
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.73.3976/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.73.3976/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/LGG/1929627/1.GDAC_mergedClustering.Finished/LGG.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LGG/1709121/1.GDAC_clinicalDataPicker.Finished/LGG.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=1", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=161, in cluster file=147, common to both=146
[1]   8 146
[1] "MRNA_CNMF"
[1] 3
 1  2  3 
 9 10  8 
 1  2  3 
 9 10  8 
[1] "MRNA_CHIERARCHICAL"
[1] 3
 1  2  3 
 9  7 11 
 1  2  3 
 9  7 11 
[1] "CN_CNMF"
[1] 3
 1  2  3 
49 42 54 
 1  2  3 
49 42 54 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3  4 
63 23 16 38 
 1  2  3  4 
63 23 16 38 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3 
13 17 17 
 1  2  3 
13 17 17 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
12 16 19 
 1  2  3 
12 16 19 
[1] "MIRSEQ_CNMF"
[1] 3
 1  2  3 
22 25 20 
 1  2  3 
22 25 20 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
 1  2  3  4 
25 15 13 14 
 1  2  3  4 
25 15 13 14 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "RADIATIONS.RADIATION.REGIMENINDICATION"
[13] "NEOADJUVANTTHERAPY"                    
[14] "BATCHNUMBER"                           

Input Data has 14 rows and 146 columns.

[1] "Batch" "14"   
[1] "Last Follow UP"
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-5390 
         143          234         1335          481          323         1965 
TCGA-CS-5393 TCGA-CS-5394 TCGA-CS-5395 TCGA-CS-5396 TCGA-CS-5397 TCGA-CS-6186 
         857            3          638          289          194          538 
TCGA-CS-6188 TCGA-CS-6290 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-CS-6668 
         725          546          378          257          229          243 
TCGA-CS-6669 TCGA-CS-6670 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 
         224          200         2977         1786         1726         1458 
TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5279 TCGA-DB-5280 TCGA-DB-5281 
        1594         1419         1526         1354          404         1614 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 TCGA-DH-5144 TCGA-DU-5847 
         607          968          921          438          244          547 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5852 TCGA-DU-5853 TCGA-DU-5854 TCGA-DU-5855 
         442          530           NA          407          257          207 
TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
        5546          576          531          460         6423         1219 
TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6400 
         682         1491         2286         1401           NA           37 
TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 
        2660          213          354           NA          605          511 
TCGA-DU-6407 TCGA-DU-6408 TCGA-DU-6410 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7007 
        2875         3469          242          234           NA           NA 
TCGA-DU-7008 TCGA-DU-7009 TCGA-DU-7010 TCGA-DU-7011 TCGA-DU-7012 TCGA-DU-7013 
        4752         4205           NA           NA           NA           NA 
TCGA-DU-7014 TCGA-DU-7015 TCGA-DU-7018 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
          NA         2761           NA          800           NA           NA 
TCGA-DU-7294 TCGA-DU-7298 TCGA-DU-7299 TCGA-DU-7300 TCGA-DU-7301 TCGA-DU-7302 
        2868           NA           NA           NA           NA         1834 
TCGA-DU-7304 TCGA-DU-7306 TCGA-DU-7309 TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 
          NA         1277           84         1525         2051         1251 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 TCGA-E1-5322 
        2432         1762         4084         2378         2907         3978 
TCGA-EZ-7264 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-5965 TCGA-FG-6688 
         160          787          407          377          979          220 
TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-6691 TCGA-FG-6692 TCGA-FG-7634 TCGA-FG-7636 
         189          142          102          126          467          124 
TCGA-FG-7637 TCGA-FG-7638 TCGA-FG-7643 TCGA-FN-7833 TCGA-HT-7467 TCGA-HT-7468 
         802          233           27            4            3          146 
TCGA-HT-7470 TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7474 TCGA-HT-7475 TCGA-HT-7476 
         268            1          503          114          446          199 
TCGA-HT-7478 TCGA-HT-7479 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7482 TCGA-HT-7483 
         194           13         2231         1800         1644         4687 
TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7602 TCGA-HT-7603 TCGA-HT-7604 TCGA-HT-7605 
         121           94          907          705         3283          139 
TCGA-HT-7606 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 TCGA-HT-7610 TCGA-HW-7486 
         526           NA          671         1399         1706          608 
TCGA-HW-7487 TCGA-HW-7489 TCGA-HW-7490 TCGA-HW-7491 TCGA-HW-7493 TCGA-HW-7495 
         409          141          165          854          285           13 
TCGA-IK-7675 TCGA-IK-8125 
          NA          909 
Variable 1:'AGE':	nDistinctValues=48,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=48,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=120,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=19,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=120,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'BATCH.NUMBER':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "GENDER"                                
[3] "KARNOFSKY.PERFORMANCE.SCORE"           
[4] "HISTOLOGICAL.TYPE"                     
[5] "RADIATIONS.RADIATION.REGIMENINDICATION"
[6] "NEOADJUVANT.THERAPY"                   
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 146 columns, 1 survival variables, and 6 non-survival variables.
AGE, nv=48, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=5, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2      0 1
  subtype1 5 4
  subtype2 7 3
  subtype3 6 2
subtype1 subtype2 subtype3 
       9       10        8 
subtype1 subtype2 subtype3 
       4        3        2 
$subtype1
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-DB-5273 TCGA-DB-5280 TCGA-DH-5142 
       43.89        15.81        10.62        58.72        13.28        30.28 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5322 
       50.14        67.43       130.78 

$subtype2
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-DB-5274 TCGA-DB-5275 TCGA-DH-5140 
       64.60         0.10         9.50        56.75        47.93        19.96 
TCGA-DH-5141 TCGA-DH-5144 TCGA-E1-5304 TCGA-E1-5318 
       31.82         8.02        41.13        78.18 

$subtype3
TCGA-CS-5395 TCGA-DB-5270 TCGA-DB-5276 TCGA-DB-5277 TCGA-DB-5278 TCGA-DB-5281 
       20.98        97.87        52.41        46.65        50.17        53.06 
TCGA-DH-5143 TCGA-E1-5311 
       14.40       134.27 

subtype1 subtype2 subtype3 
   10.62     0.10    14.40 
subtype1 subtype2 subtype3 
  130.78    78.18   134.27 
subtype1 subtype2 subtype3 
  43.890   36.475   51.290 
[1] "10.6 - 130.8 (43.9)" "0.1 - 78.2 (36.5)"   "14.4 - 134.3 (51.3)"
 [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [7] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[19] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[25] "subtype3" "subtype2" "subtype1"
 [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [7] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[19] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[25] "subtype3" "subtype2" "subtype1"
 [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [7] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[19] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[25] "subtype3" "subtype2" "subtype1"
D1V2, continuous
D1V3, binary
          cls
clus       0 1
  subtype1 2 7
  subtype2 6 4
  subtype3 1 7
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2    7
  subtype2    6    4
  subtype3    1    7
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        2        6        1
  MALE          7        4        7
D1V4, continuous
D1V5, multiclass
D1V6, binary
          cls
clus       0 1
  subtype1 7 2
  subtype2 8 2
  subtype3 4 4
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7    2
  subtype2    8    2
  subtype3    4    4
     clus
vv    subtype1 subtype2 subtype3
  NO         7        8        4
  YES        2        2        4
D1V7, binary
          cls
clus       0 1
  subtype1 5 4
  subtype2 7 3
  subtype3 5 3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5    4
  subtype2    7    3
  subtype3    5    3
     clus
vv    subtype1 subtype2 subtype3
  NO         5        7        5
  YES        4        3        3

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2      0 1
  subtype1 5 4
  subtype2 5 2
  subtype3 8 3
subtype1 subtype2 subtype3 
       9        7       11 
subtype1 subtype2 subtype3 
       4        2        3 
$subtype1
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-DB-5273 TCGA-DB-5280 TCGA-DH-5142 
       43.89        15.81        10.62        58.72        13.28        30.28 
TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5322 
       50.14        67.43       130.78 

$subtype2
TCGA-CS-5395 TCGA-DB-5270 TCGA-DB-5276 TCGA-DB-5278 TCGA-DB-5281 TCGA-DH-5143 
       20.98        97.87        52.41        50.17        53.06        14.40 
TCGA-E1-5311 
      134.27 

$subtype3
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5277 
       64.60         0.10         9.50        56.75        47.93        46.65 
TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5144 TCGA-E1-5304 TCGA-E1-5318 
       19.96        31.82         8.02        41.13        78.18 

subtype1 subtype2 subtype3 
   10.62    14.40     0.10 
subtype1 subtype2 subtype3 
  130.78   134.27    78.18 
subtype1 subtype2 subtype3 
   43.89    52.41    41.13 
[1] "10.6 - 130.8 (43.9)" "14.4 - 134.3 (52.4)" "0.1 - 78.2 (41.1)"  
 [1] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [7] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[13] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[19] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[25] "subtype2" "subtype3" "subtype1"
 [1] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [7] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[13] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[19] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[25] "subtype2" "subtype3" "subtype1"
 [1] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [7] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[13] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[19] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[25] "subtype2" "subtype3" "subtype1"
D2V2, continuous
D2V3, binary
          cls
clus       0 1
  subtype1 2 7
  subtype2 1 6
  subtype3 6 5
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2    7
  subtype2    1    6
  subtype3    6    5
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        2        1        6
  MALE          7        6        5
D2V4, continuous
D2V5, multiclass
D2V6, binary
          cls
clus       0 1
  subtype1 7 2
  subtype2 4 3
  subtype3 8 3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7    2
  subtype2    4    3
  subtype3    8    3
     clus
vv    subtype1 subtype2 subtype3
  NO         7        4        8
  YES        2        3        3
D2V7, binary
          cls
clus       0 1
  subtype1 5 4
  subtype2 4 3
  subtype3 8 3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5    4
  subtype2    4    3
  subtype3    8    3
     clus
vv    subtype1 subtype2 subtype3
  NO         5        4        8
  YES        4        3        3

Clustering(3) Variable = CN_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 28 21
  subtype2 26 16
  subtype3 43 11
subtype1 subtype2 subtype3 
      49       42       54 
subtype1 subtype2 subtype3 
      21       16       11 
$subtype1
TCGA-CS-4938 TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-5393 TCGA-CS-5395 TCGA-CS-5397 
        4.70         7.69        43.89        28.18        20.98         6.38 
TCGA-CS-6186 TCGA-CS-6188 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5276 TCGA-DB-5280 
       17.69        23.84         7.36        97.87        52.41        13.28 
TCGA-DH-5140 TCGA-DH-5143 TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-5855 
       19.96        14.40        17.98         6.74         8.45         6.81 
TCGA-DU-6392 TCGA-DU-6395 TCGA-DU-6401 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 
      211.17        49.02        87.45         7.00        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6542 TCGA-DU-7006 TCGA-DU-7011 
       19.89        16.80        94.52         7.69        11.47       105.21 
TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7290 TCGA-DU-7292 
        6.51         8.84        90.77        26.30        10.36         7.96 
TCGA-DU-7306 TCGA-FG-5965 TCGA-FG-6688 TCGA-FG-6689 TCGA-FG-6692 TCGA-FG-7643 
       41.98        32.19         7.23         6.21         4.14         0.89 
TCGA-FN-7833 TCGA-HT-7474 TCGA-HT-7478 TCGA-HT-7485 TCGA-HT-7602 TCGA-HT-7603 
        0.13         3.75         6.38         3.98        29.82        23.18 
TCGA-HW-7490 
        5.42 

$subtype2
TCGA-CS-4943 TCGA-CS-6665 TCGA-CS-6666 TCGA-CS-6667 TCGA-DB-5275 TCGA-DB-5277 
       15.81        12.43         8.45         7.53        47.93        46.65 
TCGA-DB-5281 TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5871 TCGA-DU-6396 TCGA-DU-6399 
       53.06        17.42        13.38        18.94        75.16        65.72 
TCGA-DU-6408 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7014 TCGA-DU-7298 
      114.05        62.96       156.23        14.99       117.40        18.90 
TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7309 TCGA-E1-5303 TCGA-E1-5304 
       43.99        25.91        23.31         2.76        67.43        41.13 
TCGA-E1-5305 TCGA-E1-5307 TCGA-E1-5322 TCGA-FG-5963 TCGA-FG-5964 TCGA-FG-6691 
       79.96        57.93       130.78        13.38        12.39         3.35 
TCGA-FG-7636 TCGA-HT-7470 TCGA-HT-7473 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7479 
        4.08         8.81        16.54        14.66         6.54         0.43 
TCGA-HT-7482 TCGA-HT-7604 TCGA-HT-7606 TCGA-HW-7489 TCGA-HW-7493 TCGA-IK-7675 
       54.05       107.93        17.29         4.64         9.37        18.97 

$subtype3
TCGA-CS-4944 TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6290 TCGA-CS-6668 
       10.62        64.60         0.10         9.50        17.95         7.99 
TCGA-CS-6670 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5278 TCGA-DB-5279 TCGA-DH-5141 
        6.58        58.72        56.75        50.17        44.52        31.82 
TCGA-DH-5142 TCGA-DH-5144 TCGA-DU-5849 TCGA-DU-5870 TCGA-DU-5872 TCGA-DU-5874 
       30.28         8.02        14.53       182.33        17.46        15.12 
TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6397 TCGA-DU-6400 TCGA-DU-6410 TCGA-DU-7009 
       40.08        22.42        46.06         1.22         7.96       138.25 
TCGA-DU-7018 TCGA-DU-7294 TCGA-DU-7300 TCGA-DU-7302 TCGA-E1-5302 TCGA-E1-5311 
       30.67        94.29        62.01        60.30        50.14       134.27 
TCGA-E1-5318 TCGA-E1-5319 TCGA-EZ-7264 TCGA-FG-5962 TCGA-FG-6690 TCGA-FG-7634 
       78.18        95.57         5.26        25.87         4.67        15.35 
TCGA-FG-7638 TCGA-HT-7467 TCGA-HT-7468 TCGA-HT-7472 TCGA-HT-7480 TCGA-HT-7481 
        7.66         0.10         4.80         0.03        73.35        59.18 
TCGA-HT-7483 TCGA-HT-7601 TCGA-HT-7605 TCGA-HT-7607 TCGA-HT-7608 TCGA-HT-7609 
      154.09         3.09         4.57         3.16        22.06        45.99 
TCGA-HT-7610 TCGA-HW-7486 TCGA-HW-7487 TCGA-HW-7491 TCGA-HW-7495 TCGA-IK-8125 
       56.09        19.99        13.45        28.08         0.43        29.88 

subtype1 subtype2 subtype3 
    0.13     0.43     0.03 
subtype1 subtype2 subtype3 
  211.17   156.23   182.33 
subtype1 subtype2 subtype3 
  13.280   18.920   24.145 
[1] "0.1 - 211.2 (13.3)" "0.4 - 156.2 (18.9)" "0.0 - 182.3 (24.1)"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [19] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [25] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [31] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [37] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [73] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[103] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[109] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[121] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[145] "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [19] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [25] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [31] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [37] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [73] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[103] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[109] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[121] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[145] "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [19] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [25] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [31] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
 [37] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [61] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
 [73] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[103] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[109] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[115] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[121] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[145] "subtype3"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1 24 25
  subtype2 16 26
  subtype3 22 32
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   24   25
  subtype2   16   26
  subtype3   22   32
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       24       16       22
  MALE         25       26       32
D3V4, continuous
D3V5, multiclass
D3V6, binary
          cls
clus        0  1
  subtype1 33 16
  subtype2 31 11
  subtype3 22 32
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   33   16
  subtype2   31   11
  subtype3   22   32
     clus
vv    subtype1 subtype2 subtype3
  NO        33       31       22
  YES       16       11       32
D3V7, binary
          cls
clus        0  1
  subtype1 20 29
  subtype2 23 19
  subtype3 28 26
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   20   29
  subtype2   23   19
  subtype3   28   26
     clus
vv    subtype1 subtype2 subtype3
  NO        20       23       28
  YES       29       19       26

Clustering(4) Variable = METHLYATION_CNMF
D4V1, survival
          sevent
clus2       0  1
  subtype1 44 19
  subtype2  8 15
  subtype3 14  2
  subtype4 30  8
subtype1 subtype2 subtype3 subtype4 
      63       23       16       38 
subtype1 subtype2 subtype3 subtype4 
      19       15        2        8 
$subtype1
TCGA-CS-4938 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-5393 TCGA-CS-6665 TCGA-CS-6666 
        4.70        43.89        15.81        28.18        12.43         8.45 
TCGA-CS-6667 TCGA-DB-5273 TCGA-DB-5275 TCGA-DB-5277 TCGA-DB-5280 TCGA-DB-5281 
        7.53        58.72        47.93        46.65        13.28        53.06 
TCGA-DH-5142 TCGA-DH-5143 TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5855 TCGA-DU-5871 
       30.28        14.40        17.42        13.38         6.81        18.94 
TCGA-DU-5872 TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6407 
       17.46        49.02        75.16        65.72        87.45        94.52 
TCGA-DU-6408 TCGA-DU-6542 TCGA-DU-7007 TCGA-DU-7008 TCGA-DU-7010 TCGA-DU-7014 
      114.05         7.69        62.96       156.23        14.99       117.40 
TCGA-DU-7015 TCGA-DU-7019 TCGA-DU-7299 TCGA-DU-7301 TCGA-DU-7304 TCGA-DU-7306 
       90.77        26.30        43.99        25.91        23.31        41.98 
TCGA-DU-7309 TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5305 TCGA-E1-5322 
        2.76        50.14        67.43        41.13        79.96       130.78 
TCGA-FG-5965 TCGA-FG-6689 TCGA-FG-6690 TCGA-FG-7636 TCGA-FN-7833 TCGA-HT-7470 
       32.19         6.21         4.67         4.08         0.13         8.81 
TCGA-HT-7472 TCGA-HT-7473 TCGA-HT-7475 TCGA-HT-7476 TCGA-HT-7478 TCGA-HT-7482 
        0.03        16.54        14.66         6.54         6.38        54.05 
TCGA-HT-7483 TCGA-HT-7485 TCGA-HT-7601 TCGA-HT-7604 TCGA-HT-7606 TCGA-HT-7609 
      154.09         3.98         3.09       107.93        17.29        45.99 
TCGA-HW-7490 TCGA-HW-7493 TCGA-IK-7675 
        5.42         9.37        18.97 

$subtype2
TCGA-CS-4941 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6186 TCGA-CS-6188 TCGA-DH-5140 
        7.69        20.98         6.38        17.69        23.84        19.96 
TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-6392 TCGA-DU-6403 TCGA-DU-6404 
       17.98         6.74         8.45       211.17        11.64       133.74 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-7006 TCGA-DU-7012 TCGA-DU-7013 TCGA-DU-7290 
       19.89        16.80        11.47         6.51         8.84        10.36 
TCGA-DU-7292 TCGA-FG-5963 TCGA-FG-6688 TCGA-FG-6692 TCGA-FG-7643 
        7.96        13.38         7.23         4.14         0.89 

$subtype3
TCGA-CS-4944 TCGA-CS-6290 TCGA-CS-6669 TCGA-DB-5270 TCGA-DB-5276 TCGA-DB-5278 
       10.62        17.95         7.36        97.87        52.41        50.17 
TCGA-DU-7298 TCGA-FG-6691 TCGA-HT-7467 TCGA-HT-7474 TCGA-HT-7479 TCGA-HT-7602 
       18.90         3.35         0.10         3.75         0.43        29.82 
TCGA-HT-7603 TCGA-HT-7607 TCGA-HT-7610 TCGA-HW-7489 
       23.18         3.16        56.09         4.64 

$subtype4
TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 TCGA-CS-6668 TCGA-CS-6670 TCGA-DB-5274 
       64.60         0.10         9.50         7.99         6.58        56.75 
TCGA-DB-5279 TCGA-DH-5141 TCGA-DH-5144 TCGA-DU-5849 TCGA-DU-5870 TCGA-DU-5874 
       44.52        31.82         8.02        14.53       182.33        15.12 
TCGA-DU-6393 TCGA-DU-6400 TCGA-DU-6410 TCGA-DU-7009 TCGA-DU-7018 TCGA-DU-7294 
       40.08         1.22         7.96       138.25        30.67        94.29 
TCGA-DU-7300 TCGA-DU-7302 TCGA-E1-5307 TCGA-E1-5311 TCGA-E1-5318 TCGA-E1-5319 
       62.01        60.30        57.93       134.27        78.18        95.57 
TCGA-EZ-7264 TCGA-FG-5962 TCGA-FG-5964 TCGA-FG-7634 TCGA-FG-7637 TCGA-FG-7638 
        5.26        25.87        12.39        15.35        26.37         7.66 
TCGA-HT-7468 TCGA-HT-7480 TCGA-HT-7481 TCGA-HT-7605 TCGA-HW-7486 TCGA-HW-7487 
        4.80        73.35        59.18         4.57        19.99        13.45 
TCGA-HW-7491 TCGA-HW-7495 
       28.08         0.43 

subtype1 subtype2 subtype3 subtype4 
    0.03     0.89     0.10     0.10 
subtype1 subtype2 subtype3 subtype4 
  156.23   211.17    97.87   182.33 
subtype1 subtype2 subtype3 subtype4 
  23.310   11.470   14.285   26.120 
[1] "0.0 - 156.2 (23.3)" "0.9 - 211.2 (11.5)" "0.1 - 97.9 (14.3)" 
[4] "0.1 - 182.3 (26.1)"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype4"
  [7] "subtype1" "subtype4" "subtype2" "subtype4" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype4"
 [19] "subtype3" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
 [25] "subtype3" "subtype1" "subtype3" "subtype4" "subtype1" "subtype1"
 [31] "subtype2" "subtype4" "subtype1" "subtype1" "subtype4" "subtype2"
 [37] "subtype4" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype4" "subtype1" "subtype1" "subtype4" "subtype2" "subtype4"
 [49] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
 [67] "subtype2" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
 [73] "subtype2" "subtype2" "subtype4" "subtype3" "subtype1" "subtype4"
 [79] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
 [85] "subtype1" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
 [91] "subtype4" "subtype1" "subtype4" "subtype4" "subtype2" "subtype4"
 [97] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[103] "subtype4" "subtype1" "subtype4" "subtype4" "subtype2" "subtype1"
[109] "subtype3" "subtype4" "subtype1" "subtype1" "subtype1" "subtype3"
[115] "subtype1" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
[121] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[127] "subtype1" "subtype4" "subtype1" "subtype3" "subtype1" "subtype3"
[133] "subtype4" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
[139] "subtype4" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype4"
  [7] "subtype1" "subtype4" "subtype2" "subtype4" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype4"
 [19] "subtype3" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
 [25] "subtype3" "subtype1" "subtype3" "subtype4" "subtype1" "subtype1"
 [31] "subtype2" "subtype4" "subtype1" "subtype1" "subtype4" "subtype2"
 [37] "subtype4" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype4" "subtype1" "subtype1" "subtype4" "subtype2" "subtype4"
 [49] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
 [67] "subtype2" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
 [73] "subtype2" "subtype2" "subtype4" "subtype3" "subtype1" "subtype4"
 [79] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
 [85] "subtype1" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
 [91] "subtype4" "subtype1" "subtype4" "subtype4" "subtype2" "subtype4"
 [97] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[103] "subtype4" "subtype1" "subtype4" "subtype4" "subtype2" "subtype1"
[109] "subtype3" "subtype4" "subtype1" "subtype1" "subtype1" "subtype3"
[115] "subtype1" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
[121] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[127] "subtype1" "subtype4" "subtype1" "subtype3" "subtype1" "subtype3"
[133] "subtype4" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
[139] "subtype4" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype4"
  [7] "subtype1" "subtype4" "subtype2" "subtype4" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype4"
 [19] "subtype3" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
 [25] "subtype3" "subtype1" "subtype3" "subtype4" "subtype1" "subtype1"
 [31] "subtype2" "subtype4" "subtype1" "subtype1" "subtype4" "subtype2"
 [37] "subtype4" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [43] "subtype4" "subtype1" "subtype1" "subtype4" "subtype2" "subtype4"
 [49] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
 [67] "subtype2" "subtype2" "subtype1" "subtype1" "subtype4" "subtype1"
 [73] "subtype2" "subtype2" "subtype4" "subtype3" "subtype1" "subtype4"
 [79] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
 [85] "subtype1" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
 [91] "subtype4" "subtype1" "subtype4" "subtype4" "subtype2" "subtype4"
 [97] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[103] "subtype4" "subtype1" "subtype4" "subtype4" "subtype2" "subtype1"
[109] "subtype3" "subtype4" "subtype1" "subtype1" "subtype1" "subtype3"
[115] "subtype1" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
[121] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[127] "subtype1" "subtype4" "subtype1" "subtype3" "subtype1" "subtype3"
[133] "subtype4" "subtype4" "subtype3" "subtype1" "subtype4" "subtype1"
[139] "subtype4" "subtype1"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1 22 41
  subtype2 15  8
  subtype3  6 10
  subtype4 19 19
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   22   41
  subtype2   15    8
  subtype3    6   10
  subtype4   19   19
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       22       15        6       19
  MALE         41        8       10       19
D4V4, continuous
D4V5, multiclass
D4V6, binary
          cls
clus        0  1
  subtype1 48 15
  subtype2 16  7
  subtype3  5 11
  subtype4 14 24
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   48   15
  subtype2   16    7
  subtype3    5   11
  subtype4   14   24
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        48       16        5       14
  YES       15        7       11       24
D4V7, binary
          cls
clus        0  1
  subtype1 32 31
  subtype2 12 11
  subtype3  5 11
  subtype4 21 17
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   32   31
  subtype2   12   11
  subtype3    5   11
  subtype4   21   17
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        32       12        5       21
  YES       31       11       11       17

Clustering(5) Variable = MRNASEQ_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1  4  9
  subtype2  9  8
  subtype3 10  7
subtype1 subtype2 subtype3 
      13       17       17 
subtype1 subtype2 subtype3 
       9        8        7 
$subtype1
TCGA-CS-4941 TCGA-DH-5140 TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-6392 
        7.69        19.96        17.98         6.74         8.45       211.17 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-E1-5304 
        7.00        11.64       133.74        19.89        16.80        41.13 
TCGA-FG-5963 
       13.38 

$subtype2
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-6290 TCGA-DB-5273 TCGA-DB-5280 
       43.89        15.81        10.62        17.95        58.72        13.28 
TCGA-DH-5141 TCGA-DU-5855 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-6395 TCGA-DU-6396 
       31.82         6.81        18.94        17.46        49.02        75.16 
TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6407 TCGA-E1-5302 TCGA-E1-5303 
       65.72        87.45        94.52        50.14        67.43 

$subtype3
TCGA-CS-5390 TCGA-CS-5396 TCGA-DB-5270 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5281 
       64.60         9.50        97.87        56.75        47.93        53.06 
TCGA-DU-5849 TCGA-DU-5870 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6397 
       14.53       182.33        15.12        40.08        22.42        46.06 
TCGA-DU-6400 TCGA-DU-6408 TCGA-E1-5311 TCGA-E1-5318 TCGA-FG-5964 
        1.22       114.05       134.27        78.18        12.39 

subtype1 subtype2 subtype3 
    6.74     6.81     1.22 
subtype1 subtype2 subtype3 
  211.17    94.52   182.33 
subtype1 subtype2 subtype3 
   16.80    43.89    47.93 
[1] "6.7 - 211.2 (16.8)" "6.8 - 94.5 (43.9)"  "1.2 - 182.3 (47.9)"
 [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [7] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[13] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[19] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[25] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[31] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[37] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[43] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [7] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[13] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[19] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[25] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[31] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[37] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[43] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [7] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[13] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[19] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[25] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[31] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[37] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[43] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
D5V2, continuous
D5V3, binary
          cls
clus        0  1
  subtype1  9  4
  subtype2  7 10
  subtype3  9  8
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9    4
  subtype2    7   10
  subtype3    9    8
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        9        7        9
  MALE          4       10        8
D5V4, continuous
D5V5, multiclass
D5V6, binary
          cls
clus        0  1
  subtype1 10  3
  subtype2 14  3
  subtype3  9  8
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   10    3
  subtype2   14    3
  subtype3    9    8
     clus
vv    subtype1 subtype2 subtype3
  NO        10       14        9
  YES        3        3        8
D5V7, binary
          cls
clus        0  1
  subtype1  7  6
  subtype2  8  9
  subtype3 11  6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7    6
  subtype2    8    9
  subtype3   11    6
     clus
vv    subtype1 subtype2 subtype3
  NO         7        8       11
  YES        6        9        6

Clustering(6) Variable = MRNASEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1  4  8
  subtype2 10  6
  subtype3  9 10
subtype1 subtype2 subtype3 
      12       16       19 
subtype1 subtype2 subtype3 
       8        6       10 
$subtype1
TCGA-CS-4941 TCGA-DH-5140 TCGA-DU-5847 TCGA-DU-5852 TCGA-DU-5854 TCGA-DU-6392 
        7.69        19.96        17.98         6.74         8.45       211.17 
TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 TCGA-DU-6406 TCGA-FG-5963 
        7.00        11.64       133.74        19.89        16.80        13.38 

$subtype2
TCGA-CS-5390 TCGA-CS-5396 TCGA-DB-5270 TCGA-DB-5274 TCGA-DB-5281 TCGA-DH-5141 
       64.60         9.50        97.87        56.75        53.06        31.82 
TCGA-DU-5849 TCGA-DU-5870 TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6397 
       14.53       182.33        15.12        40.08        22.42        46.06 
TCGA-DU-6400 TCGA-E1-5311 TCGA-E1-5318 TCGA-FG-5964 
        1.22       134.27        78.18        12.39 

$subtype3
TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-4944 TCGA-CS-6290 TCGA-DB-5273 TCGA-DB-5275 
       43.89        15.81        10.62        17.95        58.72        47.93 
TCGA-DB-5280 TCGA-DU-5855 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-6395 TCGA-DU-6396 
       13.28         6.81        18.94        17.46        49.02        75.16 
TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6407 TCGA-DU-6408 TCGA-E1-5302 TCGA-E1-5303 
       65.72        87.45        94.52       114.05        50.14        67.43 
TCGA-E1-5304 
       41.13 

subtype1 subtype2 subtype3 
    6.74     1.22     6.81 
subtype1 subtype2 subtype3 
  211.17   182.33   114.05 
subtype1 subtype2 subtype3 
   15.09    43.07    47.93 
[1] "6.7 - 211.2 (15.1)" "1.2 - 182.3 (43.1)" "6.8 - 114.0 (47.9)"
 [1] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [7] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[13] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[19] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[25] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[31] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[37] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[43] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [1] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [7] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[13] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[19] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[25] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[31] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[37] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[43] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [1] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [7] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[13] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[19] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[25] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[31] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[37] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[43] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
D6V2, continuous
D6V3, binary
          cls
clus        0  1
  subtype1  9  3
  subtype2  8  8
  subtype3  8 11
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9    3
  subtype2    8    8
  subtype3    8   11
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        9        8        8
  MALE          3        8       11
D6V4, continuous
D6V5, multiclass
D6V6, binary
          cls
clus        0  1
  subtype1  9  3
  subtype2  9  7
  subtype3 15  4
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9    3
  subtype2    9    7
  subtype3   15    4
     clus
vv    subtype1 subtype2 subtype3
  NO         9        9       15
  YES        3        7        4
D6V7, binary
          cls
clus        0  1
  subtype1  7  5
  subtype2 11  5
  subtype3  8 11
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7    5
  subtype2   11    5
  subtype3    8   11
     clus
vv    subtype1 subtype2 subtype3
  NO         7       11        8
  YES        5        5       11

Clustering(7) Variable = MIRSEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 10 12
  subtype2 16  9
  subtype3 14  6
subtype1 subtype2 subtype3 
      22       25       20 
subtype1 subtype2 subtype3 
      12        9        6 
$subtype1
TCGA-CS-4938 TCGA-CS-4944 TCGA-CS-6188 TCGA-CS-6290 TCGA-DU-5847 TCGA-DU-5852 
        4.70        10.62        23.84        17.95        17.98         6.74 
TCGA-DU-5854 TCGA-DU-5855 TCGA-DU-5870 TCGA-DU-5871 TCGA-DU-5872 TCGA-DU-6394 
        8.45         6.81       182.33        18.94        17.46        22.42 
TCGA-DU-6395 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6402 
       49.02        75.16        46.06        65.72        87.45         7.00 
TCGA-DU-6405 TCGA-DU-6406 TCGA-DU-6407 TCGA-DU-6408 
       19.89        16.80        94.52       114.05 

$subtype2
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-5390 TCGA-CS-5394 TCGA-CS-5396 
        7.69        43.89        15.81        64.60         0.10         9.50 
TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 TCGA-DB-5277 
       97.87        58.72        56.75        47.93        52.41        46.65 
TCGA-DB-5280 TCGA-DB-5281 TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 TCGA-DH-5143 
       13.28        53.06        19.96        31.82        30.28        14.40 
TCGA-DH-5144 TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5311 TCGA-E1-5318 
        8.02        50.14        67.43        41.13       134.27        78.18 
TCGA-E1-5322 
      130.78 

$subtype3
TCGA-CS-5393 TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6665 TCGA-DB-5278 TCGA-DB-5279 
       28.18        20.98         6.38        12.43        50.17        44.52 
TCGA-DU-5849 TCGA-DU-5851 TCGA-DU-5853 TCGA-DU-5874 TCGA-DU-6392 TCGA-DU-6393 
       14.53        17.42        13.38        15.12       211.17        40.08 
TCGA-DU-6400 TCGA-DU-6403 TCGA-DU-6404 TCGA-FG-5962 TCGA-FG-5963 TCGA-FG-5964 
        1.22        11.64       133.74        25.87        13.38        12.39 
TCGA-FG-5965 TCGA-FG-6688 
       32.19         7.23 

subtype1 subtype2 subtype3 
    4.70     0.10     1.22 
subtype1 subtype2 subtype3 
  182.33   134.27   211.17 
subtype1 subtype2 subtype3 
  19.415   46.650   16.270 
[1] "4.7 - 182.3 (19.4)" "0.1 - 134.3 (46.6)" "1.2 - 211.2 (16.3)"
 [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [7] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[19] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[31] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[37] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[49] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[67] "subtype3"
 [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [7] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[19] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[31] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[37] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[49] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[67] "subtype3"
 [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [7] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[13] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[19] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[31] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[37] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[49] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[67] "subtype3"
D7V2, continuous
D7V3, binary
          cls
clus        0  1
  subtype1 14  8
  subtype2  9 16
  subtype3 10 10
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   14    8
  subtype2    9   16
  subtype3   10   10
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       14        9       10
  MALE          8       16       10
D7V4, continuous
D7V5, multiclass
D7V6, binary
          cls
clus        0  1
  subtype1 17  5
  subtype2 17  8
  subtype3 14  6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17    5
  subtype2   17    8
  subtype3   14    6
     clus
vv    subtype1 subtype2 subtype3
  NO        17       17       14
  YES        5        8        6
D7V7, binary
          cls
clus        0  1
  subtype1  9 13
  subtype2 18  7
  subtype3 12  8
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9   13
  subtype2   18    7
  subtype3   12    8
     clus
vv    subtype1 subtype2 subtype3
  NO         9       18       12
  YES       13        7        8

Clustering(8) Variable = MIRSEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 16  9
  subtype2  7  8
  subtype3  7  6
  subtype4 10  4
subtype1 subtype2 subtype3 subtype4 
      25       15       13       14 
subtype1 subtype2 subtype3 subtype4 
       9        8        6        4 
$subtype1
TCGA-CS-4941 TCGA-CS-4942 TCGA-CS-4943 TCGA-CS-5390 TCGA-CS-5393 TCGA-CS-5394 
        7.69        43.89        15.81        64.60        28.18         0.10 
TCGA-CS-5396 TCGA-DB-5270 TCGA-DB-5273 TCGA-DB-5274 TCGA-DB-5275 TCGA-DB-5276 
        9.50        97.87        58.72        56.75        47.93        52.41 
TCGA-DB-5277 TCGA-DB-5280 TCGA-DB-5281 TCGA-DH-5140 TCGA-DH-5141 TCGA-DH-5142 
       46.65        13.28        53.06        19.96        31.82        30.28 
TCGA-DH-5143 TCGA-E1-5302 TCGA-E1-5303 TCGA-E1-5304 TCGA-E1-5311 TCGA-E1-5318 
       14.40        50.14        67.43        41.13       134.27        78.18 
TCGA-E1-5322 
      130.78 

$subtype2
TCGA-CS-5395 TCGA-CS-5397 TCGA-CS-6188 TCGA-CS-6665 TCGA-DU-5851 TCGA-DU-5852 
       20.98         6.38        23.84        12.43        17.42         6.74 
TCGA-DU-5854 TCGA-DU-6392 TCGA-DU-6402 TCGA-DU-6403 TCGA-DU-6404 TCGA-DU-6405 
        8.45       211.17         7.00        11.64       133.74        19.89 
TCGA-DU-6406 TCGA-FG-5963 TCGA-FG-6688 
       16.80        13.38         7.23 

$subtype3
TCGA-CS-4938 TCGA-CS-4944 TCGA-CS-6290 TCGA-DU-5847 TCGA-DU-5855 TCGA-DU-5871 
        4.70        10.62        17.95        17.98         6.81        18.94 
TCGA-DU-5872 TCGA-DU-6396 TCGA-DU-6397 TCGA-DU-6399 TCGA-DU-6401 TCGA-DU-6407 
       17.46        75.16        46.06        65.72        87.45        94.52 
TCGA-DU-6408 
      114.05 

$subtype4
TCGA-DB-5278 TCGA-DB-5279 TCGA-DH-5144 TCGA-DU-5849 TCGA-DU-5853 TCGA-DU-5870 
       50.17        44.52         8.02        14.53        13.38       182.33 
TCGA-DU-5874 TCGA-DU-6393 TCGA-DU-6394 TCGA-DU-6395 TCGA-DU-6400 TCGA-FG-5962 
       15.12        40.08        22.42        49.02         1.22        25.87 
TCGA-FG-5964 TCGA-FG-5965 
       12.39        32.19 

subtype1 subtype2 subtype3 subtype4 
    0.10     6.38     4.70     1.22 
subtype1 subtype2 subtype3 subtype4 
  134.27   211.17   114.05   182.33 
subtype1 subtype2 subtype3 subtype4 
  46.650   13.380   18.940   24.145 
[1] "0.1 - 134.3 (46.6)" "6.4 - 211.2 (13.4)" "4.7 - 114.0 (18.9)"
[4] "1.2 - 182.3 (24.1)"
 [1] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[13] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[19] "subtype1" "subtype1" "subtype4" "subtype4" "subtype1" "subtype1"
[25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype3"
[31] "subtype4" "subtype2" "subtype2" "subtype4" "subtype2" "subtype3"
[37] "subtype4" "subtype3" "subtype3" "subtype4" "subtype2" "subtype4"
[43] "subtype4" "subtype4" "subtype3" "subtype3" "subtype3" "subtype4"
[49] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[55] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[61] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype4"
[67] "subtype2"
 [1] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[13] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[19] "subtype1" "subtype1" "subtype4" "subtype4" "subtype1" "subtype1"
[25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype3"
[31] "subtype4" "subtype2" "subtype2" "subtype4" "subtype2" "subtype3"
[37] "subtype4" "subtype3" "subtype3" "subtype4" "subtype2" "subtype4"
[43] "subtype4" "subtype4" "subtype3" "subtype3" "subtype3" "subtype4"
[49] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[55] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[61] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype4"
[67] "subtype2"
 [1] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[13] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[19] "subtype1" "subtype1" "subtype4" "subtype4" "subtype1" "subtype1"
[25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype3"
[31] "subtype4" "subtype2" "subtype2" "subtype4" "subtype2" "subtype3"
[37] "subtype4" "subtype3" "subtype3" "subtype4" "subtype2" "subtype4"
[43] "subtype4" "subtype4" "subtype3" "subtype3" "subtype3" "subtype4"
[49] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[55] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[61] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype4"
[67] "subtype2"
D8V2, continuous
D8V3, binary
          cls
clus        0  1
  subtype1  8 17
  subtype2 11  4
  subtype3  9  4
  subtype4  5  9
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8   17
  subtype2   11    4
  subtype3    9    4
  subtype4    5    9
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE        8       11        9        5
  MALE         17        4        4        9
D8V4, continuous
D8V5, multiclass
D8V6, binary
          cls
clus        0  1
  subtype1 17  8
  subtype2 13  2
  subtype3 10  3
  subtype4  8  6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17    8
  subtype2   13    2
  subtype3   10    3
  subtype4    8    6
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        17       13       10        8
  YES        8        2        3        6
D8V7, binary
          cls
clus        0  1
  subtype1 19  6
  subtype2  9  6
  subtype3  5  8
  subtype4  6  8
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   19    6
  subtype2    9    6
  subtype3    5    8
  subtype4    6    8
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        19        9        5        6
  YES        6        6        8        8
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V7 
                   "NEOADJUVANT.THERAPY" 
> q(save="no")
