814	Broad	Missense_Mutation	SNP	7519233	7519233	TP53	17	C	G	G	G	1	0	0	0	0	1	0	0	0	25	25	2	2	16182	63	107
TP53	7157	broad.mit.edu	36	17	7519233	7519233	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3982-01A-02W-0995-10	TCGA-AA-3982-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon5	c.G422A	p.C141Y	.	.	.	COAD-AA-3982	Broad	Missense_Mutation	SNP	7519233	7519233	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	25	25	2	2	16182	108	107
TP53	7157	hgsc.bcm.edu	36	17	7517807	7517807	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_001126117	exon4	c.G460A	p.E154K	TP53,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	READ-AG-A00Y	Baylor	Missense_Mutation	SNP	7517807	7517807	TP53	17	C	C	T	T	1	0	0	0	0	1	0	0	0	30	30	2	2	16182	209	105
IDH2	3418	broad.mit.edu	36	15	88432939	88432939	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3672-01A-01W-0900-09	TCGA-AA-3672-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002168	exon4	c.C418T	p.R140W	.	.	.	COAD-AA-3672	Broad	Missense_Mutation	SNP	88432939	88432939	IDH2	15	G	A	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	7390	46	103
TP53	7157	broad.mit.edu	36	17	7517806	7517806	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3726-01	TCGA-AG-3726-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon8	c.A857G	p.E286G	TP53,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-1	.	.	READ-AG-3726	Broad	Missense_Mutation	SNP	7517806	7517806	TP53	17	T	C	C	C	1	0	0	0	0	1	0	0	0	62	62	3	3	16182	183	102
TP53	7157	broad.mit.edu	36	17	7518298	7518298	+	Nonsense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001126114	exon7	c.C708G	p.Y236X	TP53,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-1 	.	.	COAD-A6-3807	Broad	Nonsense_Mutation	SNP	7518298	7518298	TP53	17	G	C	C	C	1	0	0	0	0	0	1	0	0	48	48	5	2	16182	8	100
TP53	7157	broad.mit.edu	36	17	7517747	7517747	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon8	c.C916T	p.R306X	TP53,large_intestine,rectum,Substitution - Nonsense,0 	.	.	COAD-AA-3930	Broad	Nonsense_Mutation	SNP	7517747	7517747	TP53	17	G	A	A	A	1	0	0	0	0	0	1	0	0	38	38	5	1	16182	91	97
TP53	7157	broad.mit.edu	36	17	7517747	7517747	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-4005-01	TCGA-AG-4005-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon8	c.C916T	p.R306X	TP53,large_intestine,rectum,Substitution - Nonsense,0	.	.	READ-AG-4005	Broad	Nonsense_Mutation	SNP	7517747	7517747	TP53	17	G	A	A	A	1	0	0	0	0	0	1	0	0	38	38	5	1	16182	201	97
TP53	7157	broad.mit.edu	36	17	7517747	7517747	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon8	c.C916T	p.R306X	TP53,large_intestine,rectum,Substitution - Nonsense,0	.	.	READ-AG-A01Y	Broad	Nonsense_Mutation	SNP	7517747	7517747	TP53	17	G	A	A	A	1	0	0	0	0	0	1	0	0	38	38	5	1	16182	216	97
TP53	7157	hgsc.bcm.edu	36	17	7517747	7517747	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon8	c.C916T	p.R306X	TP53,large_intestine,rectum,Substitution - Nonsense,0	.	.	COAD-AA-3524	Baylor	Nonsense_Mutation	SNP	7517747	7517747	TP53	17	G	G	A	A	1	0	0	0	0	0	1	0	0	38	38	5	1	16182	19	97
TP53	7157	hgsc.bcm.edu	36	17	7518234	7518234	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon7	c.G772T	p.E258X	TP53,central_nervous_system,brain,Substitution - Missense,0	.	.	READ-AG-3612	Baylor	Nonsense_Mutation	SNP	7518234	7518234	TP53	17	C	C	A	A	1	0	0	0	0	0	1	0	0	30	30	5	2	16182	182	93
TP53	7157	broad.mit.edu	36	17	7518960	7518960	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3685-01A-02W-0900-09	TCGA-AA-3685-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon6	c.A614G	p.Y205C	TP53,stomach,NS,Substitution - Missense,0 	.	.	COAD-AA-3685	Broad	Missense_Mutation	SNP	7518960	7518960	TP53	17	T	C	C	C	1	0	0	0	0	1	0	0	0	49	49	3	3	16182	53	91
APC	324	broad.mit.edu	36	5	112203122	112203123	+	Frame_Shift_Del	DEL	TT	-	-	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	TT	TT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.3878_3879del	p.1293_1293del	.	.	.	COAD-AA-3678	Broad	Frame_Shift_Del	DEL	112203122	112203123	APC	5	TT	-	-	-	1	0	1	0	1	0	0	0	0	52	52	5	5	749	48	84
IDH2	3418	hgsc.bcm.edu	36	15	88432841	88432841	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002168	exon4	c.G516C	p.R172S	IDH2,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-1	.	.	COAD-AA-3556	Baylor	Missense_Mutation	SNP	88432841	88432841	IDH2	15	C	C	G	G	1	0	0	0	0	1	0	0	0	26	26	2	2	7390	38	83
FBXW7	55294	broad.mit.edu	36	4	153468834	153468834	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018315	exon8	c.G1154A	p.R385H	FBXW7,large_intestine,NS,Substitution - Missense,0 	.	.	COAD-AA-3681	Broad	Missense_Mutation	SNP	153468834	153468834	FBXW7	4	C	T	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	5690	51	82
FBXW7	55294	broad.mit.edu	36	4	153468835	153468835	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018315	exon8	c.C1153T	p.R385C	FBXW7,large_intestine,NS,Substitution - Missense,+1 	.	.	COAD-AA-3848	Broad	Missense_Mutation	SNP	153468835	153468835	FBXW7	4	G	A	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	5690	74	82
FBXW7	55294	broad.mit.edu	36	4	153468834	153468834	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3852-01A-01W-0900-09	TCGA-AA-3852-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018315	exon8	c.G1154A	p.R385H	FBXW7,large_intestine,NS,Substitution - Missense,0 	.	.	COAD-AA-3852	Broad	Missense_Mutation	SNP	153468834	153468834	FBXW7	4	C	T	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	5690	77	82
FBXW7	55294	broad.mit.edu	36	4	153468834	153468834	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018315	exon8	c.G1154A	p.R385H	FBXW7,large_intestine,NS,Substitution - Missense,0 	.	.	COAD-AA-A01R	Broad	Missense_Mutation	SNP	153468834	153468834	FBXW7	4	C	T	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	5690	137	82
FBXW7	55294	broad.mit.edu	36	4	153468834	153468834	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018315	exon8	c.G1154A	p.R385H	FBXW7,large_intestine,NS,Substitution - Missense,0 	.	.	COAD-AA-A03F	Broad	Missense_Mutation	SNP	153468834	153468834	FBXW7	4	C	T	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	5690	152	82
FBXW7	55294	broad.mit.edu	36	4	153468834	153468834	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018315	exon8	c.G1154A	p.R385H	FBXW7,large_intestine,NS,Substitution - Missense,0	.	.	READ-AG-3881	Broad	Missense_Mutation	SNP	153468834	153468834	FBXW7	4	C	T	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	5690	186	82
FBXW7	55294	broad.mit.edu	36	4	153468835	153468835	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018315	exon8	c.C1153T	p.R385C	FBXW7,large_intestine,NS,Substitution - Missense,+1	.	.	READ-AG-3898	Broad	Missense_Mutation	SNP	153468835	153468835	FBXW7	4	G	A	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	5690	195	82
FBXW7	55294	broad.mit.edu	36	4	153468835	153468835	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018315	exon8	c.C1153T	p.R385C	FBXW7,large_intestine,NS,Substitution - Missense,+1	.	.	READ-AG-A02N	Broad	Missense_Mutation	SNP	153468835	153468835	FBXW7	4	G	A	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	5690	221	82
FBXW7	55294	hgsc.bcm.edu	36	4	153468834	153468834	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01A-01W-0833-10	TCGA-A6-2676-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018315	exon8	c.G1154A	p.R385H	FBXW7,large_intestine,NS,Substitution - Missense,0	.	.	COAD-A6-2676	Baylor	Missense_Mutation	SNP	153468834	153468834	FBXW7	4	C	C	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	5690	4	82
FBXW7	55294	hgsc.bcm.edu	36	4	153468835	153468835	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018315	exon8	c.C1153T	p.R385C	FBXW7,large_intestine,NS,Substitution - Missense,+1	.	.	COAD-AA-3518	Baylor	Missense_Mutation	SNP	153468835	153468835	FBXW7	4	G	G	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	5690	14	82
FBXW7	55294	hgsc.bcm.edu	36	4	153468834	153468834	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018315	exon8	c.G1154A	p.R385H	FBXW7,large_intestine,NS,Substitution - Missense,0	.	.	COAD-AA-3543	Baylor	Missense_Mutation	SNP	153468834	153468834	FBXW7	4	C	C	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	5690	30	82
FBXW7	55294	hgsc.bcm.edu	36	4	153468834	153468834	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3608-01A-01W-0833-10	TCGA-AG-3608-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018315	exon8	c.G1154A	p.R385H	FBXW7,large_intestine,NS,Substitution - Missense,0	.	.	READ-AG-3608	Baylor	Missense_Mutation	SNP	153468834	153468834	FBXW7	4	C	C	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	5690	179	82
TP53	7157	hgsc.bcm.edu	36	17	7518255	7518255	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon7	c.A751T	p.I251F	TP53,soft_tissue,fat,Substitution - Missense,+1	.	.	READ-AF-2691	Baylor	Missense_Mutation	SNP	7518255	7518255	TP53	17	T	T	A	A	1	0	0	0	0	1	0	0	0	51	51	3	3	16182	157	75
TP53	7157	hgsc.bcm.edu	36	17	7518993	7518993	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-3575-01A-01W-0831-10	TCGA-AG-3575-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon6	c.T581A	p.L194H	TP53,breast,NS,Substitution - Missense,-1	.	.	READ-AG-3575	Baylor	Missense_Mutation	SNP	7518993	7518993	TP53	17	A	A	T	T	1	0	0	0	0	1	0	0	0	3	3	3	3	16182	162	74
TP53	7157	broad.mit.edu	36	17	7519179	7519179	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3896-01	TCGA-AG-3896-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon5	c.C476T	p.A159V	TP53,large_intestine,colon,Substitution - Missense,0	.	.	READ-AG-3896	Broad	Missense_Mutation	SNP	7519179	7519179	TP53	17	G	A	A	A	1	0	0	0	0	1	0	0	0	42	42	2	2	16182	194	71
TP53	7157	broad.mit.edu	36	17	7519107	7519124	+	In_Frame_Del	DEL	GAGCAGCGCTCATGGTGG	-	-	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	GAGCAGCGCTCATGGTGG	GAGCAGCGCTCATGGTGG	GAGCAGCGCTCATGGTGG	-	GAGCAGCGCTCATGGTGG	GAGCAGCGCTCATGGTGG	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001126114	exon5	c.531_548del	p.177_183del	TP53,urinary_tract,bladder,Substitution - Nonsense,0 	.	.	COAD-AA-3941	Broad	In_Frame_Del	DEL	7519107	7519124	TP53	17	GAGCAGCGCTCATGGTGG	-	-	-	1	0	1	0	1	0	0	0	0	45	45	5	5	16182	93	70
TP53	7157	hgsc.bcm.edu	36	17	7519227	7519227	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00F-01A-01W-A005-10	TCGA-AA-A00F-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon5	c.T428C	p.V143A	TP53,lung,NS,Substitution - Nonsense,+2	.	.	COAD-AA-A00F	Baylor	Missense_Mutation	SNP	7519227	7519227	TP53	17	A	A	G	G	1	0	0	0	0	1	0	0	0	6	6	3	3	16182	117	69
TP53	7157	broad.mit.edu	36	17	7519123	7519123	+	Frame_Shift_Del	DEL	G	-	-	rs68130327	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126114	exon5	c.532delC	p.H178fs	TP53,central_nervous_system,brain,Substitution - Missense,+2 	.	.	COAD-AA-3811	Broad	Frame_Shift_Del	DEL	7519123	7519123	TP53	17	G	-	-	-	1	0	1	0	1	0	0	0	0	47	47	5	5	16182	61	64
TP53	7157	hgsc.bcm.edu	36	17	7519195	7519195	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3602-01A-02W-0833-10	TCGA-AG-3602-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon5	c.G460T	p.G154C	TP53,lung,NS,Substitution - Missense,+1	.	.	READ-AG-3602	Baylor	Missense_Mutation	SNP	7519195	7519195	TP53	17	C	C	A	A	1	0	0	0	0	1	0	0	0	23	23	4	4	16182	177	59
APC	324	broad.mit.edu	36	5	112203323	112203323	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A025-01	TCGA-AG-A025-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.4079delA	p.Q1360fs	APC,large_intestine,NS,Substitution - Nonsense,+1	.	.	READ-AG-A025	Broad	Frame_Shift_Del	DEL	112203323	112203323	APC	5	A	-	-	-	1	0	1	0	1	0	0	0	0	7	7	5	5	749	218	57
TP53	7157	broad.mit.edu	36	17	7514728	7514728	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000546	exon10	c.C1024T	p.R342X	TP53,breast,NS,Substitution - Nonsense,0 	.	.	COAD-AA-3972	Broad	Nonsense_Mutation	SNP	7514728	7514728	TP53	17	G	A	A	A	1	0	0	0	0	0	1	0	0	39	39	5	1	16182	101	50
TP53	7157	broad.mit.edu	36	17	7519242	7519242	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon5	c.C413T	p.A138V	TP53,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-1	.	.	READ-AG-3893	Broad	Missense_Mutation	SNP	7519242	7519242	TP53	17	G	A	A	A	1	0	0	0	0	1	0	0	0	42	42	2	2	16182	192	45
APC	324	broad.mit.edu	36	5	112203660	112203660	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.4416delT	p.H1472fs	APC,large_intestine,NS,Substitution - Missense,-1 	.	.	COAD-AA-3941	Broad	Frame_Shift_Del	DEL	112203660	112203660	APC	5	T	-	-	-	1	0	1	0	1	0	0	0	0	52	52	5	5	749	93	42
PIK3CA	5290	broad.mit.edu	36	3	180434768	180434768	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006218	exon21	c.G3129T	p.M1043I	PIK3CA,ovary,NS,Substitution - Missense,0 	.	.	COAD-AA-3977	Broad	Missense_Mutation	SNP	180434768	180434768	PIK3CA	3	G	T	T	T	1	0	0	0	0	1	0	0	0	45	45	2	2	11758	105	41
APC	324	broad.mit.edu	36	5	112203322	112203322	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3846-01A-01W-0995-10	TCGA-AA-3846-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.C4078T	p.Q1360X	APC,large_intestine,NS,Substitution - Nonsense,0 	.	.	COAD-AA-3846	Broad	Nonsense_Mutation	SNP	112203322	112203322	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	29	29	5	2	749	73	40
APC	324	hgsc.bcm.edu	36	5	112203322	112203322	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3605-01A-01W-0833-10	TCGA-AG-3605-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.C4078T	p.Q1360X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.	READ-AG-3605	Baylor	Nonsense_Mutation	SNP	112203322	112203322	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	29	29	5	2	749	178	40
TP53	7157	broad.mit.edu	36	17	7519276	7519276	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001126114	exon5	c.T379C	p.S127P	TP53,urinary_tract,bladder,Substitution - Nonsense,-1	.	.	READ-AG-4007	Broad	Missense_Mutation	SNP	7519276	7519276	TP53	17	A	G	G	G	1	0	0	0	0	1	0	0	0	11	11	3	3	16182	202	38
FBXW7	55294	broad.mit.edu	36	4	153466739	153466739	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018315	exon9	c.C1273T	p.R425C	FBXW7,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-A6-3807	Broad	Missense_Mutation	SNP	153466739	153466739	FBXW7	4	G	A	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	5690	8	35
FBXW7	55294	broad.mit.edu	36	4	153466739	153466739	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018315	exon9	c.C1273T	p.R425C	FBXW7,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.	COAD-AA-A01K	Broad	Missense_Mutation	SNP	153466739	153466739	FBXW7	4	G	A	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	5690	134	35
FBXW7	55294	broad.mit.edu	36	4	153466738	153466738	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018315	exon9	c.G1274A	p.R425H	FBXW7,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-1 	.	.	COAD-AA-A024	Broad	Missense_Mutation	SNP	153466738	153466738	FBXW7	4	C	T	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	5690	144	35
FBXW7	55294	hgsc.bcm.edu	36	4	153466739	153466739	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018315	exon9	c.C1273G	p.R425G	FBXW7,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	COAD-A6-2677	Baylor	Missense_Mutation	SNP	153466739	153466739	FBXW7	4	G	G	C	C	1	0	0	0	0	1	0	0	0	39	39	4	4	5690	5	35
FBXW7	55294	hgsc.bcm.edu	36	4	153466739	153466739	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3560-01A-01W-0831-10	TCGA-AA-3560-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018315	exon9	c.C1273T	p.R425C	FBXW7,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	COAD-AA-3560	Baylor	Missense_Mutation	SNP	153466739	153466739	FBXW7	4	G	G	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	5690	40	35
TP53	7157	broad.mit.edu	36	17	7517790	7517796	+	Frame_Shift_Del	DEL	CTTGCGG	-	-	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	CTTGCGG	CTTGCGG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon8	c.867_873del	p.289_291del	.	.	.	COAD-AA-3955	Broad	Frame_Shift_Del	DEL	7517790	7517796	TP53	17	CTTGCGG	-	-	-	1	0	1	0	1	0	0	0	0	32	32	5	5	16182	97	32
TP53	7157	broad.mit.edu	36	17	7519267	7519267	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3875-01A-01W-0900-09	TCGA-AA-3875-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon5	c.C388T	p.L130F	TP53,central_nervous_system,brain,Substitution - Missense,0 	.	.	COAD-AA-3875	Broad	Missense_Mutation	SNP	7519267	7519267	TP53	17	G	A	A	A	1	0	0	0	0	1	0	0	0	35	35	2	2	16182	89	31
KRAS	3845	broad.mit.edu	36	12	25269829	25269829	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004985	exon4	c.G436A	p.A146T	KRAS,large_intestine,NS,Substitution - Missense,0 	.	.	COAD-AA-3681	Broad	Missense_Mutation	SNP	25269829	25269829	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	28	28	2	2	8321	51	30
KRAS	3845	broad.mit.edu	36	12	25269829	25269829	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3979-01A-01W-0995-10	TCGA-AA-3979-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004985	exon4	c.G436A	p.A146T	KRAS,large_intestine,NS,Substitution - Missense,0 	.	.	COAD-AA-3979	Broad	Missense_Mutation	SNP	25269829	25269829	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	28	28	2	2	8321	106	30
KRAS	3845	broad.mit.edu	36	12	25269829	25269829	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3986-01A-02W-0995-10	TCGA-AA-3986-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004985	exon4	c.G436A	p.A146T	KRAS,large_intestine,NS,Substitution - Missense,0 	.	.	COAD-AA-3986	Broad	Missense_Mutation	SNP	25269829	25269829	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	28	28	2	2	8321	110	30
KRAS	3845	broad.mit.edu	36	12	25269829	25269829	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3901-01	TCGA-AG-3901-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004985	exon4	c.G436A	p.A146T	KRAS,large_intestine,NS,Substitution - Missense,0	.	.	READ-AG-3901	Broad	Missense_Mutation	SNP	25269829	25269829	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	28	28	2	2	8321	196	30
KRAS	3845	broad.mit.edu	36	12	25269829	25269829	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3909-01	TCGA-AG-3909-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004985	exon4	c.G436A	p.A146T	KRAS,large_intestine,NS,Substitution - Missense,0	.	.	READ-AG-3909	Broad	Missense_Mutation	SNP	25269829	25269829	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	28	28	2	2	8321	198	30
KRAS	3845	broad.mit.edu	36	12	25269829	25269829	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A00H-01	TCGA-AG-A00H-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004985	exon4	c.G436A	p.A146T	KRAS,large_intestine,NS,Substitution - Missense,0	.	.	READ-AG-A00H	Broad	Missense_Mutation	SNP	25269829	25269829	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	28	28	2	2	8321	208	30
KRAS	3845	broad.mit.edu	36	12	25269829	25269829	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004985	exon4	c.G436A	p.A146T	KRAS,large_intestine,NS,Substitution - Missense,0	.	.	READ-AG-A02N	Broad	Missense_Mutation	SNP	25269829	25269829	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	28	28	2	2	8321	221	30
FBXW7	55294	hgsc.bcm.edu	36	4	153466817	153466817	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018315	exon9	c.C1195T	p.R399X	FBXW7,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1	.	.	COAD-A6-2672	Baylor	Nonsense_Mutation	SNP	153466817	153466817	FBXW7	4	G	G	A	A	1	0	0	0	0	0	1	0	0	37	37	5	1	5690	2	30
KRAS	3845	hgsc.bcm.edu	36	12	25269829	25269829	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_033360	exon4	c.G436A	p.A146T	KRAS,large_intestine,NS,Substitution - Missense,0	.	.	COAD-AA-3555	Baylor	Missense_Mutation	SNP	25269829	25269829	KRAS	12	C	C	T	T	1	0	0	0	0	1	0	0	0	28	28	2	2	8321	37	30
KRAS	3845	hgsc.bcm.edu	36	12	25269828	25269828	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3611-01A-01W-0833-10	TCGA-AG-3611-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon4	c.C437T	p.A146V	KRAS,large_intestine,NS,Substitution - Missense,-1	.	.	READ-AG-3611	Baylor	Missense_Mutation	SNP	25269828	25269828	KRAS	12	G	G	A	A	1	0	0	0	0	1	0	0	0	46	46	2	2	8321	181	30
APC	324	broad.mit.edu	36	5	112203097	112203097	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-4007-01	TCGA-AG-4007-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.C3853T	p.Q1285X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.	READ-AG-4007	Broad	Nonsense_Mutation	SNP	112203097	112203097	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	25	25	6	2	749	202	29
EGFR	1956	hgsc.bcm.edu	36	7	55216499	55216499	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005228	exon20	c.G2303C	p.S768T	EGFR,oesophagus,middle_third,Substitution - Missense,0	.	.	COAD-AA-3542	Baylor	Missense_Mutation	SNP	55216499	55216499	EGFR	7	G	G	C	C	1	0	0	0	0	1	0	0	0	34	34	2	2	4903	29	29
APC	324	hgsc.bcm.edu	36	5	112203310	112203310	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.G4066T	p.E1356X	APC,pancreas,NS,Substitution - coding silent,-2	.	.	COAD-AA-3542	Baylor	Nonsense_Mutation	SNP	112203310	112203310	APC	5	G	G	T	T	1	0	0	0	0	0	1	0	0	45	45	5	2	749	29	28
PIK3CA	5290	broad.mit.edu	36	3	180404247	180404247	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006218	exon5	c.T1035A	p.N345K	PIK3CA,breast,NS,Substitution - Missense,0 	.	.	COAD-AA-3837	Broad	Missense_Mutation	SNP	180404247	180404247	PIK3CA	3	T	A	A	A	1	0	0	0	0	1	0	0	0	51	51	3	3	11758	69	27
PIK3CA	5290	broad.mit.edu	36	3	180404247	180404247	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A00H-01	TCGA-AG-A00H-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006218	exon5	c.T1035A	p.N345K	PIK3CA,breast,NS,Substitution - Missense,0	.	.	READ-AG-A00H	Broad	Missense_Mutation	SNP	180404247	180404247	PIK3CA	3	T	A	A	A	1	0	0	0	0	1	0	0	0	51	51	3	3	11758	208	27
APC	324	broad.mit.edu	36	5	112203412	112203412	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.G4168T	p.E1390X	APC,large_intestine,colon,Substitution - Nonsense,0 	.	.	COAD-AA-3814	Broad	Nonsense_Mutation	SNP	112203412	112203412	APC	5	G	T	T	T	1	0	0	0	0	0	1	0	0	45	45	5	2	749	63	26
TP53	7157	hgsc.bcm.edu	36	17	7517578	7517578	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3517-01A-01W-0831-10	TCGA-AA-3517-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon9	c.G993C	p.Q331H	TP53,lung,NS,Substitution - Nonsense,-2	.	.	COAD-AA-3517	Baylor	Missense_Mutation	SNP	7517578	7517578	TP53	17	C	C	G	G	1	0	0	0	0	1	0	0	0	24	24	2	2	16182	13	26
PTEN	5728	broad.mit.edu	36	10	89614225	89614225	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000314	exon1	c.G19T	p.E7X	PTEN,central_nervous_system,brain,Substitution - Nonsense,0	.	.	READ-AG-3892	Broad	Nonsense_Mutation	SNP	89614225	89614225	PTEN	10	G	T	T	T	1	0	0	0	0	0	1	0	0	33	33	5	2	12571	191	25
APC	324	broad.mit.edu	36	5	112203250	112203250	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3666-01A-02W-0900-09	TCGA-AA-3666-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.4006delT	p.F1336fs	APC,large_intestine,NS,Substitution - Missense,-2 	.	.	COAD-AA-3666	Broad	Frame_Shift_Del	DEL	112203250	112203250	APC	5	T	-	-	-	1	0	1	0	1	0	0	0	0	52	52	5	5	749	44	23
APC	324	broad.mit.edu	36	5	112203451	112203451	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.4207delA	p.S1403fs	APC,upper_aerodigestive_tract,sinonasal_and_nasal_cavity,Substitution - Missense,+2 	.	.	COAD-AA-3812	Broad	Frame_Shift_Del	DEL	112203451	112203451	APC	5	A	-	-	-	1	0	1	0	1	0	0	0	0	7	7	5	5	749	62	23
APC	324	broad.mit.edu	36	5	112203452	112203452	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3852-01A-01W-0900-09	TCGA-AA-3852-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.4208delG	p.S1403fs	APC,large_intestine,NS,Substitution - Missense,-2 	.	.	COAD-AA-3852	Broad	Frame_Shift_Del	DEL	112203452	112203452	APC	5	G	-	-	-	1	0	1	0	1	0	0	0	0	36	36	5	5	749	77	23
APC	324	broad.mit.edu	36	5	112203250	112203250	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3855-01A-01W-0995-10	TCGA-AA-3855-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.4006delT	p.F1336fs	APC,large_intestine,NS,Substitution - Missense,-2 	.	.	COAD-AA-3855	Broad	Frame_Shift_Del	DEL	112203250	112203250	APC	5	T	-	-	-	1	0	1	0	1	0	0	0	0	52	52	5	5	749	79	23
NF2	4771	broad.mit.edu	36	22	28397836	28397836	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000268	exon11	c.C1021T	p.R341X	NF2,soft_tissue,nerve_sheath,Substitution - Nonsense,0 	.	.	COAD-AA-A01R	Broad	Nonsense_Mutation	SNP	28397836	28397836	NF2	22	C	T	T	T	1	0	0	0	0	0	1	0	0	31	31	5	1	10209	137	23
APC	324	broad.mit.edu	36	5	112203383	112203383	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3854-01A-01W-0900-09	TCGA-AA-3854-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.4139delG	p.S1380fs	APC,oesophagus,NS,Substitution - Missense,0 	.	.	COAD-AA-3854	Broad	Frame_Shift_Del	DEL	112203383	112203383	APC	5	G	-	-	-	1	0	1	0	1	0	0	0	0	36	36	5	5	749	78	22
PIK3CA	5290	broad.mit.edu	36	3	180410674	180410674	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006218	exon8	c.T1258C	p.C420R	PIK3CA,central_nervous_system,brain,Substitution - Missense,0 	.	.	COAD-AA-3673	Broad	Missense_Mutation	SNP	180410674	180410674	PIK3CA	3	T	C	C	C	1	0	0	0	0	1	0	0	0	55	55	3	3	11758	47	21
APC	324	broad.mit.edu	36	5	112202530	112202530	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.C3286T	p.R1096X	APC,large_intestine,colon,Substitution - Nonsense,0 	.	.	COAD-AA-3977	Broad	Nonsense_Mutation	SNP	112202530	112202530	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	31	31	6	1	749	105	19
APC	324	broad.mit.edu	36	5	112202530	112202530	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.C3286T	p.R1096X	APC,large_intestine,colon,Substitution - Nonsense,0 	.	.	COAD-AA-3984	Broad	Nonsense_Mutation	SNP	112202530	112202530	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	31	31	5	1	749	109	19
APC	324	broad.mit.edu	36	5	112202530	112202530	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C3286T	p.R1096X	APC,large_intestine,colon,Substitution - Nonsense,0 	.	.	COAD-AA-A01T	Broad	Nonsense_Mutation	SNP	112202530	112202530	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	31	31	5	1	749	139	19
TP53	7157	broad.mit.edu	36	17	7517580	7517581	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126116	exon5	c.595_596insT	p.Q199fs	TP53,lung,NS,Substitution - Nonsense,0 	.	.	COAD-AA-A01Z	Broad	Frame_Shift_Ins	INS	7517580	7517581	TP53	17	-	A	A	A	1	0	1	1	0	0	0	0	0	45	45	5	5	16182	142	19
APC	324	broad.mit.edu	36	5	112202530	112202530	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.C3286T	p.R1096X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.	READ-AG-3892	Broad	Nonsense_Mutation	SNP	112202530	112202530	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	31	31	5	1	749	191	19
PTEN	5728	broad.mit.edu	36	10	89675287	89675287	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3901-01	TCGA-AG-3901-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000314	exon3	c.T202A	p.Y68N	PTEN,haematopoietic_and_lymphoid_tissue,lymph_node,Substitution - Missense,0	.	.	READ-AG-3901	Broad	Missense_Mutation	SNP	89675287	89675287	PTEN	10	T	A	A	A	1	0	0	0	0	1	0	0	0	49	49	3	3	12571	196	19
TP53	7157	broad.mit.edu	36	17	7517580	7517580	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-4015-01	TCGA-AG-4015-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon9	c.C991T	p.Q331X	TP53,lung,NS,Substitution - Nonsense,0	.	.	READ-AG-4015	Broad	Nonsense_Mutation	SNP	7517580	7517580	TP53	17	G	A	A	A	1	0	0	0	0	0	1	0	0	45	45	5	2	16182	204	19
TP53	7157	broad.mit.edu	36	17	7520038	7520038	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon4	c.C374T	p.T125M	.	.	.	READ-AG-A02N	Broad	Missense_Mutation	SNP	7520038	7520038	TP53	17	G	A	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	16182	221	19
TP53	7157	hgsc.bcm.edu	36	17	7520038	7520038	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3526-01A-02W-0831-10	TCGA-AA-3526-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon4	c.C374T	p.T125M	.	.	.	COAD-AA-3526	Baylor	Missense_Mutation	SNP	7520038	7520038	TP53	17	G	G	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	16182	21	19
APC	324	hgsc.bcm.edu	36	5	112202530	112202530	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.C3286T	p.R1096X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.	COAD-AA-A00L	Baylor	Nonsense_Mutation	SNP	112202530	112202530	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	31	31	5	1	749	120	19
APC	324	hgsc.bcm.edu	36	5	112202530	112202530	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3587-01A-01W-0831-10	TCGA-AG-3587-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.C3286T	p.R1096X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.	READ-AG-3587	Baylor	Nonsense_Mutation	SNP	112202530	112202530	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	31	31	6	1	749	170	19
TP53	7157	broad.mit.edu	36	17	7514743	7514743	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000546	exon10	c.C1009T	p.R337C	TP53,oesophagus,upper_third,Substitution - Missense,0 	.	.	COAD-AA-3869	Broad	Missense_Mutation	SNP	7514743	7514743	TP53	17	G	A	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	16182	86	18
APC	324	broad.mit.edu	36	5	112203289	112203289	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.C4045T	p.Q1349X	APC,large_intestine,colon,Substitution - Nonsense,0 	.	.	COAD-AA-A00O	Broad	Nonsense_Mutation	SNP	112203289	112203289	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	29	29	5	2	749	122	18
APC	324	broad.mit.edu	36	5	112203289	112203289	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.C4045T	p.Q1349X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.	READ-AG-3881	Broad	Nonsense_Mutation	SNP	112203289	112203289	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	29	29	5	2	749	186	18
ABL1	25	hgsc.bcm.edu	36	9	132738212	132738212	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005157	exon6	c.T1052C	p.M351T	ABL1,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	COAD-AA-A00A	Baylor	Missense_Mutation	SNP	132738212	132738212	ABL1	9	T	T	C	C	1	0	0	0	0	1	0	0	0	51	51	3	3	92	114	18
APC	324	hgsc.bcm.edu	36	5	112203289	112203289	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.C4045T	p.Q1349X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.	COAD-AA-A00K	Baylor	Nonsense_Mutation	SNP	112203289	112203289	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	29	29	5	2	749	119	18
APC	324	hgsc.bcm.edu	36	5	112203289	112203289	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3609-01A-02W-0833-10	TCGA-AG-3609-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.C4045T	p.Q1349X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.	READ-AG-3609	Baylor	Nonsense_Mutation	SNP	112203289	112203289	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	29	29	6	2	749	180	18
PIK3CA	5290	broad.mit.edu	36	3	180434701	180434701	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A00N-01A-02W-A00E-09	TCGA-AA-A00N-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006218	exon21	c.A3062G	p.Y1021C	PIK3CA,ovary,NS,Substitution - Missense,0 	.	.	COAD-AA-A00N	Broad	Missense_Mutation	SNP	180434701	180434701	PIK3CA	3	A	G	G	G	1	0	0	0	0	1	0	0	0	14	14	3	3	11758	121	17
APC	324	broad.mit.edu	36	5	112203145	112203145	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AF-3913-01	TCGA-AF-3913-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.3901delC	p.P1301fs	APC,central_nervous_system,cerebellum,Substitution - Missense,-1	.	.	READ-AF-3913	Broad	Frame_Shift_Del	DEL	112203145	112203145	APC	5	C	-	-	-	1	0	1	0	1	0	0	0	0	30	30	5	5	749	160	17
APC	324	broad.mit.edu	36	5	112203257	112203257	+	Nonsense_Mutation	SNP	C	G	G	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.C4013G	p.S1338X	APC,large_intestine,NS,Substitution - Missense,-2	.	.	READ-AG-3893	Broad	Nonsense_Mutation	SNP	112203257	112203257	APC	5	C	G	G	G	1	0	0	0	0	0	1	0	0	29	29	5	2	749	192	17
PIK3CA	5290	broad.mit.edu	36	3	180399570	180399570	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006218	exon2	c.G263A	p.R88Q	PIK3CA,central_nervous_system,brain,Substitution - Missense,0 	.	.	COAD-AA-3837	Broad	Missense_Mutation	SNP	180399570	180399570	PIK3CA	3	G	A	A	A	1	0	0	0	0	1	0	0	0	37	37	1	1	11758	69	16
PIK3CA	5290	broad.mit.edu	36	3	180399570	180399570	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006218	exon2	c.G263A	p.R88Q	PIK3CA,central_nervous_system,brain,Substitution - Missense,0 	.	.	COAD-AA-3848	Broad	Missense_Mutation	SNP	180399570	180399570	PIK3CA	3	G	A	A	A	1	0	0	0	0	1	0	0	0	37	37	1	1	11758	74	16
APC	324	broad.mit.edu	36	5	112201816	112201816	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C2572T	p.R858X	APC,large_intestine,NS,Substitution - Nonsense,0 	.	.	COAD-AA-3856	Broad	Nonsense_Mutation	SNP	112201816	112201816	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	27	27	5	1	749	80	16
PIK3CA	5290	broad.mit.edu	36	3	180399570	180399570	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006218	exon2	c.G263A	p.R88Q	PIK3CA,central_nervous_system,brain,Substitution - Missense,0 	.	.	COAD-AA-3864	Broad	Missense_Mutation	SNP	180399570	180399570	PIK3CA	3	G	A	A	A	1	0	0	0	0	1	0	0	0	37	37	1	1	11758	83	16
APC	324	broad.mit.edu	36	5	112201816	112201816	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3870-01A-01W-0995-10	TCGA-AA-3870-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C2572T	p.R858X	APC,large_intestine,NS,Substitution - Nonsense,0 	.	.	COAD-AA-3870	Broad	Nonsense_Mutation	SNP	112201816	112201816	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	27	27	5	1	749	87	16
APC	324	broad.mit.edu	36	5	112203504	112203504	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3872-01A-01W-0995-10	TCGA-AA-3872-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.4260delA	p.T1420fs	.	.	.	COAD-AA-3872	Broad	Frame_Shift_Del	DEL	112203504	112203504	APC	5	A	-	-	-	1	0	1	0	1	0	0	0	0	6	6	5	5	749	88	16
PIK3CA	5290	broad.mit.edu	36	3	180399570	180399570	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006218	exon2	c.G263A	p.R88Q	PIK3CA,central_nervous_system,brain,Substitution - Missense,0 	.	.	COAD-AA-3977	Broad	Missense_Mutation	SNP	180399570	180399570	PIK3CA	3	G	A	A	A	1	0	0	0	0	1	0	0	0	37	37	1	1	11758	105	16
APC	324	broad.mit.edu	36	5	112201816	112201816	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01K-01A-01W-A00E-09	TCGA-AA-A01K-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C2572T	p.R858X	APC,large_intestine,NS,Substitution - Nonsense,0 	.	.	COAD-AA-A01K	Broad	Nonsense_Mutation	SNP	112201816	112201816	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	27	27	6	1	749	134	16
APC	324	broad.mit.edu	36	5	112201816	112201816	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.C2572T	p.R858X	APC,large_intestine,NS,Substitution - Nonsense,0 	.	.	COAD-AA-A01R	Broad	Nonsense_Mutation	SNP	112201816	112201816	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	27	27	6	1	749	137	16
APC	324	broad.mit.edu	36	5	112201816	112201816	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C2572T	p.R858X	APC,large_intestine,NS,Substitution - Nonsense,0 	.	.	COAD-AA-A02W	Broad	Nonsense_Mutation	SNP	112201816	112201816	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	27	27	6	1	749	150	16
APC	324	broad.mit.edu	36	5	112201816	112201816	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3896-01	TCGA-AG-3896-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127511	exon14	c.C2572T	p.R858X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.	READ-AG-3896	Broad	Nonsense_Mutation	SNP	112201816	112201816	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	27	27	5	1	749	194	16
APC	324	broad.mit.edu	36	5	112201816	112201816	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-4001-01	TCGA-AG-4001-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127511	exon14	c.C2572T	p.R858X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.	READ-AG-4001	Broad	Nonsense_Mutation	SNP	112201816	112201816	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	27	27	5	1	749	200	16
VHL	7428	broad.mit.edu	36	3	10166563	10166563	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_198156	exon2	c.G433A	p.E145K	VHL,kidney,NS,Substitution - Nonsense,0	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	10166563	10166563	VHL	3	G	G	A	A	1	0	0	0	0	1	0	0	0	37	37	1	1	16958	205	16
PTEN	5728	broad.mit.edu	36	10	89701856	89701856	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000314	exon6	c.G494A	p.G165E	PTEN,central_nervous_system,brain,Substitution - Missense,0	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	89701856	89701856	PTEN	10	G	G	A	A	1	0	0	0	0	1	0	0	0	41	41	2	2	12571	205	16
APC	324	broad.mit.edu	36	5	112201816	112201816	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A01W-01	TCGA-AG-A01W-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127511	exon14	c.C2572T	p.R858X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.	READ-AG-A01W	Broad	Nonsense_Mutation	SNP	112201816	112201816	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	27	27	5	1	749	215	16
APC	324	hgsc.bcm.edu	36	5	112201816	112201816	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3561-01A-01W-0831-10	TCGA-AA-3561-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.C2572T	p.R858X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.	COAD-AA-3561	Baylor	Nonsense_Mutation	SNP	112201816	112201816	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	27	27	5	1	749	41	16
APC	324	hgsc.bcm.edu	36	5	112201816	112201816	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00U-01A-01W-A005-10	TCGA-AA-A00U-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.C2572T	p.R858X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.	COAD-AA-A00U	Baylor	Nonsense_Mutation	SNP	112201816	112201816	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	27	27	6	1	749	125	16
APC	324	hgsc.bcm.edu	36	5	112201816	112201816	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.C2572T	p.R858X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.	COAD-AA-A00W	Baylor	Nonsense_Mutation	SNP	112201816	112201816	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	27	27	5	1	749	126	16
ERBB2	2064	broad.mit.edu	36	17	35134526	35134526	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005862	exon23	c.G2239T	p.V747L	ERBB2,central_nervous_system,brain,Substitution - Missense,-1 	.	.	COAD-AA-3994	Broad	Missense_Mutation	SNP	35134526	35134526	ERBB2	17	G	T	T	T	1	0	0	0	0	1	0	0	0	48	48	2	2	5142	112	15
PTPN11	5781	broad.mit.edu	36	12	111372574	111372574	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002834	exon3	c.G207T	p.E69D	PTPN11,central_nervous_system,brain,Substitution - Missense,+2 	.	.	COAD-AA-3977	Broad	Missense_Mutation	SNP	111372574	111372574	PTPN11	12	G	T	T	T	1	0	0	0	0	1	0	0	0	33	33	2	2	12613	105	14
TP53	7157	broad.mit.edu	36	17	7520074	7520074	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A02H-01A-01W-A00E-09	TCGA-AA-A02H-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001126114	exon4	c.T338G	p.F113C	TP53,central_nervous_system,brain,Substitution - Missense,-1 	.	.	COAD-AA-A02H	Broad	Missense_Mutation	SNP	7520074	7520074	TP53	17	A	C	C	C	1	0	0	0	0	1	0	0	0	9	9	3	3	16182	147	14
APC	324	broad.mit.edu	36	5	112203318	112203318	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-AG-4015-01	TCGA-AG-4015-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.T4074A	p.Y1358X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.	READ-AG-4015	Broad	Nonsense_Mutation	SNP	112203318	112203318	APC	5	T	A	A	A	1	0	0	0	0	0	1	0	0	51	51	5	3	749	204	14
TP53	7157	hgsc.bcm.edu	36	17	7518955	7518955	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon6	c.G619A	p.D207N	.	.	.	COAD-AA-3520	Baylor	Missense_Mutation	SNP	7518955	7518955	TP53	17	C	C	T	T	1	0	0	0	0	1	0	0	0	30	30	2	2	16182	16	14
APC	324	hgsc.bcm.edu	36	5	112203134	112203134	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.C3890A	p.S1297X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.	COAD-AA-3553	Baylor	Nonsense_Mutation	SNP	112203134	112203134	APC	5	C	C	A	A	1	0	0	0	0	0	1	0	0	29	29	5	2	749	35	14
APC	324	hgsc.bcm.edu	36	5	112203227	112203227	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.C3983G	p.S1328X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.	READ-AF-2691	Baylor	Nonsense_Mutation	SNP	112203227	112203227	APC	5	C	C	G	G	1	0	0	0	0	0	1	0	0	29	29	5	2	749	157	14
APC	324	hgsc.bcm.edu	36	5	112203227	112203227	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3602-01A-02W-0833-10	TCGA-AG-3602-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.C3983G	p.S1328X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.	READ-AG-3602	Baylor	Nonsense_Mutation	SNP	112203227	112203227	APC	5	C	C	G	G	1	0	0	0	0	0	1	0	0	29	29	5	2	749	177	14
TP53	7157	broad.mit.edu	36	17	7520115	7520118	+	Frame_Shift_Del	DEL	GGAA	-	-	novel	unknown	TCGA-AA-A00O-01A-02W-A00E-09	TCGA-AA-A00O-10A-01W-A00E-09	GGAA	GGAA	GGAA	-	GGAA	GGAA	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001126114	exon4	c.294_297del	p.98_99del	.	.	.	COAD-AA-A00O	Broad	Frame_Shift_Del	DEL	7520115	7520118	TP53	17	GGAA	-	-	-	1	0	1	0	1	0	0	0	0	43	43	5	5	16182	122	13
APC	324	broad.mit.edu	36	5	112203389	112203389	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127511	exon14	c.C4145T	p.S1382L	APC,large_intestine,colon,Substitution - Nonsense,0	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	112203389	112203389	APC	5	C	C	T	T	1	0	0	0	0	1	0	0	0	31	31	1	1	749	205	13
APC	324	broad.mit.edu	36	5	112203070	112203070	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A01Y-01	TCGA-AG-A01Y-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.C3826T	p.Q1276X	APC,large_intestine,right,Substitution - Nonsense,0	.	.	READ-AG-A01Y	Broad	Nonsense_Mutation	SNP	112203070	112203070	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	17	17	5	2	749	216	13
APC	324	hgsc.bcm.edu	36	5	112203070	112203070	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-3400-01A-01W-0831-10	TCGA-AF-3400-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.C3826T	p.Q1276X	APC,large_intestine,right,Substitution - Nonsense,0	.	.	READ-AF-3400	Baylor	Nonsense_Mutation	SNP	112203070	112203070	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	17	17	5	2	749	159	13
TP53	7157	broad.mit.edu	36	17	7520086	7520086	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3666-01A-02W-0900-09	TCGA-AA-3666-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001126114	exon4	c.T326G	p.F109C	.	.	.	COAD-AA-3666	Broad	Missense_Mutation	SNP	7520086	7520086	TP53	17	A	C	C	C	1	0	0	0	0	1	0	0	0	9	9	3	3	16182	44	12
APC	324	broad.mit.edu	36	5	112201993	112201994	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000038	exon16	c.2803_2804insA	p.Y935_N936delinsX	APC,large_intestine,colon,Substitution - Nonsense,-2 	.	.	COAD-AA-A029	Broad	Frame_Shift_Ins	INS	112201993	112201994	APC	5	-	A	A	A	1	0	1	1	0	0	0	0	0	61	61	5	5	749	145	12
APC	324	broad.mit.edu	36	5	112203092	112203092	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.3848delC	p.T1283fs	APC,stomach,NS,Substitution - Missense,0 	.	.	COAD-AA-A02O	Broad	Frame_Shift_Del	DEL	112203092	112203092	APC	5	C	-	-	-	1	0	1	0	1	0	0	0	0	18	18	5	5	749	149	12
TP53	7157	broad.mit.edu	36	17	7520315	7520316	+	Splice_Site	INS	-	CT	CT	novel		TCGA-AG-A026-01	TCGA-AG-A026-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126112	exon4	c.97_98insAG	p.S33fs	.	.	.	READ-AG-A026	Broad	Splice_Site	INS	7520315	7520316	TP53	17	-	CT	CT	CT	1	0	1	1	0	0	0	1	0	10	10	5	5	16182	219	12
PIK3CA	5290	broad.mit.edu	36	3	180399623	180399623	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3852-01A-01W-0900-09	TCGA-AA-3852-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006218	exon2	c.G316C	p.G106R	PIK3CA,large_intestine,NS,Substitution - Missense,-1 	.	.	COAD-AA-3852	Broad	Missense_Mutation	SNP	180399623	180399623	PIK3CA	3	G	C	C	C	1	0	0	0	0	1	0	0	0	35	35	2	2	11758	77	11
APC	324	broad.mit.edu	36	5	112201995	112201995	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01I-01A-02W-A00E-09	TCGA-AA-A01I-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.C2751A	p.Y917X	APC,large_intestine,colon,Substitution - Nonsense,0 	.	.	COAD-AA-A01I	Broad	Nonsense_Mutation	SNP	112201995	112201995	APC	5	C	A	A	A	1	0	0	0	0	0	1	0	0	17	17	5	2	749	133	11
APC	324	broad.mit.edu	36	5	112203548	112203549	+	Frame_Shift_Ins	INS	-	TT	TT	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	-	-	-	TT	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000038	exon16	c.4358_4359insTT	p.P1453fs	APC,upper_aerodigestive_tract,sinonasal_and_nasal_cavity,Substitution - Missense,+1 	.	.	COAD-AA-A01Z	Broad	Frame_Shift_Ins	INS	112203548	112203549	APC	5	-	TT	TT	TT	1	0	1	1	0	0	0	0	0	24	24	5	5	749	142	11
APC	324	broad.mit.edu	36	5	112203328	112203329	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-A02J-01A-01W-A00E-09	TCGA-AA-A02J-10A-01W-A00E-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000038	exon16	c.4138_4139insC	p.T1380fs	.	.	.	COAD-AA-A02J	Broad	Frame_Shift_Ins	INS	112203328	112203329	APC	5	-	C	C	C	1	0	1	1	0	0	0	0	0	10	10	6	5	749	148	11
SMARCB1	6598	broad.mit.edu	36	22	22463964	22463966	+	In_Frame_Del	DEL	TTC	-	-	novel	unknown	TCGA-AA-A02W-01A-01W-A00E-09	TCGA-AA-A02W-10A-01W-A00E-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003073	exon2	c.115_117del	p.39_39del	.	.	.	COAD-AA-A02W	Broad	In_Frame_Del	DEL	22463964	22463966	SMARCB1	22	TTC	-	-	-	1	0	1	0	1	0	0	0	0	60	60	5	5	14590	150	11
APC	324	hgsc.bcm.edu	36	5	112201995	112201995	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3556-01A-01W-0831-10	TCGA-AA-3556-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.C2751A	p.Y917X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.	COAD-AA-3556	Baylor	Nonsense_Mutation	SNP	112201995	112201995	APC	5	C	C	A	A	1	0	0	0	0	0	1	0	0	17	17	5	2	749	38	11
PTEN	5728	broad.mit.edu	36	10	89682869	89682869	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000314	exon5	c.373delA	p.K125fs	PTEN,central_nervous_system,brain,Substitution - Missense,+2 	.	.	COAD-AA-3692	Broad	Frame_Shift_Del	DEL	89682869	89682869	PTEN	10	A	-	-	-	1	0	1	0	1	0	0	0	0	13	13	5	5	12571	55	10
TP53	7157	broad.mit.edu	36	17	7517606	7517606	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3856-01A-01W-0900-09	TCGA-AA-3856-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon9	c.965delC	p.P322fs	.	.	.	COAD-AA-3856	Broad	Frame_Shift_Del	DEL	7517606	7517606	TP53	17	G	-	-	-	1	0	1	0	1	0	0	0	0	47	47	5	5	16182	80	10
TP53	7157	broad.mit.edu	36	17	7520233	7520233	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3860-01A-02W-0900-09	TCGA-AA-3860-10A-01W-0902-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon4	c.179delC	p.P60fs	TP53,central_nervous_system,brain,Substitution - Missense,0 	.	.	COAD-AA-3860	Broad	Frame_Shift_Del	DEL	7520233	7520233	TP53	17	G	-	-	-	1	0	1	0	1	0	0	0	0	47	47	5	5	16182	82	10
TP53	7157	broad.mit.edu	36	17	7517616	7517617	+	Frame_Shift_Ins	INS	-	TGGC	TGGC	novel		TCGA-AG-3898-01	TCGA-AG-3898-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126116	exon5	c.559_560insGCCA	p.K187fs	TP53,haematopoietic_and_lymphoid_tissue,NS,Substitution - Nonsense,0	.	.	READ-AG-3898	Broad	Frame_Shift_Ins	INS	7517616	7517617	TP53	17	-	TGGC	TGGC	TGGC	1	0	1	1	0	0	0	0	0	64	64	5	5	16182	195	10
APC	324	broad.mit.edu	36	5	112203052	112203052	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.G3808T	p.G1270X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.	READ-AG-3902	Broad	Nonsense_Mutation	SNP	112203052	112203052	APC	5	G	T	T	T	1	0	0	0	0	0	1	0	0	35	35	5	2	749	197	10
WT1	7490	hgsc.bcm.edu	36	11	32370141	32370141	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198551	exon9	c.G749A	p.R250Q	WT1,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	COAD-A6-2672	Baylor	Missense_Mutation	SNP	32370141	32370141	WT1	11	C	C	T	T	1	0	0	0	0	1	0	0	0	23	23	1	1	17202	2	10
APC	324	hgsc.bcm.edu	36	5	112203247	112203247	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.G4003T	p.E1335X	APC,large_intestine,right,Substitution - Nonsense,0	.	.	READ-AG-3593	Baylor	Nonsense_Mutation	SNP	112203247	112203247	APC	5	G	G	T	T	1	0	0	0	0	0	1	0	0	45	45	5	2	749	171	10
TP53	7157	broad.mit.edu	36	17	7520042	7520042	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon4	c.T370G	p.C124G	TP53,ovary,NS,Substitution - Missense,0 	.	.	COAD-AA-3693	Broad	Missense_Mutation	SNP	7520042	7520042	TP53	17	A	C	C	C	1	0	0	0	0	1	0	0	0	5	5	3	3	16182	56	9
APC	324	broad.mit.edu	36	5	112179160	112179160	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3982-01A-02W-0995-10	TCGA-AA-3982-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon7	c.C850T	p.R284X	APC,large_intestine,colon,Substitution - Nonsense,0 	.	.	COAD-AA-3982	Broad	Nonsense_Mutation	SNP	112179160	112179160	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	31	31	6	1	749	108	9
APC	324	broad.mit.edu	36	5	112203493	112203493	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AY-4071-01A-01W-1073-09	TCGA-AY-4071-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.4249delA	p.R1417fs	APC,large_intestine,NS,Substitution - Nonsense,0 	.	.	COAD-AY-4071	Broad	Frame_Shift_Del	DEL	112203493	112203493	APC	5	A	-	-	-	1	0	1	0	1	0	0	0	0	7	7	5	5	749	155	9
APC	324	broad.mit.edu	36	5	112179160	112179160	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A032-01	TCGA-AG-A032-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127511	exon7	c.C850T	p.R284X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.	READ-AG-A032	Broad	Nonsense_Mutation	SNP	112179160	112179160	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	31	31	6	1	749	223	9
APC	324	broad.mit.edu	36	5	112179160	112179160	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A036-01	TCGA-AG-A036-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127511	exon7	c.C850T	p.R284X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.	READ-AG-A036	Broad	Nonsense_Mutation	SNP	112179160	112179160	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	31	31	6	1	749	224	9
APC	324	hgsc.bcm.edu	36	5	112203406	112203406	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3612-01A-01W-0833-10	TCGA-AG-3612-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.C4162T	p.Q1388X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.	READ-AG-3612	Baylor	Nonsense_Mutation	SNP	112203406	112203406	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	29	29	5	2	749	182	9
FBXW7	55294	broad.mit.edu	36	4	153468811	153468811	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3672-01A-01W-0900-09	TCGA-AA-3672-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018315	exon8	c.1177delA	p.R393fs	.	.	.	COAD-AA-3672	Broad	Frame_Shift_Del	DEL	153468811	153468811	FBXW7	4	T	-	-	-	1	0	1	0	1	0	0	0	0	56	56	5	5	5690	46	8
APC	324	broad.mit.edu	36	5	112203245	112203245	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3858-01A-01W-0900-09	TCGA-AA-3858-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.4001delT	p.V1334fs	APC,large_intestine,right,Substitution - Nonsense,-2 	.	.	COAD-AA-3858	Broad	Frame_Shift_Del	DEL	112203245	112203245	APC	5	T	-	-	-	1	0	1	0	1	0	0	0	0	60	60	5	5	749	81	8
ERBB2	2064	broad.mit.edu	36	17	35133746	35133746	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3869-01A-01W-0995-10	TCGA-AA-3869-10A-01W-0995-10	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005862	exon22	c.T2174C	p.L725S	ERBB2,lung,NS,Substitution - Missense,+1 	.	.	COAD-AA-3869	Broad	Missense_Mutation	SNP	35133746	35133746	ERBB2	17	T	C	C	C	1	0	0	0	0	1	0	0	0	63	63	3	3	5142	86	8
SMAD4	4089	broad.mit.edu	36	18	46858786	46858786	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3887-01	TCGA-AG-3887-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005359	exon12	c.A1610T	p.D537V	SMAD4,large_intestine,NS,Substitution - Missense,+1	.	.	READ-AG-3887	Broad	Missense_Mutation	SNP	46858786	46858786	SMAD4	18	A	T	T	T	1	0	0	0	0	1	0	0	0	10	10	3	3	14576	189	8
SMAD4	4089	broad.mit.edu	36	18	46858786	46858786	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A020-01	TCGA-AG-A020-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005359	exon12	c.A1610G	p.D537G	SMAD4,large_intestine,NS,Substitution - Missense,+1	.	.	READ-AG-A020	Broad	Missense_Mutation	SNP	46858786	46858786	SMAD4	18	A	G	G	G	1	0	0	0	0	1	0	0	0	10	10	3	3	14576	217	8
SMAD4	4089	broad.mit.edu	36	18	46845917	46845917	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005359	exon9	c.G1082A	p.R361H	SMAD4,small_intestine,duodenum,Substitution - Missense,+1 	.	.	COAD-AA-3692	Broad	Missense_Mutation	SNP	46845917	46845917	SMAD4	18	G	A	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	14576	55	7
SMAD4	4089	broad.mit.edu	36	18	46845917	46845917	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005359	exon9	c.G1082A	p.R361H	SMAD4,small_intestine,duodenum,Substitution - Missense,+1 	.	.	COAD-AA-3811	Broad	Missense_Mutation	SNP	46845917	46845917	SMAD4	18	G	A	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	14576	61	7
TP53	7157	broad.mit.edu	36	17	7520307	7520308	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3858-01A-01W-0900-09	TCGA-AA-3858-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126112	exon4	c.105_106insT	p.L35fs	.	.	.	COAD-AA-3858	Broad	Frame_Shift_Ins	INS	7520307	7520308	TP53	17	-	A	A	A	1	0	1	1	0	0	0	0	0	25	25	5	5	16182	81	7
APC	324	broad.mit.edu	36	5	112203386	112203386	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.G4142A	p.R1381H	.	.	.	COAD-AA-3864	Broad	Missense_Mutation	SNP	112203386	112203386	APC	5	G	A	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	749	83	7
PTEN	5728	broad.mit.edu	36	10	89614247	89614247	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000314	exon1	c.G41T	p.R14M	PTEN,vulva,NS,Substitution - Missense,+1 	.	.	COAD-AA-A010	Broad	Missense_Mutation	SNP	89614247	89614247	PTEN	10	G	T	T	T	1	0	0	0	0	1	0	0	0	35	35	2	2	12571	128	7
PIK3CA	5290	broad.mit.edu	36	3	180434794	180434794	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006218	exon21	c.C3155A	p.T1052K	PIK3CA,lung,NS,Substitution - Missense,0 	.	.	COAD-AA-A01V	Broad	Missense_Mutation	SNP	180434794	180434794	PIK3CA	3	C	A	A	A	1	0	0	0	0	1	0	0	0	17	17	2	2	11758	140	7
SMAD4	4089	broad.mit.edu	36	18	46845917	46845917	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-4005-01	TCGA-AG-4005-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005359	exon9	c.G1082A	p.R361H	SMAD4,small_intestine,duodenum,Substitution - Missense,+1	.	.	READ-AG-4005	Broad	Missense_Mutation	SNP	46845917	46845917	SMAD4	18	G	A	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	14576	201	7
NF2	4771	broad.mit.edu	36	22	28365126	28365126	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000268	exon3	c.C288A	p.F96L	.	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	28365126	28365126	NF2	22	C	C	A	A	1	0	0	0	0	1	0	0	0	32	32	2	2	10209	205	7
SMAD4	4089	broad.mit.edu	36	18	46845917	46845917	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A011-01	TCGA-AG-A011-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005359	exon9	c.G1082A	p.R361H	SMAD4,small_intestine,duodenum,Substitution - Missense,+1	.	.	READ-AG-A011	Baylor+Broad	Missense_Mutation	SNP	46845917	46845917	SMAD4	18	G	G	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	14576	210	7
KRAS	3845	broad.mit.edu	36	12	25289522	25289522	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A025-01	TCGA-AG-A025-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004985	exon2	c.C64A	p.Q22K	KRAS,haematopoietic_and_lymphoid_tissue,head_neck,Substitution - coding silent,+2	.	.	READ-AG-A025	Broad	Missense_Mutation	SNP	25289522	25289522	KRAS	12	G	T	T	T	1	0	0	0	0	1	0	0	0	48	48	2	2	8321	218	7
SMAD4	4089	hgsc.bcm.edu	36	18	46845917	46845917	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01A-01W-0833-10	TCGA-A6-2676-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005359	exon9	c.G1082A	p.R361H	SMAD4,small_intestine,duodenum,Substitution - Missense,+1	.	.	COAD-A6-2676	Baylor	Missense_Mutation	SNP	46845917	46845917	SMAD4	18	G	G	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	14576	4	7
SMAD4	4089	hgsc.bcm.edu	36	18	46845917	46845917	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_005359	exon9	c.G1082A	p.R361H	SMAD4,small_intestine,duodenum,Substitution - Missense,+1	.	.	COAD-AA-3558	Baylor	Missense_Mutation	SNP	46845917	46845917	SMAD4	18	G	G	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	14576	39	7
SMAD4	4089	hgsc.bcm.edu	36	18	46845917	46845917	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005359	exon9	c.G1082A	p.R361H	SMAD4,small_intestine,duodenum,Substitution - Missense,+1	.	.	COAD-AA-A00K	Baylor	Missense_Mutation	SNP	46845917	46845917	SMAD4	18	G	G	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	14576	119	7
SMAD4	4089	hgsc.bcm.edu	36	18	46858785	46858785	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005359	exon12	c.G1609T	p.D537Y	SMAD4,large_intestine,NS,Substitution - Missense,0	.	.	READ-AG-A008	Baylor	Missense_Mutation	SNP	46858785	46858785	SMAD4	18	G	G	T	T	1	0	0	0	0	1	0	0	0	33	33	2	2	14576	206	7
APC	324	broad.mit.edu	36	5	112144491	112144491	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3807-01A-01W-0995-10	TCGA-A6-3807-11A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon5	c.C667T	p.R223X	APC,large_intestine,rectum,Substitution - Nonsense,0 	.	.	COAD-A6-3807	Broad	Nonsense_Mutation	SNP	112144491	112144491	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	19	19	5	1	749	8	6
APC	324	broad.mit.edu	36	5	112203102	112203102	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-A6-3810-01A-01W-0995-10	TCGA-A6-3810-11A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.3858delA	p.I1286fs	.	.	.	COAD-A6-3810	Broad	Frame_Shift_Del	DEL	112203102	112203102	APC	5	A	-	-	-	1	0	1	0	1	0	0	0	0	15	15	5	5	749	10	6
APC	324	broad.mit.edu	36	5	112203595	112203595	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C4351T	p.Q1451X	APC,large_intestine,NS,Substitution - Nonsense,0 	.	.	COAD-AA-3530	Broad	Nonsense_Mutation	SNP	112203595	112203595	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	25	25	5	2	749	24	6
APC	324	broad.mit.edu	36	5	112144491	112144491	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon5	c.C667T	p.R223X	APC,large_intestine,rectum,Substitution - Nonsense,0 	.	.	COAD-AA-3695	Broad	Nonsense_Mutation	SNP	112144491	112144491	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	19	19	5	1	749	57	6
FBXW7	55294	broad.mit.edu	36	4	153464896	153464896	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3831-01A-01W-0900-09	TCGA-AA-3831-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018315	exon10	c.C1505T	p.S502L	FBXW7,large_intestine,colon,Substitution - Missense,0 	.	.	COAD-AA-3831	Broad	Missense_Mutation	SNP	153464896	153464896	FBXW7	4	G	A	A	A	1	0	0	0	0	1	0	0	0	37	37	1	1	5690	67	6
APC	324	broad.mit.edu	36	5	112144491	112144491	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon5	c.C667T	p.R223X	APC,large_intestine,rectum,Substitution - Nonsense,0 	.	.	COAD-AA-3952	Broad	Nonsense_Mutation	SNP	112144491	112144491	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	19	19	5	1	749	96	6
APC	324	broad.mit.edu	36	5	112179103	112179103	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3973-01A-01W-0995-10	TCGA-AA-3973-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon7	c.C793T	p.R265X	APC,large_intestine,NS,Substitution - Nonsense,0 	.	.	COAD-AA-3973	Broad	Nonsense_Mutation	SNP	112179103	112179103	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	19	19	6	1	749	102	6
RUNX1	861	broad.mit.edu	36	21	35153653	35153653	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001754	exon6	c.C601G	p.R201G	RUNX1,haematopoietic_and_lymphoid_tissue,NS,Substitution - Nonsense,0 	.	.	COAD-AA-A01T	Broad	Missense_Mutation	SNP	35153653	35153653	RUNX1	21	G	C	C	C	1	0	0	0	0	1	0	0	0	39	39	4	4	13570	139	6
APC	324	broad.mit.edu	36	5	112203446	112203446	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.G4202A	p.S1401N	.	.	.	COAD-AA-A01V	Broad	Missense_Mutation	SNP	112203446	112203446	APC	5	G	A	A	A	1	0	0	0	0	1	0	0	0	34	34	2	2	749	140	6
FBXW7	55294	broad.mit.edu	36	4	153464896	153464896	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018315	exon10	c.C1505T	p.S502L	FBXW7,large_intestine,colon,Substitution - Missense,0 	.	.	COAD-AA-A01Z	Broad	Missense_Mutation	SNP	153464896	153464896	FBXW7	4	G	A	A	A	1	0	0	0	0	1	0	0	0	37	37	1	1	5690	142	6
SMAD4	4089	broad.mit.edu	36	18	46845805	46845805	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A02O-01A-21W-A096-10	TCGA-AA-A02O-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005359	exon9	c.T970C	p.C324R	SMAD4,thyroid,NS,Substitution - Missense,-1 	.	.	COAD-AA-A02O	Broad	Missense_Mutation	SNP	46845805	46845805	SMAD4	18	T	C	C	C	1	0	0	0	0	1	0	0	0	59	59	3	3	14576	149	6
APC	324	broad.mit.edu	36	5	112203073	112203073	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3727-01	TCGA-AG-3727-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127511	exon14	c.G3829T	p.E1277X	APC,large_intestine,right,Substitution - Nonsense,0	.	.	READ-AG-3727	Broad	Nonsense_Mutation	SNP	112203073	112203073	APC	5	G	T	T	T	1	0	0	0	0	0	1	0	0	41	41	5	2	749	184	6
APC	324	broad.mit.edu	36	5	112179103	112179103	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127511	exon7	c.C793T	p.R265X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.	READ-AG-3883	Broad	Nonsense_Mutation	SNP	112179103	112179103	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	19	19	5	1	749	188	6
APC	324	broad.mit.edu	36	5	112201992	112201992	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AG-3890-01	TCGA-AG-3890-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.2748delT	p.T916fs	.	.	.	READ-AG-3890	Broad	Frame_Shift_Del	DEL	112201992	112201992	APC	5	T	-	-	-	1	0	1	0	1	0	0	0	0	56	56	5	5	749	190	6
APC	324	broad.mit.edu	36	5	112144491	112144491	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon5	c.C667T	p.R223X	APC,large_intestine,rectum,Substitution - Nonsense,0	.	.	READ-AG-A02G	Broad	Nonsense_Mutation	SNP	112144491	112144491	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	19	19	5	1	749	220	6
APC	324	hgsc.bcm.edu	36	5	112203635	112203635	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01A-02W-A005-10	TCGA-AA-A00J-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.T4391C	p.L1464P	APC,large_intestine,appendix,Substitution - Missense,+1	.	.	COAD-AA-A00J	Baylor	Missense_Mutation	SNP	112203635	112203635	APC	5	T	T	C	C	1	0	0	0	0	1	0	0	0	56	56	3	3	749	118	6
APC	324	hgsc.bcm.edu	36	5	112203046	112203046	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-A015-01A-01W-A005-10	TCGA-AG-A015-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.G3802T	p.E1268X	APC,large_intestine,right,Substitution - Nonsense,0	.	.	READ-AG-A015	Baylor	Nonsense_Mutation	SNP	112203046	112203046	APC	5	G	G	T	T	1	0	0	0	0	0	1	0	0	45	45	5	2	749	212	6
APC	324	broad.mit.edu	36	5	112202167	112202167	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.A2923T	p.K975X	.	.	.	COAD-AA-3673	Broad	Nonsense_Mutation	SNP	112202167	112202167	APC	5	A	T	T	T	1	0	0	0	0	0	1	0	0	13	13	5	3	749	47	5
PTEN	5728	broad.mit.edu	36	10	89710724	89710724	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000314	exon8	c.G895T	p.E299X	PTEN,endometrium,NS,Substitution - Nonsense,0 	.	.	COAD-AA-3977	Broad	Nonsense_Mutation	SNP	89710724	89710724	PTEN	10	G	T	T	T	1	0	0	0	0	0	1	0	0	33	33	5	2	12571	105	5
KRAS	3845	broad.mit.edu	36	12	25269914	25269914	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004985	exon4	c.A351C	p.K117N	KRAS,large_intestine,NS,Substitution - Missense,0 	.	.	COAD-AA-3977	Broad	Missense_Mutation	SNP	25269914	25269914	KRAS	12	T	G	G	G	1	0	0	0	0	1	0	0	0	52	52	3	3	8321	105	5
APC	324	broad.mit.edu	36	5	112144422	112144422	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3999-01	TCGA-AG-3999-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127511	exon5	c.G598T	p.E200X	.	.	.	READ-AG-3999	Broad	Nonsense_Mutation	SNP	112144422	112144422	APC	5	G	T	T	T	1	0	0	0	0	0	1	0	0	41	41	5	2	749	199	5
SLC4A3	6508	broad.mit.edu	36	2	220206260	220206260	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005070	exon10	c.A1298G	p.D433G	.	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	220206260	220206260	SLC4A3	2	A	A	G	G	1	0	0	0	0	1	0	0	0	10	10	3	3	14472	205	5
KRAS	3845	hgsc.bcm.edu	36	12	25269914	25269914	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01G-01A-01W-A005-10	TCGA-AA-A01G-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon4	c.A351C	p.K117N	KRAS,large_intestine,NS,Substitution - Missense,0	.	.	COAD-AA-A01G	Baylor	Missense_Mutation	SNP	25269914	25269914	KRAS	12	T	T	G	G	1	0	0	0	0	1	0	0	0	52	52	3	3	8321	132	5
APC	324	hgsc.bcm.edu	36	5	112202761	112202761	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-3583-01A-01W-0831-10	TCGA-AG-3583-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_001127511	exon14	c.C3517T	p.Q1173X	APC,breast,NS,Substitution - Nonsense,0	.	.	READ-AG-3583	Baylor	Nonsense_Mutation	SNP	112202761	112202761	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	17	17	6	2	749	167	5
RUNX1	861	broad.mit.edu	36	21	35174879	35174879	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3672-01A-01W-0900-09	TCGA-AA-3672-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001754	exon5	c.T353C	p.V118A	.	.	.	COAD-AA-3672	Broad	Missense_Mutation	SNP	35174879	35174879	RUNX1	21	A	G	G	G	1	0	0	0	0	1	0	0	0	6	6	3	3	13570	46	4
APC	324	broad.mit.edu	36	5	112203074	112203074	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3693-01A-01W-0900-09	TCGA-AA-3693-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.3830delA	p.E1277fs	APC,large_intestine,right,Substitution - Nonsense,+1 	.	.	COAD-AA-3693	Broad	Frame_Shift_Del	DEL	112203074	112203074	APC	5	A	-	-	-	1	0	1	0	1	0	0	0	0	9	9	5	5	749	56	4
SETD2	29072	broad.mit.edu	36	3	47137769	47137769	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3710-01A-01W-0995-10	TCGA-AA-3710-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014159	exon3	c.G3361A	p.A1121T	.	.	.	COAD-AA-3710	Broad	Missense_Mutation	SNP	47137769	47137769	SETD2	3	C	T	T	T	1	0	0	0	0	1	0	0	0	28	28	2	2	13955	59	4
RB1	5925	broad.mit.edu	36	13	47935868	47935868	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000321	exon21	c.A2107T	p.I703F	.	.	.	COAD-AA-3811	Broad	Missense_Mutation	SNP	47935868	47935868	RB1	13	A	T	T	T	1	0	0	0	0	1	0	0	0	12	12	3	3	12930	61	4
EGFR	1956	broad.mit.edu	36	7	55200531	55200531	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201282	exon15	c.C1787T	p.P596L	EGFR,central_nervous_system,brain,Substitution - Missense,-2 	.	.	COAD-AA-3811	Broad	Missense_Mutation	SNP	55200531	55200531	EGFR	7	C	T	T	T	1	0	0	0	0	1	0	0	0	23	23	1	1	4903	61	4
TP53	7157	broad.mit.edu	36	17	7514748	7514748	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3842-01A-01W-0995-10	TCGA-AA-3842-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000546	exon10	c.1004delG	p.R335fs	.	.	.	COAD-AA-3842	Broad	Frame_Shift_Del	DEL	7514748	7514748	TP53	17	C	-	-	-	1	0	1	0	1	0	0	0	0	19	19	5	5	16182	70	4
ATM	472	broad.mit.edu	36	11	107723246	107723246	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000051	exon59	c.A8615G	p.H2872R	.	.	.	COAD-AA-A01R	Broad	Missense_Mutation	SNP	107723246	107723246	ATM	11	A	G	G	G	1	0	0	0	0	1	0	0	0	8	8	3	3	1091	137	4
TP53	7157	broad.mit.edu	36	17	7514748	7514749	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AG-3890-01	TCGA-AG-3890-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126112	exon10	c.1004_1005insA	p.R335fs	.	.	.	READ-AG-3890	Broad	Frame_Shift_Ins	INS	7514748	7514749	TP53	17	-	T	T	T	1	0	1	1	0	0	0	0	0	19	19	5	5	16182	190	4
APC	324	broad.mit.edu	36	5	112202783	112202783	+	Nonsense_Mutation	SNP	C	G	G	novel		TCGA-AG-4005-01	TCGA-AG-4005-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.C3539G	p.S1180X	.	.	.	READ-AG-4005	Broad	Nonsense_Mutation	SNP	112202783	112202783	APC	5	C	G	G	G	1	0	0	0	0	0	1	0	0	29	29	6	2	749	201	4
SMAD4	4089	hgsc.bcm.edu	36	18	46845899	46845899	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005359	exon9	c.A1064G	p.D355G	SMAD4,large_intestine,colon,Substitution - Missense,0	.	.	COAD-A6-2678	Baylor	Missense_Mutation	SNP	46845899	46845899	SMAD4	18	A	A	G	G	1	0	0	0	0	1	0	0	0	10	10	3	3	14576	6	4
APC	324	hgsc.bcm.edu	36	5	112202900	112202901	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-AG-3594-01A-02W-0831-10	TCGA-AG-3594-10A-01W-0831-10	AG	AG	AG	-	AG	AG	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.3656_3657del	p.1219_1219del	.	.	.	READ-AG-3594	Baylor	Frame_Shift_Del	DEL	112202900	112202901	APC	5	AG	AG	-	-	1	0	1	0	1	0	0	0	0	7	7	5	5	749	172	4
APC	324	broad.mit.edu	36	5	112192515	112192515	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3667-01A-01W-0900-09	TCGA-AA-3667-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon12	c.C1636T	p.R546X	APC,large_intestine,NS,Substitution - Nonsense,0 	.	.	COAD-AA-3667	Broad	Nonsense_Mutation	SNP	112192515	112192515	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	27	27	6	1	749	45	3
SMAD2	4087	broad.mit.edu	36	18	43622209	43622209	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135937	exon10	c.C1301A	p.S434X	.	.	.	COAD-AA-3684	Broad	Nonsense_Mutation	SNP	43622209	43622209	SMAD2	18	G	T	T	T	1	0	0	0	0	0	1	0	0	45	45	5	2	14574	52	3
SMAD2	4087	broad.mit.edu	36	18	43622209	43622209	+	Nonsense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3696-01A-01W-0900-09	TCGA-AA-3696-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135937	exon10	c.C1301G	p.S434X	.	.	.	COAD-AA-3696	Broad	Nonsense_Mutation	SNP	43622209	43622209	SMAD2	18	G	C	C	C	1	0	0	0	0	0	1	0	0	45	45	5	2	14574	58	3
WT1	7490	broad.mit.edu	36	11	32370150	32370150	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198551	exon9	c.A740C	p.K247T	.	.	.	COAD-AA-3715	Broad	Missense_Mutation	SNP	32370150	32370150	WT1	11	T	G	G	G	1	0	0	0	0	1	0	0	0	56	56	3	3	17202	60	3
FBXW7	55294	broad.mit.edu	36	4	153471357	153471357	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018315	exon6	c.C859T	p.R287X	FBXW7,central_nervous_system,brain,Substitution - Nonsense,0 	.	.	COAD-AA-3833	Broad	Nonsense_Mutation	SNP	153471357	153471357	FBXW7	4	G	A	A	A	1	0	0	0	0	0	1	0	0	38	38	5	1	5690	68	3
FBXW7	55294	broad.mit.edu	36	4	153471357	153471357	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018315	exon6	c.C859T	p.R287X	FBXW7,central_nervous_system,brain,Substitution - Nonsense,0 	.	.	COAD-AA-3949	Broad	Nonsense_Mutation	SNP	153471357	153471357	FBXW7	4	G	A	A	A	1	0	0	0	0	0	1	0	0	38	38	5	1	5690	95	3
NF1	4763	broad.mit.edu	36	17	26586873	26586873	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3956-01A-02W-0995-10	TCGA-AA-3956-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000267	exon28	c.G3827A	p.R1276Q	NF1,large_intestine,colon,Substitution - Missense,0 	.	.	COAD-AA-3956	Broad	Missense_Mutation	SNP	26586873	26586873	NF1	17	G	A	A	A	1	0	0	0	0	1	0	0	0	37	37	1	1	10208	98	3
MITD1	129531	broad.mit.edu	36	2	99156835	99156835	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138798	exon2	c.G228T	p.K76N	.	.	.	COAD-AA-3977	Broad	Missense_Mutation	SNP	99156835	99156835	MITD1	2	C	A	A	A	1	0	0	0	0	1	0	0	0	32	32	2	2	9455	105	3
APC	324	broad.mit.edu	36	5	112203032	112203032	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A00N-01A-02W-A00E-09	TCGA-AA-A00N-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.C3788A	p.S1263X	APC,large_intestine,NS,Substitution - Nonsense,0 	.	.	COAD-AA-A00N	Broad	Nonsense_Mutation	SNP	112203032	112203032	APC	5	C	A	A	A	1	0	0	0	0	0	1	0	0	29	29	6	2	749	121	3
SMAD2	4087	broad.mit.edu	36	18	43622209	43622209	+	Nonsense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135937	exon10	c.C1301G	p.S434X	.	.	.	COAD-AA-A024	Broad	Nonsense_Mutation	SNP	43622209	43622209	SMAD2	18	G	C	C	C	1	0	0	0	0	0	1	0	0	45	45	5	2	14574	144	3
APC	324	broad.mit.edu	36	5	112202311	112202311	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.C3067G	p.Q1023E	APC,soft_tissue,fibrous_tissue_and_uncertain_origin,Substitution - Nonsense,0	.	.	READ-AG-3898	Broad	Missense_Mutation	SNP	112202311	112202311	APC	5	C	G	G	G	1	0	0	0	0	1	0	0	0	25	25	2	2	749	195	3
TP53	7157	broad.mit.edu	36	17	7520046	7520047	+	Frame_Shift_Del	DEL	CA	-	-	novel		TCGA-AG-4001-01	TCGA-AG-4001-01			CA	-	CA	CA	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001126114	exon4	c.365_366del	p.122_122del	.	.	.	READ-AG-4001	Broad	Frame_Shift_Del	DEL	7520046	7520047	TP53	17	CA	-	-	-	1	0	1	0	1	0	0	0	0	29	29	5	5	16182	200	3
MSH2	4436	broad.mit.edu	36	2	47510443	47510443	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000251	exon7	c.G1135T	p.D379Y	.	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	47510443	47510443	MSH2	2	G	G	T	T	1	0	0	0	0	1	0	0	0	33	33	2	2	9728	205	3
PTCH1	5727	broad.mit.edu	36	9	97278154	97278154	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001083605	exon12	c.C1258T	p.R420W	.	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	97278154	97278154	PTCH1	9	G	G	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	12563	205	3
APC	324	hgsc.bcm.edu	36	5	112192485	112192485	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2674-01A-02W-0831-10	TCGA-A6-2674-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon12	c.C1606T	p.R536X	APC,ovary,NS,Substitution - Nonsense,0	.	.	COAD-A6-2674	Baylor	Nonsense_Mutation	SNP	112192485	112192485	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	27	27	5	1	749	3	3
MEN1	4221	hgsc.bcm.edu	36	11	64331723	64331723	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01A-01W-0833-10	TCGA-A6-2676-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_130802	exon4	c.G675A	p.W225X	.	.	.	COAD-A6-2676	Baylor	Nonsense_Mutation	SNP	64331723	64331723	MEN1	11	C	C	T	T	1	0	0	0	0	0	1	0	0	26	26	5	2	9337	4	3
NF2	4771	hgsc.bcm.edu	36	22	28397827	28397827	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000268	exon11	c.C1012T	p.R338C	.	.	.	COAD-AA-3516	Baylor	Missense_Mutation	SNP	28397827	28397827	NF2	22	C	C	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	10209	12	3
FBXW7	55294	hgsc.bcm.edu	36	4	153463542	153463542	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3524-01A-02W-0831-10	TCGA-AA-3524-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018315	exon11	c.C1825T	p.R609W	FBXW7,large_intestine,colon,Substitution - Missense,0	.	.	COAD-AA-3524	Baylor	Missense_Mutation	SNP	153463542	153463542	FBXW7	4	G	G	A	A	1	0	0	0	0	1	0	0	0	37	37	1	1	5690	19	3
FAM123B	139285	hgsc.bcm.edu	36	X	63328820	63328820	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01A-01W-0831-10	TCGA-AA-3527-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152424	exon2	c.C1072T	p.R358X	.	.	.	COAD-AA-3527	Baylor	Nonsense_Mutation	SNP	63328820	63328820	FAM123B	23	G	G	A	A	1	0	0	0	0	0	1	0	0	38	38	5	1	5357	22	3
FAM123B	139285	hgsc.bcm.edu	36	X	63328820	63328820	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152424	exon2	c.C1072T	p.R358X	.	.	.	COAD-AA-3548	Baylor	Nonsense_Mutation	SNP	63328820	63328820	FAM123B	23	G	G	A	A	1	0	0	0	0	0	1	0	0	38	38	5	1	5357	32	3
APC	324	hgsc.bcm.edu	36	5	112192485	112192485	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3558-01A-01W-0831-10	TCGA-AA-3558-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_000038	exon14	c.C1660T	p.R554X	APC,ovary,NS,Substitution - Nonsense,0	.	.	COAD-AA-3558	Baylor	Nonsense_Mutation	SNP	112192485	112192485	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	27	27	6	1	749	39	3
APC	324	hgsc.bcm.edu	36	5	112192515	112192515	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon12	c.C1636T	p.R546X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.	COAD-AA-A00D	Baylor	Nonsense_Mutation	SNP	112192515	112192515	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	27	27	6	1	749	115	3
APC	324	hgsc.bcm.edu	36	5	112192485	112192485	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01A-02W-A005-10	TCGA-AA-A00J-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon12	c.C1606T	p.R536X	APC,ovary,NS,Substitution - Nonsense,0	.	.	COAD-AA-A00J	Baylor	Nonsense_Mutation	SNP	112192485	112192485	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	27	27	5	1	749	118	3
FBXW7	55294	hgsc.bcm.edu	36	4	153464900	153464900	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01A-01W-A005-10	TCGA-AA-A01Q-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018315	exon10	c.C1501T	p.Q501X	.	.	.	COAD-AA-A01Q	Baylor	Nonsense_Mutation	SNP	153464900	153464900	FBXW7	4	G	G	A	A	1	0	0	0	0	0	1	0	0	47	47	5	2	5690	136	3
APC	324	hgsc.bcm.edu	36	5	112192515	112192515	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01A-01W-A005-10	TCGA-AA-A01Q-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon12	c.C1636T	p.R546X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.	COAD-AA-A01Q	Baylor	Nonsense_Mutation	SNP	112192515	112192515	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	27	27	5	1	749	136	3
APC	324	hgsc.bcm.edu	36	5	112192515	112192515	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3581-01A-01W-0831-10	TCGA-AG-3581-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon12	c.C1636T	p.R546X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.	READ-AG-3581	Baylor	Nonsense_Mutation	SNP	112192515	112192515	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	27	27	5	1	749	165	3
SERPINA6	866	broad.mit.edu	36	14	93845865	93845865	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3672-01A-01W-0900-09	TCGA-AA-3672-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001756	exon3	c.G845A	p.R282Q	SERPINA6,skin,NS,Substitution - Missense,0 	.	.	COAD-AA-3672	Broad	Missense_Mutation	SNP	93845865	93845865	SERPINA6	14	C	T	T	T	1	0	0	0	0	1	0	0	0	23	23	1	1	13917	46	2
APC	324	broad.mit.edu	36	5	112202678	112202678	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.3434delG	p.S1145fs	.	.	.	COAD-AA-3680	Broad	Frame_Shift_Del	DEL	112202678	112202678	APC	5	G	-	-	-	1	0	1	0	1	0	0	0	0	34	34	6	5	749	50	2
APC	324	broad.mit.edu	36	5	112202011	112202011	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.G2767T	p.E923X	APC,stomach,NS,Substitution - Nonsense,+2 	.	.	COAD-AA-3688	Broad	Nonsense_Mutation	SNP	112202011	112202011	APC	5	G	T	T	T	1	0	0	0	0	0	1	0	0	41	41	5	2	749	54	2
APC	324	broad.mit.edu	36	5	112202951	112202951	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3710-01A-01W-0995-10	TCGA-AA-3710-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.T3707A	p.I1236N	APC,large_intestine,rectum,Substitution - Missense,+1 	.	.	COAD-AA-3710	Broad	Missense_Mutation	SNP	112202951	112202951	APC	5	T	A	A	A	1	0	0	0	0	1	0	0	0	52	52	3	3	749	59	2
TRIM56	81844	broad.mit.edu	36	7	100519409	100519409	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030961	exon3	c.T2096C	p.V699A	.	.	.	COAD-AA-3715	Broad	Missense_Mutation	SNP	100519409	100519409	TRIM56	7	T	C	C	C	1	0	0	0	0	1	0	0	0	58	58	3	3	16331	60	2
EGFR	1956	broad.mit.edu	36	7	55187768	55187768	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3811-01A-01W-0995-10	TCGA-AA-3811-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201282	exon6	c.C664T	p.R222C	EGFR,central_nervous_system,brain,Substitution - Missense,0 	.	.	COAD-AA-3811	Broad	Missense_Mutation	SNP	55187768	55187768	EGFR	7	C	T	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	4903	61	2
APC	324	broad.mit.edu	36	5	112144424	112144425	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3837-01A-01W-0900-09	TCGA-AA-3837-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000038	exon6	c.570_571insT	p.E190fs	.	.	.	COAD-AA-3837	Broad	Frame_Shift_Ins	INS	112144424	112144425	APC	5	-	T	T	T	1	0	1	1	0	0	0	0	0	4	4	6	5	749	69	2
SMAD4	4089	broad.mit.edu	36	18	46858774	46858774	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005359	exon12	c.T1598G	p.L533R	SMAD4,large_intestine,NS,Substitution - Missense,+1 	.	.	COAD-AA-3845	Broad	Missense_Mutation	SNP	46858774	46858774	SMAD4	18	T	G	G	G	1	0	0	0	0	1	0	0	0	54	54	3	3	14576	72	2
TP53	7157	broad.mit.edu	36	17	7520441	7520441	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon3	c.80delC	p.P27fs	.	.	.	COAD-AA-3867	Broad	Frame_Shift_Del	DEL	7520441	7520441	TP53	17	G	-	-	-	1	0	1	0	1	0	0	0	0	35	35	5	5	16182	85	2
FAM123B	139285	broad.mit.edu	36	X	63328835	63328835	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3939-01A-01W-0995-10	TCGA-AA-3939-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152424	exon2	c.C1057T	p.R353X	.	.	.	COAD-AA-3939	Broad	Nonsense_Mutation	SNP	63328835	63328835	FAM123B	23	G	A	A	A	1	0	0	0	0	0	1	0	0	39	39	5	1	5357	92	2
ADAMTSL3	57188	broad.mit.edu	36	15	82430312	82430312	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207517	exon20	c.C2563T	p.R855C	ADAMTSL3,large_intestine,colon,Substitution - Missense,0 	.	.	COAD-AA-3947	Broad	Missense_Mutation	SNP	82430312	82430312	ADAMTSL3	15	C	T	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	275	94	2
EGFR	1956	broad.mit.edu	36	7	55226928	55226928	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005228	exon21	c.G2492A	p.R831H	EGFR,NS,NS,Substitution - Missense,-2 	.	.	COAD-AA-3966	Broad	Missense_Mutation	SNP	55226928	55226928	EGFR	7	G	A	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	4903	99	2
KRAS	3845	broad.mit.edu	36	12	25271521	25271521	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004985	exon3	c.G204T	p.R68S	.	.	.	COAD-AA-3975	Broad	Missense_Mutation	SNP	25271521	25271521	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	22	22	2	2	8321	103	2
APC	324	broad.mit.edu	36	5	112190790	112190790	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3975-01A-01W-0995-10	TCGA-AA-3975-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon10	c.C1441T	p.R481X	APC,large_intestine,colon,Substitution - Nonsense,0 	.	.	COAD-AA-3975	Broad	Nonsense_Mutation	SNP	112190790	112190790	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	19	19	6	1	749	103	2
APC	324	broad.mit.edu	36	5	112156090	112156090	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3980-01A-02W-0995-10	TCGA-AA-3980-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127510	exon8	c.C694T	p.R232X	APC,large_intestine,NS,Substitution - Nonsense,0 	.	.	COAD-AA-3980	Broad	Nonsense_Mutation	SNP	112156090	112156090	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	19	19	5	1	749	107	2
UVRAG	7405	broad.mit.edu	36	11	75240613	75240613	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003369	exon2	c.A155G	p.N52S	.	.	.	COAD-AA-3984	Broad	Missense_Mutation	SNP	75240613	75240613	UVRAG	11	A	G	G	G	1	0	0	0	0	1	0	0	0	2	2	3	3	16906	109	2
FBXW7	55294	broad.mit.edu	36	4	153466694	153466694	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018315	exon9	c.G1318T	p.D440Y	FBXW7,large_intestine,colon,Substitution - Missense,0 	.	.	COAD-AA-3984	Broad	Missense_Mutation	SNP	153466694	153466694	FBXW7	4	C	A	A	A	1	0	0	0	0	1	0	0	0	29	29	2	2	5690	109	2
MGC42105	167359	broad.mit.edu	36	5	43316392	43316392	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153361	exon4	c.G1115A	p.R372Q	MGC42105,large_intestine,NS,Substitution - Nonsense,+1 	.	.	COAD-AA-3984	Broad	Missense_Mutation	SNP	43316392	43316392	MGC42105	5	G	A	A	A	1	0	0	0	0	1	0	0	0	37	37	1	1	9415	109	2
ERBB2	2064	broad.mit.edu	36	17	35134858	35134858	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005862	exon24	c.G2434A	p.V812I	ERBB2,stomach,NS,Substitution - Missense,0 	.	.	COAD-AA-3994	Broad	Missense_Mutation	SNP	35134858	35134858	ERBB2	17	G	A	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	5142	112	2
MSH2	4436	broad.mit.edu	36	2	47551684	47551684	+	Nonsense_Mutation	SNP	G	T	T	rs63751411	unknown	TCGA-AA-A00N-01A-02W-A00E-09	TCGA-AA-A00N-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000251	exon11	c.G1738T	p.E580X	.	.	.	COAD-AA-A00N	Broad	Nonsense_Mutation	SNP	47551684	47551684	MSH2	2	G	T	T	T	1	0	0	0	0	0	1	0	0	33	33	5	2	9728	121	2
CTNNB1	1499	broad.mit.edu	36	3	41241082	41241082	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A00N-01A-02W-A00E-09	TCGA-AA-A00N-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098210	exon3	c.G75A	p.W25X	CTNNB1,stomach,NS,Substitution - Missense,+1 	.	.	COAD-AA-A00N	Broad	Nonsense_Mutation	SNP	41241082	41241082	CTNNB1	3	G	A	A	A	1	0	0	0	0	0	1	0	0	42	42	5	2	3962	121	2
NLGN1	22871	broad.mit.edu	36	3	174805465	174805465	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014932	exon3	c.A383C	p.E128A	.	.	.	COAD-AA-A010	Broad	Missense_Mutation	SNP	174805465	174805465	NLGN1	3	A	C	C	C	1	0	0	0	0	1	0	0	0	9	9	3	3	10313	128	2
TGFBR2	7048	broad.mit.edu	36	3	30704972	30704972	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024847	exon7	c.C1564T	p.R522X	TGFBR2,large_intestine,NS,Substitution - Nonsense,0 	.	.	COAD-AA-A010	Broad	Nonsense_Mutation	SNP	30704972	30704972	TGFBR2	3	C	T	T	T	1	0	0	0	0	0	1	0	0	27	27	5	1	15624	128	2
HDAC2	3066	broad.mit.edu	36	6	114371361	114371361	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001527	exon12	c.C1225T	p.R409X	HDAC2,skin,NS,Substitution - Nonsense,0 	.	.	COAD-AA-A010	Broad	Nonsense_Mutation	SNP	114371361	114371361	HDAC2	6	G	A	A	A	1	0	0	0	0	0	1	0	0	37	37	5	1	6906	128	2
MAK	4117	broad.mit.edu	36	6	10910128	10910128	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005906	exon7	c.C814T	p.R272X	MAK,breast,NS,Substitution - Missense,+1 	.	.	COAD-AA-A01R	Broad	Nonsense_Mutation	SNP	10910128	10910128	MAK	6	G	A	A	A	1	0	0	0	0	0	1	0	0	40	40	5	1	9062	137	2
FBXW7	55294	broad.mit.edu	36	4	153466694	153466694	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01Z-01A-11W-A096-10	TCGA-AA-A01Z-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018315	exon9	c.G1318A	p.D440N	FBXW7,large_intestine,colon,Substitution - Missense,0 	.	.	COAD-AA-A01Z	Broad	Missense_Mutation	SNP	153466694	153466694	FBXW7	4	C	T	T	T	1	0	0	0	0	1	0	0	0	29	29	2	2	5690	142	2
APC	324	broad.mit.edu	36	5	112190728	112190729	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000038	exon12	c.1433_1434insA	p.L478fs	.	.	.	COAD-AA-A02F	Broad	Frame_Shift_Ins	INS	112190728	112190729	APC	5	-	A	A	A	1	0	1	1	0	0	0	0	0	61	61	6	5	749	146	2
PIK3R1	5295	broad.mit.edu	36	5	67625342	67625347	+	In_Frame_Del	DEL	ATGAAT	-	-	novel		TCGA-AG-3726-01	TCGA-AG-3726-01			ATGAAT	-	ATGAAT	ATGAAT	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_181523	exon10	c.1349_1354del	p.450_452del	.	.	.	READ-AG-3726	Broad	In_Frame_Del	DEL	67625342	67625347	PIK3R1	5	ATGAAT	-	-	-	1	0	1	0	1	0	0	0	0	8	8	5	5	11763	183	2
APC	324	broad.mit.edu	36	5	112198590	112198590	+	Nonsense_Mutation	SNP	C	G	G	novel		TCGA-AG-3878-01	TCGA-AG-3878-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127511	exon13	c.C1733G	p.S578X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.	READ-AG-3878	Broad	Nonsense_Mutation	SNP	112198590	112198590	APC	5	C	G	G	G	1	0	0	0	0	0	1	0	0	29	29	5	2	749	185	2
MEN1	4221	broad.mit.edu	36	11	64328668	64328669	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AG-3882-01	TCGA-AG-3882-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130800	exon10	c.1562_1563insC	p.R521fs	.	.	.	READ-AG-3882	Broad	Frame_Shift_Ins	INS	64328668	64328669	MEN1	11	-	G	G	G	1	0	1	1	0	0	0	0	0	23	23	5	5	9337	187	2
APC	324	broad.mit.edu	36	5	112202968	112202968	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3887-01	TCGA-AG-3887-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127511	exon14	c.C3724T	p.Q1242X	.	.	.	READ-AG-3887	Broad	Nonsense_Mutation	SNP	112202968	112202968	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	17	17	6	2	749	189	2
FGFR2	2263	broad.mit.edu	36	10	123300810	123300810	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144916	exon2	c.G263A	p.R88H	FGFR2,breast,NS,Substitution - Missense,-1	.	.	READ-AG-3892	Broad	Missense_Mutation	SNP	123300810	123300810	FGFR2	10	C	T	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	5787	191	2
CNGA2	1260	broad.mit.edu	36	X	150658775	150658775	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3894-01	TCGA-AG-3894-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005140	exon4	c.C289T	p.R97C	.	.	.	READ-AG-3894	Broad	Missense_Mutation	SNP	150658775	150658775	CNGA2	23	C	T	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	3550	193	2
ERBB2	2064	broad.mit.edu	36	17	35134858	35134858	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001005862	exon24	c.G2434A	p.V812I	ERBB2,stomach,NS,Substitution - Missense,0	.	.	READ-AG-3898	Broad	Missense_Mutation	SNP	35134858	35134858	ERBB2	17	G	A	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	5142	195	2
SMAD4	4089	broad.mit.edu	36	18	46845902	46845902	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3901-01	TCGA-AG-3901-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005359	exon9	c.C1067T	p.P356L	SMAD4,large_intestine,NS,Substitution - Missense,+2	.	.	READ-AG-3901	Broad	Missense_Mutation	SNP	46845902	46845902	SMAD4	18	C	T	T	T	1	0	0	0	0	1	0	0	0	24	24	2	2	14576	196	2
ERBB2	2064	broad.mit.edu	36	17	35134858	35134858	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001005862	exon24	c.G2434A	p.V812I	ERBB2,stomach,NS,Substitution - Missense,0	.	.	READ-AG-3902	Broad	Missense_Mutation	SNP	35134858	35134858	ERBB2	17	G	A	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	5142	197	2
AKAP6	9472	broad.mit.edu	36	14	32361874	32361874	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004274	exon13	c.G5104T	p.E1702X	AKAP6,breast,NS,Substitution - Missense,0	.	.	READ-AG-A002	Baylor+Broad	Nonsense_Mutation	SNP	32361874	32361874	AKAP6	14	G	G	T	T	1	0	0	0	0	0	1	0	0	33	33	5	2	451	205	2
ATM	472	broad.mit.edu	36	11	107665026	107665026	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_000051	exon28	c.C4222A	p.L1408I	.	.	.	READ-AG-A002	Broad	Missense_Mutation	SNP	107665026	107665026	ATM	11	C	A	A	A	1	0	0	0	0	1	0	0	0	32	32	2	2	1091	205	2
ROCK1	6093	broad.mit.edu	36	18	16825264	16825264	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_005406	exon18	c.G2014T	p.D672Y	.	.	.	READ-AG-A002	Broad	Missense_Mutation	SNP	16825264	16825264	ROCK1	18	C	A	A	A	1	0	0	0	0	1	0	0	0	32	32	2	2	13342	205	2
APC	324	broad.mit.edu	36	5	112201511	112201511	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001127511	exon14	c.A2267G	p.D756G	.	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	112201511	112201511	APC	5	A	A	G	G	1	0	0	0	0	1	0	0	0	10	10	3	3	749	205	2
DAPK3	1613	broad.mit.edu	36	19	3912142	3912142	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001348	exon6	c.C647T	p.P216L	DAPK3,lung,NS,Substitution - Missense,-1	.	.	READ-AG-A02N	Broad	Missense_Mutation	SNP	3912142	3912142	DAPK3	19	G	A	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	4182	221	2
APC	324	broad.mit.edu	36	5	112156090	112156090	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127510	exon8	c.C694T	p.R232X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.	READ-AG-A02N	Broad	Nonsense_Mutation	SNP	112156090	112156090	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	19	19	6	1	749	221	2
APC	324	hgsc.bcm.edu	36	5	112190733	112190733	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2677-01A-01W-0831-10	TCGA-A6-2677-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon10	c.C1384T	p.Q462X	.	.	.	COAD-A6-2677	Baylor	Nonsense_Mutation	SNP	112190733	112190733	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	25	25	5	2	749	5	2
EGFR	1956	hgsc.bcm.edu	36	7	55226960	55226960	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005228	exon21	c.A2524C	p.N842H	EGFR,stomach,NS,Substitution - Missense,0	.	.	COAD-AA-3518	Baylor	Missense_Mutation	SNP	55226960	55226960	EGFR	7	A	A	C	C	1	0	0	0	0	1	0	0	0	9	9	3	3	4903	14	2
APC	324	hgsc.bcm.edu	36	5	112203420	112203420	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.C4176A	p.C1392X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.	COAD-AA-3522	Baylor	Nonsense_Mutation	SNP	112203420	112203420	APC	5	C	C	A	A	1	0	0	0	0	0	1	0	0	25	25	5	2	749	18	2
APC	324	hgsc.bcm.edu	36	5	112156090	112156090	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127510	exon8	c.C694T	p.R232X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.	COAD-AA-3531	Baylor	Nonsense_Mutation	SNP	112156090	112156090	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	19	19	6	1	749	25	2
WT1	7490	hgsc.bcm.edu	36	11	32378095	32378095	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3544-01A-01W-0831-10	TCGA-AA-3544-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001198551	exon6	c.C437T	p.T146M	.	.	.	COAD-AA-3544	Baylor	Missense_Mutation	SNP	32378095	32378095	WT1	11	G	G	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	17202	31	2
PIK3R1	5295	hgsc.bcm.edu	36	5	67626853	67626853	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3552-01A-01W-0831-10	TCGA-AA-3552-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_181523	exon12	c.A1690G	p.N564D	PIK3R1,central_nervous_system,brain,Substitution - Missense,-2	.	.	COAD-AA-3552	Baylor	Missense_Mutation	SNP	67626853	67626853	PIK3R1	5	A	A	G	G	1	0	0	0	0	1	0	0	0	9	9	3	3	11763	34	2
MADD	8567	hgsc.bcm.edu	36	11	47307194	47307194	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003682	exon36	c.G4861A	p.V1621I	.	.	.	COAD-AA-3554	Baylor	Missense_Mutation	SNP	47307194	47307194	MADD	11	G	G	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	9018	36	2
CHUK	1147	hgsc.bcm.edu	36	10	101970411	101970411	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001278	exon5	c.G398A	p.R133Q	CHUK,large_intestine,NS,Substitution - Nonsense,-1	.	.	COAD-AA-3555	Baylor	Missense_Mutation	SNP	101970411	101970411	CHUK	10	C	C	T	T	1	0	0	0	0	1	0	0	0	31	31	1	1	3369	37	2
APC	324	hgsc.bcm.edu	36	5	112190790	112190790	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_000038	exon12	c.C1495T	p.R499X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.	COAD-AA-3555	Baylor	Nonsense_Mutation	SNP	112190790	112190790	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	19	19	6	1	749	37	2
APC	324	hgsc.bcm.edu	36	5	112190790	112190790	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3562-01A-02W-0831-10	TCGA-AA-3562-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon10	c.C1441T	p.R481X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.	COAD-AA-3562	Baylor	Nonsense_Mutation	SNP	112190790	112190790	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	19	19	5	1	749	42	2
MASTL	84930	hgsc.bcm.edu	36	10	27499061	27499062	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032844	exon8	c.1167_1168insA	p.A389fs	.	.	.	COAD-AA-A00A	Baylor	Frame_Shift_Ins	INS	27499061	27499062	MASTL	10	-	-	A	A	1	0	1	1	0	0	0	0	0	53	53	5	5	9193	114	2
GATA3	2625	hgsc.bcm.edu	36	10	8155913	8155913	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00Q-01A-01W-A005-10	TCGA-AA-A00Q-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002051	exon6	c.C1253T	p.T418M	.	.	.	COAD-AA-A00Q	Baylor	Missense_Mutation	SNP	8155913	8155913	GATA3	10	C	C	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	6164	123	2
TSHR	7253	hgsc.bcm.edu	36	14	80680071	80680071	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2691-01A-01W-0831-10	TCGA-AF-2691-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000369	exon10	c.C1916A	p.P639Q	TSHR,thyroid,NS,Substitution - Missense,+1	.	.	READ-AF-2691	Baylor	Missense_Mutation	SNP	80680071	80680071	TSHR	14	C	C	A	A	1	0	0	0	0	1	0	0	0	21	21	2	2	16423	157	2
ERBB2	2064	hgsc.bcm.edu	36	17	35134858	35134858	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001005862	exon24	c.G2434A	p.V812I	ERBB2,stomach,NS,Substitution - Missense,0	.	.	READ-AG-3599	Baylor	Missense_Mutation	SNP	35134858	35134858	ERBB2	17	G	G	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	5142	174	2
APC	324	hgsc.bcm.edu	36	5	112202443	112202443	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.A3199T	p.K1067X	.	.	.	READ-AG-A008	Baylor	Nonsense_Mutation	SNP	112202443	112202443	APC	5	A	A	T	T	1	0	0	0	0	0	1	0	0	13	13	5	3	749	206	2
APC	324	broad.mit.edu	36	5	112201603	112201603	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A6-3808-01A-01W-0995-10	TCGA-A6-3808-11A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C2359T	p.R787X	APC,large_intestine,right,Substitution - Nonsense,0 	.	.	COAD-A6-3808	Broad	Nonsense_Mutation	SNP	112201603	112201603	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	31	31	5	1	749	9	1
SMAD4	4089	broad.mit.edu	36	18	46858704	46858704	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3530-01A-01W-0995-10	TCGA-AA-3530-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005359	exon12	c.G1528A	p.G510R	.	.	.	COAD-AA-3530	Broad	Missense_Mutation	SNP	46858704	46858704	SMAD4	18	G	A	A	A	1	0	0	0	0	1	0	0	0	43	43	2	2	14576	24	1
FAM123B	139285	broad.mit.edu	36	X	63328403	63328403	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3666-01A-02W-0900-09	TCGA-AA-3666-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152424	exon2	c.C1489T	p.R497X	.	.	.	COAD-AA-3666	Broad	Nonsense_Mutation	SNP	63328403	63328403	FAM123B	23	G	A	A	A	1	0	0	0	0	0	1	0	0	39	39	5	1	5357	44	1
TCF7L2	6934	broad.mit.edu	36	10	114915324	114915324	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001146284	exon13	c.G1309A	p.A437T	.	.	.	COAD-AA-3673	Broad	Missense_Mutation	SNP	114915324	114915324	TCF7L2	10	G	A	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	15501	47	1
FAM5C	339479	broad.mit.edu	36	1	188517394	188517394	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3673-01A-01W-0900-09	TCGA-AA-3673-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_199051	exon3	c.C346T	p.R116C	FAM5C,kidney,NS,Substitution - Missense,0 	.	.	COAD-AA-3673	Broad	Missense_Mutation	SNP	188517394	188517394	FAM5C	1	G	A	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	5521	47	1
ATM	472	broad.mit.edu	36	11	107705141	107705141	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3678-01A-01W-0900-09	TCGA-AA-3678-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000051	exon49	c.7273delG	p.G2425fs	.	.	.	COAD-AA-3678	Broad	Frame_Shift_Del	DEL	107705141	107705141	ATM	11	G	-	-	-	1	0	1	0	1	0	0	0	0	35	35	5	5	1091	48	1
APC	324	broad.mit.edu	36	5	112156042	112156042	+	Nonsense_Mutation	SNP	C	T	T	rs62619935	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127510	exon8	c.C646T	p.R216X	.	.	.	COAD-AA-3679	Broad	Nonsense_Mutation	SNP	112156042	112156042	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	27	27	6	1	749	49	1
KIAA1632	57724	broad.mit.edu	36	18	41714113	41714113	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020964	exon32	c.C5592G	p.S1864R	.	.	.	COAD-AA-3680	Broad	Missense_Mutation	SNP	41714113	41714113	KIAA1632	18	G	C	C	C	1	0	0	0	0	1	0	0	0	34	34	2	2	8137	50	1
FAM123B	139285	broad.mit.edu	36	X	63328403	63328403	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3680-01A-01W-0900-09	TCGA-AA-3680-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152424	exon2	c.C1489T	p.R497X	.	.	.	COAD-AA-3680	Broad	Nonsense_Mutation	SNP	63328403	63328403	FAM123B	23	G	A	A	A	1	0	0	0	0	0	1	0	0	39	39	5	1	5357	50	1
TBC1D19	55296	broad.mit.edu	36	4	26353300	26353300	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018317	exon18	c.C1300T	p.R434X	TBC1D19,breast,NS,Substitution - Missense,0 	.	.	COAD-AA-3681	Broad	Nonsense_Mutation	SNP	26353300	26353300	TBC1D19	4	C	T	T	T	1	0	0	0	0	0	1	0	0	19	19	5	1	15414	51	1
APC	324	broad.mit.edu	36	5	112202140	112202140	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3684-01A-02W-0900-09	TCGA-AA-3684-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.G2896T	p.E966X	.	.	.	COAD-AA-3684	Broad	Nonsense_Mutation	SNP	112202140	112202140	APC	5	G	T	T	T	1	0	0	0	0	0	1	0	0	45	45	5	2	749	52	1
PRKCE	5581	broad.mit.edu	36	2	46057108	46057108	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3688-01A-01W-0900-09	TCGA-AA-3688-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005400	exon3	c.G449A	p.R150H	.	.	.	COAD-AA-3688	Broad	Missense_Mutation	SNP	46057108	46057108	PRKCE	2	G	A	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	12346	54	1
APC	324	broad.mit.edu	36	5	112201603	112201603	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3692-01A-01W-0900-09	TCGA-AA-3692-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C2359T	p.R787X	APC,large_intestine,right,Substitution - Nonsense,0 	.	.	COAD-AA-3692	Broad	Nonsense_Mutation	SNP	112201603	112201603	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	31	31	6	1	749	55	1
ERBB3	2065	broad.mit.edu	36	12	54765121	54765121	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3695-01A-01W-0900-09	TCGA-AA-3695-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005915	exon3	c.G310A	p.V104M	ERBB3,ovary,NS,Substitution - Missense,0 	.	.	COAD-AA-3695	Broad	Missense_Mutation	SNP	54765121	54765121	ERBB3	12	G	A	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	5144	57	1
SMAD3	4088	broad.mit.edu	36	15	65269827	65269827	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3710-01A-01W-0995-10	TCGA-AA-3710-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145103	exon9	c.C1045A	p.P349T	SMAD3,large_intestine,colon,Substitution - Missense,-1 	.	.	COAD-AA-3710	Broad	Missense_Mutation	SNP	65269827	65269827	SMAD3	15	C	A	A	A	1	0	0	0	0	1	0	0	0	22	22	2	2	14575	59	1
SIAH2	6478	broad.mit.edu	36	3	151942848	151942848	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3710-01A-01W-0995-10	TCGA-AA-3710-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005067	exon2	c.G745A	p.V249I	.	.	.	COAD-AA-3710	Broad	Missense_Mutation	SNP	151942848	151942848	SIAH2	3	C	T	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	14121	59	1
ADAMTS18	170692	broad.mit.edu	36	16	75953574	75953574	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199355	exon7	c.G1145A	p.R382K	ADAMTS18,large_intestine,colon,Substitution - Missense,0 	.	.	COAD-AA-3715	Broad	Missense_Mutation	SNP	75953574	75953574	ADAMTS18	16	C	T	T	T	1	0	0	0	0	1	0	0	0	32	32	2	2	262	60	1
APC	324	broad.mit.edu	36	5	112202510	112202510	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.C3266T	p.A1089V	.	.	.	COAD-AA-3715	Broad	Missense_Mutation	SNP	112202510	112202510	APC	5	C	T	T	T	1	0	0	0	0	1	0	0	0	26	26	2	2	749	60	1
KCNQ5	56479	broad.mit.edu	36	6	73843879	73843879	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160133	exon4	c.C730T	p.R244C	KCNQ5,large_intestine,colon,Substitution - Missense,0 	.	.	COAD-AA-3715	Broad	Missense_Mutation	SNP	73843879	73843879	KCNQ5	6	C	T	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	7976	60	1
PTCH1	5727	broad.mit.edu	36	9	97271062	97271062	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3715-01A-01W-0900-09	TCGA-AA-3715-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083605	exon14	c.C1589T	p.P530L	PTCH1,skin,chest,Substitution - Missense,0 	.	.	COAD-AA-3715	Broad	Missense_Mutation	SNP	97271062	97271062	PTCH1	9	G	A	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	12563	60	1
SCN9A	6335	broad.mit.edu	36	2	166869042	166869042	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002977	exon6	c.C640G	p.R214G	SCN9A,central_nervous_system,brain,Substitution - Nonsense,0 	.	.	COAD-AA-3812	Broad	Missense_Mutation	SNP	166869042	166869042	SCN9A	2	G	C	C	C	1	0	0	0	0	1	0	0	0	37	37	4	4	13750	62	1
LARP4B	23185	broad.mit.edu	36	10	848909	848909	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015155	exon17	c.G2174A	p.R725H	LARP5,central_nervous_system,brain,Substitution - Missense,0 	.	.	COAD-AA-3821	Broad	Missense_Mutation	SNP	848909	848909	LARP4B	10	C	T	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	8509	66	1
CDH1	999	broad.mit.edu	36	16	67403623	67403623	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004360	exon8	c.G1093A	p.V365I	CDH1,stomach,NS,Substitution - Missense,0 	.	.	COAD-AA-3821	Broad	Missense_Mutation	SNP	67403623	67403623	CDH1	16	G	A	A	A	1	0	0	0	0	1	0	0	0	36	36	2	2	3053	66	1
SMAD4	4089	broad.mit.edu	36	18	46858663	46858663	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005359	exon12	c.G1487A	p.R496H	SMAD4,thyroid,NS,Substitution - Missense,0 	.	.	COAD-AA-3821	Broad	Missense_Mutation	SNP	46858663	46858663	SMAD4	18	G	A	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	14576	66	1
PTCH2	8643	broad.mit.edu	36	1	45080168	45080168	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166292	exon2	c.C203A	p.A68D	.	.	.	COAD-AA-3821	Broad	Missense_Mutation	SNP	45080168	45080168	PTCH2	1	G	T	T	T	1	0	0	0	0	1	0	0	0	42	42	2	2	12564	66	1
TPTE	7179	broad.mit.edu	36	21	9973153	9973153	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199259	exon9	c.C376T	p.R126X	TPTE,breast,NS,Substitution - Missense,+1 	.	.	COAD-AA-3821	Broad	Nonsense_Mutation	SNP	9973153	9973153	TPTE	21	G	A	A	A	1	0	0	0	0	0	1	0	0	37	37	5	1	16231	66	1
TNK2	10188	broad.mit.edu	36	3	197099757	197099757	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3821-01A-01W-0995-10	TCGA-AA-3821-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005781	exon2	c.C100T	p.R34C	TNK2,lung,NS,Substitution - Missense,+1 	.	.	COAD-AA-3821	Broad	Missense_Mutation	SNP	197099757	197099757	TNK2	3	G	A	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	16119	66	1
MYCBPAP	84073	broad.mit.edu	36	17	45950911	45950911	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032133	exon5	c.G608A	p.R203Q	MYCBPAP,urinary_tract,bladder,Substitution - Missense,0 	.	.	COAD-AA-3833	Broad	Missense_Mutation	SNP	45950911	45950911	MYCBPAP	17	G	A	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	9876	68	1
ACVR2A	92	broad.mit.edu	36	2	148400156	148400156	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001616	exon10	c.1303delA	p.K435fs	.	.	.	COAD-AA-3833	Broad	Frame_Shift_Del	DEL	148400156	148400156	ACVR2A	2	A	-	-	-	1	0	1	0	1	0	0	0	0	13	13	5	5	222	68	1
PIK3CG	5294	broad.mit.edu	36	7	106296575	106296575	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002649	exon2	c.G1333A	p.A445T	PIK3CG,central_nervous_system,brain,Substitution - Missense,-1 	.	.	COAD-AA-3833	Broad	Missense_Mutation	SNP	106296575	106296575	PIK3CG	7	G	A	A	A	1	0	0	0	0	1	0	0	0	42	42	2	2	11761	68	1
MYO3B	140469	broad.mit.edu	36	2	170948493	170948493	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3845-01A-01W-0995-10	TCGA-AA-3845-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171642	exon12	c.C1213T	p.R405C	.	.	.	COAD-AA-3845	Broad	Missense_Mutation	SNP	170948493	170948493	MYO3B	2	C	T	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	9934	72	1
PDGFD	80310	broad.mit.edu	36	11	103319560	103319560	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033135	exon5	c.C584T	p.T195M	.	.	.	COAD-AA-3848	Broad	Missense_Mutation	SNP	103319560	103319560	PDGFD	11	G	A	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	11507	74	1
PIK3CA	5290	broad.mit.edu	36	3	180404261	180404261	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006218	exon5	c.A1049G	p.D350G	PIK3CA,central_nervous_system,brain,Substitution - Missense,+1 	.	.	COAD-AA-3848	Broad	Missense_Mutation	SNP	180404261	180404261	PIK3CA	3	A	G	G	G	1	0	0	0	0	1	0	0	0	10	10	3	3	11758	74	1
APC	324	broad.mit.edu	36	5	112156042	112156042	+	Nonsense_Mutation	SNP	C	T	T	rs62619935	unknown	TCGA-AA-3848-01A-01W-0900-09	TCGA-AA-3848-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127510	exon8	c.C646T	p.R216X	.	.	.	COAD-AA-3848	Broad	Nonsense_Mutation	SNP	112156042	112156042	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	27	27	5	1	749	74	1
MARK4	57787	broad.mit.edu	36	19	50475809	50475809	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3850-01A-01W-0995-10	TCGA-AA-3850-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001199867	exon12	c.G1253A	p.R418H	MARK4,large_intestine,caecum,Substitution - Missense,+1 	.	.	COAD-AA-3850	Broad	Missense_Mutation	SNP	50475809	50475809	MARK4	19	G	A	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	9180	75	1
PIK3CA	5290	broad.mit.edu	36	3	180399548	180399548	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3852-01A-01W-0900-09	TCGA-AA-3852-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006218	exon2	c.G241A	p.E81K	PIK3CA,large_intestine,right,Substitution - Missense,0 	.	.	COAD-AA-3852	Broad	Missense_Mutation	SNP	180399548	180399548	PIK3CA	3	G	A	A	A	1	0	0	0	0	1	0	0	0	33	33	2	2	11758	77	1
ERBB3	2065	broad.mit.edu	36	12	54765119	54765119	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005915	exon3	c.G308A	p.R103H	.	.	.	COAD-AA-3864	Broad	Missense_Mutation	SNP	54765119	54765119	ERBB3	12	G	A	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	5144	83	1
SMAD4	4089	broad.mit.edu	36	18	46845815	46845815	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005359	exon9	c.C980T	p.A327V	.	.	.	COAD-AA-3864	Broad	Missense_Mutation	SNP	46845815	46845815	SMAD4	18	C	T	T	T	1	0	0	0	0	1	0	0	0	28	28	2	2	14576	83	1
MLL4	9757	broad.mit.edu	36	19	40916372	40916372	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014727	exon29	c.C6994T	p.R2332C	MLL4,central_nervous_system,brain,Substitution - Missense,0 	.	.	COAD-AA-3864	Broad	Missense_Mutation	SNP	40916372	40916372	MLL4	19	C	T	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	9483	83	1
ACTL9	284382	broad.mit.edu	36	19	8669060	8669060	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178525	exon1	c.G992A	p.R331H	.	.	.	COAD-AA-3864	Broad	Missense_Mutation	SNP	8669060	8669060	ACTL9	19	C	T	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	203	83	1
YIPF1	54432	broad.mit.edu	36	1	54109639	54109639	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3864-01A-01W-0995-10	TCGA-AA-3864-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018982	exon7	c.C475T	p.R159X	YIPF1,large_intestine,colon,Substitution - Missense,0 	.	.	COAD-AA-3864	Broad	Nonsense_Mutation	SNP	54109639	54109639	YIPF1	1	G	A	A	A	1	0	0	0	0	0	1	0	0	39	39	5	1	17271	83	1
APBB1IP	54518	broad.mit.edu	36	10	26840775	26840775	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3877-01A-01W-0995-10	TCGA-AA-3877-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019043	exon7	c.G625A	p.E209K	APBB1IP,lung,NS,Substitution - Nonsense,0 	.	.	COAD-AA-3877	Broad	Missense_Mutation	SNP	26840775	26840775	APBB1IP	10	G	A	A	A	1	0	0	0	0	1	0	0	0	37	37	1	1	746	90	1
PDCD6	10016	broad.mit.edu	36	5	359875	359875	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3939-01A-01W-0995-10	TCGA-AA-3939-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013232	exon4	c.G367A	p.G123S	PDCD6,breast,NS,Substitution - Missense,0 	.	.	COAD-AA-3939	Broad	Missense_Mutation	SNP	359875	359875	PDCD6	5	G	A	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	11471	92	1
BAI2	576	broad.mit.edu	36	1	31969094	31969094	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001703	exon29	c.C4274T	p.P1425L	BAI2,central_nervous_system,brain,Substitution - Missense,0 	.	.	COAD-AA-3941	Broad	Missense_Mutation	SNP	31969094	31969094	BAI2	1	G	A	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	1277	93	1
IGSF21	84966	broad.mit.edu	36	1	18577403	18577403	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032880	exon10	c.C1400T	p.T467M	IGSF21,large_intestine,colon,Substitution - Missense,0 	.	.	COAD-AA-3947	Broad	Missense_Mutation	SNP	18577403	18577403	IGSF21	1	C	T	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	7493	94	1
CDC73	79577	broad.mit.edu	36	1	191360959	191360959	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024529	exon2	c.C226T	p.R76X	CDC73,parathyroid,NS,Substitution - Nonsense,0 	.	.	COAD-AA-3949	Broad	Nonsense_Mutation	SNP	191360959	191360959	CDC73	1	C	T	T	T	1	0	0	0	0	0	1	0	0	23	23	5	1	3043	95	1
SLC9A2	6549	broad.mit.edu	36	2	102640646	102640646	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003048	exon2	c.C481A	p.P161T	.	.	.	COAD-AA-3949	Broad	Missense_Mutation	SNP	102640646	102640646	SLC9A2	2	C	A	A	A	1	0	0	0	0	1	0	0	0	22	22	2	2	14529	95	1
MAP2K4	6416	broad.mit.edu	36	17	11957343	11957343	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003010	exon7	c.G754A	p.G252R	.	.	.	COAD-AA-3966	Broad	Missense_Mutation	SNP	11957343	11957343	MAP2K4	17	G	A	A	A	1	0	0	0	0	1	0	0	0	47	47	2	2	9104	99	1
ACVR2A	92	broad.mit.edu	36	2	148400156	148400156	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001616	exon10	c.1303delA	p.K435fs	.	.	.	COAD-AA-3966	Broad	Frame_Shift_Del	DEL	148400156	148400156	ACVR2A	2	A	-	-	-	1	0	1	0	1	0	0	0	0	13	13	5	5	222	99	1
KIAA1632	57724	broad.mit.edu	36	18	41704588	41704588	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3972-01A-01W-0995-10	TCGA-AA-3972-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020964	exon36	c.G6167A	p.R2056Q	KIAA1632,breast,NS,Substitution - Missense,-1 	.	.	COAD-AA-3972	Broad	Missense_Mutation	SNP	41704588	41704588	KIAA1632	18	C	T	T	T	1	0	0	0	0	1	0	0	0	23	23	1	1	8137	101	1
ERBB3	2065	broad.mit.edu	36	12	54765121	54765121	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3976-01A-01W-0995-10	TCGA-AA-3976-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005915	exon3	c.G310A	p.V104M	ERBB3,ovary,NS,Substitution - Missense,0 	.	.	COAD-AA-3976	Broad	Missense_Mutation	SNP	54765121	54765121	ERBB3	12	G	A	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	5144	104	1
TCF7L2	6934	broad.mit.edu	36	10	114915323	114915323	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146285	exon13	c.C1342T	p.R448C	TCF7L2,large_intestine,colon,Substitution - Missense,0 	.	.	COAD-AA-3977	Broad	Missense_Mutation	SNP	114915323	114915323	TCF7L2	10	C	T	T	T	1	0	0	0	0	1	0	0	0	31	31	1	1	15501	105	1
MSI1	4440	broad.mit.edu	36	12	119286911	119286911	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002442	exon5	c.G298A	p.A100T	MSI1,central_nervous_system,brain,Substitution - Missense,0 	.	.	COAD-AA-3977	Broad	Missense_Mutation	SNP	119286911	119286911	MSI1	12	C	T	T	T	1	0	0	0	0	1	0	0	0	28	28	2	2	9733	105	1
ISLR	3671	broad.mit.edu	36	15	72254799	72254799	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201526	exon2	c.G547A	p.D183N	ISLR,large_intestine,colon,Substitution - Missense,0 	.	.	COAD-AA-3977	Broad	Missense_Mutation	SNP	72254799	72254799	ISLR	15	G	A	A	A	1	0	0	0	0	1	0	0	0	37	37	1	1	7749	105	1
PLA2G4A	5321	broad.mit.edu	36	1	185186474	185186474	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024420	exon13	c.G1327A	p.E443K	.	.	.	COAD-AA-3977	Broad	Missense_Mutation	SNP	185186474	185186474	PLA2G4A	1	G	A	A	A	1	0	0	0	0	1	0	0	0	37	37	1	1	11846	105	1
RYR2	6262	broad.mit.edu	36	1	235599511	235599511	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon6	c.C364T	p.R122C	RYR2,central_nervous_system,brain,Substitution - Missense,-1 	.	.	COAD-AA-3977	Broad	Missense_Mutation	SNP	235599511	235599511	RYR2	1	C	T	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	13593	105	1
GRK7	131890	broad.mit.edu	36	3	142982051	142982051	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139209	exon2	c.C758A	p.S253Y	GRK7,skin,NS,Substitution - Missense,0 	.	.	COAD-AA-3977	Broad	Missense_Mutation	SNP	142982051	142982051	GRK7	3	C	A	A	A	1	0	0	0	0	1	0	0	0	32	32	2	2	6700	105	1
KDR	3791	broad.mit.edu	36	4	55655780	55655780	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3977-01A-01W-0995-10	TCGA-AA-3977-10A-01W-0999-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002253	exon21	c.G2917T	p.A973S	.	.	.	COAD-AA-3977	Broad	Missense_Mutation	SNP	55655780	55655780	KDR	4	C	A	A	A	1	0	0	0	0	1	0	0	0	28	28	2	2	8028	105	1
DOCK8	81704	broad.mit.edu	36	9	276581	276581	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3979-01A-01W-0995-10	TCGA-AA-3979-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001190458	exon2	c.G73T	p.V25L	.	.	.	COAD-AA-3979	Broad	Missense_Mutation	SNP	276581	276581	DOCK8	9	G	T	T	T	1	0	0	0	0	1	0	0	0	40	40	4	4	4631	106	1
ADAMTS8	11095	broad.mit.edu	36	11	129783715	129783715	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007037	exon8	c.A1953C	p.E651D	.	.	.	COAD-AA-3984	Broad	Missense_Mutation	SNP	129783715	129783715	ADAMTS8	11	T	G	G	G	1	0	0	0	0	1	0	0	0	64	64	3	3	271	109	1
SULT6B1	391365	broad.mit.edu	36	2	37252193	37252193	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032377	exon6	c.C555A	p.F185L	.	.	.	COAD-AA-3984	Broad	Missense_Mutation	SNP	37252193	37252193	SULT6B1	2	G	T	T	T	1	0	0	0	0	1	0	0	0	33	33	2	2	15192	109	1
CDKL2	8999	broad.mit.edu	36	4	76751487	76751487	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003948	exon4	c.G446A	p.R149Q	CDKL2,ovary,NS,Substitution - Missense,0 	.	.	COAD-AA-3984	Broad	Missense_Mutation	SNP	76751487	76751487	CDKL2	4	C	T	T	T	1	0	0	0	0	1	0	0	0	31	31	1	1	3111	109	1
CMYA5	202333	broad.mit.edu	36	5	79062783	79062783	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153610	exon2	c.G2439T	p.K813N	CMYA5,lung,NS,Substitution - Missense,+1 	.	.	COAD-AA-3984	Broad	Missense_Mutation	SNP	79062783	79062783	CMYA5	5	G	T	T	T	1	0	0	0	0	1	0	0	0	33	33	2	2	3543	109	1
MET	4233	broad.mit.edu	36	7	116204715	116204715	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000245	exon16	c.A3296G	p.D1099G	.	.	.	COAD-AA-3984	Broad	Missense_Mutation	SNP	116204715	116204715	MET	7	A	G	G	G	1	0	0	0	0	1	0	0	0	10	10	3	3	9350	109	1
CSMD3	114788	broad.mit.edu	36	8	113419098	113419098	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon43	c.C6691T	p.R2231X	CSMD3,kidney,NS,Substitution - Missense,+1 	.	.	COAD-AA-3984	Broad	Nonsense_Mutation	SNP	113419098	113419098	CSMD3	8	G	A	A	A	1	0	0	0	0	0	1	0	0	37	37	5	1	3896	109	1
PRKDC	5591	broad.mit.edu	36	8	49009202	49009202	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3984-01A-02W-0995-10	TCGA-AA-3984-10A-01W-0999-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081640	exon15	c.G1499A	p.G500D	PRKDC,skin,NS,Substitution - Missense,-1 	.	.	COAD-AA-3984	Broad	Missense_Mutation	SNP	49009202	49009202	PRKDC	8	C	T	T	T	1	0	0	0	0	1	0	0	0	26	26	2	2	12356	109	1
APC	324	broad.mit.edu	36	5	112156042	112156042	+	Nonsense_Mutation	SNP	C	T	T	rs62619935	unknown	TCGA-AA-3989-01A-01W-0995-10	TCGA-AA-3989-10A-01W-0999-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127510	exon8	c.C646T	p.R216X	.	.	.	COAD-AA-3989	Broad	Nonsense_Mutation	SNP	112156042	112156042	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	27	27	5	1	749	111	1
APC	324	broad.mit.edu	36	5	112201603	112201603	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3994-01A-01W-1073-09	TCGA-AA-3994-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C2359T	p.R787X	APC,large_intestine,right,Substitution - Nonsense,0 	.	.	COAD-AA-3994	Broad	Nonsense_Mutation	SNP	112201603	112201603	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	31	31	6	1	749	112	1
DCLRE1A	9937	broad.mit.edu	36	10	115595522	115595522	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A00N-01A-02W-A00E-09	TCGA-AA-A00N-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014881	exon4	c.C2290A	p.H764N	DCLRE1A,skin,NS,Substitution - Missense,0 	.	.	COAD-AA-A00N	Broad	Missense_Mutation	SNP	115595522	115595522	DCLRE1A	10	G	T	T	T	1	0	0	0	0	1	0	0	0	45	45	2	2	4238	121	1
ATM	472	broad.mit.edu	36	11	107693340	107693340	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A00N-01A-02W-A00E-09	TCGA-AA-A00N-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000051	exon43	c.C6229A	p.L2077I	.	.	.	COAD-AA-A00N	Broad	Missense_Mutation	SNP	107693340	107693340	ATM	11	C	A	A	A	1	0	0	0	0	1	0	0	0	32	32	2	2	1091	121	1
HERC1	8925	broad.mit.edu	36	15	61771792	61771792	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00N-01A-02W-A00E-09	TCGA-AA-A00N-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003922	exon31	c.G5701A	p.E1901K	HERC1,lung,NS,Substitution - Nonsense,0 	.	.	COAD-AA-A00N	Broad	Missense_Mutation	SNP	61771792	61771792	HERC1	15	C	T	T	T	1	0	0	0	0	1	0	0	0	31	31	1	1	6956	121	1
ADAMTS18	170692	broad.mit.edu	36	16	75953574	75953574	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A00N-01A-02W-A00E-09	TCGA-AA-A00N-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199355	exon7	c.G1145T	p.R382I	ADAMTS18,large_intestine,colon,Substitution - Missense,0 	.	.	COAD-AA-A00N	Broad	Missense_Mutation	SNP	75953574	75953574	ADAMTS18	16	C	A	A	A	1	0	0	0	0	1	0	0	0	32	32	2	2	262	121	1
JAG1	182	broad.mit.edu	36	20	10574067	10574067	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00N-01A-02W-A00E-09	TCGA-AA-A00N-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000214	exon16	c.G2050A	p.D684N	JAG1,lung,NS,Substitution - Missense,0 	.	.	COAD-AA-A00N	Broad	Missense_Mutation	SNP	10574067	10574067	JAG1	20	C	T	T	T	1	0	0	0	0	1	0	0	0	31	31	1	1	7825	121	1
MSH6	2956	broad.mit.edu	36	2	47881462	47881462	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A00N-01A-02W-A00E-09	TCGA-AA-A00N-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000179	exon4	c.G2836T	p.E946X	MSH6,endometrium,NS,Substitution - Nonsense,0 	.	.	COAD-AA-A00N	Broad	Nonsense_Mutation	SNP	47881462	47881462	MSH6	2	G	T	T	T	1	0	0	0	0	0	1	0	0	33	33	5	2	9732	121	1
PIK3CA	5290	broad.mit.edu	36	3	180404243	180404243	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A00N-01A-02W-A00E-09	TCGA-AA-A00N-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006218	exon5	c.T1031C	p.V344A	PIK3CA,central_nervous_system,brain,Substitution - Missense,0 	.	.	COAD-AA-A00N	Broad	Missense_Mutation	SNP	180404243	180404243	PIK3CA	3	T	C	C	C	1	0	0	0	0	1	0	0	0	59	59	3	3	11758	121	1
ANAPC4	29945	broad.mit.edu	36	4	24999456	24999456	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A00N-01A-02W-A00E-09	TCGA-AA-A00N-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013367	exon6	c.A463C	p.I155L	ANAPC4,large_intestine,colon,Substitution - Missense,0 	.	.	COAD-AA-A00N	Broad	Missense_Mutation	SNP	24999456	24999456	ANAPC4	4	A	C	C	C	1	0	0	0	0	1	0	0	0	4	4	3	3	596	121	1
TEK	7010	broad.mit.edu	36	9	27147925	27147925	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A00N-01A-02W-A00E-09	TCGA-AA-A00N-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000459	exon2	c.G149A	p.R50H	.	.	.	COAD-AA-A00N	Broad	Missense_Mutation	SNP	27147925	27147925	TEK	9	G	A	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	15553	121	1
NHS	4810	broad.mit.edu	36	X	17660129	17660129	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A00N-01A-02W-A00E-09	TCGA-AA-A00N-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136024	exon9	c.G4049A	p.R1350H	.	.	.	COAD-AA-A00N	Broad	Missense_Mutation	SNP	17660129	17660129	NHS	23	G	A	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	10263	121	1
PCDH11X	27328	broad.mit.edu	36	X	91343048	91343048	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A00N-01A-02W-A00E-09	TCGA-AA-A00N-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032968	exon3	c.C3052T	p.R1018X	.	.	.	COAD-AA-A00N	Broad	Nonsense_Mutation	SNP	91343048	91343048	PCDH11X	23	C	T	T	T	1	0	0	0	0	0	1	0	0	27	27	5	1	11356	121	1
MYO3A	53904	broad.mit.edu	36	10	26425328	26425328	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017433	exon16	c.T1575G	p.N525K	MYO3A,ovary,NS,Substitution - Missense,0 	.	.	COAD-AA-A010	Broad	Missense_Mutation	SNP	26425328	26425328	MYO3A	10	T	G	G	G	1	0	0	0	0	1	0	0	0	52	52	3	3	9933	128	1
ANKRD49	54851	broad.mit.edu	36	11	93870897	93870897	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017704	exon3	c.C271T	p.R91W	ANKRD49,central_nervous_system,brain,Substitution - Missense,0 	.	.	COAD-AA-A010	Broad	Missense_Mutation	SNP	93870897	93870897	ANKRD49	11	C	T	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	663	128	1
RB1	5925	broad.mit.edu	36	13	47814844	47814844	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000321	exon3	c.G373T	p.E125X	.	.	.	COAD-AA-A010	Broad	Nonsense_Mutation	SNP	47814844	47814844	RB1	13	G	T	T	T	1	0	0	0	0	0	1	0	0	33	33	6	2	12930	128	1
ERI2	112479	broad.mit.edu	36	16	20718804	20718804	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080663	exon7	c.G619T	p.E207X	.	.	.	COAD-AA-A010	Broad	Nonsense_Mutation	SNP	20718804	20718804	ERI2	16	C	A	A	A	1	0	0	0	0	0	1	0	0	32	32	5	2	5164	128	1
TIAM1	7074	broad.mit.edu	36	21	31511850	31511850	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003253	exon10	c.C2032T	p.R678C	TIAM1,large_intestine,colon,Substitution - Missense,0 	.	.	COAD-AA-A010	Broad	Missense_Mutation	SNP	31511850	31511850	TIAM1	21	G	A	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	15692	128	1
MSH6	2956	broad.mit.edu	36	2	47881462	47881462	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000179	exon4	c.G2836T	p.E946X	MSH6,endometrium,NS,Substitution - Nonsense,0 	.	.	COAD-AA-A010	Broad	Nonsense_Mutation	SNP	47881462	47881462	MSH6	2	G	T	T	T	1	0	0	0	0	0	1	0	0	33	33	6	2	9732	128	1
KIT	3815	broad.mit.edu	36	4	55256515	55256515	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000222	exon2	c.G148A	p.V50M	.	.	.	COAD-AA-A010	Broad	Missense_Mutation	SNP	55256515	55256515	KIT	4	G	A	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	8215	128	1
PIK3CG	5294	broad.mit.edu	36	7	106296775	106296775	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002649	exon2	c.G1533T	p.E511D	PIK3CG,lung,NS,Substitution - Missense,+2 	.	.	COAD-AA-A010	Broad	Missense_Mutation	SNP	106296775	106296775	PIK3CG	7	G	T	T	T	1	0	0	0	0	1	0	0	0	33	33	2	2	11761	128	1
EIF2AK1	27102	broad.mit.edu	36	7	6043651	6043651	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134335	exon11	c.A1259C	p.K420T	.	.	.	COAD-AA-A010	Broad	Missense_Mutation	SNP	6043651	6043651	EIF2AK1	7	T	G	G	G	1	0	0	0	0	1	0	0	0	64	64	3	3	4932	128	1
TRPS1	7227	broad.mit.edu	36	8	116700610	116700610	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014112	exon3	c.G890A	p.R297H	TRPS1,lung,NS,Substitution - Missense,0 	.	.	COAD-AA-A010	Broad	Missense_Mutation	SNP	116700610	116700610	TRPS1	8	C	T	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	16394	128	1
ADRA1A	148	broad.mit.edu	36	8	26684055	26684055	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033304	exon2	c.T929C	p.I310T	.	.	.	COAD-AA-A010	Broad	Missense_Mutation	SNP	26684055	26684055	ADRA1A	8	A	G	G	G	1	0	0	0	0	1	0	0	0	16	16	3	3	333	128	1
BCOR	54880	broad.mit.edu	36	X	39799667	39799667	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017745	exon12	c.C4537T	p.R1513X	.	.	.	COAD-AA-A010	Broad	Nonsense_Mutation	SNP	39799667	39799667	BCOR	23	G	A	A	A	1	0	0	0	0	0	1	0	0	39	39	5	1	1363	128	1
PTCH1	5727	broad.mit.edu	36	9	97251370	97251370	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A01P-01A-21W-A096-10	TCGA-AA-A01P-11A-11W-A096-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083605	exon22	c.3153delC	p.P1051fs	PTCH1,skin,NS,Substitution - Missense,-1 	.	.	COAD-AA-A01P	Broad	Frame_Shift_Del	DEL	97251370	97251370	PTCH1	9	G	-	-	-	1	0	1	0	1	0	0	0	0	47	47	5	5	12563	135	1
ALK	238	broad.mit.edu	36	2	29460183	29460183	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004304	exon5	c.C1201T	p.R401X	ALK,ovary,NS,Substitution - Nonsense,0 	.	.	COAD-AA-A01R	Broad	Nonsense_Mutation	SNP	29460183	29460183	ALK	2	G	A	A	A	1	0	0	0	0	0	1	0	0	37	37	5	1	520	137	1
TRRAP	8295	broad.mit.edu	36	7	98429186	98429186	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01R-01A-21W-A096-10	TCGA-AA-A01R-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003496	exon64	c.C9808T	p.R3270C	TRRAP,large_intestine,NS,Substitution - Missense,-1 	.	.	COAD-AA-A01R	Broad	Missense_Mutation	SNP	98429186	98429186	TRRAP	7	C	T	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	16402	137	1
TNFRSF11B	4982	broad.mit.edu	36	8	120014420	120014420	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01S-01A-21W-A096-10	TCGA-AA-A01S-11A-21W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002546	exon2	c.C331T	p.R111C	TNFRSF11B,central_nervous_system,brain,Substitution - Missense,0 	.	.	COAD-AA-A01S	Broad	Missense_Mutation	SNP	120014420	120014420	TNFRSF11B	8	G	A	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	16086	138	1
TRPM7	54822	broad.mit.edu	36	15	48690703	48690703	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01V-01A-23W-A096-10	TCGA-AA-A01V-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017672	exon17	c.C2159T	p.T720I	TRPM7,breast,NS,Substitution - Missense,0 	.	.	COAD-AA-A01V	Broad	Missense_Mutation	SNP	48690703	48690703	TRPM7	15	G	A	A	A	1	0	0	0	0	1	0	0	0	44	44	2	2	16392	140	1
NTRK3	4916	broad.mit.edu	36	15	86273527	86273527	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002530	exon16	c.C2032T	p.R678X	NTRK3,breast,NS,Substitution - Missense,+1 	.	.	COAD-AA-A022	Broad	Nonsense_Mutation	SNP	86273527	86273527	NTRK3	15	G	A	A	A	1	0	0	0	0	0	1	0	0	39	39	5	1	10559	143	1
TOP3B	8940	broad.mit.edu	36	22	20647241	20647241	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003935	exon12	c.A1229C	p.E410A	.	.	.	COAD-AA-A022	Broad	Missense_Mutation	SNP	20647241	20647241	TOP3B	22	T	G	G	G	1	0	0	0	0	1	0	0	0	54	54	3	3	16169	143	1
FBXW7	55294	broad.mit.edu	36	4	153463634	153463634	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A022-01A-21W-A096-10	TCGA-AA-A022-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018315	exon11	c.G1733A	p.R578Q	FBXW7,endometrium,NS,Substitution - Nonsense,-1 	.	.	COAD-AA-A022	Broad	Missense_Mutation	SNP	153463634	153463634	FBXW7	4	C	T	T	T	1	0	0	0	0	1	0	0	0	31	31	1	1	5690	143	1
APC	324	broad.mit.edu	36	5	112182841	112182841	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A024-01A-02W-A00E-09	TCGA-AA-A024-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon8	c.C1159T	p.R387X	APC,large_intestine,NS,Substitution - Nonsense,0 	.	.	COAD-AA-A024	Broad	Nonsense_Mutation	SNP	112182841	112182841	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	23	23	5	1	749	144	1
ACTL9	284382	broad.mit.edu	36	19	8669060	8669060	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A029-01A-01W-A00E-09	TCGA-AA-A029-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178525	exon1	c.G992A	p.R331H	.	.	.	COAD-AA-A029	Broad	Missense_Mutation	SNP	8669060	8669060	ACTL9	19	C	T	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	203	145	1
AKAP12	9590	broad.mit.edu	36	6	151711937	151711937	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005100	exon4	c.G718A	p.E240K	AKAP12,large_intestine,colon,Substitution - Missense,0 	.	.	COAD-AA-A02F	Broad	Missense_Mutation	SNP	151711937	151711937	AKAP12	6	G	A	A	A	1	0	0	0	0	1	0	0	0	37	37	1	1	444	146	1
APC	324	broad.mit.edu	36	5	112201603	112201603	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A03F-01A-11W-A096-10	TCGA-AA-A03F-11A-12W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C2359T	p.R787X	APC,large_intestine,right,Substitution - Nonsense,0 	.	.	COAD-AA-A03F	Broad	Nonsense_Mutation	SNP	112201603	112201603	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	31	31	6	1	749	152	1
RB1	5925	broad.mit.edu	36	13	47931947	47931947	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000321	exon20	c.A2083G	p.M695V	.	.	.	READ-AG-3881	Broad	Missense_Mutation	SNP	47931947	47931947	RB1	13	A	G	G	G	1	0	0	0	0	1	0	0	0	8	8	3	3	12930	186	1
TCF7L2	6934	broad.mit.edu	36	10	114915323	114915323	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3882-01	TCGA-AG-3882-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001146285	exon13	c.C1342T	p.R448C	TCF7L2,large_intestine,colon,Substitution - Missense,0	.	.	READ-AG-3882	Broad	Missense_Mutation	SNP	114915323	114915323	TCF7L2	10	C	T	T	T	1	0	0	0	0	1	0	0	0	31	31	1	1	15501	187	1
KCNQ5	56479	broad.mit.edu	36	6	73843880	73843880	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3883-01	TCGA-AG-3883-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001160133	exon4	c.G731A	p.R244H	KCNQ5,large_intestine,colon,Substitution - Missense,+1	.	.	READ-AG-3883	Broad	Missense_Mutation	SNP	73843880	73843880	KCNQ5	6	G	A	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	7976	188	1
NLRP13	126204	broad.mit.edu	36	19	61113845	61113845	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176810	exon6	c.G2178T	p.E726D	NLRP13,lung,NS,Substitution - Missense,-2	.	.	READ-AG-3892	Broad	Missense_Mutation	SNP	61113845	61113845	NLRP13	19	C	A	A	A	1	0	0	0	0	1	0	0	0	32	32	2	2	10327	191	1
MTOR	2475	broad.mit.edu	36	1	11091949	11091949	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004958	exon56	c.C7513T	p.R2505X	FRAP1,kidney,NS,Substitution - Missense,+1	.	.	READ-AG-3892	Broad	Nonsense_Mutation	SNP	11091949	11091949	MTOR	1	G	A	A	A	1	0	0	0	0	0	1	0	0	37	37	5	1	9811	191	1
ATP12A	479	broad.mit.edu	36	13	24178568	24178568	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001185085	exon15	c.G2154T	p.Q718H	ATP12A,central_nervous_system,brain,Substitution - Missense,+2	.	.	READ-AG-3892	Broad	Missense_Mutation	SNP	24178568	24178568	ATP12A	13	G	T	T	T	1	0	0	0	0	1	0	0	0	33	33	2	2	1104	191	1
MEF2C	4208	broad.mit.edu	36	5	88054275	88054275	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193350	exon11	c.G1324A	p.E442K	MEF2C,lung,NS,Substitution - Missense,0	.	.	READ-AG-3892	Broad	Missense_Mutation	SNP	88054275	88054275	MEF2C	5	C	T	T	T	1	0	0	0	0	1	0	0	0	31	31	1	1	9322	191	1
GPR98	84059	broad.mit.edu	36	5	90172178	90172178	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3892-01	TCGA-AG-3892-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032119	exon78	c.C16639T	p.R5547C	MASS1,central_nervous_system,brain,Substitution - Missense,-1	.	.	READ-AG-3892	Broad	Missense_Mutation	SNP	90172178	90172178	GPR98	5	C	T	T	T	1	0	0	0	0	1	0	0	0	31	31	1	1	6627	191	1
APC	324	broad.mit.edu	36	5	112156042	112156042	+	Nonsense_Mutation	SNP	C	T	T	rs62619935	unknown	TCGA-AG-3894-01	TCGA-AG-3894-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127510	exon8	c.C646T	p.R216X	.	.	.	READ-AG-3894	Broad	Nonsense_Mutation	SNP	112156042	112156042	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	27	27	5	1	749	193	1
APC	324	broad.mit.edu	36	5	112201603	112201603	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127511	exon14	c.C2359T	p.R787X	APC,large_intestine,right,Substitution - Nonsense,0	.	.	READ-AG-3898	Broad	Nonsense_Mutation	SNP	112201603	112201603	APC	5	C	T	T	T	1	0	0	0	0	0	1	0	0	31	31	5	1	749	195	1
CRB1	23418	broad.mit.edu	36	1	195663312	195663312	+	Missense_Mutation	SNP	C	T	T	rs28939720	unknown	TCGA-AG-3901-01	TCGA-AG-3901-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201253	exon7	c.C2234T	p.T745M	CRB1,large_intestine,colon,Substitution - Missense,0	.	.	READ-AG-3901	Broad	Missense_Mutation	SNP	195663312	195663312	CRB1	1	C	T	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	3800	196	1
PIK3CA	5290	broad.mit.edu	36	3	180404243	180404243	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3901-01	TCGA-AG-3901-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006218	exon5	c.T1031G	p.V344G	PIK3CA,central_nervous_system,brain,Substitution - Missense,0	.	.	READ-AG-3901	Broad	Missense_Mutation	SNP	180404243	180404243	PIK3CA	3	T	G	G	G	1	0	0	0	0	1	0	0	0	59	59	3	3	11758	196	1
COL7A1	1294	broad.mit.edu	36	3	48596945	48596945	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3909-01	TCGA-AG-3909-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000094	exon35	c.C4096T	p.R1366W	COL7A1,breast,NS,Substitution - Missense,0	.	.	READ-AG-3909	Broad	Missense_Mutation	SNP	48596945	48596945	COL7A1	3	G	A	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	3656	198	1
DGKB	1607	broad.mit.edu	36	7	14580432	14580432	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145695	exon19	c.C1703A	p.P568H	DGKB,lung,NS,Substitution - Missense,-1	.	.	READ-AG-A002	Broad	Missense_Mutation	SNP	14580432	14580432	DGKB	7	G	T	T	T	1	0	0	0	0	1	0	0	0	35	35	2	2	4408	205	1
FSCB	84075	broad.mit.edu	36	14	44043617	44043617	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_032135	exon1	c.C2324T	p.S775L	FSCB,breast,NS,Substitution - Missense,0	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	44043617	44043617	FSCB	14	G	G	A	A	1	0	0	0	0	1	0	0	0	37	37	1	1	5984	205	1
WDR67	93594	broad.mit.edu	36	8	124222183	124222183	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_145647	exon18	c.A2501T	p.N834I	.	.	.	READ-AG-A002	Broad	Missense_Mutation	SNP	124222183	124222183	WDR67	8	A	T	T	T	1	0	0	0	0	1	0	0	0	4	4	3	3	17112	205	1
PLA2G4A	5321	broad.mit.edu	36	1	185186474	185186474	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_024420	exon13	c.G1327A	p.E443K	.	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	185186474	185186474	PLA2G4A	1	G	G	A	A	1	0	0	0	0	1	0	0	0	37	37	1	1	11846	205	1
LAX1	54900	broad.mit.edu	36	1	202010146	202010146	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_017773	exon5	c.G911A	p.G304E	.	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	202010146	202010146	LAX1	1	G	G	A	A	1	0	0	0	0	1	0	0	0	41	41	2	2	8526	205	1
MDM4	4194	broad.mit.edu	36	1	202785060	202785060	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_002393	exon11	c.C1100T	p.S367L	MDM4,upper_aerodigestive_tract,head_neck,Substitution - Missense,0	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	202785060	202785060	MDM4	1	C	C	T	T	1	0	0	0	0	1	0	0	0	31	31	1	1	9279	205	1
USP28	57646	broad.mit.edu	36	11	113175269	113175269	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_020886	exon25	c.C3137A	p.P1046H	USP28,kidney,NS,Substitution - Missense,-1	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	113175269	113175269	USP28	11	G	G	T	T	1	0	0	0	0	1	0	0	0	35	35	2	2	16856	205	1
WT1	7490	broad.mit.edu	36	11	32378146	32378146	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001198551	exon6	c.G386A	p.S129N	WT1,peritoneum,NS,Substitution - Missense,-1	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	32378146	32378146	WT1	11	C	C	T	T	1	0	0	0	0	1	0	0	0	28	28	2	2	17202	205	1
NRXN2	9379	broad.mit.edu	36	11	64175337	64175337	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015080	exon14	c.G2884A	p.G962S	NRXN2,skin,NS,Substitution - Missense,0	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	64175337	64175337	NRXN2	11	C	C	T	T	1	0	0	0	0	1	0	0	0	23	23	1	1	10517	205	1
SPTBN2	6712	broad.mit.edu	36	11	66212792	66212792	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_006946	exon30	c.G6139A	p.E2047K	SPTBN2,skin,NS,Substitution - Missense,0	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	66212792	66212792	SPTBN2	11	C	C	T	T	1	0	0	0	0	1	0	0	0	31	31	1	1	14932	205	1
SMAD2	4087	broad.mit.edu	36	18	43628943	43628943	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001135937	exon7	c.G808A	p.D270N	SMAD2,large_intestine,colon,Substitution - Missense,+1	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	43628943	43628943	SMAD2	18	C	C	T	T	1	0	0	0	0	1	0	0	0	32	32	2	2	14574	205	1
EPHB1	2047	broad.mit.edu	36	3	136403102	136403102	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_004441	exon12	c.C2227T	p.R743W	EPHB1,stomach,NS,Substitution - Missense,-1	.	.	READ-AG-A002	Broad	Missense_Mutation	SNP	136403102	136403102	EPHB1	3	C	T	T	T	1	0	0	0	0	1	0	0	0	31	31	1	1	5110	205	1
ITPR2	3709	broad.mit.edu	36	12	26666577	26666577	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_002223	exon25	c.G3151A	p.D1051N	ITPR2,kidney,NS,Substitution - Missense,+1	.	.	READ-AG-A002	Broad	Missense_Mutation	SNP	26666577	26666577	ITPR2	12	C	T	T	T	1	0	0	0	0	1	0	0	0	31	31	1	1	7812	205	1
NR1H4	9971	broad.mit.edu	36	12	99458719	99458719	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_005123	exon9	c.G1058A	p.R353Q	NR1H4,lung,NS,Substitution - Missense,0	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	99458719	99458719	NR1H4	12	G	G	A	A	1	0	0	0	0	1	0	0	0	37	37	1	1	10470	205	1
FBXW7	55294	broad.mit.edu	36	4	153463635	153463635	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_018315	exon11	c.C1732T	p.R578X	FBXW7,endometrium,NS,Substitution - Nonsense,0	.	.	READ-AG-A002	Baylor+Broad	Nonsense_Mutation	SNP	153463635	153463635	FBXW7	4	G	G	A	A	1	0	0	0	0	0	1	0	0	37	37	5	1	5690	205	1
ABCG2	9429	broad.mit.edu	36	4	89261932	89261932	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004827	exon6	c.G568T	p.E190X	ABCG2,central_nervous_system,brain,Substitution - Missense,0	.	.	READ-AG-A002	Baylor+Broad	Nonsense_Mutation	SNP	89261932	89261932	ABCG2	4	C	C	A	A	1	0	0	0	0	0	1	0	0	32	32	5	2	69	205	1
YSK4	80122	broad.mit.edu	36	2	135455324	135455324	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_025052	exon9	c.A3457C	p.N1153H	YSK4,stomach,NS,Substitution - Missense,+1	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	135455324	135455324	YSK4	2	T	T	G	G	1	0	0	0	0	1	0	0	0	64	64	3	3	17289	205	1
LRP1B	53353	broad.mit.edu	36	2	141324360	141324360	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina	NM_018557	exon29	c.A4720G	p.K1574E	.	.	.	READ-AG-A002	Broad	Missense_Mutation	SNP	141324360	141324360	LRP1B	2	T	C	C	C	1	0	0	0	0	1	0	0	0	64	64	3	3	8823	205	1
PIKFYVE	200576	broad.mit.edu	36	2	208923021	208923021	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_015040	exon36	c.G5403T	p.K1801N	.	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	208923021	208923021	PIKFYVE	2	G	G	T	T	1	0	0	0	0	1	0	0	0	33	33	2	2	11769	205	1
CPS1	1373	broad.mit.edu	36	2	211129717	211129717	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_001875	exon1	c.G15T	p.L5F	.	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	211129717	211129717	CPS1	2	G	G	T	T	1	0	0	0	0	1	0	0	0	45	45	2	2	3775	205	1
ALK	238	broad.mit.edu	36	2	29460183	29460183	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_004304	exon5	c.C1201T	p.R401X	ALK,ovary,NS,Substitution - Nonsense,0	.	.	READ-AG-A002	Baylor+Broad	Nonsense_Mutation	SNP	29460183	29460183	ALK	2	G	G	A	A	1	0	0	0	0	0	1	0	0	37	37	5	1	520	205	1
MSH2	4436	broad.mit.edu	36	2	47510525	47510525	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A002-01	TCGA-AG-A002-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	SOLID			Illumina	NM_000251	exon7	c.G1217A	p.R406Q	MSH2,large_intestine,NS,Substitution - Nonsense,+1	.	.	READ-AG-A002	Baylor+Broad	Missense_Mutation	SNP	47510525	47510525	MSH2	2	G	G	A	A	1	0	0	0	0	1	0	0	0	37	37	1	1	9728	205	1
APC	324	broad.mit.edu	36	5	112201198	112201198	+	Nonsense_Mutation	SNP	A	T	T	novel		TCGA-AG-A011-01	TCGA-AG-A011-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127511	exon14	c.A1954T	p.K652X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.	READ-AG-A011	Baylor+Broad	Nonsense_Mutation	SNP	112201198	112201198	APC	5	A	A	T	T	1	0	0	0	0	0	1	0	0	1	1	6	3	749	210	1
APC	324	broad.mit.edu	36	5	112202815	112202815	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A014-01	TCGA-AG-A014-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.G3571T	p.E1191X	.	.	.	READ-AG-A014	Broad	Nonsense_Mutation	SNP	112202815	112202815	APC	5	G	T	T	T	1	0	0	0	0	0	1	0	0	37	37	5	4	749	211	1
C14orf49	161176	broad.mit.edu	36	14	94991706	94991706	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A01L-01	TCGA-AG-A01L-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_152592	exon5	c.G898A	p.G300R	C14orf49,central_nervous_system,brain,Substitution - Missense,0	.	.	READ-AG-A01L	Baylor+Broad	Missense_Mutation	SNP	94991706	94991706	C14orf49	14	C	C	T	T	1	0	0	0	0	1	0	0	0	23	23	1	1	1749	214	1
NXF5	55998	broad.mit.edu	36	X	100983393	100983393	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A025-01	TCGA-AG-A025-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_032946	exon5	c.G149A	p.R50Q	.	.	.	READ-AG-A025	Broad	Missense_Mutation	SNP	100983393	100983393	NXF5	23	C	T	T	T	1	0	0	0	0	1	0	0	0	31	31	1	1	10635	218	1
APC	324	broad.mit.edu	36	5	112203000	112203000	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-AG-A026-01	TCGA-AG-A026-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.T3756A	p.C1252X	.	.	.	READ-AG-A026	Broad	Nonsense_Mutation	SNP	112203000	112203000	APC	5	T	A	A	A	1	0	0	0	0	0	1	0	0	60	60	5	3	749	219	1
HNF4A	3172	broad.mit.edu	36	20	42468144	42468144	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001030003	exon2	c.G82A	p.A28T	.	.	.	READ-AG-A02N	Broad	Missense_Mutation	SNP	42468144	42468144	HNF4A	20	G	A	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	7150	221	1
MAST1	22983	broad.mit.edu	36	19	12839684	12839684	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014975	exon20	c.G2459A	p.R820H	.	.	.	READ-AG-A02N	Broad	Missense_Mutation	SNP	12839684	12839684	MAST1	19	G	A	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	9189	221	1
LRRK2	120892	broad.mit.edu	36	12	38994152	38994152	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198578	exon32	c.C4648T	p.R1550W	LRRK2,ovary,NS,Substitution - Missense,-1	.	.	READ-AG-A02N	Broad	Missense_Mutation	SNP	38994152	38994152	LRRK2	12	C	T	T	T	1	0	0	0	0	1	0	0	0	23	23	1	1	8899	221	1
ERBB3	2065	broad.mit.edu	36	12	54765121	54765121	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005915	exon3	c.G310A	p.V104M	ERBB3,ovary,NS,Substitution - Missense,0	.	.	READ-AG-A02N	Broad	Missense_Mutation	SNP	54765121	54765121	ERBB3	12	G	A	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	5144	221	1
IFLTD1	160492	broad.mit.edu	36	12	25590735	25590735	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A036-01	TCGA-AG-A036-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145727	exon2	c.C79T	p.P27S	IFLTD1,central_nervous_system,brain,Substitution - Missense,+1	.	.	READ-AG-A036	Broad	Missense_Mutation	SNP	25590735	25590735	IFLTD1	12	G	A	A	A	1	0	0	0	0	1	0	0	0	41	41	2	2	7425	224	1
MLL3	58508	hgsc.bcm.edu	36	7	151490502	151490502	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_170606	exon43	c.C11093T	p.T3698M	MLL3,large_intestine,colon,Substitution - Missense,-1	.	.	COAD-A6-2672	Baylor	Missense_Mutation	SNP	151490502	151490502	MLL3	7	G	G	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	9482	2	1
JAK2	3717	hgsc.bcm.edu	36	9	5067459	5067459	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004972	exon15	c.T1871C	p.L624P	JAK2,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.	COAD-A6-2672	Baylor	Missense_Mutation	SNP	5067459	5067459	JAK2	9	T	T	C	C	1	0	0	0	0	1	0	0	0	55	55	3	3	7829	2	1
KRTAP5-5	439915	hgsc.bcm.edu	36	11	1607696	1607696	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A6-2676-01A-01W-0833-10	TCGA-A6-2676-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001480	exon1	c.G50T	p.R17L	KRTAP5-5,lung,NS,Substitution - Missense,+1	.	.	COAD-A6-2676	Baylor	Missense_Mutation	SNP	1607696	1607696	KRTAP5-5	11	G	T	T	T	1	0	0	0	0	1	0	0	0	40	40	4	4	8442	4	1
CALCR	799	hgsc.bcm.edu	36	7	92946683	92946683	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3514-01A-02W-0831-10	TCGA-AA-3514-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001742	exon4	c.G124A	p.V42I	.	.	.	COAD-AA-3514	Baylor	Missense_Mutation	SNP	92946683	92946683	CALCR	7	C	C	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	2543	11	1
NTM	50863	hgsc.bcm.edu	36	11	131710194	131710194	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001144058	exon8	c.G1012T	p.A338S	HNT,central_nervous_system,brain,Substitution - Missense,0	.	.	COAD-AA-3516	Baylor	Missense_Mutation	SNP	131710194	131710194	NTM	11	G	G	T	T	1	0	0	0	0	1	0	0	0	42	42	2	2	10550	12	1
ENPEP	2028	hgsc.bcm.edu	36	4	111700268	111700268	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001977	exon19	c.A2659G	p.R887G	ENPEP,breast,NS,Substitution - Missense,-1	.	.	COAD-AA-3516	Baylor	Missense_Mutation	SNP	111700268	111700268	ENPEP	4	A	A	G	G	1	0	0	0	0	1	0	0	0	7	7	3	3	5064	12	1
FBXW7	55294	hgsc.bcm.edu	36	4	153552369	153552369	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033632	exon2	c.C37T	p.R13X	FBXW7,kidney,NS,Substitution - Nonsense,0	.	.	COAD-AA-3516	Baylor	Nonsense_Mutation	SNP	153552369	153552369	FBXW7	4	G	G	A	A	1	0	0	0	0	0	1	0	0	40	40	5	1	5690	12	1
TRIML2	205860	hgsc.bcm.edu	36	4	189263079	189263079	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173553	exon2	c.A41C	p.K14T	.	.	.	COAD-AA-3516	Baylor	Missense_Mutation	SNP	189263079	189263079	TRIML2	4	T	T	G	G	1	0	0	0	0	1	0	0	0	56	56	3	3	16352	12	1
CDC27	996	hgsc.bcm.edu	36	17	42571161	42571161	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3518-01A-02W-0833-10	TCGA-AA-3518-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114091	exon13	c.T1665G	p.D555E	CDC27,lung,NS,Substitution - Missense,0	.	.	COAD-AA-3518	Baylor	Missense_Mutation	SNP	42571161	42571161	CDC27	17	A	C	C	C	1	0	0	0	0	1	0	0	0	8	8	3	3	3024	14	1
EPHA5	2044	hgsc.bcm.edu	36	4	65968806	65968806	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004439	exon6	c.C1475G	p.P492R	.	.	.	COAD-AA-3519	Baylor	Missense_Mutation	SNP	65968806	65968806	EPHA5	4	G	G	C	C	1	0	0	0	0	1	0	0	0	47	47	2	2	5106	15	1
APC	324	hgsc.bcm.edu	36	5	112156042	112156042	+	Nonsense_Mutation	SNP	C	C	T	rs62619935	unknown	TCGA-AA-3519-01A-02W-0831-10	TCGA-AA-3519-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127510	exon8	c.C646T	p.R216X	.	.	.	COAD-AA-3519	Baylor	Nonsense_Mutation	SNP	112156042	112156042	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	27	27	6	1	749	15	1
TTN	7273	hgsc.bcm.edu	36	2	179349846	179349846	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3520-01A-01W-0831-10	TCGA-AA-3520-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_133379	exon28	c.C4990T	p.R1664W	TTN,ovary,NS,Substitution - Missense,+1	.	.	COAD-AA-3520	Baylor	Missense_Mutation	SNP	179349846	179349846	TTN	2	G	G	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	16536	16	1
SMAD4	4089	hgsc.bcm.edu	36	18	46845904	46845904	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3522-01A-01W-0831-10	TCGA-AA-3522-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005359	exon9	c.T1069C	p.S357P	.	.	.	COAD-AA-3522	Baylor	Missense_Mutation	SNP	46845904	46845904	SMAD4	18	T	T	C	C	1	0	0	0	0	1	0	0	0	62	62	3	3	14576	18	1
KRTAP5-5	439915	hgsc.bcm.edu	36	11	1607696	1607696	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3532-01A-01W-0831-10	TCGA-AA-3532-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001480	exon1	c.G50T	p.R17L	KRTAP5-5,lung,NS,Substitution - Missense,+1	.	.	COAD-AA-3532	Baylor	Missense_Mutation	SNP	1607696	1607696	KRTAP5-5	11	G	G	T	T	1	0	0	0	0	1	0	0	0	40	40	4	4	8442	26	1
SMARCB1	6598	hgsc.bcm.edu	36	22	22497452	22497452	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003073	exon7	c.T836G	p.F279C	.	.	.	COAD-AA-3542	Baylor	Missense_Mutation	SNP	22497452	22497452	SMARCB1	22	T	T	G	G	1	0	0	0	0	1	0	0	0	64	64	3	3	14590	29	1
KLK2	3817	hgsc.bcm.edu	36	19	56069911	56069911	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001002231	exon2	c.C169A	p.P57T	KLK2,skin,NS,Substitution - Missense,0	.	.	COAD-AA-3542	Baylor	Missense_Mutation	SNP	56069911	56069911	KLK2	19	C	C	A	A	1	0	0	0	0	1	0	0	0	22	22	2	2	8287	29	1
TRIM33	51592	hgsc.bcm.edu	36	1	114768854	114768854	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015906	exon10	c.A1742C	p.N581T	.	.	.	COAD-AA-3542	Baylor	Missense_Mutation	SNP	114768854	114768854	TRIM33	1	T	T	G	G	1	0	0	0	0	1	0	0	0	60	60	3	3	16308	29	1
ACSS3	79611	hgsc.bcm.edu	36	12	80137927	80137927	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024560	exon11	c.G1455T	p.M485I	ACSS3,lung,NS,Substitution - Missense,+2	.	.	COAD-AA-3542	Baylor	Missense_Mutation	SNP	80137927	80137927	ACSS3	12	G	G	T	T	1	0	0	0	0	1	0	0	0	45	45	2	2	190	29	1
PYROXD2	84795	hgsc.bcm.edu	36	10	100133610	100133610	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032709	exon16	c.G1681A	p.G561S	C10orf33,central_nervous_system,brain,Substitution - Missense,+1	.	.	COAD-AA-3542	Baylor	Missense_Mutation	SNP	100133610	100133610	PYROXD2	10	C	C	T	T	1	0	0	0	0	1	0	0	0	24	24	2	2	12700	29	1
GBF1	8729	hgsc.bcm.edu	36	10	104125237	104125237	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199378	exon30	c.G3792T	p.W1264C	.	.	.	COAD-AA-3542	Baylor	Missense_Mutation	SNP	104125237	104125237	GBF1	10	G	G	T	T	1	0	0	0	0	1	0	0	0	43	43	2	2	6180	29	1
KCND2	3751	hgsc.bcm.edu	36	7	120173199	120173199	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3543-01A-01W-0833-10	TCGA-AA-3543-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_012281	exon5	c.C1597T	p.R533X	KCND2,central_nervous_system,brain,Substitution - Nonsense,0	.	.	COAD-AA-3543	Baylor	Nonsense_Mutation	SNP	120173199	120173199	KCND2	7	C	C	T	T	1	0	0	0	0	0	1	0	0	19	19	5	1	7909	30	1
ADAM29	11086	hgsc.bcm.edu	36	4	176133864	176133864	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3544-01A-01W-0831-10	TCGA-AA-3544-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001130705	exon3	c.G613A	p.V205I	ADAM29,large_intestine,colon,Substitution - Missense,0	.	.	COAD-AA-3544	Baylor	Missense_Mutation	SNP	176133864	176133864	ADAM29	4	G	G	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	246	31	1
APC	324	hgsc.bcm.edu	36	5	112201603	112201603	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.C2359T	p.R787X	APC,large_intestine,right,Substitution - Nonsense,0	.	.	COAD-AA-3548	Baylor	Nonsense_Mutation	SNP	112201603	112201603	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	31	31	5	1	749	32	1
APC	324	hgsc.bcm.edu	36	5	112203419	112203419	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3549-01A-02W-0831-10	TCGA-AA-3549-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.G4175C	p.C1392S	APC,large_intestine,NS,Substitution - Nonsense,-1	.	.	COAD-AA-3549	Baylor	Missense_Mutation	SNP	112203419	112203419	APC	5	G	G	C	C	1	0	0	0	0	1	0	0	0	46	46	2	2	749	33	1
DMRT3	58524	hgsc.bcm.edu	36	9	980868	980868	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3553-01A-01W-0831-10	TCGA-AA-3553-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021240	exon2	c.C1282T	p.R428C	.	.	.	COAD-AA-3553	Baylor	Missense_Mutation	SNP	980868	980868	DMRT3	9	C	C	T	T	1	0	0	0	0	1	0	0	0	23	23	1	1	4528	35	1
COL1A2	1278	hgsc.bcm.edu	36	7	93892889	93892889	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000089	exon43	c.G2813A	p.R938H	.	.	.	COAD-AA-3554	Baylor	Missense_Mutation	SNP	93892889	93892889	COL1A2	7	G	G	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	3631	36	1
TIMP2	7077	hgsc.bcm.edu	36	17	74363372	74363372	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003255	exon5	c.A635G	p.Q212R	TIMP2,central_nervous_system,brain,Substitution - Nonsense,-1	.	.	COAD-AA-3554	Baylor	Missense_Mutation	SNP	74363372	74363372	TIMP2	17	T	T	C	C	1	0	0	0	0	1	0	0	0	55	55	3	3	15721	36	1
TBC1D8B	54885	hgsc.bcm.edu	36	X	105970651	105970651	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198881	exon10	c.C1600T	p.R534C	.	.	.	COAD-AA-3554	Baylor	Missense_Mutation	SNP	105970651	105970651	TBC1D8B	23	C	C	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	15431	36	1
BMPR2	659	hgsc.bcm.edu	36	2	203128383	203128383	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001204	exon12	c.C1750T	p.R584X	.	.	.	COAD-AA-3554	Baylor	Nonsense_Mutation	SNP	203128383	203128383	BMPR2	2	C	C	T	T	1	0	0	0	0	0	1	0	0	23	23	5	1	1446	36	1
DNMT1	1786	hgsc.bcm.edu	36	19	10107814	10107814	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001379	exon37	c.G4591C	p.E1531Q	.	.	.	COAD-AA-3555	Baylor	Missense_Mutation	SNP	10107814	10107814	DNMT1	19	C	C	G	G	1	0	0	0	0	1	0	0	0	31	31	4	4	4613	37	1
KLK2	3817	hgsc.bcm.edu	36	19	56069911	56069911	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_005551	exon2	c.C169A	p.P57T	KLK2,skin,NS,Substitution - Missense,0	.	.	COAD-AA-3555	Baylor	Missense_Mutation	SNP	56069911	56069911	KLK2	19	C	C	A	A	1	0	0	0	0	1	0	0	0	22	22	2	2	8287	37	1
CDC27	996	hgsc.bcm.edu	36	17	42571161	42571161	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001114091	exon13	c.T1665G	p.D555E	CDC27,lung,NS,Substitution - Missense,0	.	.	COAD-AA-3555	Baylor	Missense_Mutation	SNP	42571161	42571161	CDC27	17	A	A	C	C	1	0	0	0	0	1	0	0	0	8	8	3	3	3024	37	1
PIK3C3	5289	hgsc.bcm.edu	36	18	37830648	37830648	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_002647	exon9	c.G940A	p.D314N	.	.	.	COAD-AA-3555	Baylor	Missense_Mutation	SNP	37830648	37830648	PIK3C3	18	G	G	A	A	1	0	0	0	0	1	0	0	0	33	33	2	2	11757	37	1
PSMD6	9861	hgsc.bcm.edu	36	3	63983091	63983091	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_014814	exon2	c.C294A	p.S98R	.	.	.	COAD-AA-3555	Baylor	Missense_Mutation	SNP	63983091	63983091	PSMD6	3	G	G	T	T	1	0	0	0	0	1	0	0	0	38	38	4	4	12535	37	1
APC	324	hgsc.bcm.edu	36	5	112198721	112198721	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AA-3555-01A-01W-0831-10	TCGA-AA-3555-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_000038	exon15	c.C1918T	p.R640W	.	.	.	COAD-AA-3555	Baylor	Missense_Mutation	SNP	112198721	112198721	APC	5	C	C	T	T	1	0	0	0	0	1	0	0	0	19	19	1	1	749	37	1
KLK2	3817	hgsc.bcm.edu	36	19	56069911	56069911	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001002231	exon2	c.C169A	p.P57T	KLK2,skin,NS,Substitution - Missense,0	.	.	COAD-AA-A00A	Baylor	Missense_Mutation	SNP	56069911	56069911	KLK2	19	C	C	A	A	1	0	0	0	0	1	0	0	0	22	22	2	2	8287	114	1
SLC6A5	9152	hgsc.bcm.edu	36	11	20616608	20616608	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004211	exon13	c.G1897A	p.D633N	.	.	.	COAD-AA-A00A	Baylor	Missense_Mutation	SNP	20616608	20616608	SLC6A5	11	G	G	A	A	1	0	0	0	0	1	0	0	0	41	41	2	2	14504	114	1
ERBB3	2065	hgsc.bcm.edu	36	12	54765121	54765121	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005915	exon3	c.G310T	p.V104L	ERBB3,ovary,NS,Substitution - Missense,0	.	.	COAD-AA-A00A	Baylor	Missense_Mutation	SNP	54765121	54765121	ERBB3	12	G	G	T	T	1	0	0	0	0	1	0	0	0	40	40	4	4	5144	114	1
TXNDC3	51314	hgsc.bcm.edu	36	7	37883008	37883008	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_016616	exon12	c.G868T	p.E290X	.	.	.	COAD-AA-A00D	Baylor	Nonsense_Mutation	SNP	37883008	37883008	TXNDC3	7	G	G	T	T	1	0	0	0	0	0	1	0	0	45	45	5	2	16599	115	1
CDC27	996	hgsc.bcm.edu	36	17	42571161	42571161	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114091	exon13	c.T1665G	p.D555E	CDC27,lung,NS,Substitution - Missense,0	.	.	COAD-AA-A00E	Baylor	Missense_Mutation	SNP	42571161	42571161	CDC27	17	A	A	C	C	1	0	0	0	0	1	0	0	0	8	8	3	3	3024	116	1
SPNS3	201305	hgsc.bcm.edu	36	17	4337918	4337918	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182538	exon12	c.G1519A	p.A507T	SPNS3,large_intestine,NS,Substitution - Missense,0	.	.	COAD-AA-A00E	Baylor	Missense_Mutation	SNP	4337918	4337918	SPNS3	17	G	G	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	14889	116	1
MED13L	23389	hgsc.bcm.edu	36	12	114885614	114885614	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015335	exon30	c.A6481G	p.T2161A	MED13L,lung,NS,Substitution - Missense,0	.	.	COAD-AA-A00E	Baylor	Missense_Mutation	SNP	114885614	114885614	MED13L	12	T	T	C	C	1	0	0	0	0	1	0	0	0	60	60	3	3	9296	116	1
LNX1	84708	hgsc.bcm.edu	36	4	54042745	54042745	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00E-01A-01W-A005-10	TCGA-AA-A00E-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126328	exon7	c.C1384T	p.R462C	.	.	.	COAD-AA-A00E	Baylor	Missense_Mutation	SNP	54042745	54042745	LNX1	4	G	G	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	8744	116	1
TBXAS1	6916	hgsc.bcm.edu	36	7	139257510	139257510	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01A-02W-A005-10	TCGA-AA-A00J-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001061	exon4	c.G257A	p.R86Q	TBXAS1,breast,NS,Substitution - Missense,+1	.	.	COAD-AA-A00J	Baylor	Missense_Mutation	SNP	139257510	139257510	TBXAS1	7	G	G	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	15469	118	1
SGK2	10110	hgsc.bcm.edu	36	20	41631484	41631484	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01A-02W-A005-10	TCGA-AA-A00J-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_170693	exon6	c.C274T	p.R92W	SGK2,central_nervous_system,brain,Substitution - Missense,0	.	.	COAD-AA-A00J	Baylor	Missense_Mutation	SNP	41631484	41631484	SGK2	20	C	C	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	14031	118	1
FCGBP	8857	hgsc.bcm.edu	36	19	45100661	45100661	+	Missense_Mutation	SNP	C	G	G	rs45613437	unknown	TCGA-AA-A00J-01A-02W-A005-10	TCGA-AA-A00J-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003890	exon8	c.G4018C	p.V1340L	.	.	.	COAD-AA-A00J	Baylor	Missense_Mutation	SNP	45100661	45100661	FCGBP	19	C	G	G	G	1	0	0	0	0	1	0	0	0	19	19	4	4	5699	118	1
ATF7IP	55729	hgsc.bcm.edu	36	12	14469228	14469228	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01A-02W-A005-10	TCGA-AA-A00J-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018179	exon2	c.T1112C	p.V371A	.	.	.	COAD-AA-A00J	Baylor	Missense_Mutation	SNP	14469228	14469228	ATF7IP	12	T	T	C	C	1	0	0	0	0	1	0	0	0	57	57	3	3	1069	118	1
ADAMTS3	9508	hgsc.bcm.edu	36	4	73380310	73380310	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01A-02W-A005-10	TCGA-AA-A00J-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014243	exon19	c.G2648A	p.R883H	ADAMTS3,lung,NS,Substitution - Missense,0	.	.	COAD-AA-A00J	Baylor	Missense_Mutation	SNP	73380310	73380310	ADAMTS3	4	C	C	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	266	118	1
LRP2	4036	hgsc.bcm.edu	36	2	169809626	169809626	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01A-02W-A005-10	TCGA-AA-A00J-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004525	exon22	c.C3253T	p.R1085C	LRP2,central_nervous_system,brain,Substitution - Missense,+1	.	.	COAD-AA-A00J	Baylor	Missense_Mutation	SNP	169809626	169809626	LRP2	2	G	G	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	8824	118	1
MAP2	4133	hgsc.bcm.edu	36	2	210226252	210226252	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01A-02W-A005-10	TCGA-AA-A00J-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031847	exon4	c.G113T	p.G38V	.	.	.	COAD-AA-A00J	Baylor	Missense_Mutation	SNP	210226252	210226252	MAP2	2	G	G	T	T	1	0	0	0	0	1	0	0	0	43	43	2	2	9100	118	1
UNC13B	10497	hgsc.bcm.edu	36	9	35285792	35285792	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00J-01A-02W-A005-10	TCGA-AA-A00J-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006377	exon8	c.C626G	p.P209R	UNC13B,large_intestine,colon,Substitution - Missense,+1	.	.	COAD-AA-A00J	Baylor	Missense_Mutation	SNP	35285792	35285792	UNC13B	9	C	C	G	G	1	0	0	0	0	1	0	0	0	22	22	2	2	16784	118	1
APC	324	hgsc.bcm.edu	36	5	112202952	112202952	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00J-01A-02W-A005-10	TCGA-AA-A00J-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.T3708G	p.I1236M	APC,large_intestine,rectum,Substitution - Missense,+2	.	.	COAD-AA-A00J	Baylor	Missense_Mutation	SNP	112202952	112202952	APC	5	T	T	G	G	1	0	0	0	0	1	0	0	0	61	61	3	3	749	118	1
MTOR	2475	hgsc.bcm.edu	36	1	11107160	11107160	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00K-01A-02W-A005-10	TCGA-AA-A00K-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004958	exon47	c.C6644A	p.S2215Y	FRAP1,large_intestine,NS,Substitution - Missense,0	.	.	COAD-AA-A00K	Baylor	Missense_Mutation	SNP	11107160	11107160	MTOR	1	G	G	T	T	1	0	0	0	0	1	0	0	0	33	33	2	2	9811	119	1
REM1	28954	hgsc.bcm.edu	36	20	29533782	29533783	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014012	exon4	c.455_456insG	p.Q152fs	REM1,pancreas,NS,Substitution - Missense,-1	.	.	COAD-AA-A00R	Baylor	Frame_Shift_Ins	INS	29533782	29533783	REM1	20	-	-	G	G	1	0	1	1	0	0	0	0	0	7	7	5	5	13054	124	1
CARD11	84433	hgsc.bcm.edu	36	7	2940735	2940735	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032415	exon10	c.A1396G	p.S466G	.	.	.	COAD-AA-A00R	Baylor	Missense_Mutation	SNP	2940735	2940735	CARD11	7	T	T	C	C	1	0	0	0	0	1	0	0	0	55	55	3	3	2609	124	1
MVP	9961	hgsc.bcm.edu	36	16	29755688	29755688	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017458	exon7	c.A817G	p.I273V	.	.	.	COAD-AA-A00R	Baylor	Missense_Mutation	SNP	29755688	29755688	MVP	16	A	A	G	G	1	0	0	0	0	1	0	0	0	8	8	3	3	9853	124	1
ERBB3	2065	hgsc.bcm.edu	36	12	54765121	54765121	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00R-01A-01W-A005-10	TCGA-AA-A00R-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005915	exon3	c.G310A	p.V104M	ERBB3,ovary,NS,Substitution - Missense,0	.	.	COAD-AA-A00R	Baylor	Missense_Mutation	SNP	54765121	54765121	ERBB3	12	G	G	A	A	1	0	0	0	0	1	0	0	0	40	40	1	1	5144	124	1
APC	324	hgsc.bcm.edu	36	5	112156042	112156042	+	Nonsense_Mutation	SNP	C	C	T	rs62619935	unknown	TCGA-AA-A00Z-01A-01W-A005-10	TCGA-AA-A00Z-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127510	exon8	c.C646T	p.R216X	.	.	.	COAD-AA-A00Z	Baylor	Nonsense_Mutation	SNP	112156042	112156042	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	27	27	5	1	749	127	1
CDC27	996	hgsc.bcm.edu	36	17	42571161	42571161	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01Q-01A-01W-A005-10	TCGA-AA-A01Q-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114091	exon13	c.T1665G	p.D555E	CDC27,lung,NS,Substitution - Missense,0	.	.	COAD-AA-A01Q	Baylor	Missense_Mutation	SNP	42571161	42571161	CDC27	17	A	C	C	C	1	0	0	0	0	1	0	0	0	8	8	3	3	3024	136	1
ITGAD	3681	hgsc.bcm.edu	36	16	31335406	31335406	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01A-01W-A005-10	TCGA-AA-A01Q-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005353	exon20	c.G2437A	p.G813R	ITGAD,skin,NS,Substitution - Missense,0	.	.	COAD-AA-A01Q	Baylor	Missense_Mutation	SNP	31335406	31335406	ITGAD	16	G	G	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	7775	136	1
LCT	3938	hgsc.bcm.edu	36	2	136286935	136286935	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01A-01W-A005-10	TCGA-AA-A01Q-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002299	exon7	c.G1769A	p.R590H	.	.	.	COAD-AA-A01Q	Baylor	Missense_Mutation	SNP	136286935	136286935	LCT	2	C	C	T	T	1	0	0	0	0	1	0	0	0	27	27	1	1	8571	136	1
LRP1B	53353	hgsc.bcm.edu	36	2	141533077	141533077	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3574-01A-01W-0831-10	TCGA-AG-3574-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018557	exon9	c.G1253T	p.G418V	.	.	.	READ-AG-3574	Baylor	Missense_Mutation	SNP	141533077	141533077	LRP1B	2	C	C	A	A	1	0	0	0	0	1	0	0	0	18	18	2	2	8823	161	1
MAP3K3	4215	hgsc.bcm.edu	36	17	59124778	59124778	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3587-01A-01W-0831-10	TCGA-AG-3587-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002401	exon16	c.G1790A	p.R597Q	.	.	.	READ-AG-3587	Baylor	Missense_Mutation	SNP	59124778	59124778	MAP3K3	17	G	G	A	A	1	0	0	0	0	1	0	0	0	39	39	1	1	9116	170	1
KRTAP5-5	439915	hgsc.bcm.edu	36	11	1607696	1607696	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-3593-01A-01W-0831-10	TCGA-AG-3593-10A-01W-0831-10	G	G	G	T	G	T	Unknown	Valid	Germline	Phase_I	Capture	454			SOLID	NM_001001480	exon1	c.G50T	p.R17L	KRTAP5-5,lung,NS,Substitution - Missense,+1	.	.	READ-AG-3593	Baylor	Missense_Mutation	SNP	1607696	1607696	KRTAP5-5	11	G	T	T	T	1	0	0	0	0	1	0	0	0	40	40	4	4	8442	171	1
APC	324	hgsc.bcm.edu	36	5	112156042	112156042	+	Nonsense_Mutation	SNP	C	C	T	rs62619935	unknown	TCGA-AG-3598-01A-01W-0833-10	TCGA-AG-3598-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127510	exon8	c.C646T	p.R216X	.	.	.	READ-AG-3598	Baylor	Nonsense_Mutation	SNP	112156042	112156042	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	27	27	6	1	749	173	1
SYNE1	23345	hgsc.bcm.edu	36	6	152680961	152680961	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AG-3601-01A-01W-0833-10	TCGA-AG-3601-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015293	exon1	c.T92G	p.L31R	SYNE1,large_intestine,colon,Substitution - Missense,0	.	.	READ-AG-3601	Baylor	Missense_Mutation	SNP	152680961	152680961	SYNE1	6	A	A	C	C	1	0	0	0	0	1	0	0	0	3	3	3	3	15253	176	1
APC	324	hgsc.bcm.edu	36	5	112164935	112164935	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3601-01A-01W-0833-10	TCGA-AG-3601-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon6	c.C736T	p.Q246X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.	READ-AG-3601	Baylor	Nonsense_Mutation	SNP	112164935	112164935	APC	5	C	C	T	T	1	0	0	0	0	0	1	0	0	29	29	6	2	749	176	1
DNMT1	1786	hgsc.bcm.edu	36	19	10107814	10107814	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AG-3609-01A-02W-0833-10	TCGA-AG-3609-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130823	exon38	c.G4639C	p.E1547Q	.	.	.	READ-AG-3609	Baylor	Missense_Mutation	SNP	10107814	10107814	DNMT1	19	C	C	G	G	1	0	0	0	0	1	0	0	0	31	31	4	4	4613	180	1
MAP3K12	7786	hgsc.bcm.edu	36	12	52163995	52163995	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3611-01A-01W-0833-10	TCGA-AG-3611-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001193511	exon8	c.A1325G	p.E442G	MAP3K12,breast,NS,Substitution - Missense,-1	.	.	READ-AG-3611	Baylor	Missense_Mutation	SNP	52163995	52163995	MAP3K12	12	T	T	C	C	1	0	0	0	0	1	0	0	0	54	54	3	3	9111	181	1
APC	324	hgsc.bcm.edu	36	5	112202815	112202815	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-A00C-01A-01W-A005-10	TCGA-AG-A00C-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.G3571T	p.E1191X	.	.	.	READ-AG-A00C	Baylor	Nonsense_Mutation	SNP	112202815	112202815	APC	5	G	G	T	T	1	0	0	0	0	0	1	0	0	37	37	6	4	749	207	1
BAI3	577	hgsc.bcm.edu	36	6	70127914	70127914	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_001704	exon29	c.A4028G	p.Y1343C	BAI3,lung,NS,Substitution - Missense,+1	.	.	READ-AG-A00Y	Baylor	Missense_Mutation	SNP	70127914	70127914	BAI3	6	A	A	G	G	1	0	0	0	0	1	0	0	0	14	14	3	3	1278	209	1
KRTAP5-5	439915	hgsc.bcm.edu	36	11	1607696	1607696	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	T	G	T	Unknown	Valid	Germline	Phase_I	Capture	454	.	.	SOLID	NM_001001480	exon1	c.G50T	p.R17L	KRTAP5-5,lung,NS,Substitution - Missense,+1	.	.	READ-AG-A00Y	Baylor	Missense_Mutation	SNP	1607696	1607696	KRTAP5-5	11	G	G	T	T	1	0	0	0	0	1	0	0	0	40	40	4	4	8442	209	1
RUNX1T1	862	hgsc.bcm.edu	36	8	93052189	93052189	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A015-01A-01W-A005-10	TCGA-AG-A015-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001198626	exon12	c.C1412T	p.A471V	RUNX1T1,large_intestine,rectum,Substitution - Missense,0	.	.	READ-AG-A015	Baylor	Missense_Mutation	SNP	93052189	93052189	RUNX1T1	8	G	G	A	A	1	0	0	0	0	1	0	0	0	38	38	1	1	13571	212	1
PADI3	51702	hgsc.bcm.edu	36	1	17475928	17475928	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-A015-01A-01W-A005-10	TCGA-AG-A015-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016233	exon13	c.G1525C	p.G509R	PADI3,breast,NS,Substitution - Missense,0	.	.	READ-AG-A015	Baylor	Missense_Mutation	SNP	17475928	17475928	PADI3	1	G	G	C	C	1	0	0	0	0	1	0	0	0	39	39	4	4	11228	212	1
