Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	gdac.broadinstitute.org_LGG.CopyNumber_Gistic2.Level_4.2012091300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	table.1.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	gdac.broadinstitute.org_LGG.CopyNumber_Gistic2.Level_4.2012091300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	D6V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	gdac.broadinstitute.org_LGG.CopyNumber_Gistic2.Level_4.2012091300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	D25V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	gdac.broadinstitute.org_LGG.CopyNumber_Gistic2.Level_4.2012091300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	D25V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	gdac.broadinstitute.org_LGG.CopyNumber_Gistic2.Level_4.2012091300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	D33V5.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	gdac.broadinstitute.org_LGG.CopyNumber_Gistic2.Level_4.2012091300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	D15V5.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	gdac.broadinstitute.org_LGG.CopyNumber_Gistic2.Level_4.2012091300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	D11V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	gdac.broadinstitute.org_LGG.CopyNumber_Gistic2.Level_4.2012091300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	D26V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	gdac.broadinstitute.org_LGG.CopyNumber_Gistic2.Level_4.2012091300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	D4V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	gdac.broadinstitute.org_LGG.CopyNumber_Gistic2.Level_4.2012091300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	D15V6.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	gdac.broadinstitute.org_LGG.CopyNumber_Gistic2.Level_4.2012091300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	D9V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	gdac.broadinstitute.org_LGG.CopyNumber_Gistic2.Level_4.2012091300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	D25V6.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	gdac.broadinstitute.org_LGG.CopyNumber_Gistic2.Level_4.2012091300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
cnv2cluster1.sample.gene.table.file	all_lesions.conf_99.txt	gdac.broadinstitute.org_LGG.CopyNumber_Gistic2.Level_4.2012091300.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG.clin.merged.picked.txt	gdac.broadinstitute.org_LGG.Clinical_Pick_Tier1.Level_4.2012091300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	table.1.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG.clin.merged.picked.txt	gdac.broadinstitute.org_LGG.Clinical_Pick_Tier1.Level_4.2012091300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	D6V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG.clin.merged.picked.txt	gdac.broadinstitute.org_LGG.Clinical_Pick_Tier1.Level_4.2012091300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	D25V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG.clin.merged.picked.txt	gdac.broadinstitute.org_LGG.Clinical_Pick_Tier1.Level_4.2012091300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	D25V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG.clin.merged.picked.txt	gdac.broadinstitute.org_LGG.Clinical_Pick_Tier1.Level_4.2012091300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	D33V5.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG.clin.merged.picked.txt	gdac.broadinstitute.org_LGG.Clinical_Pick_Tier1.Level_4.2012091300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	D15V5.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG.clin.merged.picked.txt	gdac.broadinstitute.org_LGG.Clinical_Pick_Tier1.Level_4.2012091300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	D11V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG.clin.merged.picked.txt	gdac.broadinstitute.org_LGG.Clinical_Pick_Tier1.Level_4.2012091300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	D26V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG.clin.merged.picked.txt	gdac.broadinstitute.org_LGG.Clinical_Pick_Tier1.Level_4.2012091300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	D4V2.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG.clin.merged.picked.txt	gdac.broadinstitute.org_LGG.Clinical_Pick_Tier1.Level_4.2012091300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	D15V6.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG.clin.merged.picked.txt	gdac.broadinstitute.org_LGG.Clinical_Pick_Tier1.Level_4.2012091300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	D9V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG.clin.merged.picked.txt	gdac.broadinstitute.org_LGG.Clinical_Pick_Tier1.Level_4.2012091300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	D25V6.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG.clin.merged.picked.txt	gdac.broadinstitute.org_LGG.Clinical_Pick_Tier1.Level_4.2012091300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
Correlate_Clinical_Cnvs_onlysig2.clinical.info.file	LGG.clin.merged.picked.txt	gdac.broadinstitute.org_LGG.Clinical_Pick_Tier1.Level_4.2012091300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00496:12	Correlate_Clinical_vs_CopyNumber_Focal_2012091300	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_LGG.Correlate_Clinical_vs_CopyNumber_Focal.Level_4.2012091300.0.0	yes
