
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.73.3976/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.73.3976/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/LUAD/1929634/1.GDAC_mergedClustering.Finished/LUAD.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LUAD/1709124/1.GDAC_clinicalDataPicker.Finished/LUAD.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=1", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=294, in cluster file=354, common to both=292
[1]  10 292
[1] "MRNA_CNMF"
[1] 3
 1  2  3  4 
 5  9 12  6 
 1  2  3  4 
 5  9 12  6 
[1] "MRNA_CHIERARCHICAL"
[1] 3
 1  2  3 
 7 13 12 
 1  2  3 
 7 13 12 
[1] "CN_CNMF"
[1] 3
  1   2   3 
 94 119  74 
  1   2   3 
 94 119  74 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3  4 
52 63 53 50 
 1  2  3  4 
52 63 53 50 
[1] "RPPA_CNMF"
[1] 3
 1  2  3 
89 70 70 
 1  2  3 
89 70 70 
[1] "RPPA_CHIERARCHICAL"
[1] 3
 1  2  3  4 
22 72 82 53 
 1  2  3  4 
22 72 82 53 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3 
87 87 89 
 1  2  3 
87 87 89 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
 1  2  3  4 
43 65 59 96 
 1  2  3  4 
43 65 59 96 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
107 119  58 
  1   2   3 
107 119  58 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 19 131 134 
  1   2   3 
 19 131 134 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "TUMORSTAGE"                            
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NEOADJUVANTTHERAPY"                    
[18] "BATCHNUMBER"                           

Input Data has 18 rows and 292 columns.

[1] "Batch" "18"   
[1] "Last Follow UP"
TCGA-05-4244 TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 
          NA         1158          121          606          426           NA 
TCGA-05-4390 TCGA-05-4395 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
        1126           NA          303           NA         1431           NA 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4410 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
          NA          610           NA           90          454           NA 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
         911           NA          913           NA          791          791 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
         761          761          730          457           31          151 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
          90           NA           30           62           14          224 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
         181          264         1448         2595         1147         1491 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
         863         1073          354         1357          158           NA 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
         574          581          400          529          103          480 
TCGA-44-2664 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
         383          400           97          246          311          253 
TCGA-44-3917 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
         392          196          189          140          106          498 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
         208            9          102          302          236           95 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
         165           82         1938           NA         1110           NA 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
         298          162          153           50          557           NA 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
         531          535          418         2318           NA           NA 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
          NA         1081         1421          428          999          268 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
         896           NA         1314          457          369          395 
TCGA-49-6745 TCGA-49-6761 TCGA-49-6767 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
         150            1           NA           NA         2174         1485 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
         455          785          297         1499          245          282 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
         267         1091         2369          653          257          460 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
         285          135          373          349           NA           NA 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
          NA           NA           NA           NA         1015           NA 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 
         255         1068          970          418          701         1178 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
        1479         1374           87            2          992           24 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
          NA         1238           NA           28         1475           NA 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
          NA           NA           67           NA           NA         1826 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7227 TCGA-55-7281 
          NA         1233         2161         1170           61           18 
TCGA-55-7283 TCGA-55-7570 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
          34           NA            4           95           40           39 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7816 TCGA-55-7903 TCGA-55-7907 
          31           24           54           31           19           16 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
         197           21            3         1728          628         1189 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
        1685         1126           NA         2550            3          926 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
         507         1202          223           30           60           18 
TCGA-67-3773 TCGA-67-3774 TCGA-67-4679 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
          62           18           NA           27           21          422 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-71-6725 
         154          186          690          414          129           61 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        1599          711          911          617          467           14 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-75-5122 TCGA-75-5125 TCGA-75-5126 
          40          122           38           NA           NA           NA 
TCGA-75-5146 TCGA-75-5147 TCGA-75-6203 TCGA-75-6205 TCGA-75-6206 TCGA-75-6207 
          NA           NA           NA           NA           NA           NA 
TCGA-75-6211 TCGA-75-6212 TCGA-75-6214 TCGA-75-7025 TCGA-75-7027 TCGA-75-7030 
          NA           NA           NA           NA           NA           NA 
TCGA-75-7031 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
          NA           NA           NA           NA           NA           NA 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
        1093           NA         1201          760           NA           NA 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
          NA           NA         1220          678          214           NA 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
        6812           NA           NA           NA           NA           NA 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-80-5607 
          NA          327          881           NA          994           NA 
TCGA-80-5608 TCGA-80-5611 TCGA-83-5908 TCGA-86-6562 TCGA-86-6851 TCGA-86-7701 
          NA           NA          420           NA           NA           11 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7714 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
          27            7           NA           37           NA            1 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 
          39           35           11           NA          819          127 
TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 
          28           31          297          127           34            2 
TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
         163          963         1435         1476         1331          263 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
         181           NA           22          250 
Variable 1:'AGE':	nDistinctValues=48,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=80,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=179,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=20,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=74,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'BATCH.NUMBER':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "KARNOFSKY.PERFORMANCE.SCORE"           
 [4] "HISTOLOGICAL.TYPE"                     
 [5] "PATHOLOGY.T"                           
 [6] "PATHOLOGY.N"                           
 [7] "PATHOLOGICSPREAD(M)"                   
 [8] "TUMOR.STAGE"                           
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NEOADJUVANT.THERAPY"                   
[1] "TUMOR.?STAGE" "8"           
[1] "stage2"
vv
  1   2   3   4 
151  61  58  17 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 292 columns, 1 survival variables, and 10 non-survival variables.
AGE, nv=48, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=6, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=11, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 81 170  23  16 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 81 170  23  16 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 81 170  23  16 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 81 170  23  16 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
174  59  51   1 
[1] "table(vv)"
vv
   N0    N1 N2+N3 
  174    59    52 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2  N3 
174  59  51   1 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


   N0    N1 N2+N3 
  174    59    52 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
151  61  58  17 
[1] "table(vv)"
vv
  I  II III  IV 
151  61  58  17 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
151  61  58  17 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
151  61  58  17 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1  4  0
  subtype2  8  1
  subtype3 11  1
  subtype4  4  2
subtype1 subtype2 subtype3 subtype4 
       4        9       12        6 
subtype1 subtype2 subtype3 subtype4 
       0        1        1        2 
$subtype1
TCGA-35-4123 TCGA-44-2665 TCGA-44-3919 TCGA-55-1595 
        5.95        13.15         6.21        48.62 

$subtype2
TCGA-05-4249 TCGA-05-4250 TCGA-35-4122 TCGA-44-2656 TCGA-44-2662 TCGA-44-2668 
       38.07         3.98         7.36        19.10        15.78         8.09 
TCGA-44-3398 TCGA-44-3918 TCGA-64-1676 
        8.32         6.44        56.81 

$subtype3
TCGA-35-3615 TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2666 
        0.46        18.87        13.15        17.39         3.39         3.19 
TCGA-44-4112 TCGA-64-1680 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
        4.60        37.02         0.99         0.59         2.04         0.59 

$subtype4
TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-64-1677 TCGA-64-1678 TCGA-67-3771 
       23.05        38.73        45.17        20.65        39.09         1.97 

subtype1 subtype2 subtype3 subtype4 
    5.95     3.98     0.46     1.97 
subtype1 subtype2 subtype3 subtype4 
   48.62    56.81    37.02    45.17 
subtype1 subtype2 subtype3 subtype4 
    9.68     8.32     3.29    30.89 
[1] "6.0 - 48.6 (9.7)"  "4.0 - 56.8 (8.3)"  "0.5 - 37.0 (3.3)" 
[4] "2.0 - 45.2 (30.9)"
 [1] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[19] "subtype4" "subtype4" "subtype1" "subtype4" "subtype2" "subtype4"
[25] "subtype4" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
[31] "subtype3"
 [1] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[19] "subtype4" "subtype4" "subtype1" "subtype4" "subtype2" "subtype4"
[25] "subtype4" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
[31] "subtype3"
 [1] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [7] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[19] "subtype4" "subtype4" "subtype1" "subtype4" "subtype2" "subtype4"
[25] "subtype4" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
[31] "subtype3"
D1V2, continuous
D1V3, binary
          cls
clus       0 1
  subtype1 3 2
  subtype2 3 6
  subtype3 9 3
  subtype4 3 3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3    2
  subtype2    3    6
  subtype3    9    3
  subtype4    3    3
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE        3        3        9        3
  MALE          2        6        3        3
D1V4, continuous
[1] "Remove cluster labels:" "subtype1"               "subtype2"              
[4] "subtype4"              
clus
subtype1 subtype2 subtype4 
       1        1        1 
character(0)
D1V5, multiclass
D1V6, multiclass
D1V7, multiclass
D1V8, multiclass
    clus
vv   subtype1 subtype2 subtype3 subtype4
  M0        4        9       11        6
  M1        1        0        1        0
D1V9, multiclass
D1V10, binary
          cls
clus        0  1
  subtype1  0  5
  subtype2  0  9
  subtype3  1 11
  subtype4  0  6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0    5
  subtype2    0    9
  subtype3    1   11
  subtype4    0    6
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         0        0        1        0
  YES        5        9       11        6
D1V11, binary
          cls
clus       0 1
  subtype1 1 4
  subtype2 1 8
  subtype3 3 9
  subtype4 1 5
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1    4
  subtype2    1    8
  subtype3    3    9
  subtype4    1    5
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         1        1        3        1
  YES        4        8        9        5

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2       0  1
  subtype1  5  2
  subtype2 12  1
  subtype3 10  1
subtype1 subtype2 subtype3 
       7       13       11 
subtype1 subtype2 subtype3 
       2        1        1 
$subtype1
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-64-1677 TCGA-64-1678 
       23.05        38.73        48.62        45.17        20.65        39.09 
TCGA-67-3771 
        1.97 

$subtype2
TCGA-35-3615 TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        0.46        18.87        19.10        13.15        17.39         3.39 
TCGA-44-2666 TCGA-44-4112 TCGA-64-1680 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
        3.19         4.60        37.02         0.99         0.59         2.04 
TCGA-67-3774 
        0.59 

$subtype3
TCGA-05-4249 TCGA-05-4250 TCGA-35-4122 TCGA-35-4123 TCGA-44-2662 TCGA-44-2665 
       38.07         3.98         7.36         5.95        15.78        13.15 
TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-64-1676 
        8.09         8.32         6.44         6.21        56.81 

subtype1 subtype2 subtype3 
    1.97     0.46     3.98 
subtype1 subtype2 subtype3 
   48.62    37.02    56.81 
subtype1 subtype2 subtype3 
   38.73     3.39     8.09 
[1] "2.0 - 48.6 (38.7)" "0.5 - 37.0 (3.4)"  "4.0 - 56.8 (8.1)" 
 [1] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[13] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[25] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[31] "subtype2"
 [1] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[13] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[25] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[31] "subtype2"
 [1] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[13] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[25] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[31] "subtype2"
D2V2, continuous
D2V3, binary
          cls
clus       0 1
  subtype1 4 3
  subtype2 9 4
  subtype3 5 7
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4    3
  subtype2    9    4
  subtype3    5    7
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        4        9        5
  MALE          3        4        7
D2V4, continuous
[1] "Remove cluster labels:" "subtype1"               "subtype3"              
clus
subtype1 subtype3 
       1        2 
character(0)
D2V5, multiclass
D2V6, multiclass
D2V7, multiclass
D2V8, multiclass
    clus
vv   subtype1 subtype2 subtype3
  M0        7       12       11
  M1        0        1        1
D2V9, multiclass
D2V10, binary
          cls
clus        0  1
  subtype1  0  7
  subtype2  1 12
  subtype3  0 12
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0    7
  subtype2    1   12
  subtype3    0   12
     clus
vv    subtype1 subtype2 subtype3
  NO         0        1        0
  YES        7       12       12
D2V11, binary
          cls
clus        0  1
  subtype1  1  6
  subtype2  3 10
  subtype3  2 10
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1    6
  subtype2    3   10
  subtype3    2   10
     clus
vv    subtype1 subtype2 subtype3
  NO         1        3        2
  YES        6       10       10

Clustering(3) Variable = CN_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 52 30
  subtype2 73 33
  subtype3 47 18
subtype1 subtype2 subtype3 
      82      106       65 
subtype1 subtype2 subtype3 
      30       33       18 
$subtype1
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4420 TCGA-05-4426 TCGA-05-4427 
       47.05         8.02        20.05        29.95        26.01        26.01 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5715 TCGA-35-4123 TCGA-38-4629 TCGA-38-4631 
        4.96         2.96         2.04         5.95        28.37        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 TCGA-44-2659 TCGA-44-2662 TCGA-44-3919 
       44.61         5.19        19.10        17.39        15.78         6.21 
TCGA-44-6147 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-7662 TCGA-49-4488 
        7.76         5.42         2.70        32.45         1.64        28.57 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4512 TCGA-49-6743 TCGA-50-5045 
       12.66        46.72        14.07        29.75        12.13        71.47 
TCGA-50-5066 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5941 TCGA-50-5946 
        9.76         9.27         8.78        77.88         9.37        11.47 
TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 TCGA-53-7624 TCGA-55-1592 
        3.88        11.05        12.16        33.37        35.11        23.05 
TCGA-55-6543 TCGA-55-6712 TCGA-55-6969 TCGA-55-6979 TCGA-55-6981 TCGA-55-6985 
        0.07         0.79        40.70         7.76        45.34        40.54 
TCGA-55-7281 TCGA-55-7727 TCGA-55-7903 TCGA-55-7914 TCGA-64-1676 TCGA-64-1679 
        0.59         1.02         0.62         0.10        56.81        55.40 
TCGA-64-1681 TCGA-64-5778 TCGA-67-3770 TCGA-67-3772 TCGA-67-6215 TCGA-67-6217 
       44.38        30.44         0.99         0.59         0.89        13.87 
TCGA-69-7765 TCGA-71-6725 TCGA-73-4668 TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 
        4.24         2.01        15.35         4.01       163.10        27.16 
TCGA-78-7147 TCGA-78-7150 TCGA-78-7155 TCGA-78-7163 TCGA-78-7535 TCGA-78-7539 
       19.27        21.86        38.50       223.96        31.20        10.75 
TCGA-78-7542 TCGA-86-7711 TCGA-91-6829 TCGA-91-6847 TCGA-91-6848 TCGA-95-7039 
       10.55         0.89        41.33        26.93         4.18         1.12 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       43.76         8.65         5.95         0.59 

$subtype2
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4415 TCGA-05-4418 
       38.07        19.92        14.01         9.96         2.96         8.98 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5429 TCGA-35-3615 
       25.02        24.00        15.02         1.02         0.99         0.46 
TCGA-35-4122 TCGA-38-4626 TCGA-38-4627 TCGA-38-7271 TCGA-44-2655 TCGA-44-2657 
        7.36        85.32        37.71        26.30        18.87        13.15 
TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
        3.39        13.15         3.19         8.09        10.22         8.32 
TCGA-44-4112 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6776 
        4.60         6.84         3.35         9.93         3.12        63.72 
TCGA-44-7659 TCGA-44-7661 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
        9.80         5.03        17.59        13.74        76.21        28.11 
TCGA-49-4494 TCGA-49-4506 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       35.54        32.84        43.20        15.02        12.99         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5049 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 
        0.03        20.48        48.82        25.81        49.28         8.05 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-6590 TCGA-50-6592 TCGA-50-6595 
        8.45        15.12         4.44        42.31        25.51         6.21 
TCGA-50-6673 TCGA-53-7626 TCGA-55-6642 TCGA-55-6968 TCGA-55-6970 TCGA-55-6971 
        0.72        31.89        32.61        42.48        15.25         0.92 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6980 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        3.88         5.46         2.20        32.71        60.03        24.99 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 
       71.05        38.47         1.12         0.13         3.12         1.28 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7911 TCGA-64-1680 TCGA-64-5781 TCGA-64-5815 
        0.79         1.78         0.69        37.02        39.52         7.33 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-69-7761 TCGA-69-7763 TCGA-73-4658 
        2.04         0.59         0.69         6.12        22.68        52.57 
TCGA-73-4659 TCGA-73-4677 TCGA-78-7152 TCGA-78-7153 TCGA-78-7156 TCGA-78-7158 
       23.38         1.25        39.48        24.99        32.09         5.88 
TCGA-78-7160 TCGA-78-7162 TCGA-78-7166 TCGA-78-7537 TCGA-78-7540 TCGA-78-7633 
       22.29       104.15         8.48        53.33        28.96        32.68 
TCGA-91-6830 TCGA-91-6835 TCGA-91-6849 TCGA-93-7347 TCGA-93-7348 TCGA-97-7546 
        0.03         1.15         0.92         9.76         4.18        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7941 TCGA-99-7458 
       47.18        48.53         0.72         8.22 

$subtype3
TCGA-05-4250 TCGA-05-4390 TCGA-05-4397 TCGA-05-4417 TCGA-05-4424 TCGA-05-4432 
        3.98        37.02        24.03        14.93        30.02        25.02 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4628 TCGA-38-4630 TCGA-44-3918 TCGA-44-5643 
        8.68        47.61        49.02        35.28         6.44         3.48 
TCGA-44-5644 TCGA-44-6144 TCGA-44-6778 TCGA-44-6779 TCGA-44-7660 TCGA-44-7667 
       16.37         0.30        36.49        16.41         5.33        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-49-4507 TCGA-49-4510 TCGA-50-5051 TCGA-50-5932 
       18.87        17.46         8.81        29.46        14.96        35.87 
TCGA-50-5935 TCGA-50-5944 TCGA-50-7109 TCGA-53-7813 TCGA-55-1594 TCGA-55-1595 
       21.47        12.26         8.38        13.74        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6972 TCGA-55-7576 TCGA-55-7907 TCGA-55-7910 
       45.17         2.86        48.49         1.32         0.53         6.48 
TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-67-3771 
       20.65        39.09        83.84         0.10        16.67         1.97 
TCGA-69-7760 TCGA-69-7764 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
        5.06        13.61        29.95        20.28         0.46         1.32 
TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7154 TCGA-78-7159 TCGA-78-7161 
        5.65        20.58        35.93        19.50        40.11         7.04 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-86-7701 TCGA-86-7713 TCGA-91-6828 
       88.11        26.53         8.02         0.36         0.23         1.22 
TCGA-91-6831 TCGA-91-6836 TCGA-91-7771 TCGA-95-7043 TCGA-95-7567 
        1.28         0.36         1.02         0.07         5.36 

subtype1 subtype2 subtype3 
    0.07     0.03     0.07 
subtype1 subtype2 subtype3 
  223.96   104.15    88.11 
subtype1 subtype2 subtype3 
  12.145   13.070   14.960 
[1] "0.1 - 224.0 (12.1)" "0.0 - 104.2 (13.1)" "0.1 - 88.1 (15.0)" 
  [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [13] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [31] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [85] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [91] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [97] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[109] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[133] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[145] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[163] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[181] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[187] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[193] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[199] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[205] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[211] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[217] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[223] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[229] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[235] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[241] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[247] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[253] "subtype2"
  [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [13] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [31] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [85] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [91] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [97] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[109] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[133] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[145] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[163] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[181] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[187] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[193] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[199] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[205] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[211] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[217] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[223] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[229] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[235] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[241] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[247] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[253] "subtype2"
  [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
  [7] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [13] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [31] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [37] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [73] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [85] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
 [91] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [97] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[109] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[115] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[133] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[145] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[163] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[181] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[187] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[193] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[199] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[205] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[211] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[217] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[223] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[229] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[235] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[241] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[247] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[253] "subtype2"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1 55 39
  subtype2 65 54
  subtype3 35 39
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   55   39
  subtype2   65   54
  subtype3   35   39
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       55       65       35
  MALE         39       54       39
D3V4, continuous
D3V5, multiclass
D3V6, multiclass
D3V7, multiclass
D3V8, multiclass
D3V9, multiclass
D3V10, binary
          cls
clus         0   1
  subtype1   6  88
  subtype2   6 113
  subtype3   7  67
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6   88
  subtype2    6  113
  subtype3    7   67
     clus
vv    subtype1 subtype2 subtype3
  NO         6        6        7
  YES       88      113       67
D3V11, binary
          cls
clus         0   1
  subtype1  14  80
  subtype2  18 101
  subtype3  12  62
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   14   80
  subtype2   18  101
  subtype3   12   62
     clus
vv    subtype1 subtype2 subtype3
  NO        14       18       12
  YES       80      101       62

Clustering(4) Variable = METHLYATION_CNMF
D4V1, survival
          sevent
clus2       0  1
  subtype1 32 12
  subtype2 32 22
  subtype3 36 10
  subtype4 30 16
subtype1 subtype2 subtype3 subtype4 
      44       54       46       46 
subtype1 subtype2 subtype3 subtype4 
      12       22       10       16 
$subtype1
TCGA-05-4384 TCGA-05-5423 TCGA-05-5715 TCGA-38-6178 TCGA-44-5645 TCGA-44-6146 
       14.01         4.96         2.04         5.19         6.84         9.93 
TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-7659 TCGA-49-4512 TCGA-50-5044 
        3.12         2.70        63.72         9.80        29.75        20.48 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5942 TCGA-50-5944 TCGA-50-6593 TCGA-50-6594 
       35.87        21.47         4.44        12.26        11.05        12.16 
TCGA-53-7626 TCGA-55-6543 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       31.89         0.07        60.03        24.99        40.54        71.05 
TCGA-55-7573 TCGA-55-7725 TCGA-64-5778 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.13         1.28        30.44         0.89         0.69        13.87 
TCGA-69-7760 TCGA-69-7763 TCGA-78-7143 TCGA-78-7158 TCGA-78-7162 TCGA-78-7163 
        5.06        22.68       163.10         5.88       104.15       223.96 
TCGA-78-7537 TCGA-91-6849 TCGA-93-7348 TCGA-97-7546 TCGA-97-7547 TCGA-97-7553 
       53.33         0.92         4.18        31.66        47.18        43.76 
TCGA-97-7938 TCGA-99-7458 
        0.59         8.22 

$subtype2
TCGA-05-4390 TCGA-05-4396 TCGA-05-4415 TCGA-05-5425 TCGA-35-5375 TCGA-38-4631 
       37.02         9.96         2.96         2.96         8.68        11.64 
TCGA-44-5644 TCGA-44-6144 TCGA-44-7660 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
       16.37         0.30         5.33        18.31        18.87        17.46 
TCGA-44-7671 TCGA-49-6742 TCGA-50-5051 TCGA-50-5931 TCGA-50-5936 TCGA-50-5946 
       17.59        15.02        14.96         8.78         8.45        11.47 
TCGA-50-6591 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7813 TCGA-55-5899 
        3.88         0.72         8.38        35.11        13.74         2.86 
TCGA-55-6642 TCGA-55-6968 TCGA-55-6970 TCGA-55-6972 TCGA-55-7910 TCGA-64-1681 
       32.61        42.48        15.25        48.49         6.48        44.38 
TCGA-64-5774 TCGA-64-5779 TCGA-69-7764 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 
       83.84        16.67        13.61         5.65        20.58        35.93 
TCGA-78-7150 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7159 TCGA-78-7161 
       21.86        19.50        38.50        32.09        40.11         7.04 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7539 TCGA-78-7633 
        8.48        88.11        26.53         8.02        10.75        32.68 
TCGA-86-7713 TCGA-91-6829 TCGA-91-6831 TCGA-91-6847 TCGA-91-7771 TCGA-95-7043 
        0.23        41.33         1.28        26.93         1.02         0.07 

$subtype3
TCGA-05-4405 TCGA-05-4417 TCGA-05-4427 TCGA-05-4433 TCGA-05-5429 TCGA-38-4632 
       20.05        14.93        26.01        24.00         0.99        44.61 
TCGA-44-6147 TCGA-44-7662 TCGA-44-7672 TCGA-49-4488 TCGA-49-6745 TCGA-49-6761 
        7.76         1.64        13.74        28.57         4.93         0.03 
TCGA-50-5933 TCGA-50-6597 TCGA-55-6712 TCGA-55-6982 TCGA-55-7227 TCGA-55-7281 
       77.88        33.37         0.79        32.71         2.01         0.59 
TCGA-55-7283 TCGA-55-7576 TCGA-55-7727 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.12         1.32         1.02         1.78         0.62         0.53 
TCGA-55-7911 TCGA-55-7914 TCGA-64-5775 TCGA-64-5815 TCGA-69-7765 TCGA-71-6725 
        0.69         0.10         0.10         7.33         4.24         2.01 
TCGA-73-4658 TCGA-73-4676 TCGA-78-7145 TCGA-78-7147 TCGA-78-7152 TCGA-78-7153 
       52.57         4.01        27.16        19.27        39.48        24.99 
TCGA-78-7535 TCGA-78-7540 TCGA-78-7542 TCGA-86-7701 TCGA-91-6828 TCGA-91-6836 
       31.20        28.96        10.55         0.36         1.22         0.36 
TCGA-95-7039 TCGA-95-7567 TCGA-97-7554 TCGA-97-7937 
        1.12         5.36         8.65         5.95 

$subtype4
TCGA-05-4424 TCGA-05-5420 TCGA-38-7271 TCGA-44-5643 TCGA-44-6145 TCGA-44-6774 
       30.02         1.02        26.30         3.48         3.35         5.42 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7661 TCGA-49-4487 TCGA-49-4490 
       32.45        36.49        16.41         5.03        28.11        12.66 
TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 
       43.20        12.13        12.99        71.47        48.82        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5939 TCGA-50-5941 
        9.76        49.28         8.05         9.27        15.12         9.37 
TCGA-50-6590 TCGA-50-6592 TCGA-50-6595 TCGA-55-6969 TCGA-55-6971 TCGA-55-6975 
       42.31        25.51         6.21        40.70         0.92         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6987 TCGA-55-7574 
        5.46         7.76         2.20        45.34        38.47         3.12 
TCGA-55-7816 TCGA-64-1679 TCGA-64-5781 TCGA-69-7761 TCGA-78-7160 TCGA-86-7711 
        1.02        55.40        39.52         6.12        22.29         0.89 
TCGA-91-6830 TCGA-91-6835 TCGA-91-6848 TCGA-97-7552 
        0.03         1.15         4.18        48.53 

subtype1 subtype2 subtype3 subtype4 
    0.07     0.07     0.03     0.03 
subtype1 subtype2 subtype3 subtype4 
  223.96    88.11    77.88    71.47 
subtype1 subtype2 subtype3 subtype4 
  12.210   14.990    5.145   12.395 
[1] "0.1 - 224.0 (12.2)" "0.1 - 88.1 (15.0)"  "0.0 - 77.9 (5.1)"  
[4] "0.0 - 71.5 (12.4)" 
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
  [7] "subtype4" "subtype3" "subtype3" "subtype4" "subtype1" "subtype2"
 [13] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [19] "subtype4" "subtype4" "subtype2" "subtype1" "subtype2" "subtype4"
 [25] "subtype1" "subtype3" "subtype1" "subtype4" "subtype1" "subtype1"
 [31] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype4"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype4" "subtype3" "subtype4" "subtype1" "subtype4" "subtype2"
 [49] "subtype4" "subtype4" "subtype3" "subtype3" "subtype1" "subtype4"
 [55] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
 [61] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [67] "subtype4" "subtype4" "subtype1" "subtype1" "subtype2" "subtype4"
 [73] "subtype2" "subtype4" "subtype1" "subtype1" "subtype4" "subtype3"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype3" "subtype2" "subtype4" "subtype2"
 [91] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
 [97] "subtype4" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[103] "subtype4" "subtype3" "subtype3" "subtype3" "subtype1" "subtype4"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype4" "subtype3"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype4" "subtype2"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype3"
[127] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
[133] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[151] "subtype2" "subtype4" "subtype2" "subtype1" "subtype1" "subtype2"
[157] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[163] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype2"
[169] "subtype3" "subtype2" "subtype4" "subtype2" "subtype4" "subtype3"
[175] "subtype2" "subtype4" "subtype1" "subtype2" "subtype1" "subtype3"
[181] "subtype2" "subtype3" "subtype1" "subtype1" "subtype4" "subtype1"
[187] "subtype3" "subtype3" "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
  [7] "subtype4" "subtype3" "subtype3" "subtype4" "subtype1" "subtype2"
 [13] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [19] "subtype4" "subtype4" "subtype2" "subtype1" "subtype2" "subtype4"
 [25] "subtype1" "subtype3" "subtype1" "subtype4" "subtype1" "subtype1"
 [31] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype4"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype4" "subtype3" "subtype4" "subtype1" "subtype4" "subtype2"
 [49] "subtype4" "subtype4" "subtype3" "subtype3" "subtype1" "subtype4"
 [55] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
 [61] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [67] "subtype4" "subtype4" "subtype1" "subtype1" "subtype2" "subtype4"
 [73] "subtype2" "subtype4" "subtype1" "subtype1" "subtype4" "subtype3"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype3" "subtype2" "subtype4" "subtype2"
 [91] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
 [97] "subtype4" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[103] "subtype4" "subtype3" "subtype3" "subtype3" "subtype1" "subtype4"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype4" "subtype3"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype4" "subtype2"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype3"
[127] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
[133] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[151] "subtype2" "subtype4" "subtype2" "subtype1" "subtype1" "subtype2"
[157] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[163] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype2"
[169] "subtype3" "subtype2" "subtype4" "subtype2" "subtype4" "subtype3"
[175] "subtype2" "subtype4" "subtype1" "subtype2" "subtype1" "subtype3"
[181] "subtype2" "subtype3" "subtype1" "subtype1" "subtype4" "subtype1"
[187] "subtype3" "subtype3" "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
  [7] "subtype4" "subtype3" "subtype3" "subtype4" "subtype1" "subtype2"
 [13] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [19] "subtype4" "subtype4" "subtype2" "subtype1" "subtype2" "subtype4"
 [25] "subtype1" "subtype3" "subtype1" "subtype4" "subtype1" "subtype1"
 [31] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype4"
 [37] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [43] "subtype4" "subtype3" "subtype4" "subtype1" "subtype4" "subtype2"
 [49] "subtype4" "subtype4" "subtype3" "subtype3" "subtype1" "subtype4"
 [55] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
 [61] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [67] "subtype4" "subtype4" "subtype1" "subtype1" "subtype2" "subtype4"
 [73] "subtype2" "subtype4" "subtype1" "subtype1" "subtype4" "subtype3"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype3" "subtype2" "subtype4" "subtype2"
 [91] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
 [97] "subtype4" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[103] "subtype4" "subtype3" "subtype3" "subtype3" "subtype1" "subtype4"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype4" "subtype3"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype4" "subtype2"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype3"
[127] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
[133] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[139] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[145] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[151] "subtype2" "subtype4" "subtype2" "subtype1" "subtype1" "subtype2"
[157] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[163] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype2"
[169] "subtype3" "subtype2" "subtype4" "subtype2" "subtype4" "subtype3"
[175] "subtype2" "subtype4" "subtype1" "subtype2" "subtype1" "subtype3"
[181] "subtype2" "subtype3" "subtype1" "subtype1" "subtype4" "subtype1"
[187] "subtype3" "subtype3" "subtype1" "subtype1"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1 35 17
  subtype2 26 37
  subtype3 25 28
  subtype4 30 20
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   35   17
  subtype2   26   37
  subtype3   25   28
  subtype4   30   20
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       35       26       25       30
  MALE         17       37       28       20
D4V4, continuous
[1] "Remove cluster labels:" "subtype4"              
clus
subtype1 subtype2 subtype3 subtype4 
       7        4        5        2 
 [1] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [7] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[13] "subtype1" "subtype1" "subtype1" "subtype1"
D4V5, multiclass
D4V6, multiclass
D4V7, multiclass
D4V8, multiclass
D4V9, multiclass
D4V10, binary
          cls
clus        0  1
  subtype1  2 50
  subtype2  3 60
  subtype3  2 51
  subtype4  8 42
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2   50
  subtype2    3   60
  subtype3    2   51
  subtype4    8   42
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         2        3        2        8
  YES       50       60       51       42
D4V11, binary
          cls
clus        0  1
  subtype1 11 41
  subtype2  6 57
  subtype3  7 46
  subtype4  8 42
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   11   41
  subtype2    6   57
  subtype3    7   46
  subtype4    8   42
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        11        6        7        8
  YES       41       57       46       42

Clustering(5) Variable = RPPA_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 47 27
  subtype2 50 17
  subtype3 44 22
subtype1 subtype2 subtype3 
      74       67       66 
subtype1 subtype2 subtype3 
      27       17       22 
$subtype1
TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
        3.98        14.01         9.96        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4417 TCGA-05-4430 TCGA-05-4434 TCGA-05-5423 TCGA-05-5429 
       20.05        14.93        25.02        15.02         4.96         0.99 
TCGA-38-6178 TCGA-44-2656 TCGA-44-2661 TCGA-44-2664 TCGA-44-2665 TCGA-44-3918 
        5.19        19.10         3.39        12.59        13.15         6.44 
TCGA-44-3919 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6775 
        6.21         6.84         3.35         9.93         7.76         2.70 
TCGA-44-6777 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4512 
       32.45        28.57        35.54        46.72        14.07        29.75 
TCGA-49-6743 TCGA-49-6745 TCGA-50-5045 TCGA-50-5049 TCGA-50-5066 TCGA-50-5068 
       12.13         4.93        71.47        48.82         9.76        49.28 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 
        8.45        15.12         9.37         4.44        12.26        42.31 
TCGA-50-6593 TCGA-50-6597 TCGA-50-6673 TCGA-55-1592 TCGA-55-1596 TCGA-55-6543 
       11.05        33.37         0.72        23.05        45.17         0.07 
TCGA-55-6712 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-7573 TCGA-55-7911 
        0.79         7.76        45.34        32.71         0.13         0.69 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5778 TCGA-67-6215 TCGA-67-6216 
       55.40        37.02        44.38        30.44         0.89         0.69 
TCGA-67-6217 TCGA-69-7760 TCGA-71-6725 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 
       13.87         5.06         2.01         1.32         4.01       163.10 
TCGA-78-7145 TCGA-78-7535 TCGA-83-5908 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
       27.16        31.20        13.81         1.22        41.33         0.03 
TCGA-91-6835 TCGA-95-7039 
        1.15         1.12 

$subtype2
TCGA-05-4249 TCGA-05-4426 TCGA-05-5420 TCGA-05-5425 TCGA-35-3615 TCGA-38-4626 
       38.07        26.01         1.02         2.96         0.46        85.32 
TCGA-38-4627 TCGA-44-2657 TCGA-44-3396 TCGA-44-3398 TCGA-44-6774 TCGA-44-6776 
       37.71        13.15        10.22         8.32         5.42        63.72 
TCGA-44-7659 TCGA-44-7661 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 
        9.80         5.03        17.46        17.59        13.74        76.21 
TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-50-5051 TCGA-50-5930 
       29.46        43.20        15.02        12.99        14.96         9.27 
TCGA-50-5932 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-6970 TCGA-55-7574 
       35.87         8.38        31.89        13.74        15.25         3.12 
TCGA-55-7728 TCGA-55-7815 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        0.79         1.78         6.12        22.68        13.61         4.24 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4670 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
       52.57        23.38         0.46        19.27        20.58        35.93 
TCGA-78-7152 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       39.48        32.09         5.88        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
      223.96         8.48        88.11        53.33        10.75        28.96 
TCGA-78-7633 TCGA-86-7713 TCGA-91-6849 TCGA-91-7771 TCGA-93-7348 TCGA-97-7546 
       32.68         0.23         0.92         1.02         4.18        31.66 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       48.53        43.76         8.65         5.95         0.59         0.72 
TCGA-99-7458 
        8.22 

$subtype3
TCGA-05-4418 TCGA-05-4420 TCGA-05-4427 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 
        8.98        29.95        26.01         2.04         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4629 TCGA-44-2668 TCGA-44-3917 TCGA-44-4112 
        8.68        47.61        28.37         8.09        12.89         4.60 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6148 TCGA-44-6778 TCGA-44-6779 
        3.48        16.37         0.30         3.12        36.49        16.41 
TCGA-44-7660 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-49-4487 TCGA-49-4506 
        5.33         1.64        18.31        18.87        28.11        32.84 
TCGA-49-4507 TCGA-49-6761 TCGA-50-5044 TCGA-50-5072 TCGA-50-5931 TCGA-50-5933 
        8.81         0.03        20.48         8.05         8.78        77.88 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-53-7624 
       11.47         3.88        25.51        12.16         6.21        35.11 
TCGA-55-1594 TCGA-55-5899 TCGA-55-6969 TCGA-55-6971 TCGA-55-6978 TCGA-55-7910 
       38.73         2.86        40.70         0.92         5.46         6.48 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 
       56.81        20.65        39.09        83.84        16.67        39.52 
TCGA-64-5815 TCGA-67-3771 TCGA-78-7146 TCGA-78-7150 TCGA-78-7153 TCGA-78-7154 
        7.33         1.97         5.65        21.86        24.99        19.50 
TCGA-78-7155 TCGA-78-7159 TCGA-78-7536 TCGA-78-7542 TCGA-86-7701 TCGA-86-7711 
       38.50        40.11         8.02        10.55         0.36         0.89 
TCGA-91-6831 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-95-7043 TCGA-95-7567 
        1.28         0.36        26.93         4.18         0.07         5.36 

subtype1 subtype2 subtype3 
    0.03     0.23     0.03 
subtype1 subtype2 subtype3 
  163.10   223.96    83.84 
subtype1 subtype2 subtype3 
  12.195   13.740    9.765 
[1] "0.0 - 163.1 (12.2)" "0.2 - 224.0 (13.7)" "0.0 - 83.8 (9.8)"  
  [1] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [73] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[109] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[133] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[181] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[187] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[193] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2"
  [1] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [73] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[109] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[133] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[181] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[187] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[193] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2"
  [1] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [73] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[109] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[133] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[145] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[181] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[187] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[193] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2"
D5V2, continuous
D5V3, binary
          cls
clus        0  1
  subtype1 55 34
  subtype2 37 33
  subtype3 34 36
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   55   34
  subtype2   37   33
  subtype3   34   36
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       55       37       34
  MALE         34       33       36
D5V4, continuous
D5V5, multiclass
D5V6, multiclass
D5V7, multiclass
D5V8, multiclass
D5V9, multiclass
D5V10, binary
          cls
clus        0  1
  subtype1  6 83
  subtype2  4 66
  subtype3  5 65
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6   83
  subtype2    4   66
  subtype3    5   65
     clus
vv    subtype1 subtype2 subtype3
  NO         6        4        5
  YES       83       66       65
D5V11, binary
          cls
clus        0  1
  subtype1 15 74
  subtype2 15 55
  subtype3  7 63
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   74
  subtype2   15   55
  subtype3    7   63
     clus
vv    subtype1 subtype2 subtype3
  NO        15       15        7
  YES       74       55       63

Clustering(6) Variable = RPPA_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 14  4
  subtype2 46 22
  subtype3 43 27
  subtype4 38 13
subtype1 subtype2 subtype3 subtype4 
      18       68       70       51 
subtype1 subtype2 subtype3 subtype4 
       4       22       27       13 
$subtype1
TCGA-05-4405 TCGA-05-5420 TCGA-44-6145 TCGA-44-6776 TCGA-49-4505 TCGA-50-5044 
       20.05         1.02         3.35        63.72        14.07        20.48 
TCGA-50-6673 TCGA-55-6970 TCGA-55-7573 TCGA-64-5778 TCGA-78-7152 TCGA-78-7160 
        0.72        15.25         0.13        30.44        39.48        22.29 
TCGA-91-6830 TCGA-91-6835 TCGA-91-7771 TCGA-97-7937 TCGA-97-7941 TCGA-99-7458 
        0.03         1.15         1.02         5.95         0.72         8.22 

$subtype2
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4427 TCGA-05-5715 TCGA-35-4122 
       14.93         8.98        29.95        26.01         2.04         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4629 TCGA-44-2668 TCGA-44-3917 
        5.95         8.68        47.61        28.37         8.09        12.89 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6148 TCGA-44-6774 
        4.60         3.48        16.37         0.30         3.12         5.42 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7660 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
       36.49        16.41         5.33         1.64        18.31        18.87 
TCGA-44-7670 TCGA-49-4487 TCGA-49-4506 TCGA-49-4507 TCGA-49-4514 TCGA-49-6743 
       17.46        28.11        32.84         8.81        43.20        12.13 
TCGA-49-6761 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5946 
        0.03         8.05         9.27         8.78        77.88        11.47 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-7109 TCGA-53-7624 TCGA-53-7813 
       25.51        12.16         6.21         8.38        35.11        13.74 
TCGA-55-5899 TCGA-55-6971 TCGA-55-6978 TCGA-55-7815 TCGA-55-7910 TCGA-64-1677 
        2.86         0.92         5.46         1.78         6.48        20.65 
TCGA-64-1678 TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 TCGA-69-7760 
       39.09        83.84        16.67        39.52         1.97         5.06 
TCGA-69-7765 TCGA-78-7146 TCGA-78-7150 TCGA-78-7154 TCGA-78-7155 TCGA-78-7159 
        4.24         5.65        21.86        19.50        38.50        40.11 
TCGA-78-7166 TCGA-78-7536 TCGA-78-7542 TCGA-86-7701 TCGA-86-7711 TCGA-91-6831 
        8.48         8.02        10.55         0.36         0.89         1.28 
TCGA-91-6836 TCGA-95-7043 
        0.36         0.07 

$subtype3
TCGA-05-4249 TCGA-05-4250 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4430 
       38.07         3.98        24.03        47.05         8.02        25.02 
TCGA-05-4434 TCGA-05-5423 TCGA-38-4627 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 
       15.02         4.96        37.71         5.19        19.10        13.15 
TCGA-44-2661 TCGA-44-2664 TCGA-44-2665 TCGA-44-3918 TCGA-44-3919 TCGA-44-5645 
        3.39        12.59        13.15         6.44         6.21         6.84 
TCGA-44-6147 TCGA-44-6775 TCGA-44-6777 TCGA-49-4488 TCGA-49-4501 TCGA-49-4512 
        7.76         2.70        32.45        28.57        46.72        29.75 
TCGA-49-6745 TCGA-50-5045 TCGA-50-5049 TCGA-50-5066 TCGA-50-5068 TCGA-50-5936 
        4.93        71.47        48.82         9.76        49.28         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 
       15.12         9.37         4.44        12.26        42.31         3.88 
TCGA-50-6593 TCGA-50-6597 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-6712 
       11.05        33.37        23.05        38.73        45.17         0.79 
TCGA-55-6969 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-7911 TCGA-64-1676 
       40.70         7.76        45.34        32.71         0.69        56.81 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5815 TCGA-67-6215 TCGA-67-6216 
       55.40        37.02        44.38         7.33         0.89         0.69 
TCGA-67-6217 TCGA-71-6725 TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 
       13.87         2.01         4.01       163.10        27.16        19.27 
TCGA-78-7158 TCGA-78-7535 TCGA-78-7539 TCGA-83-5908 TCGA-91-6828 TCGA-91-6829 
        5.88        31.20        10.75        13.81         1.22        41.33 
TCGA-91-6847 TCGA-91-6848 TCGA-95-7039 TCGA-95-7567 
       26.93         4.18         1.12         5.36 

$subtype4
TCGA-05-4384 TCGA-05-4396 TCGA-05-4426 TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 
       14.01         9.96        26.01         2.96         0.99         0.46 
TCGA-38-4626 TCGA-44-3396 TCGA-44-3398 TCGA-44-6146 TCGA-44-7659 TCGA-44-7661 
       85.32        10.22         8.32         9.93         9.80         5.03 
TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4494 TCGA-49-4510 TCGA-49-6742 
       17.59        13.74        76.21        35.54        29.46        15.02 
TCGA-49-6744 TCGA-50-5051 TCGA-50-5932 TCGA-53-7626 TCGA-55-6543 TCGA-55-7574 
       12.99        14.96        35.87        31.89         0.07         3.12 
TCGA-55-7728 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-73-4658 TCGA-73-4659 
        0.79         6.12        22.68        13.61        52.57        23.38 
TCGA-73-4670 TCGA-73-4675 TCGA-78-7148 TCGA-78-7149 TCGA-78-7153 TCGA-78-7156 
        0.46         1.32        20.58        35.93        24.99        32.09 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7167 TCGA-78-7537 TCGA-78-7540 
        7.04       104.15       223.96        88.11        53.33        28.96 
TCGA-78-7633 TCGA-86-7713 TCGA-91-6849 TCGA-93-7348 TCGA-97-7546 TCGA-97-7552 
       32.68         0.23         0.92         4.18        31.66        48.53 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 
       43.76         8.65         0.59 

subtype1 subtype2 subtype3 subtype4 
    0.03     0.03     0.69     0.07 
subtype1 subtype2 subtype3 subtype4 
   63.72    83.84   163.10   223.96 
subtype1 subtype2 subtype3 subtype4 
   7.085    8.895   13.480   14.960 
[1] "0.0 - 63.7 (7.1)"   "0.0 - 83.8 (8.9)"   "0.7 - 163.1 (13.5)"
[4] "0.1 - 224.0 (15.0)"
  [1] "subtype3" "subtype3" "subtype4" "subtype4" "subtype3" "subtype3"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
 [13] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype4"
 [19] "subtype4" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype4" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
 [37] "subtype4" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype2" "subtype1" "subtype4" "subtype3"
 [49] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [55] "subtype2" "subtype4" "subtype2" "subtype4" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
 [67] "subtype3" "subtype4" "subtype3" "subtype1" "subtype2" "subtype2"
 [73] "subtype4" "subtype3" "subtype2" "subtype4" "subtype2" "subtype4"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype4"
 [85] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype4"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[103] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype4"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
[115] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype1" "subtype4" "subtype4" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[145] "subtype4" "subtype4" "subtype4" "subtype2" "subtype3" "subtype4"
[151] "subtype4" "subtype4" "subtype4" "subtype3" "subtype3" "subtype3"
[157] "subtype2" "subtype3" "subtype4" "subtype4" "subtype2" "subtype1"
[163] "subtype4" "subtype2" "subtype2" "subtype4" "subtype3" "subtype2"
[169] "subtype1" "subtype4" "subtype4" "subtype4" "subtype2" "subtype4"
[175] "subtype3" "subtype2" "subtype4" "subtype3" "subtype4" "subtype2"
[181] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype3"
[187] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[193] "subtype3" "subtype4" "subtype1" "subtype4" "subtype3" "subtype2"
[199] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[205] "subtype4" "subtype1" "subtype1"
  [1] "subtype3" "subtype3" "subtype4" "subtype4" "subtype3" "subtype3"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
 [13] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype4"
 [19] "subtype4" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype4" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
 [37] "subtype4" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype2" "subtype1" "subtype4" "subtype3"
 [49] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [55] "subtype2" "subtype4" "subtype2" "subtype4" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
 [67] "subtype3" "subtype4" "subtype3" "subtype1" "subtype2" "subtype2"
 [73] "subtype4" "subtype3" "subtype2" "subtype4" "subtype2" "subtype4"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype4"
 [85] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype4"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[103] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype4"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
[115] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype1" "subtype4" "subtype4" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[145] "subtype4" "subtype4" "subtype4" "subtype2" "subtype3" "subtype4"
[151] "subtype4" "subtype4" "subtype4" "subtype3" "subtype3" "subtype3"
[157] "subtype2" "subtype3" "subtype4" "subtype4" "subtype2" "subtype1"
[163] "subtype4" "subtype2" "subtype2" "subtype4" "subtype3" "subtype2"
[169] "subtype1" "subtype4" "subtype4" "subtype4" "subtype2" "subtype4"
[175] "subtype3" "subtype2" "subtype4" "subtype3" "subtype4" "subtype2"
[181] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype3"
[187] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[193] "subtype3" "subtype4" "subtype1" "subtype4" "subtype3" "subtype2"
[199] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[205] "subtype4" "subtype1" "subtype1"
  [1] "subtype3" "subtype3" "subtype4" "subtype4" "subtype3" "subtype3"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
 [13] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype4"
 [19] "subtype4" "subtype2" "subtype4" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype4" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
 [37] "subtype4" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype2" "subtype1" "subtype4" "subtype3"
 [49] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [55] "subtype2" "subtype4" "subtype2" "subtype4" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
 [67] "subtype3" "subtype4" "subtype3" "subtype1" "subtype2" "subtype2"
 [73] "subtype4" "subtype3" "subtype2" "subtype4" "subtype2" "subtype4"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype4"
 [85] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype4"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[103] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype4"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
[115] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype1" "subtype4" "subtype4" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[145] "subtype4" "subtype4" "subtype4" "subtype2" "subtype3" "subtype4"
[151] "subtype4" "subtype4" "subtype4" "subtype3" "subtype3" "subtype3"
[157] "subtype2" "subtype3" "subtype4" "subtype4" "subtype2" "subtype1"
[163] "subtype4" "subtype2" "subtype2" "subtype4" "subtype3" "subtype2"
[169] "subtype1" "subtype4" "subtype4" "subtype4" "subtype2" "subtype4"
[175] "subtype3" "subtype2" "subtype4" "subtype3" "subtype4" "subtype2"
[181] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype3"
[187] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[193] "subtype3" "subtype4" "subtype1" "subtype4" "subtype3" "subtype2"
[199] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[205] "subtype4" "subtype1" "subtype1"
D6V2, continuous
D6V3, binary
          cls
clus        0  1
  subtype1 14  8
  subtype2 36 36
  subtype3 51 31
  subtype4 25 28
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   14    8
  subtype2   36   36
  subtype3   51   31
  subtype4   25   28
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       14       36       51       25
  MALE          8       36       31       28
D6V4, continuous
D6V5, multiclass
D6V6, multiclass
D6V7, multiclass
D6V8, multiclass
D6V9, multiclass
D6V10, binary
          cls
clus        0  1
  subtype1  0 22
  subtype2  7 65
  subtype3  6 76
  subtype4  2 51
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   22
  subtype2    7   65
  subtype3    6   76
  subtype4    2   51
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         0        7        6        2
  YES       22       65       76       51
D6V11, binary
          cls
clus        0  1
  subtype1  5 17
  subtype2  9 63
  subtype3 14 68
  subtype4  9 44
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   17
  subtype2    9   63
  subtype3   14   68
  subtype4    9   44
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         5        9       14        9
  YES       17       63       68       44

Clustering(7) Variable = MRNASEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 55 20
  subtype2 48 28
  subtype3 49 30
subtype1 subtype2 subtype3 
      75       76       79 
subtype1 subtype2 subtype3 
      20       28       30 
$subtype1
TCGA-05-4249 TCGA-05-4384 TCGA-05-4402 TCGA-05-4430 TCGA-05-4434 TCGA-05-5423 
       38.07        14.01         8.02        25.02        15.02         4.96 
TCGA-05-5715 TCGA-35-3615 TCGA-38-4626 TCGA-38-7271 TCGA-44-2655 TCGA-44-2657 
        2.04         0.46        85.32        26.30        18.87        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2666 TCGA-44-3919 TCGA-44-5645 TCGA-44-6147 
       17.39         3.39         3.19         6.21         6.84         7.76 
TCGA-44-6148 TCGA-44-6776 TCGA-44-7659 TCGA-44-7671 TCGA-49-4486 TCGA-49-4501 
        3.12        63.72         9.80        17.59        76.21        46.72 
TCGA-49-4510 TCGA-49-4512 TCGA-50-5055 TCGA-50-5068 TCGA-50-5932 TCGA-50-5935 
       29.46        29.75        25.81        49.28        35.87        21.47 
TCGA-50-5942 TCGA-50-5944 TCGA-50-6593 TCGA-50-6597 TCGA-50-6673 TCGA-53-7626 
        4.44        12.26        11.05        33.37         0.72        31.89 
TCGA-55-6543 TCGA-55-6983 TCGA-55-6985 TCGA-55-6986 TCGA-55-7227 TCGA-55-7283 
        0.07        60.03        40.54        71.05         2.01         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-64-1680 TCGA-64-1681 TCGA-64-5778 TCGA-67-3770 
        0.13         3.12        37.02        44.38        30.44         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
        0.59         2.04         0.59         0.89         0.69        13.87 
TCGA-71-6725 TCGA-73-4662 TCGA-73-4675 TCGA-73-4677 TCGA-78-7143 TCGA-78-7147 
        2.01        29.95         1.32         1.25       163.10        19.27 
TCGA-78-7152 TCGA-78-7158 TCGA-78-7162 TCGA-78-7163 TCGA-78-7167 TCGA-78-7539 
       39.48         5.88       104.15       223.96        88.11        10.75 
TCGA-78-7540 TCGA-91-6835 TCGA-91-6849 TCGA-93-7348 TCGA-97-7546 TCGA-97-7547 
       28.96         1.15         0.92         4.18        31.66        47.18 
TCGA-97-7552 TCGA-97-7553 TCGA-99-7458 
       48.53        43.76         8.22 

$subtype2
TCGA-05-4250 TCGA-05-4382 TCGA-05-4398 TCGA-05-4405 TCGA-05-4426 TCGA-05-4427 
        3.98        19.92        47.05        20.05        26.01        26.01 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        7.36         5.95        47.61        37.71        49.02        28.37 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 TCGA-44-2662 TCGA-44-2665 TCGA-44-2668 
       44.61         5.19        19.10        15.78        13.15         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 TCGA-44-6774 TCGA-44-6775 
       10.22         8.32         6.44         4.60         5.42         2.70 
TCGA-44-6777 TCGA-44-6779 TCGA-44-7661 TCGA-44-7662 TCGA-44-7672 TCGA-49-4488 
       32.45        16.41         5.03         1.64        13.74        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       12.66        35.54        14.07        12.99         4.93         0.03 
TCGA-50-5044 TCGA-50-5049 TCGA-50-5066 TCGA-50-5933 TCGA-50-5941 TCGA-50-5946 
       20.48        48.82         9.76        77.88         9.37        11.47 
TCGA-50-6590 TCGA-50-6594 TCGA-50-6595 TCGA-55-1595 TCGA-55-6712 TCGA-55-6978 
       42.31        12.16         6.21        48.62         0.79         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-7281 TCGA-55-7576 
        7.76         2.20        45.34        32.71         0.59         1.32 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 
       56.81        20.65        55.40         0.10        39.52         7.33 
TCGA-73-4658 TCGA-73-4666 TCGA-73-4668 TCGA-73-4676 TCGA-78-7145 TCGA-78-7146 
       52.57        20.28        15.35         4.01        27.16         5.65 
TCGA-78-7535 TCGA-78-7542 TCGA-86-7711 TCGA-91-6829 TCGA-91-6836 TCGA-91-6847 
       31.20        10.55         0.89        41.33         0.36        26.93 
TCGA-91-6848 TCGA-95-7039 TCGA-95-7567 TCGA-97-7554 
        4.18         1.12         5.36         8.65 

$subtype3
TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       37.02         9.96        24.03         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4432 TCGA-05-4433 TCGA-05-5420 TCGA-05-5425 
       29.95        30.02        25.02        24.00         1.02         2.96 
TCGA-05-5429 TCGA-35-5375 TCGA-38-4630 TCGA-38-4631 TCGA-44-5643 TCGA-44-5644 
        0.99         8.68        35.28        11.64         3.48        16.37 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6778 TCGA-44-7660 TCGA-44-7667 TCGA-44-7669 
        3.35         9.93        36.49         5.33        18.31        18.87 
TCGA-44-7670 TCGA-49-4487 TCGA-49-4506 TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 
       17.46        28.11        32.84         8.81        43.20        15.02 
TCGA-49-6743 TCGA-50-5051 TCGA-50-5072 TCGA-50-5931 TCGA-50-5936 TCGA-50-5939 
       12.13        14.96         8.05         8.78         8.45        15.12 
TCGA-50-6591 TCGA-50-6592 TCGA-50-7109 TCGA-53-7624 TCGA-55-1592 TCGA-55-1594 
        3.88        25.51         8.38        35.11        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
       45.17         2.86        32.61        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6984 TCGA-55-6987 TCGA-64-1678 
        0.92        48.49         3.88        24.99        38.47        39.09 
TCGA-64-5774 TCGA-64-5779 TCGA-67-3771 TCGA-73-4659 TCGA-73-4670 TCGA-78-7148 
       83.84        16.67         1.97        23.38         0.46        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       35.93        21.86        24.99        19.50        38.50        32.09 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7166 TCGA-78-7220 TCGA-78-7536 
       40.11        22.29         7.04         8.48        26.53         8.02 
TCGA-78-7537 TCGA-78-7633 TCGA-86-7713 TCGA-91-6828 TCGA-91-6830 TCGA-91-6831 
       53.33        32.68         0.23         1.22         0.03         1.28 
TCGA-95-7043 
        0.07 

subtype1 subtype2 subtype3 
    0.07     0.03     0.03 
subtype1 subtype2 subtype3 
  223.96    77.88    83.84 
subtype1 subtype2 subtype3 
  14.010   12.825   17.460 
[1] "0.1 - 224.0 (14.0)" "0.0 - 77.9 (12.8)"  "0.0 - 83.8 (17.5)" 
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [19] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [25] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [55] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [61] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [67] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [85] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [97] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[109] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[115] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[121] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[163] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[175] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[181] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[199] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[205] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[211] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[217] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[223] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[229] "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [19] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [25] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [55] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [61] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [67] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [85] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [97] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[109] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[115] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[121] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[163] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[175] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[181] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[199] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[205] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[211] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[217] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[223] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[229] "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [19] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [25] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [31] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [55] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [61] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [67] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [85] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [97] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[109] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[115] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[121] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[163] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[169] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[175] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[181] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[187] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[199] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[205] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[211] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[217] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[223] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[229] "subtype2" "subtype1"
D7V2, continuous
D7V3, binary
          cls
clus        0  1
  subtype1 58 29
  subtype2 51 36
  subtype3 35 54
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   58   29
  subtype2   51   36
  subtype3   35   54
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       58       51       35
  MALE         29       36       54
D7V4, continuous
D7V5, multiclass
D7V6, multiclass
D7V7, multiclass
D7V8, multiclass
D7V9, multiclass
D7V10, binary
          cls
clus        0  1
  subtype1  5 82
  subtype2  6 81
  subtype3  6 83
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   82
  subtype2    6   81
  subtype3    6   83
     clus
vv    subtype1 subtype2 subtype3
  NO         5        6        6
  YES       82       81       83
D7V11, binary
          cls
clus        0  1
  subtype1 13 74
  subtype2 17 70
  subtype3 11 78
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   13   74
  subtype2   17   70
  subtype3   11   78
     clus
vv    subtype1 subtype2 subtype3
  NO        13       17       11
  YES       74       70       78

Clustering(8) Variable = MRNASEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 19 19
  subtype2 34 22
  subtype3 37 14
  subtype4 62 23
subtype1 subtype2 subtype3 subtype4 
      38       56       51       85 
subtype1 subtype2 subtype3 subtype4 
      19       22       14       23 
$subtype1
TCGA-05-4415 TCGA-05-4418 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 
        2.96         8.98        24.00        15.02         1.02         2.96 
TCGA-05-5429 TCGA-38-4631 TCGA-44-6145 TCGA-44-6146 TCGA-44-6779 TCGA-44-7670 
        0.99        11.64         3.35         9.93        16.41        17.46 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-50-5072 TCGA-50-5936 
       32.84         8.81        43.20        15.02         8.05         8.45 
TCGA-50-5939 TCGA-50-6592 TCGA-50-6673 TCGA-53-7624 TCGA-55-1596 TCGA-55-6970 
       15.12        25.51         0.72        35.11        45.17        15.25 
TCGA-55-6975 TCGA-55-6984 TCGA-64-5781 TCGA-73-4670 TCGA-78-7148 TCGA-78-7150 
        3.88        24.99        39.52         0.46        20.58        21.86 
TCGA-78-7154 TCGA-78-7160 TCGA-78-7166 TCGA-78-7220 TCGA-78-7540 TCGA-91-6830 
       19.50        22.29         8.48        26.53        28.96         0.03 
TCGA-95-7043 TCGA-97-7552 
        0.07        48.53 

$subtype2
TCGA-05-4250 TCGA-05-4398 TCGA-05-4405 TCGA-05-4427 TCGA-35-4122 TCGA-35-4123 
        3.98        47.05        20.05        26.01         7.36         5.95 
TCGA-38-4625 TCGA-38-4628 TCGA-38-4629 TCGA-38-4632 TCGA-44-2656 TCGA-44-2662 
       47.61        49.02        28.37        44.61        19.10        15.78 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 TCGA-44-6777 
        8.09        10.22         8.32         6.44         4.60        32.45 
TCGA-44-7661 TCGA-44-7662 TCGA-49-4488 TCGA-49-4494 TCGA-49-4505 TCGA-49-6745 
        5.03         1.64        28.57        35.54        14.07         4.93 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5066 TCGA-50-5933 TCGA-50-5941 TCGA-50-6590 
        0.03        20.48         9.76        77.88         9.37        42.31 
TCGA-50-6594 TCGA-50-6595 TCGA-55-1595 TCGA-55-6712 TCGA-55-6978 TCGA-55-6979 
       12.16         6.21        48.62         0.79         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-7576 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 
        2.20        45.34         1.32        56.81        20.65        55.40 
TCGA-64-5815 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4668 TCGA-73-4676 
        7.33         2.01        52.57        20.28        15.35         4.01 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7535 TCGA-78-7542 TCGA-91-6836 TCGA-95-7039 
       27.16         5.65        31.20        10.55         0.36         1.12 
TCGA-95-7567 TCGA-97-7554 
        5.36         8.65 

$subtype3
TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4417 TCGA-05-4420 
       19.92        37.02         9.96        24.03        14.93        29.95 
TCGA-05-4424 TCGA-05-4432 TCGA-35-5375 TCGA-38-4630 TCGA-44-5643 TCGA-44-5644 
       30.02        25.02         8.68        35.28         3.48        16.37 
TCGA-44-6774 TCGA-44-6778 TCGA-44-7660 TCGA-44-7667 TCGA-44-7669 TCGA-49-4487 
        5.42        36.49         5.33        18.31        18.87        28.11 
TCGA-49-6743 TCGA-50-5051 TCGA-50-5931 TCGA-50-5946 TCGA-50-6591 TCGA-50-7109 
       12.13        14.96         8.78        11.47         3.88         8.38 
TCGA-55-1592 TCGA-55-1594 TCGA-55-5899 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 
       23.05        38.73         2.86        32.61        42.48        40.70 
TCGA-55-6971 TCGA-55-6987 TCGA-55-7574 TCGA-64-1678 TCGA-64-5774 TCGA-64-5775 
        0.92        38.47         3.12        39.09        83.84         0.10 
TCGA-64-5779 TCGA-67-3771 TCGA-73-4659 TCGA-78-7153 TCGA-78-7155 TCGA-78-7159 
       16.67         1.97        23.38        24.99        38.50        40.11 
TCGA-78-7161 TCGA-78-7536 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 
        7.04         8.02         0.89         0.23         1.22        41.33 
TCGA-91-6831 TCGA-91-6847 TCGA-91-6848 
        1.28        26.93         4.18 

$subtype4
TCGA-05-4249 TCGA-05-4384 TCGA-05-4402 TCGA-05-4426 TCGA-05-4430 TCGA-05-5423 
       38.07        14.01         8.02        26.01        25.02         4.96 
TCGA-05-5715 TCGA-35-3615 TCGA-38-4626 TCGA-38-4627 TCGA-38-6178 TCGA-38-7271 
        2.04         0.46        85.32        37.71         5.19        26.30 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 
       18.87        13.15        17.39         3.39        13.15         3.19 
TCGA-44-3919 TCGA-44-5645 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 
        6.21         6.84         7.76         3.12         2.70        63.72 
TCGA-44-7659 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4490 TCGA-49-4501 
        9.80        17.59        13.74        76.21        12.66        46.72 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6744 TCGA-50-5049 TCGA-50-5055 TCGA-50-5068 
       29.46        29.75        12.99        48.82        25.81        49.28 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5942 TCGA-50-5944 TCGA-50-6593 TCGA-50-6597 
       35.87        21.47         4.44        12.26        11.05        33.37 
TCGA-53-7626 TCGA-55-6543 TCGA-55-6972 TCGA-55-6982 TCGA-55-6983 TCGA-55-6985 
       31.89         0.07        48.49        32.71        60.03        40.54 
TCGA-55-6986 TCGA-55-7227 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-64-1680 
       71.05         2.01         0.59         1.12         0.13        37.02 
TCGA-64-1681 TCGA-64-5778 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       44.38        30.44         0.99         0.59         2.04         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-73-4662 TCGA-73-4675 TCGA-73-4677 
        0.89         0.69        13.87        29.95         1.32         1.25 
TCGA-78-7143 TCGA-78-7147 TCGA-78-7149 TCGA-78-7152 TCGA-78-7156 TCGA-78-7158 
      163.10        19.27        35.93        39.48        32.09         5.88 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7167 TCGA-78-7537 TCGA-78-7539 TCGA-78-7633 
      104.15       223.96        88.11        53.33        10.75        32.68 
TCGA-91-6835 TCGA-91-6849 TCGA-93-7348 TCGA-97-7546 TCGA-97-7547 TCGA-97-7553 
        1.15         0.92         4.18        31.66        47.18        43.76 
TCGA-99-7458 
        8.22 

subtype1 subtype2 subtype3 subtype4 
    0.03     0.03     0.10     0.07 
subtype1 subtype2 subtype3 subtype4 
   48.53    77.88    83.84   223.96 
subtype1 subtype2 subtype3 subtype4 
  15.070   10.385   16.670   17.390 
[1] "0.0 - 48.5 (15.1)"  "0.0 - 77.9 (10.4)"  "0.1 - 83.8 (16.7)" 
[4] "0.1 - 224.0 (17.4)"
  [1] "subtype4" "subtype2" "subtype3" "subtype4" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype4" "subtype2" "subtype1" "subtype3"
 [13] "subtype1" "subtype3" "subtype3" "subtype4" "subtype2" "subtype4"
 [19] "subtype3" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
 [25] "subtype1" "subtype4" "subtype4" "subtype2" "subtype2" "subtype3"
 [31] "subtype2" "subtype4" "subtype4" "subtype2" "subtype2" "subtype3"
 [37] "subtype1" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
 [43] "subtype4" "subtype4" "subtype4" "subtype2" "subtype4" "subtype4"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype4" "subtype2"
 [55] "subtype3" "subtype3" "subtype4" "subtype1" "subtype1" "subtype4"
 [61] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype3"
 [67] "subtype1" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype3" "subtype1" "subtype4" "subtype4" "subtype4" "subtype3"
 [79] "subtype2" "subtype4" "subtype2" "subtype4" "subtype2" "subtype1"
 [85] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype3"
 [91] "subtype4" "subtype2" "subtype2" "subtype2" "subtype4" "subtype3"
 [97] "subtype4" "subtype2" "subtype4" "subtype1" "subtype3" "subtype4"
[103] "subtype2" "subtype4" "subtype1" "subtype1" "subtype2" "subtype4"
[109] "subtype4" "subtype3" "subtype2" "subtype3" "subtype1" "subtype4"
[115] "subtype2" "subtype2" "subtype4" "subtype1" "subtype3" "subtype1"
[121] "subtype4" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[127] "subtype4" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[133] "subtype3" "subtype4" "subtype1" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
[145] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype3"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype4"
[157] "subtype4" "subtype3" "subtype3" "subtype4" "subtype3" "subtype1"
[163] "subtype2" "subtype4" "subtype3" "subtype4" "subtype4" "subtype4"
[169] "subtype4" "subtype4" "subtype4" "subtype2" "subtype2" "subtype3"
[175] "subtype4" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[181] "subtype4" "subtype4" "subtype2" "subtype2" "subtype4" "subtype1"
[187] "subtype4" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
[193] "subtype4" "subtype4" "subtype3" "subtype1" "subtype3" "subtype4"
[199] "subtype4" "subtype1" "subtype4" "subtype1" "subtype2" "subtype3"
[205] "subtype4" "subtype4" "subtype1" "subtype2" "subtype4" "subtype3"
[211] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype4"
[217] "subtype2" "subtype3" "subtype3" "subtype4" "subtype4" "subtype2"
[223] "subtype1" "subtype2" "subtype4" "subtype4" "subtype1" "subtype4"
[229] "subtype2" "subtype4"
  [1] "subtype4" "subtype2" "subtype3" "subtype4" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype4" "subtype2" "subtype1" "subtype3"
 [13] "subtype1" "subtype3" "subtype3" "subtype4" "subtype2" "subtype4"
 [19] "subtype3" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
 [25] "subtype1" "subtype4" "subtype4" "subtype2" "subtype2" "subtype3"
 [31] "subtype2" "subtype4" "subtype4" "subtype2" "subtype2" "subtype3"
 [37] "subtype1" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
 [43] "subtype4" "subtype4" "subtype4" "subtype2" "subtype4" "subtype4"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype4" "subtype2"
 [55] "subtype3" "subtype3" "subtype4" "subtype1" "subtype1" "subtype4"
 [61] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype3"
 [67] "subtype1" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype3" "subtype1" "subtype4" "subtype4" "subtype4" "subtype3"
 [79] "subtype2" "subtype4" "subtype2" "subtype4" "subtype2" "subtype1"
 [85] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype3"
 [91] "subtype4" "subtype2" "subtype2" "subtype2" "subtype4" "subtype3"
 [97] "subtype4" "subtype2" "subtype4" "subtype1" "subtype3" "subtype4"
[103] "subtype2" "subtype4" "subtype1" "subtype1" "subtype2" "subtype4"
[109] "subtype4" "subtype3" "subtype2" "subtype3" "subtype1" "subtype4"
[115] "subtype2" "subtype2" "subtype4" "subtype1" "subtype3" "subtype1"
[121] "subtype4" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[127] "subtype4" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[133] "subtype3" "subtype4" "subtype1" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
[145] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype3"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype4"
[157] "subtype4" "subtype3" "subtype3" "subtype4" "subtype3" "subtype1"
[163] "subtype2" "subtype4" "subtype3" "subtype4" "subtype4" "subtype4"
[169] "subtype4" "subtype4" "subtype4" "subtype2" "subtype2" "subtype3"
[175] "subtype4" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[181] "subtype4" "subtype4" "subtype2" "subtype2" "subtype4" "subtype1"
[187] "subtype4" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
[193] "subtype4" "subtype4" "subtype3" "subtype1" "subtype3" "subtype4"
[199] "subtype4" "subtype1" "subtype4" "subtype1" "subtype2" "subtype3"
[205] "subtype4" "subtype4" "subtype1" "subtype2" "subtype4" "subtype3"
[211] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype4"
[217] "subtype2" "subtype3" "subtype3" "subtype4" "subtype4" "subtype2"
[223] "subtype1" "subtype2" "subtype4" "subtype4" "subtype1" "subtype4"
[229] "subtype2" "subtype4"
  [1] "subtype4" "subtype2" "subtype3" "subtype4" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype4" "subtype2" "subtype1" "subtype3"
 [13] "subtype1" "subtype3" "subtype3" "subtype4" "subtype2" "subtype4"
 [19] "subtype3" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
 [25] "subtype1" "subtype4" "subtype4" "subtype2" "subtype2" "subtype3"
 [31] "subtype2" "subtype4" "subtype4" "subtype2" "subtype2" "subtype3"
 [37] "subtype1" "subtype2" "subtype4" "subtype4" "subtype4" "subtype2"
 [43] "subtype4" "subtype4" "subtype4" "subtype2" "subtype4" "subtype4"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype4" "subtype2"
 [55] "subtype3" "subtype3" "subtype4" "subtype1" "subtype1" "subtype4"
 [61] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype3"
 [67] "subtype1" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype3" "subtype1" "subtype4" "subtype4" "subtype4" "subtype3"
 [79] "subtype2" "subtype4" "subtype2" "subtype4" "subtype2" "subtype1"
 [85] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype3"
 [91] "subtype4" "subtype2" "subtype2" "subtype2" "subtype4" "subtype3"
 [97] "subtype4" "subtype2" "subtype4" "subtype1" "subtype3" "subtype4"
[103] "subtype2" "subtype4" "subtype1" "subtype1" "subtype2" "subtype4"
[109] "subtype4" "subtype3" "subtype2" "subtype3" "subtype1" "subtype4"
[115] "subtype2" "subtype2" "subtype4" "subtype1" "subtype3" "subtype1"
[121] "subtype4" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[127] "subtype4" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[133] "subtype3" "subtype4" "subtype1" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
[145] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype3"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype4"
[157] "subtype4" "subtype3" "subtype3" "subtype4" "subtype3" "subtype1"
[163] "subtype2" "subtype4" "subtype3" "subtype4" "subtype4" "subtype4"
[169] "subtype4" "subtype4" "subtype4" "subtype2" "subtype2" "subtype3"
[175] "subtype4" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[181] "subtype4" "subtype4" "subtype2" "subtype2" "subtype4" "subtype1"
[187] "subtype4" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
[193] "subtype4" "subtype4" "subtype3" "subtype1" "subtype3" "subtype4"
[199] "subtype4" "subtype1" "subtype4" "subtype1" "subtype2" "subtype3"
[205] "subtype4" "subtype4" "subtype1" "subtype2" "subtype4" "subtype3"
[211] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype4"
[217] "subtype2" "subtype3" "subtype3" "subtype4" "subtype4" "subtype2"
[223] "subtype1" "subtype2" "subtype4" "subtype4" "subtype1" "subtype4"
[229] "subtype2" "subtype4"
D8V2, continuous
D8V3, binary
          cls
clus        0  1
  subtype1 19 24
  subtype2 38 27
  subtype3 24 35
  subtype4 63 33
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   19   24
  subtype2   38   27
  subtype3   24   35
  subtype4   63   33
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       19       38       24       63
  MALE         24       27       35       33
D8V4, continuous
D8V5, multiclass
D8V6, multiclass
D8V7, multiclass
D8V8, multiclass
D8V9, multiclass
D8V10, binary
          cls
clus        0  1
  subtype1  3 40
  subtype2  4 61
  subtype3  4 55
  subtype4  6 90
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3   40
  subtype2    4   61
  subtype3    4   55
  subtype4    6   90
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         3        4        4        6
  YES       40       61       55       90
D8V11, binary
          cls
clus        0  1
  subtype1  7 36
  subtype2 13 52
  subtype3  6 53
  subtype4 15 81
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7   36
  subtype2   13   52
  subtype3    6   53
  subtype4   15   81
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         7       13        6       15
  YES       36       52       53       81

Clustering(9) Variable = MIRSEQ_CNMF
D9V1, survival
          sevent
clus2       0  1
  subtype1 69 26
  subtype2 68 34
  subtype3 34 19
subtype1 subtype2 subtype3 
      95      102       53 
subtype1 subtype2 subtype3 
      26       34       19 
$subtype1
TCGA-05-4384 TCGA-05-4426 TCGA-05-4433 TCGA-05-5429 TCGA-35-3615 TCGA-38-4626 
       14.01        26.01        24.00         0.99         0.46        85.32 
TCGA-38-7271 TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-3398 TCGA-44-3919 
       26.30        18.87        13.15         3.39         8.32         6.21 
TCGA-44-4112 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6776 TCGA-44-6777 
        4.60         6.84         3.35         9.93        63.72        32.45 
TCGA-44-7659 TCGA-44-7661 TCGA-44-7671 TCGA-44-7672 TCGA-49-4486 TCGA-49-4487 
        9.80         5.03        17.59        13.74        76.21        28.11 
TCGA-49-4490 TCGA-49-4505 TCGA-49-4510 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       12.66        14.07        29.46        12.99         4.93        20.48 
TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 TCGA-50-5932 TCGA-50-5936 
       71.47        14.96        25.81        49.28        35.87         8.45 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-53-7626 TCGA-55-6970 TCGA-55-6972 
        9.37         4.44        12.26        31.89        15.25        48.49 
TCGA-55-6984 TCGA-55-6986 TCGA-55-7227 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       24.99        71.05         2.01         0.59         1.12         0.13 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7903 TCGA-55-7911 TCGA-55-7914 
        1.32         1.28         1.02         0.62         0.69         0.10 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 TCGA-67-3774 
       37.02        44.38        30.44         7.33         0.99         0.59 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        0.89         0.69        13.87         6.12        22.68        13.61 
TCGA-69-7765 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 TCGA-78-7148 
        4.24         1.32         4.01       163.10        27.16        20.58 
TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 
       35.93        39.48        24.99        19.50        32.09         5.88 
TCGA-78-7160 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7537 TCGA-78-7540 
       22.29       104.15         8.48        88.11        53.33        28.96 
TCGA-78-7633 TCGA-91-6849 TCGA-91-7771 TCGA-93-7347 TCGA-95-7567 TCGA-97-7546 
       32.68         0.92         1.02         9.76         5.36        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7938 TCGA-99-7458 
       47.18        48.53        43.76         0.59         8.22 

$subtype2
TCGA-05-4250 TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
        3.98        19.92        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4430 
        8.02         2.96         8.98        29.95        30.02        25.02 
TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5715 
       25.02        15.02         1.02         4.96         2.96         2.04 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4628 TCGA-38-4630 
        7.36         5.95         8.68        47.61        49.02        35.28 
TCGA-38-4632 TCGA-44-2656 TCGA-44-2659 TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 
       44.61        19.10        17.39        15.78         3.19         8.09 
TCGA-44-3396 TCGA-44-3918 TCGA-44-5643 TCGA-44-5644 TCGA-44-7660 TCGA-44-7670 
       10.22         6.44         3.48        16.37         5.33        17.46 
TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4514 
       28.57        35.54        46.72        32.84         8.81        43.20 
TCGA-49-6743 TCGA-50-5049 TCGA-50-5066 TCGA-50-5930 TCGA-50-5931 TCGA-50-5935 
       12.13        48.82         9.76         9.27         8.78        21.47 
TCGA-50-5946 TCGA-50-6594 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7813 
       11.47        12.16        33.37         0.72        35.11        13.74 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6968 
       23.05        38.73        48.62        45.17         2.86        42.48 
TCGA-55-6969 TCGA-55-6971 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
       40.70         0.92         7.76         2.20        45.34        32.71 
TCGA-55-6987 TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-7910 TCGA-64-1676 
       38.47         0.79         1.78         0.53         6.48        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-67-3771 
       20.65        39.09        83.84         0.10        16.67         1.97 
TCGA-67-3772 TCGA-67-3773 TCGA-73-4659 TCGA-73-4662 TCGA-78-7146 TCGA-78-7147 
        0.59         2.04        23.38        29.95         5.65        19.27 
TCGA-78-7155 TCGA-78-7159 TCGA-78-7161 TCGA-78-7536 TCGA-78-7539 TCGA-78-7542 
       38.50        40.11         7.04         8.02        10.75        10.55 
TCGA-83-5908 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6830 TCGA-91-6831 
       13.81         0.89         0.23         1.22         0.03         1.28 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-95-7039 TCGA-95-7043 TCGA-97-7941 
        1.15         0.36        26.93         1.12         0.07         0.72 

$subtype3
TCGA-05-4249 TCGA-05-4405 TCGA-05-4417 TCGA-05-4427 TCGA-38-4627 TCGA-38-4629 
       38.07        20.05        14.93        26.01        37.71        28.37 
TCGA-38-4631 TCGA-38-6178 TCGA-44-2665 TCGA-44-6144 TCGA-44-6147 TCGA-44-6774 
       11.64         5.19        13.15         0.30         7.76         5.42 
TCGA-44-6775 TCGA-44-6778 TCGA-44-6779 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
        2.70        36.49        16.41         1.64        18.31        18.87 
TCGA-49-4512 TCGA-49-6742 TCGA-49-6761 TCGA-50-5072 TCGA-50-5933 TCGA-50-5939 
       29.75        15.02         0.03         8.05        77.88        15.12 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-7109 
       42.31         3.88        25.51        11.05         6.21         8.38 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6978 TCGA-55-6983 TCGA-55-6985 
        0.07        32.61         0.79         5.46        60.03        40.54 
TCGA-55-7574 TCGA-55-7816 TCGA-64-1679 TCGA-64-5781 TCGA-69-7760 TCGA-71-6725 
        3.12         1.02        55.40        39.52         5.06         2.01 
TCGA-73-4658 TCGA-78-7150 TCGA-78-7163 TCGA-78-7220 TCGA-78-7535 TCGA-86-7701 
       52.57        21.86       223.96        26.53        31.20         0.36 
TCGA-91-6829 TCGA-91-6848 TCGA-93-7348 TCGA-97-7554 TCGA-97-7937 
       41.33         4.18         4.18         8.65         5.95 

subtype1 subtype2 subtype3 
    0.10     0.03     0.03 
subtype1 subtype2 subtype3 
  163.10    83.84   223.96 
subtype1 subtype2 subtype3 
   13.74    11.80    14.93 
[1] "0.1 - 163.1 (13.7)" "0.0 - 83.8 (11.8)"  "0.0 - 224.0 (14.9)"
  [1] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [37] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [49] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [73] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [97] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[157] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[163] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[175] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[187] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[193] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[199] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[205] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[211] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[235] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[247] "subtype3" "subtype1" "subtype2" "subtype1"
  [1] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [37] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [49] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [73] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [97] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[157] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[163] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[175] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[187] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[193] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[199] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[205] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[211] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[235] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[247] "subtype3" "subtype1" "subtype2" "subtype1"
  [1] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [37] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [49] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [67] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [73] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [97] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[157] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[163] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[175] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[187] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[193] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[199] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[205] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[211] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[235] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[247] "subtype3" "subtype1" "subtype2" "subtype1"
D9V2, continuous
D9V3, binary
          cls
clus        0  1
  subtype1 59 48
  subtype2 62 57
  subtype3 33 25
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   59   48
  subtype2   62   57
  subtype3   33   25
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       59       62       33
  MALE         48       57       25
D9V4, continuous
D9V5, multiclass
D9V6, multiclass
D9V7, multiclass
D9V8, multiclass
D9V9, multiclass
D9V10, binary
          cls
clus         0   1
  subtype1   8  99
  subtype2   7 112
  subtype3   3  55
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8   99
  subtype2    7  112
  subtype3    3   55
     clus
vv    subtype1 subtype2 subtype3
  NO         8        7        3
  YES       99      112       55
D9V11, binary
          cls
clus         0   1
  subtype1  18  89
  subtype2  12 107
  subtype3  11  47
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   18   89
  subtype2   12  107
  subtype3   11   47
     clus
vv    subtype1 subtype2 subtype3
  NO        18       12       11
  YES       89      107       47

Clustering(10) Variable = MIRSEQ_CHIERARCHICAL
D10V1, survival
          sevent
clus2       0  1
  subtype1 10  6
  subtype2 87 32
  subtype3 74 41
subtype1 subtype2 subtype3 
      16      119      115 
subtype1 subtype2 subtype3 
       6       32       41 
$subtype1
TCGA-05-4405 TCGA-38-4627 TCGA-38-4629 TCGA-38-6178 TCGA-44-2655 TCGA-44-2665 
       20.05        37.71        28.37         5.19        18.87        13.15 
TCGA-44-6774 TCGA-49-4512 TCGA-50-6591 TCGA-50-6595 TCGA-55-6543 TCGA-67-6216 
        5.42        29.75         3.88         6.21         0.07         0.69 
TCGA-73-4658 TCGA-78-7163 TCGA-93-7348 TCGA-97-7554 
       52.57       223.96         4.18         8.65 

$subtype2
TCGA-05-4250 TCGA-05-4384 TCGA-05-4426 TCGA-05-4433 TCGA-05-4434 TCGA-05-5429 
        3.98        14.01        26.01        24.00        15.02         0.99 
TCGA-35-3615 TCGA-35-4122 TCGA-38-4626 TCGA-38-7271 TCGA-44-2656 TCGA-44-2657 
        0.46         7.36        85.32        26.30        19.10        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2666 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       17.39         3.39         3.19         8.32         6.44         6.21 
TCGA-44-4112 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6775 
        4.60         6.84         3.35         9.93         7.76         2.70 
TCGA-44-6776 TCGA-44-6777 TCGA-44-7659 TCGA-44-7661 TCGA-44-7671 TCGA-44-7672 
       63.72        32.45         9.80         5.03        17.59        13.74 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4501 TCGA-49-4505 TCGA-49-4510 TCGA-49-6744 
       76.21        28.11        46.72        14.07        29.46        12.99 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 
        4.93        20.48        71.47        14.96        25.81        49.28 
TCGA-50-5932 TCGA-50-5936 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6593 
       35.87         8.45         9.37         4.44        12.26        11.05 
TCGA-50-6597 TCGA-53-7626 TCGA-55-1595 TCGA-55-6712 TCGA-55-6970 TCGA-55-6972 
       33.37        31.89        48.62         0.79        15.25        48.49 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-7227 TCGA-55-7281 
       60.03        24.99        40.54        71.05         2.01         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7816 TCGA-55-7903 TCGA-55-7911 TCGA-55-7914 TCGA-64-1677 
        0.79         1.02         0.62         0.69         0.10        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-1681 TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 
       39.09        37.02        44.38        30.44         7.33         0.99 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 
        2.04         0.59         0.89        13.87         6.12        22.68 
TCGA-69-7765 TCGA-71-6725 TCGA-73-4662 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 
        4.24         2.01        29.95         1.32         4.01       163.10 
TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 
       27.16        19.27        20.58        35.93        39.48        24.99 
TCGA-78-7154 TCGA-78-7156 TCGA-78-7160 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 
       19.50        32.09        22.29       104.15         8.48        88.11 
TCGA-78-7535 TCGA-78-7537 TCGA-78-7540 TCGA-78-7633 TCGA-91-6835 TCGA-91-6849 
       31.20        53.33        28.96        32.68         1.15         0.92 
TCGA-91-7771 TCGA-93-7347 TCGA-95-7567 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        1.02         9.76         5.36        31.66        47.18        48.53 
TCGA-97-7553 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-99-7458 
       43.76         5.95         0.59         0.72         8.22 

$subtype3
TCGA-05-4249 TCGA-05-4382 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       38.07        19.92        37.02         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 
        8.02         2.96        14.93         8.98        29.95        30.02 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       26.01        25.02        25.02         1.02         4.96         2.96 
TCGA-05-5715 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4628 TCGA-38-4630 
        2.04         5.95         8.68        47.61        49.02        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-44-2662 TCGA-44-2668 TCGA-44-3396 TCGA-44-5643 
       11.64        44.61        15.78         8.09        10.22         3.48 
TCGA-44-5644 TCGA-44-6144 TCGA-44-6778 TCGA-44-6779 TCGA-44-7660 TCGA-44-7662 
       16.37         0.30        36.49        16.41         5.33         1.64 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
       18.31        18.87        17.46        28.57        12.66        35.54 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6761 
       32.84         8.81        43.20        15.02        12.13         0.03 
TCGA-50-5049 TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 
       48.82         9.76         8.05         9.27         8.78        77.88 
TCGA-50-5935 TCGA-50-5939 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6594 
       21.47        15.12        11.47        42.31        25.51        12.16 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 
        0.72         8.38        35.11        13.74        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 
       45.17         2.86        32.61        42.48        40.70         0.92 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6987 
        5.46         7.76         2.20        45.34        32.71        38.47 
TCGA-55-7815 TCGA-55-7907 TCGA-55-7910 TCGA-64-1676 TCGA-64-1679 TCGA-64-5774 
        1.78         0.53         6.48        56.81        55.40        83.84 
TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 TCGA-67-3772 TCGA-69-7760 
        0.10        16.67        39.52         1.97         0.59         5.06 
TCGA-69-7764 TCGA-73-4659 TCGA-78-7146 TCGA-78-7150 TCGA-78-7155 TCGA-78-7158 
       13.61        23.38         5.65        21.86        38.50         5.88 
TCGA-78-7159 TCGA-78-7161 TCGA-78-7220 TCGA-78-7536 TCGA-78-7539 TCGA-78-7542 
       40.11         7.04        26.53         8.02        10.75        10.55 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-91-6828 TCGA-91-6829 
       13.81         0.36         0.89         0.23         1.22        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-95-7039 
        0.03         1.28         0.36        26.93         4.18         1.12 
TCGA-95-7043 
        0.07 

subtype1 subtype2 subtype3 
    0.07     0.10     0.03 
subtype1 subtype2 subtype3 
  223.96   163.10    83.84 
subtype1 subtype2 subtype3 
   10.90    13.74    13.61 
[1] "0.1 - 224.0 (10.9)" "0.1 - 163.1 (13.7)" "0.0 - 83.8 (13.6)" 
  [1] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
  [7] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [37] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[115] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[169] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[175] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[181] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[187] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[211] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[217] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[235] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[247] "subtype2" "subtype2" "subtype2" "subtype2"
  [1] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
  [7] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [37] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[115] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[169] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[175] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[181] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[187] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[211] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[217] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[235] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[247] "subtype2" "subtype2" "subtype2" "subtype2"
  [1] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
  [7] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [37] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[115] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[121] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[133] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[163] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[169] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[175] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[181] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[187] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[193] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[211] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[217] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[235] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[247] "subtype2" "subtype2" "subtype2" "subtype2"
D10V2, continuous
D10V3, binary
          cls
clus        0  1
  subtype1 17  2
  subtype2 75 56
  subtype3 62 72
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17    2
  subtype2   75   56
  subtype3   62   72
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       17       75       62
  MALE          2       56       72
D10V4, continuous
[1] "Remove cluster labels:" "subtype1"              
clus
subtype1 subtype2 subtype3 
       1       14        9 
 [1] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [7] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[13] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[19] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
D10V5, multiclass
D10V6, multiclass
D10V7, multiclass
D10V8, multiclass
D10V9, multiclass
D10V10, binary
          cls
clus         0   1
  subtype1   0  19
  subtype2   9 122
  subtype3   9 125
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   19
  subtype2    9  122
  subtype3    9  125
     clus
vv    subtype1 subtype2 subtype3
  NO         0        9        9
  YES       19      122      125
D10V11, binary
          cls
clus         0   1
  subtype1   6  13
  subtype2  21 110
  subtype3  14 120
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6   13
  subtype2   21  110
  subtype3   14  120
     clus
vv    subtype1 subtype2 subtype3
  NO         6       21       14
  YES       13      110      120
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
                           "PATHOLOGY.T" 
                                      V7 
                           "PATHOLOGY.N" 
                                      V8 
                   "PATHOLOGICSPREAD(M)" 
                                      V9 
                           "TUMOR.STAGE" 
                                     V10 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V11 
                   "NEOADJUVANT.THERAPY" 
> q(save="no")
