
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.73.3976/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.73.3976/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/OV/1929639/1.GDAC_mergedClustering.Finished/OV.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/OV/1709128/1.GDAC_clinicalDataPicker.Finished/OV.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=1", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=580, in cluster file=578, common to both=569
[1]  12 569
[1] "MRNA_CNMF"
[1] 3
  1   2   3 
225 207 132 
  1   2   3 
225 207 132 
[1] "MRNA_CHIERARCHICAL"
[1] 3
  1   2   3 
209 223 132 
  1   2   3 
209 223 132 
[1] "MIR_CNMF"
[1] 3
  1   2   3 
159 163 240 
  1   2   3 
159 163 240 
[1] "MIR_CHIERARCHICAL"
[1] 3
  1   2   3 
200 186 176 
  1   2   3 
200 186 176 
[1] "CN_CNMF"
[1] 3
  1   2   3 
157 195 202 
  1   2   3 
157 195 202 
[1] "METHLYATION_CNMF"
[1] 3
  1   2   3   4 
105 137 151 156 
  1   2   3   4 
105 137 151 156 
[1] "RPPA_CNMF"
[1] 3
  1   2   3 
128 207  72 
  1   2   3 
128 207  72 
[1] "RPPA_CHIERARCHICAL"
[1] 3
  1   2   3   4 
101  68 145  93 
  1   2   3   4 
101  68 145  93 
[1] "MRNASEQ_CNMF"
[1] 3
  1   2   3 
 81 101 115 
  1   2   3 
 81 101 115 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 35 115 147 
  1   2   3 
 35 115 147 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
113 195 146 
  1   2   3 
113 195 146 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
  3 153 298 
  1   2   3 
  3 153 298 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                                      
 [2] "DAYSTODEATH"                                       
 [3] "DAYSTOLASTFOLLOWUP"                                
 [4] "VITALSTATUS"                                       
 [5] "DCCUPLOADDATE"                                     
 [6] "PRIMARYSITEOFDESEASE"                              
 [7] "GENDER"                                            
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"                  
 [9] "RADIATIONTHERAPY"                                  
[10] "KARNOFSKYPERFORMANCESCORE"                         
[11] "EXAMINATIONS.EXAMINATION.KARNOFSKYPERFORMANCESCORE"
[12] "HISTOLOGICALTYPE"                                  
[13] "TUMORGRADE"                                        
[14] "TUMORSTAGE"                                        
[15] "PATIENTTUMORRECURRENCESTATUS"                      
[16] "DAYSTOTUMORRECURRENCE"                             
[17] "CHEMOTHERAPY"                                      
[18] "RADIATIONS.RADIATION.REGIMENINDICATION"            
[19] "NEOADJUVANTTHERAPY"                                
[20] "BATCHNUMBER"                                       

Input Data has 20 rows and 569 columns.

[1] "Batch" "20"   
[1] "Last Follow UP"
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
        1224         1247           55         1495           61         1418 
TCGA-04-1341 TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 
          NA          563          361         1992         1918         1483 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1357 TCGA-04-1360 
         656         1946         1991         1499           NA           NA 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1369 
         989         1348         1024         2328         2174          642 
TCGA-04-1370 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1519 
        1824         2505         1720         1265          608           NA 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 
        1167         3622          884         2561         1685         1487 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
         848          871         1966         1102          969         1451 
TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 
        1379          887          288         1756          546         1081 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 
         303         1169         2717         2278         1265         1751 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
        1882         1684          927          547          178           92 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 
         260         2967          187          186         1069          137 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
        3418         2163         1919         1209          636          819 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
         379         1652          788         2478          562         1011 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
         982          356          118         1077         1089          460 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
         604          189          748         1355         1204           83 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
         377          945          462          541         1678           75 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 
         340          346          351         1036          981          944 
TCGA-13-0765 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 
         869          651          256         1184         1117          873 
TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 
         923          595          265          237          247          252 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
         249         1333         1073         1073          414         2096 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
        3260         2780         2259         2027         2141         1880 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0894 TCGA-13-0897 TCGA-13-0899 
        2068         2099         1319         1509         1748         1708 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 
        1736          589         1441         1470         1455         1367 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
        1364         1128          842         1036          912          643 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
         453          420          141          195          185          331 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
         201          224          184          180          208          143 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
         128          162         1661         2648         1877          894 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
        2982          629          681         2154         2521         1595 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 
        2237         1161         1497          129         1652         1144 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
        1167          425          999          504          128          134 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 
         145          126           78          118           94          433 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2066 TCGA-13-2071 
         372          261          328          266          295          191 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 
         701          789          797         2196          836          772 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 
         580          507           89           81         1446         1293 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
        1233          468          816          965         1503          268 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1107 TCGA-23-1109 TCGA-23-1110 
         885          574           68            9         1562         1658 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
          98          949         2089          139         1013         2616 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
        3953          130          194         1189         1018         1768 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
          16          759         3525         2661         2788         2342 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-23-2647 TCGA-23-2649 
        1516           84          143          137          135          116 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
         232          597          354          663         1264          233 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
         679         1645         1933         1442          192          194 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 
         238          243          239           23          190          183 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 
         181          163          146          528          862          583 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 
         568         1324          260         2218          379         1373 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 
        3224          277          104           36          675          820 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
        1745         1955          493         1721         1249         1579 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 
        1259         1767         2692         2148         1213          594 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
        1341         1384         1451          787          312          524 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
        2742         2687         1470         1163          253          106 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
         113          116          133          343          175          167 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
         298          689          919          499          336         2467 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 
         148         4623         1364         1769         1059         3336 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
         439         1641          562          857         1947         1353 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
        1736         1100           24           11         1446          962 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
        2143         1356           25         2049         1102          506 
TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 
        1007         1699         1620           31          819          973 
TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 
        1553         1126           31         1064         1977         1124 
TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1324 TCGA-25-1325 TCGA-25-1326 
        1033           91          365         1035          976          944 
TCGA-25-1328 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
        1979           90          565          548          480           11 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
         626          239            9         1732         1843         1081 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
        1558          454          760          549         2587          396 
TCGA-25-2390 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 
          NA         1492           31         1157           92          365 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
        1369          608         1278           90          882          942 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 
         820         2399         1360         1435         3095         1172 
TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 
          24         1025          948         2077           16          514 
TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 
         567         1815          555         1276          889         1053 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 
         517         2606         2031         1914         1189          950 
TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 
         699          741          685          526          376          360 
TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 
         374          454          254          219          163         1053 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 
        2621         1977         1900         1372          148         1285 
TCGA-29-2432 TCGA-29-2434 TCGA-29-2435 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
         360          349           34          297         1158         1579 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
        1103           75          477            8         1462         1366 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1869 TCGA-30-1880 
        1058          185         1114           36         1563         1751 
TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
         738          914         1484         1386          918          571 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 
         683          204         1293         1341           66          874 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 
         884          655          695          686          260          914 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 
         783          847          737          751         1066         1004 
TCGA-36-2532 TCGA-36-2533 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
         897           NA          906          788          763          724 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
         657           68          638          557          624          431 
TCGA-36-2549 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2587 TCGA-42-2588 
         184          491          349          435          276          287 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 TCGA-57-1583 
         230          227          232           NA          731          346 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
         643           53          679          881          762          761 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
        5480         2437          679         3532          286         1046 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
          65          164         1362          338          245          637 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 
         955          564          848          132          966          866 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 
        1484         1364         1089           74         1024         1329 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
          43          256          176          347          396          276 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
        1038          952         1126         1292         1488         1721 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
        2060         1321          479         1161           60          168 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 
         441          547          121          931         1212          932 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
          36         1398         1381          146          145         1573 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
        2182         1875         1776         1844         1992         1688 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
         197         2337          629         1354         3824          676 
TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        1579          483          193          945          261 
Variable 1:'AGE':	nDistinctValues=55,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=270,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=482,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=18,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'RADIATION.THERAPY':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=4,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'EXAMINATIONS.EXAMINATION.KARNOFSKYPERFORMANCESCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 13:'TUMOR.GRADE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'TUMOR.STAGE':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'PATIENTTUMORRECURRENCESTATUS':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'DAYSTOTUMORRECURRENCE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 17:'CHEMOTHERAPY':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 18:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 20:'BATCH.NUMBER':	nDistinctValues=13,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "PRIMARY.SITE.OF.DISEASE"               
[3] "KARNOFSKY.PERFORMANCE.SCORE"           
[4] "TUMOR.STAGE"                           
[5] "RADIATIONS.RADIATION.REGIMENINDICATION"
[6] "NEOADJUVANT.THERAPY"                   
[1] "TUMOR.?STAGE" "4"           
[1] "stage2"
vv
  1   2   3   4 
 16  26 434  87 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 569 columns, 1 survival variables, and 6 non-survival variables.
AGE, nv=55, binary=FALSE, numeric=TRUE
PRIMARY.SITE.OF.DISEASE, nv=3, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=4, binary=FALSE, numeric=TRUE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
 16  26 434  87 
[1] "table(vv)"
vv
  I  II III  IV 
 16  26 434  87 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 16  26 434  87 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 16  26 434  87 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2        0   1
  subtype1  95 127
  subtype2 115  90
  subtype3  57  75
subtype1 subtype2 subtype3 
     222      205      132 
subtype1 subtype2 subtype3 
     127       90       75 
$subtype1
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1342 TCGA-04-1347 TCGA-04-1350 
       40.24        41.00         1.81        18.51        63.06        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1364 TCGA-04-1367 TCGA-04-1369 TCGA-04-1371 
       65.46        49.28        33.67        71.47        21.11        82.36 
TCGA-04-1514 TCGA-04-1517 TCGA-04-1525 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 
       56.55        19.99        38.37        84.20        55.40        48.89 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1652 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       27.88        28.64        31.86        45.34        29.16         9.47 
TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1664 TCGA-09-1669 TCGA-09-1672 
       35.54         9.96        38.43        74.89        30.48         5.85 
TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
        3.02         8.55        97.55         4.50       112.37        71.11 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       39.75        20.91        26.93        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0938 TCGA-13-0717 
       18.48        11.70         3.88        35.41        19.86        24.59 
TCGA-13-0724 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0757 TCGA-13-0762 
        2.73        15.19        17.79        55.17        11.18        32.25 
TCGA-13-0766 TCGA-13-0794 TCGA-13-0799 TCGA-13-0800 TCGA-13-0802 TCGA-13-0883 
       21.40        30.35         7.79         8.12         8.19        68.91 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0891 TCGA-13-0899 TCGA-13-0901 TCGA-13-0906 
       66.64        70.39        69.01        56.15        19.36        44.94 
TCGA-13-0910 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0920 TCGA-13-0923 
       37.08        34.06        29.98        21.14        13.81         6.41 
TCGA-13-1403 TCGA-13-1407 TCGA-13-1409 TCGA-13-1477 TCGA-13-1482 TCGA-13-1487 
       10.88         6.05         6.84        54.61        61.71        22.39 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1495 TCGA-13-1505 TCGA-13-1506 
       82.88        52.44        73.55        49.22         4.21         4.41 
TCGA-13-1510 TCGA-13-2057 TCGA-13-2066 TCGA-20-0990 TCGA-20-0996 TCGA-20-1683 
        2.56        14.24         9.70        25.94        72.20        25.38 
TCGA-20-1684 TCGA-20-1686 TCGA-23-1021 TCGA-23-1022 TCGA-23-1024 TCGA-23-1029 
       19.07         2.93        47.54        42.51        15.39         8.81 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1107 TCGA-23-1109 TCGA-23-1110 
       29.10        18.87         2.24         0.30        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1119 TCGA-23-1121 TCGA-23-1122 
        3.22        31.20        68.68       129.96         6.38        39.09 
TCGA-23-1809 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0979 
        0.53         2.76         4.70         4.50         7.63        41.56 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1413 TCGA-24-1416 TCGA-24-1419 TCGA-24-1423 
       22.32        54.08         6.31         6.38         7.86         6.25 
TCGA-24-1424 TCGA-24-1426 TCGA-24-1430 TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 
        6.02         5.36        28.34        12.46       105.99         9.11 
TCGA-24-1544 TCGA-24-1548 TCGA-24-1552 TCGA-24-1555 TCGA-24-1557 TCGA-24-1558 
       26.96        16.21        41.39        88.50        39.88        19.53 
TCGA-24-1560 TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1616 TCGA-24-1844 
       44.09        17.23        90.15        48.33        38.24         3.72 
TCGA-24-1923 TCGA-24-2019 TCGA-24-2020 TCGA-24-2024 TCGA-24-2027 TCGA-24-2030 
       22.65         4.87       151.99        58.16       109.68        53.95 
TCGA-24-2033 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2295 
       18.48        64.01        44.48        57.07        36.16        33.11 
TCGA-24-2297 TCGA-25-1312 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
       55.86         1.02        31.99        51.06        37.02         1.02 
TCGA-25-1321 TCGA-25-1323 TCGA-25-1324 TCGA-25-1325 TCGA-25-1627 TCGA-25-1631 
       33.96        12.00        34.03        32.09         0.36         0.30 
TCGA-25-1632 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-2393 
       56.94        35.54        14.93        24.99        18.05        38.04 
TCGA-25-2400 TCGA-29-1691 TCGA-29-1696 TCGA-29-1697 TCGA-29-1702 TCGA-29-1703 
       42.02        47.18        33.70        31.17        18.64        59.67 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1774 TCGA-29-1775 TCGA-29-2414 TCGA-29-2425 
       85.68        66.77        17.29        12.36        86.17        65.00 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2434 TCGA-30-1714 TCGA-30-1853 TCGA-30-1859 
        4.87        42.25        11.47        38.07        36.26        48.07 
TCGA-30-1866 TCGA-31-1955 TCGA-36-1570 TCGA-36-1571 TCGA-36-1575 TCGA-36-1577 
       36.62        42.51        21.53        22.85         8.55        25.74 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2544 TCGA-36-2547 TCGA-36-2552 TCGA-42-2591 
       25.91        25.08        20.98        20.52        11.47         7.63 
TCGA-57-1582 TCGA-57-1583 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-59-2350 
       24.03        11.38        22.32        28.96        25.05        22.32 
TCGA-59-2352 TCGA-59-2363 TCGA-59-2372 TCGA-61-1728 TCGA-61-1730 TCGA-61-1741 
        9.40         5.39        44.78        27.88         4.34        33.67 
TCGA-61-1743 TCGA-61-1900 TCGA-61-1910 TCGA-61-1917 TCGA-61-2088 TCGA-61-2092 
       43.69         5.79        37.02        43.43         4.77        51.72 
TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 TCGA-61-2110 TCGA-61-2111 TCGA-61-2610 
       58.39        65.49        55.50        44.52       125.72        51.91 

$subtype2
TCGA-04-1336 TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1361 TCGA-04-1362 
       49.15        65.49        48.76        21.57        32.52        44.32 
TCGA-04-1365 TCGA-04-1516 TCGA-04-1536 TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 
       76.54        41.59        29.06        64.64        36.23        47.70 
TCGA-09-0366 TCGA-09-0367 TCGA-09-1662 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
       57.73        17.95        89.33        41.59        57.57        61.87 
TCGA-09-1668 TCGA-09-1670 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2051 
       55.36        17.98         6.15         6.12        35.15        63.09 
TCGA-09-2056 TCGA-10-0931 TCGA-10-0936 TCGA-10-0937 TCGA-13-0720 TCGA-13-0723 
       12.46        32.28        35.80        15.12        44.55        39.58 
TCGA-13-0725 TCGA-13-0755 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 
       12.39         2.47        11.38        11.54        34.06        31.04 
TCGA-13-0765 TCGA-13-0791 TCGA-13-0792 TCGA-13-0795 TCGA-13-0797 TCGA-13-0801 
       28.57        38.93        36.72        19.56         8.71         8.28 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0884 TCGA-13-0885 TCGA-13-0893 TCGA-13-0903 
       43.82        35.28       107.18        91.40        43.36        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0921 TCGA-13-0924 TCGA-13-1410 TCGA-13-1484 
       48.33        47.84         4.64         6.08         4.70        98.04 
TCGA-13-1488 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 TCGA-13-1507 
       70.82         4.24        54.31        37.61        13.97         4.77 
TCGA-13-1511 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-20-0987 
        3.88        12.23         8.58        10.78         8.75        23.05 
TCGA-20-0991 TCGA-20-1685 TCGA-20-1687 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       26.20        16.67         2.66        26.83        31.73        49.41 
TCGA-23-1118 TCGA-23-1120 TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 
       86.01         4.27        33.47        58.13        24.95       115.89 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2649 TCGA-24-0968 TCGA-24-0980 
       91.66        77.00        49.84         3.81        19.63         7.66 
TCGA-24-1104 TCGA-24-1417 TCGA-24-1428 TCGA-24-1431 TCGA-24-1436 TCGA-24-1466 
       63.55         7.82        17.36        19.17         8.55        45.14 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1549 TCGA-24-1551 TCGA-24-1553 
        3.42         1.18        22.19        56.58        51.91        58.09 
TCGA-24-1556 TCGA-24-1565 TCGA-24-1604 TCGA-24-1842 TCGA-24-1843 TCGA-24-1845 
       70.62        10.26        88.34         8.32         3.48         3.81 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1920 TCGA-24-1924 TCGA-24-1927 TCGA-24-1930 
        4.37        11.28         9.80        30.21        16.41        81.11 
TCGA-24-2023 TCGA-24-2026 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       44.84        34.82         0.79         0.36        47.54        31.63 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2290 TCGA-25-1313 TCGA-25-1319 TCGA-25-1322 
       44.58         0.82        36.23        26.93        65.00         2.99 
TCGA-25-1625 TCGA-25-1630 TCGA-25-1878 TCGA-25-2391 TCGA-25-2392 TCGA-25-2396 
       18.02         7.86        85.05        49.05         1.02         3.02 
TCGA-25-2397 TCGA-25-2399 TCGA-25-2409 TCGA-29-1688 TCGA-29-1694 TCGA-29-1699 
       12.00        19.99        26.96        78.87        38.53         0.53 
TCGA-29-1707 TCGA-29-1711 TCGA-29-1761 TCGA-29-1769 TCGA-29-1771 TCGA-29-1776 
       41.95        34.62        17.00        22.98        22.52        11.84 
TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 TCGA-29-2427 
       12.30        14.93         8.35         5.36        34.62        62.47 
TCGA-29-2428 TCGA-30-1856 TCGA-30-1860 TCGA-30-1880 TCGA-31-1944 TCGA-31-1946 
       45.11        15.68        44.91        57.57        45.57        30.18 
TCGA-31-1950 TCGA-31-1953 TCGA-36-1568 TCGA-36-1574 TCGA-36-1578 TCGA-36-1581 
       18.77         6.71        28.73        22.55        27.85        24.69 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2542 TCGA-36-2543 
       35.05        33.01        29.49        29.79        21.60         2.24 
TCGA-36-2545 TCGA-36-2549 TCGA-36-2551 TCGA-42-2582 TCGA-42-2589 TCGA-42-2590 
       18.31         6.05        16.14        14.30         7.56         7.46 
TCGA-57-1584 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2351 TCGA-59-2355 
       21.14        25.02       180.16        80.12       116.12         2.14 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1734 TCGA-61-1736 
        8.05        20.94        31.40        18.54        28.47        48.79 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1895 TCGA-61-1899 TCGA-61-1901 TCGA-61-1903 
       35.80         2.43         1.41         8.42        11.41        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
        9.07        34.13        31.30        42.48        48.92        56.58 
TCGA-61-1915 TCGA-61-1918 TCGA-61-1995 TCGA-61-2000 TCGA-61-2012 TCGA-61-2016 
       67.73        15.75         1.97        14.50        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2094 TCGA-61-2097 TCGA-61-2104 
       45.96        45.40         4.80        71.74        60.62        76.83 
TCGA-61-2109 
       20.68 

$subtype3
TCGA-04-1337 TCGA-04-1338 TCGA-04-1343 TCGA-04-1530 TCGA-10-0930 TCGA-13-0714 
        2.01        46.62        11.87       119.08        33.24         6.21 
TCGA-13-0726 TCGA-13-0768 TCGA-13-0793 TCGA-13-0805 TCGA-13-0807 TCGA-13-0886 
       31.07         8.42        28.70        35.28        13.61        74.27 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0894 TCGA-13-0897 TCGA-13-0900 TCGA-13-0908 
       61.81        67.99        49.61        57.47        57.07        44.84 
TCGA-13-0911 TCGA-13-0919 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 TCGA-13-1411 
       27.68        14.89         6.61         7.36         5.92         4.21 
TCGA-13-1412 TCGA-13-1481 TCGA-13-1483 TCGA-13-1485 TCGA-13-1494 TCGA-13-1499 
        5.33        87.06        29.39        20.68        38.17        38.37 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1509 TCGA-13-1512 TCGA-13-2071 TCGA-20-1682 
       32.84        16.57         4.14         3.09         6.28        27.48 
TCGA-23-1023 TCGA-23-1116 TCGA-23-1117 TCGA-23-2078 TCGA-23-2647 TCGA-24-0970 
       40.54         4.57        33.30        87.48         4.44        11.64 
TCGA-24-0975 TCGA-24-1105 TCGA-24-1418 TCGA-24-1422 TCGA-24-1425 TCGA-24-1427 
       21.80        47.41         7.99         0.76         5.95         4.80 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 TCGA-24-1545 TCGA-24-1546 TCGA-24-1550 
       18.67        43.53        72.92        57.37        64.27        41.06 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1849 TCGA-24-1850 TCGA-24-1928 
       45.50        47.70        25.87         5.75         5.49        11.05 
TCGA-24-2029 TCGA-24-2035 TCGA-24-2280 TCGA-24-2289 TCGA-24-2293 TCGA-24-2298 
       14.43        28.18        70.45        67.36        16.64        53.26 
TCGA-25-1318 TCGA-25-1320 TCGA-25-1326 TCGA-25-1328 TCGA-25-1329 TCGA-25-1623 
       34.98        36.95        31.04        65.06         2.96        18.58 
TCGA-25-1626 TCGA-25-1628 TCGA-25-1633 TCGA-25-1635 TCGA-25-2042 TCGA-25-2398 
       15.78        20.58        60.59        51.22        13.02        45.01 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-29-1690 TCGA-29-1693 TCGA-29-1695 
        2.96        29.00        30.97        44.71       101.75         0.79 
TCGA-29-1698 TCGA-29-1701 TCGA-29-1705 TCGA-29-1710 TCGA-29-1764 TCGA-29-1766 
       68.28        16.90        18.25        29.23        62.93        39.09 
TCGA-29-1768 TCGA-29-1770 TCGA-29-1783 TCGA-29-2432 TCGA-29-2436 TCGA-30-1718 
       31.23        24.36         7.20        11.84         9.76        51.91 
TCGA-30-1855 TCGA-30-1857 TCGA-30-1861 TCGA-30-1862 TCGA-30-1867 TCGA-30-1887 
        2.47         0.26        34.78         6.08         1.18        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1951 TCGA-31-1956 TCGA-31-1959 TCGA-36-1569 
       30.05        48.79        22.45        44.09         2.17        29.06 
TCGA-36-1576 TCGA-36-1580 TCGA-36-2540 TCGA-36-2548 TCGA-42-2587 TCGA-42-2588 
       30.05        24.23        23.80        14.17         9.07         9.44 
TCGA-57-1585 TCGA-59-2354 TCGA-61-1721 TCGA-61-1733 TCGA-61-1737 TCGA-61-1919 
        1.74        34.39        11.11        31.76        44.84        38.17 
TCGA-61-1998 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2095 
        5.52        17.98         3.98        30.61        39.85        61.64 
TCGA-61-2102 TCGA-61-2113 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.48        22.22        15.88         6.35        31.07         8.58 

subtype1 subtype2 subtype3 
    0.30     0.36     0.26 
subtype1 subtype2 subtype3 
  151.99   180.16   119.08 
subtype1 subtype2 subtype3 
  29.130   27.850   26.675 
[1] "0.3 - 152.0 (29.1)" "0.4 - 180.2 (27.9)" "0.3 - 119.1 (26.7)"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [19] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [43] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [55] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [61] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [67] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [73] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [79] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [97] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[103] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[109] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[115] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[121] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[127] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[133] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[145] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[151] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[157] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[163] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[175] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[181] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[187] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[193] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[205] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[223] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[235] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[241] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[247] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[259] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[265] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[271] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[277] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[283] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[289] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[295] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[301] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[307] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[313] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[319] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[325] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[331] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[337] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[343] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[349] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[355] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[361] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[367] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[373] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[379] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[385] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[391] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[397] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[403] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[409] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[415] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[421] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[427] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[433] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[439] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[445] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[451] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[457] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[463] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[469] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[475] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[481] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[487] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[493] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[499] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[505] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[511] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[517] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[523] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[529] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[535] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[541] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[547] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[553] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[559] "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [19] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [43] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [55] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [61] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [67] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [73] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [79] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [97] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[103] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[109] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[115] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[121] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[127] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[133] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[145] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[151] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[157] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[163] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[175] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[181] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[187] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[193] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[205] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[223] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[235] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[241] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[247] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[259] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[265] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[271] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[277] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[283] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[289] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[295] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[301] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[307] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[313] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[319] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[325] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[331] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[337] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[343] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[349] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[355] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[361] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[367] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[373] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[379] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[385] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[391] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[397] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[403] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[409] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[415] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[421] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[427] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[433] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[439] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[445] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[451] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[457] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[463] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[469] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[475] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[481] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[487] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[493] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[499] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[505] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[511] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[517] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[523] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[529] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[535] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[541] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[547] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[553] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[559] "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [19] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [43] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [55] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [61] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [67] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [73] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [79] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [97] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[103] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[109] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[115] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[121] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[127] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[133] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[139] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[145] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[151] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[157] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[163] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[175] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[181] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[187] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[193] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[205] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[223] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[235] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[241] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[247] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[259] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[265] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[271] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[277] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[283] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[289] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[295] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[301] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[307] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[313] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[319] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[325] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[331] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[337] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[343] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[349] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[355] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[361] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[367] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[373] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[379] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[385] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[391] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[397] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[403] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[409] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[415] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[421] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[427] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[433] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[439] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[445] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[451] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[457] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[463] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[469] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[475] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[481] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[487] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[493] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[499] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[505] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[511] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[517] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[523] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[529] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[535] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[541] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[547] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[553] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[559] "subtype3"
D1V2, continuous
D1V3, multiclass
D1V4, continuous
D1V5, multiclass
D1V6, binary
          cls
clus         0   1
  subtype1   2 223
  subtype2   1 206
  subtype3   0 132
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2  223
  subtype2    1  206
  subtype3    0  132
     clus
vv    subtype1 subtype2 subtype3
  NO         2        1        0
  YES      223      206      132
D1V7, binary
          cls
clus         0   1
  subtype1 176  49
  subtype2 173  34
  subtype3 107  25
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  176   49
  subtype2  173   34
  subtype3  107   25
     clus
vv    subtype1 subtype2 subtype3
  NO       176      173      107
  YES       49       34       25

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2        0   1
  subtype1  82 124
  subtype2 134  87
  subtype3  51  81
subtype1 subtype2 subtype3 
     206      221      132 
subtype1 subtype2 subtype3 
     124       87       81 
$subtype1
TCGA-04-1331 TCGA-04-1335 TCGA-04-1342 TCGA-04-1347 TCGA-04-1350 TCGA-04-1351 
       40.24         1.81        18.51        63.06        63.98        65.46 
TCGA-04-1356 TCGA-04-1362 TCGA-04-1364 TCGA-04-1367 TCGA-04-1369 TCGA-04-1371 
       49.28        44.32        33.67        71.47        21.11        82.36 
TCGA-04-1514 TCGA-04-1525 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
       56.55        38.37        84.20        55.40        48.89        27.88 
TCGA-04-1648 TCGA-04-1652 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0369 
       28.64        31.86        45.34        29.16         9.47        35.54 
TCGA-09-1661 TCGA-09-1664 TCGA-09-1669 TCGA-09-1673 TCGA-09-1674 TCGA-09-2048 
       38.43        74.89        30.48         3.02         8.55         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2054 TCGA-09-2055 TCGA-10-0925 TCGA-10-0926 
      112.37        71.11        20.91        26.93        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       81.47        18.48        11.70         3.88        35.41        35.80 
TCGA-10-0938 TCGA-13-0717 TCGA-13-0727 TCGA-13-0730 TCGA-13-0757 TCGA-13-0762 
       19.86        24.59        15.19        17.79        11.18        32.25 
TCGA-13-0794 TCGA-13-0800 TCGA-13-0802 TCGA-13-0883 TCGA-13-0888 TCGA-13-0899 
       30.35         8.12         8.19        68.91        70.39        56.15 
TCGA-13-0906 TCGA-13-0912 TCGA-13-0913 TCGA-13-0920 TCGA-13-1407 TCGA-13-1409 
       44.94        34.06        29.98        13.81         6.05         6.84 
TCGA-13-1477 TCGA-13-1482 TCGA-13-1487 TCGA-13-1489 TCGA-13-1492 TCGA-13-1495 
       54.61        61.71        22.39        82.88        73.55        49.22 
TCGA-13-1497 TCGA-13-1506 TCGA-13-2057 TCGA-13-2066 TCGA-20-0990 TCGA-20-1683 
       54.31         4.41        14.24         9.70        25.94        25.38 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-23-1022 TCGA-23-1024 TCGA-23-1029 
       19.07        16.67         2.93        42.51        15.39         8.81 
TCGA-23-1031 TCGA-23-1032 TCGA-23-1107 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 
       18.87         2.24         0.30        51.35        54.51         3.22 
TCGA-23-1113 TCGA-23-1114 TCGA-23-1118 TCGA-23-1119 TCGA-23-1121 TCGA-23-1122 
       31.20        68.68        86.01       129.96         6.38        39.09 
TCGA-23-1123 TCGA-23-1809 TCGA-23-2641 TCGA-23-2643 TCGA-23-2647 TCGA-24-0979 
       33.47         0.53         2.76         4.70         4.44        41.56 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1413 TCGA-24-1416 TCGA-24-1419 TCGA-24-1424 
       22.32        54.08         6.31         6.38         7.86         6.02 
TCGA-24-1426 TCGA-24-1430 TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 TCGA-24-1474 
        5.36        28.34        12.46       105.99         9.11        22.19 
TCGA-24-1544 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1552 TCGA-24-1556 
       26.96        16.21        56.58        41.06        41.39        70.62 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 
       39.88        19.53        44.09        10.26        17.23        90.15 
TCGA-24-1614 TCGA-24-1844 TCGA-24-1850 TCGA-24-1920 TCGA-24-2019 TCGA-24-2020 
       48.33         3.72         5.49         9.80         4.87       151.99 
TCGA-24-2024 TCGA-24-2027 TCGA-24-2030 TCGA-24-2033 TCGA-24-2036 TCGA-24-2260 
       58.16       109.68        53.95        18.48        64.01        36.16 
TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
       33.11        55.86         1.02        51.06        37.02         1.02 
TCGA-25-1319 TCGA-25-1321 TCGA-25-1323 TCGA-25-1324 TCGA-25-1325 TCGA-25-1627 
       65.00        33.96        12.00        34.03        32.09         0.36 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 
        0.30        56.94        35.54        14.93        24.99        18.05 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2400 TCGA-29-1691 TCGA-29-1696 TCGA-29-1697 
       38.04         3.02        42.02        47.18        33.70        31.17 
TCGA-29-1702 TCGA-29-1703 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1774 
       18.64        59.67        17.00        85.68        66.77        17.29 
TCGA-29-1778 TCGA-29-2414 TCGA-29-2425 TCGA-29-2431 TCGA-29-2434 TCGA-30-1714 
       14.93        86.17        65.00        42.25        11.47        38.07 
TCGA-30-1853 TCGA-30-1859 TCGA-30-1866 TCGA-31-1950 TCGA-31-1955 TCGA-36-1570 
       36.26        48.07        36.62        18.77        42.51        21.53 
TCGA-36-1571 TCGA-36-1575 TCGA-36-1577 TCGA-36-2537 TCGA-36-2544 TCGA-36-2547 
       22.85         8.55        25.74        25.91        20.98        20.52 
TCGA-36-2552 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1586 TCGA-57-1992 
       11.47         7.63        24.03        11.38        22.32        28.96 
TCGA-57-1993 TCGA-59-2349 TCGA-59-2350 TCGA-59-2352 TCGA-59-2363 TCGA-59-2372 
       25.05        80.12        22.32         9.40         5.39        44.78 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1736 TCGA-61-1741 TCGA-61-1743 TCGA-61-1900 
       27.88         4.34        48.79        33.67        43.69         5.79 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
        4.77        51.72        58.39        65.49        55.50         6.48 
TCGA-61-2111 TCGA-61-2610 
      125.72        51.91 

$subtype2
TCGA-04-1336 TCGA-04-1343 TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1361 
       49.15        11.87        65.49        48.76        21.57        32.52 
TCGA-04-1365 TCGA-04-1516 TCGA-04-1517 TCGA-04-1536 TCGA-04-1649 TCGA-04-1651 
       76.54        41.59        19.99        29.06        64.64        36.23 
TCGA-04-1654 TCGA-09-0366 TCGA-09-0367 TCGA-09-1659 TCGA-09-1662 TCGA-09-1665 
       47.70        57.73        17.95         9.96        89.33        41.59 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1670 TCGA-09-1672 TCGA-09-1675 
       57.57        61.87        55.36        17.98         5.85        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2051 TCGA-09-2053 TCGA-09-2056 
        6.15         6.12        35.15        63.09        39.75        12.46 
TCGA-10-0931 TCGA-10-0937 TCGA-13-0714 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       32.28        15.12         6.21        44.55        39.58         2.73 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0760 TCGA-13-0764 TCGA-13-0765 TCGA-13-0766 
       55.17         2.47        11.54        31.04        28.57        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
        8.42        38.93        36.72        19.56         8.71         7.79 
TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0885 
        8.28        43.82        35.28        35.28        13.61        91.40 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0903 TCGA-13-0904 
       74.27        66.64        61.81        67.99        47.38        48.33 
TCGA-13-0905 TCGA-13-0910 TCGA-13-0911 TCGA-13-0916 TCGA-13-0921 TCGA-13-0923 
       47.84        37.08        27.68        21.14         4.64         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1410 TCGA-13-1484 TCGA-13-1488 
        6.08        10.88         6.61         4.70        98.04        70.82 
TCGA-13-1491 TCGA-13-1496 TCGA-13-1498 TCGA-13-1507 TCGA-13-1510 TCGA-13-1511 
       52.44         4.24        37.61         4.77         2.56         3.88 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-20-0987 TCGA-20-0991 
       12.23         8.58        10.78         8.75        23.05        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1687 TCGA-23-1021 TCGA-23-1028 TCGA-23-1030 
       72.20        27.48         2.66        47.54        49.41        29.10 
TCGA-23-1120 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 TCGA-23-2079 TCGA-23-2081 
        4.27        58.13        24.95       115.89        91.66        77.00 
TCGA-23-2084 TCGA-23-2645 TCGA-23-2649 TCGA-24-0966 TCGA-24-0968 TCGA-24-0980 
       49.84         4.50         3.81         7.63        19.63         7.66 
TCGA-24-1104 TCGA-24-1417 TCGA-24-1423 TCGA-24-1428 TCGA-24-1431 TCGA-24-1436 
       63.55         7.82         6.25        17.36        19.17         8.55 
TCGA-24-1466 TCGA-24-1470 TCGA-24-1471 TCGA-24-1551 TCGA-24-1553 TCGA-24-1555 
       45.14         3.42         1.18        51.91        58.09        88.50 
TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1845 TCGA-24-1846 
       88.34        38.24         8.32         3.48         3.81         4.37 
TCGA-24-1847 TCGA-24-1924 TCGA-24-1927 TCGA-24-2023 TCGA-24-2026 TCGA-24-2038 
       11.28        30.21        16.41        44.84        34.82        44.48 
TCGA-24-2254 TCGA-24-2261 TCGA-24-2267 TCGA-24-2281 TCGA-24-2290 TCGA-25-1313 
       57.07         0.79        47.54        44.58        36.23        26.93 
TCGA-25-1314 TCGA-25-1322 TCGA-25-1625 TCGA-25-1630 TCGA-25-1878 TCGA-25-2391 
       31.99         2.99        18.02         7.86        85.05        49.05 
TCGA-25-2392 TCGA-25-2397 TCGA-25-2399 TCGA-29-1688 TCGA-29-1690 TCGA-29-1699 
        1.02        12.00        19.99        78.87        44.71         0.53 
TCGA-29-1701 TCGA-29-1707 TCGA-29-1711 TCGA-29-1769 TCGA-29-1771 TCGA-29-1775 
       16.90        41.95        34.62        22.98        22.52        12.36 
TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 
       11.84        12.30         8.35         7.20         5.36        34.62 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-30-1856 TCGA-30-1860 TCGA-30-1880 
       62.47        45.11         4.87        15.68        44.91        57.57 
TCGA-31-1944 TCGA-31-1951 TCGA-31-1953 TCGA-36-1568 TCGA-36-1574 TCGA-36-1578 
       45.57        22.45         6.71        28.73        22.55        27.85 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2538 
       24.69        35.05        33.01        29.49        29.79        25.08 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2545 TCGA-36-2549 TCGA-36-2551 TCGA-42-2582 
       21.60         2.24        18.31         6.05        16.14        14.30 
TCGA-42-2589 TCGA-42-2590 TCGA-57-1584 TCGA-57-1994 TCGA-59-2351 TCGA-59-2355 
        7.56         7.46        21.14        25.02       116.12         2.14 
TCGA-61-1722 TCGA-61-1725 TCGA-61-1727 TCGA-61-1734 TCGA-61-1738 TCGA-61-1740 
        8.05        31.40        18.54        28.47        35.80         2.43 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        1.41         8.42        11.41        13.02         9.07        34.13 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
       31.30        37.02        42.48        48.92        56.58        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1995 TCGA-61-2000 TCGA-61-2008 TCGA-61-2009 
       43.43        15.75         1.97        14.50        30.61        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2094 
       30.64         1.18        45.96        45.40         4.80        71.74 
TCGA-61-2095 TCGA-61-2097 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       61.64        60.62        76.83        20.68        44.52 

$subtype3
TCGA-04-1332 TCGA-04-1337 TCGA-04-1338 TCGA-04-1530 TCGA-10-0930 TCGA-13-0725 
       41.00         2.01        46.62       119.08        33.24        12.39 
TCGA-13-0726 TCGA-13-0758 TCGA-13-0761 TCGA-13-0793 TCGA-13-0884 TCGA-13-0891 
       31.07        11.38        34.06        28.70       107.18        69.01 
TCGA-13-0893 TCGA-13-0894 TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0908 
       43.36        49.61        57.47        57.07        19.36        44.84 
TCGA-13-0919 TCGA-13-1405 TCGA-13-1408 TCGA-13-1411 TCGA-13-1412 TCGA-13-1481 
       14.89         7.36         5.92         4.21         5.33        87.06 
TCGA-13-1483 TCGA-13-1485 TCGA-13-1494 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 
       29.39        20.68        38.17        38.37        13.97        32.84 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1509 TCGA-13-1512 TCGA-13-2071 TCGA-23-1023 
       16.57         4.21         4.14         3.09         6.28        40.54 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1116 TCGA-23-1117 TCGA-23-2078 TCGA-24-0970 
       26.83        31.73         4.57        33.30        87.48        11.64 
TCGA-24-0975 TCGA-24-1105 TCGA-24-1418 TCGA-24-1422 TCGA-24-1425 TCGA-24-1427 
       21.80        47.41         7.99         0.76         5.95         4.80 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 TCGA-24-1545 TCGA-24-1546 TCGA-24-1562 
       18.67        43.53        72.92        57.37        64.27        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1849 TCGA-24-1923 TCGA-24-1928 TCGA-24-1930 
       47.70        25.87         5.75        22.65        11.05        81.11 
TCGA-24-2029 TCGA-24-2035 TCGA-24-2262 TCGA-24-2271 TCGA-24-2280 TCGA-24-2288 
       14.43        28.18         0.36        31.63        70.45         0.82 
TCGA-24-2289 TCGA-24-2293 TCGA-24-2298 TCGA-25-1318 TCGA-25-1320 TCGA-25-1326 
       67.36        16.64        53.26        34.98        36.95        31.04 
TCGA-25-1328 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 TCGA-25-1628 TCGA-25-1633 
       65.06         2.96        18.58        15.78        20.58        60.59 
TCGA-25-1635 TCGA-25-2042 TCGA-25-2398 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       51.22        13.02        45.01         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1698 TCGA-29-1705 
       26.96       101.75        38.53         0.79        68.28        18.25 
TCGA-29-1710 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1770 TCGA-29-2432 
       29.23        62.93        39.09        31.23        24.36        11.84 
TCGA-29-2436 TCGA-30-1718 TCGA-30-1855 TCGA-30-1857 TCGA-30-1861 TCGA-30-1862 
        9.76        51.91         2.47         0.26        34.78         6.08 
TCGA-30-1867 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1946 TCGA-31-1956 
        1.18        24.26        30.05        48.79        30.18        44.09 
TCGA-31-1959 TCGA-36-1569 TCGA-36-1576 TCGA-36-1580 TCGA-36-2540 TCGA-36-2548 
        2.17        29.06        30.05        24.23        23.80        14.17 
TCGA-42-2587 TCGA-42-2588 TCGA-57-1585 TCGA-59-2348 TCGA-59-2354 TCGA-61-1721 
        9.07         9.44         1.74       180.16        34.39        11.11 
TCGA-61-1724 TCGA-61-1733 TCGA-61-1737 TCGA-61-1919 TCGA-61-1998 TCGA-61-2002 
       20.94        31.76        44.84        38.17         5.52        17.98 
TCGA-61-2003 TCGA-61-2113 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        3.98        22.22        15.88         6.35        31.07         8.58 

subtype1 subtype2 subtype3 
    0.30     0.53     0.26 
subtype1 subtype2 subtype3 
  151.99   116.12   180.16 
subtype1 subtype2 subtype3 
   29.57    27.48    27.57 
[1] "0.3 - 152.0 (29.6)" "0.5 - 116.1 (27.5)" "0.3 - 180.2 (27.6)"
  [1] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [19] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [43] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [73] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [91] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[103] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[109] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[121] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[133] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[139] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[151] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[157] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[163] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[169] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[181] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[187] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[199] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[205] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[223] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[235] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[241] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[247] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[259] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[265] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[271] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[277] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[283] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[289] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[295] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[301] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[307] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[313] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[319] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[325] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[331] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[337] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[343] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[349] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[355] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[361] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[367] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[373] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[379] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[385] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[391] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[397] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[403] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[409] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[415] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[421] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[427] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[433] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[439] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[445] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[451] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[457] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[463] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[469] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[475] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[481] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[487] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[493] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[499] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[505] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[511] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[517] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[523] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[529] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[535] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[541] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[547] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[553] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[559] "subtype3"
  [1] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [19] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [43] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [73] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [91] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[103] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[109] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[121] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[133] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[139] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[151] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[157] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[163] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[169] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[181] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[187] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[199] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[205] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[223] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[235] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[241] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[247] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[259] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[265] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[271] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[277] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[283] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[289] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[295] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[301] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[307] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[313] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[319] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[325] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[331] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[337] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[343] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[349] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[355] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[361] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[367] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[373] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[379] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[385] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[391] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[397] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[403] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[409] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[415] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[421] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[427] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[433] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[439] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[445] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[451] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[457] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[463] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[469] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[475] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[481] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[487] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[493] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[499] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[505] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[511] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[517] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[523] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[529] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[535] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[541] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[547] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[553] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[559] "subtype3"
  [1] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [19] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [43] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [73] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [91] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[103] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[109] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[121] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[133] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[139] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[151] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[157] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[163] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[169] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[181] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[187] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[193] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[199] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[205] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[223] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[235] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[241] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[247] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[259] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[265] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[271] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[277] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[283] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[289] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[295] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[301] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[307] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[313] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[319] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[325] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[331] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[337] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[343] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[349] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[355] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[361] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[367] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[373] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[379] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[385] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[391] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[397] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[403] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[409] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[415] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[421] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[427] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[433] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[439] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[445] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[451] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[457] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[463] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[469] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[475] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[481] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[487] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[493] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[499] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[505] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[511] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[517] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[523] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[529] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[535] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[541] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[547] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[553] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[559] "subtype3"
D2V2, continuous
D2V3, multiclass
D2V4, continuous
D2V5, multiclass
D2V6, binary
          cls
clus         0   1
  subtype1   2 207
  subtype2   1 222
  subtype3   0 132
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2  207
  subtype2    1  222
  subtype3    0  132
     clus
vv    subtype1 subtype2 subtype3
  NO         2        1        0
  YES      207      222      132
D2V7, binary
          cls
clus         0   1
  subtype1 160  49
  subtype2 191  32
  subtype3 105  27
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  160   49
  subtype2  191   32
  subtype3  105   27
     clus
vv    subtype1 subtype2 subtype3
  NO       160      191      105
  YES       49       32       27

Clustering(3) Variable = MIR_CNMF
D3V1, survival
          sevent
clus2        0   1
  subtype1  72  86
  subtype2  68  92
  subtype3 125 114
subtype1 subtype2 subtype3 
     158      160      239 
subtype1 subtype2 subtype3 
      86       92      114 
$subtype1
TCGA-04-1331 TCGA-04-1338 TCGA-04-1343 TCGA-04-1348 TCGA-04-1351 TCGA-04-1362 
       40.24        46.62        11.87        48.76        65.46        44.32 
TCGA-04-1516 TCGA-04-1530 TCGA-04-1542 TCGA-04-1644 TCGA-04-1649 TCGA-04-1651 
       41.59       119.08        84.20        48.89        64.64        36.23 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1670 TCGA-09-1675 TCGA-09-2044 TCGA-09-2056 
       74.89        41.59        17.98        97.55         6.12        12.46 
TCGA-10-0928 TCGA-10-0931 TCGA-10-0933 TCGA-10-0936 TCGA-10-0938 TCGA-13-0724 
       18.48        32.28        11.70        35.80        19.86         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0758 TCGA-13-0760 TCGA-13-0791 TCGA-13-0792 
       12.39        31.07        11.38        11.54        38.93        36.72 
TCGA-13-0793 TCGA-13-0795 TCGA-13-0801 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
       28.70        19.56         8.28       107.18        91.40        74.27 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0903 TCGA-13-0911 TCGA-13-0919 TCGA-13-0924 
       69.01        43.36        47.38        27.68        14.89         6.08 
TCGA-13-1404 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 TCGA-13-1494 TCGA-13-1496 
        6.61        98.04        20.68        70.82        38.17         4.24 
TCGA-13-1500 TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2060 TCGA-13-2071 
       13.97         4.14         3.88         3.09         8.58         6.28 
TCGA-20-0987 TCGA-20-1684 TCGA-20-1686 TCGA-23-1024 TCGA-23-1028 TCGA-23-1032 
       23.05        19.07         2.93        15.39        49.41         2.24 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-2072 TCGA-23-2643 
        4.57        33.30        86.01       129.96        24.95         4.70 
TCGA-24-0966 TCGA-24-0970 TCGA-24-0979 TCGA-24-0980 TCGA-24-1413 TCGA-24-1416 
        7.63        11.64        41.56         7.66         6.31         6.38 
TCGA-24-1417 TCGA-24-1434 TCGA-24-1436 TCGA-24-1464 TCGA-24-1466 TCGA-24-1550 
        7.82        18.67         8.55        12.46        45.14        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1557 TCGA-24-1563 TCGA-24-1565 TCGA-24-1842 
       51.91        41.39        39.88        47.70        10.26         8.32 
TCGA-24-1844 TCGA-24-1846 TCGA-24-1850 TCGA-24-1924 TCGA-24-1927 TCGA-24-1930 
        3.72         4.37         5.49        30.21        16.41        81.11 
TCGA-24-2023 TCGA-24-2033 TCGA-24-2038 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 
       44.84        18.48        44.48         0.79         0.36        47.54 
TCGA-24-2281 TCGA-24-2289 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1315 
       44.58        67.36        55.86        53.26        26.93        51.06 
TCGA-25-1320 TCGA-25-1322 TCGA-25-1329 TCGA-25-1623 TCGA-25-1627 TCGA-25-1628 
       36.95         2.99         2.96        18.58         0.36        20.58 
TCGA-25-1633 TCGA-25-1634 TCGA-25-2391 TCGA-25-2400 TCGA-25-2401 TCGA-25-2408 
       60.59        35.54        49.05        42.02         2.96        30.97 
TCGA-29-1688 TCGA-29-1694 TCGA-29-1695 TCGA-29-1698 TCGA-29-1702 TCGA-29-1711 
       78.87        38.53         0.79        68.28        18.64        34.62 
TCGA-29-1766 TCGA-29-1768 TCGA-29-2425 TCGA-29-2428 TCGA-30-1856 TCGA-30-1857 
       39.09        31.23        65.00        45.11        15.68         0.26 
TCGA-30-1869 TCGA-31-1946 TCGA-31-1959 TCGA-36-2529 TCGA-36-2534 TCGA-36-2537 
       51.39        30.18         2.17        35.05        29.79        25.91 
TCGA-36-2540 TCGA-36-2547 TCGA-36-2548 TCGA-36-2549 TCGA-42-2582 TCGA-42-2587 
       23.80        20.52        14.17         6.05        14.30         9.07 
TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1584 TCGA-57-1586 TCGA-57-1994 
        7.46         7.63        24.03        21.14        22.32        25.02 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2354 TCGA-61-1724 TCGA-61-1738 TCGA-61-1895 
       22.32       116.12        34.39        20.94        35.80         1.41 
TCGA-61-1903 TCGA-61-1907 TCGA-61-1913 TCGA-61-1914 TCGA-61-1919 TCGA-61-2009 
       13.02        31.30        48.92        56.58        38.17        39.85 
TCGA-61-2109 TCGA-61-2113 
       20.68        22.22 

$subtype2
TCGA-04-1332 TCGA-04-1335 TCGA-04-1337 TCGA-04-1346 TCGA-04-1361 TCGA-04-1525 
       41.00         1.81         2.01        65.49        32.52        38.37 
TCGA-04-1648 TCGA-04-1655 TCGA-09-0364 TCGA-09-0369 TCGA-09-1661 TCGA-09-1669 
       28.64        45.34        29.16        35.54        38.43        30.48 
TCGA-09-1672 TCGA-09-2043 TCGA-09-2055 TCGA-10-0925 TCGA-10-0927 TCGA-10-0937 
        5.85         6.15        26.93        54.31        81.47        15.12 
TCGA-13-0714 TCGA-13-0727 TCGA-13-0755 TCGA-13-0757 TCGA-13-0766 TCGA-13-0768 
        6.21        15.19         2.47        11.18        21.40         8.42 
TCGA-13-0800 TCGA-13-0803 TCGA-13-0805 TCGA-13-0807 TCGA-13-0888 TCGA-13-0889 
        8.12        43.82        35.28        13.61        70.39        61.81 
TCGA-13-0890 TCGA-13-0894 TCGA-13-0897 TCGA-13-0900 TCGA-13-0906 TCGA-13-0913 
       67.99        49.61        57.47        57.07        44.94        29.98 
TCGA-13-1405 TCGA-13-1411 TCGA-13-1412 TCGA-13-1481 TCGA-13-1483 TCGA-13-1487 
        7.36         4.21         5.33        87.06        29.39        22.39 
TCGA-13-1495 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1510 TCGA-13-2057 
       49.22        32.84        16.57         4.21         2.56        14.24 
TCGA-20-1682 TCGA-20-1687 TCGA-23-1023 TCGA-23-1027 TCGA-23-1029 TCGA-23-1114 
       27.48         2.66        40.54        31.73         8.81        68.68 
TCGA-23-1120 TCGA-23-1809 TCGA-23-2647 TCGA-24-0968 TCGA-24-0975 TCGA-24-0982 
        4.27         0.53         4.44        19.63        21.80        22.32 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 TCGA-24-1427 
       63.55        47.41         0.76         6.25         5.95         4.80 
TCGA-24-1467 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 TCGA-24-1553 TCGA-24-1562 
      105.99        57.37        64.27        56.58        58.09        45.50 
TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1847 TCGA-24-1849 TCGA-24-1923 
       88.34        48.33        38.24        11.28         5.75        22.65 
TCGA-24-2019 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 TCGA-24-2035 TCGA-24-2254 
        4.87        58.16       109.68        14.43        28.18        57.07 
TCGA-24-2271 TCGA-24-2293 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1321 
       31.63        16.64        37.02         1.02        34.98        33.96 
TCGA-25-1323 TCGA-25-1326 TCGA-25-1328 TCGA-25-1625 TCGA-25-1626 TCGA-25-1630 
       12.00        31.04        65.06        18.02        15.78         7.86 
TCGA-25-1631 TCGA-25-1635 TCGA-25-2042 TCGA-25-2396 TCGA-25-2398 TCGA-25-2404 
        0.30        51.22        13.02         3.02        45.01        29.00 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1696 TCGA-29-1705 TCGA-29-1710 TCGA-29-1763 
       47.18       101.75        33.70        18.25        29.23        66.77 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1778 TCGA-29-1783 
       24.36        22.52        17.29        11.84        14.93         7.20 
TCGA-29-2414 TCGA-29-2427 TCGA-29-2432 TCGA-29-2436 TCGA-30-1855 TCGA-30-1861 
       86.17        62.47        11.84         9.76         2.47        34.78 
TCGA-30-1862 TCGA-30-1867 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 
        6.08         1.18        24.26        30.05        48.79        45.57 
TCGA-31-1955 TCGA-31-1956 TCGA-36-1569 TCGA-36-1574 TCGA-36-1580 TCGA-36-2538 
       42.51        44.09        29.06        22.55        24.23        25.08 
TCGA-42-2588 TCGA-57-1585 TCGA-57-1993 TCGA-59-2352 TCGA-59-2355 TCGA-59-2363 
        9.44         1.74        25.05         9.40         2.14         5.39 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1730 TCGA-61-1736 TCGA-61-1899 TCGA-61-1901 
       11.11         8.05         4.34        48.79         8.42        11.41 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1998 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 
        9.07        34.13         5.52        17.98         3.98        30.61 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2095 TCGA-61-2097 TCGA-61-2101 
        1.18        45.96        45.40        61.64        60.62        55.50 
TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       15.88         6.35        31.07         8.58 

$subtype3
TCGA-04-1336 TCGA-04-1342 TCGA-04-1347 TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 
       49.15        18.51        63.06        21.57        63.98        49.28 
TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1369 TCGA-04-1371 TCGA-04-1514 
       33.67        76.54        71.47        21.11        82.36        56.55 
TCGA-04-1517 TCGA-04-1638 TCGA-04-1646 TCGA-04-1652 TCGA-04-1654 TCGA-09-0365 
       19.99        55.40        27.88        31.86        47.70         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-1659 TCGA-09-1662 TCGA-09-1666 TCGA-09-1667 
       57.73        17.95         9.96        89.33        57.57        61.87 
TCGA-09-1668 TCGA-09-1673 TCGA-09-1674 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 
       55.36         3.02         8.55        35.15         4.50       112.37 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-10-0926 TCGA-10-0930 
       71.11        63.09        39.75        20.91        25.91        33.24 
TCGA-10-0934 TCGA-10-0935 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0730 
        3.88        35.41        24.59        44.55        39.58        17.79 
TCGA-13-0751 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0765 TCGA-13-0794 
       55.17        34.06        32.25        31.04        28.57        30.35 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0802 TCGA-13-0804 TCGA-13-0883 TCGA-13-0887 
        8.71         7.79         8.19        35.28        68.91        66.64 
TCGA-13-0899 TCGA-13-0901 TCGA-13-0904 TCGA-13-0905 TCGA-13-0908 TCGA-13-0910 
       56.15        19.36        48.33        47.84        44.84        37.08 
TCGA-13-0912 TCGA-13-0916 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-1403 
       34.06        21.14        13.81         4.64         6.41        10.88 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1477 TCGA-13-1482 
        6.05         5.92         6.84         4.70        54.61        61.71 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       82.88        52.44        73.55        54.31        37.61        38.37 
TCGA-13-1506 TCGA-13-1507 TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-13-2066 
        4.41         4.77        12.23        10.78         8.75         9.70 
TCGA-20-0990 TCGA-20-0991 TCGA-20-1683 TCGA-20-1685 TCGA-23-1021 TCGA-23-1022 
       25.94        26.20        25.38        16.67        47.54        42.51 
TCGA-23-1026 TCGA-23-1030 TCGA-23-1031 TCGA-23-1107 TCGA-23-1109 TCGA-23-1110 
       26.83        29.10        18.87         0.30        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
        3.22        31.20         6.38        39.09        33.47        58.13 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
      115.89        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2645 TCGA-23-2649 TCGA-24-1103 TCGA-24-1418 TCGA-24-1419 TCGA-24-1424 
        4.50         3.81        54.08         7.99         7.86         6.02 
TCGA-24-1426 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1435 TCGA-24-1463 
        5.36        17.36        28.34        19.17        43.53        72.92 
TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1548 
        9.11         3.42         1.18        22.19        26.96        16.21 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1558 TCGA-24-1560 TCGA-24-1564 TCGA-24-1567 
       88.50        70.62        19.53        44.09        25.87        17.23 
TCGA-24-1603 TCGA-24-1843 TCGA-24-1845 TCGA-24-1920 TCGA-24-1928 TCGA-24-2020 
       90.15         3.48         3.81         9.80        11.05       151.99 
TCGA-24-2026 TCGA-24-2030 TCGA-24-2036 TCGA-24-2260 TCGA-24-2280 TCGA-24-2288 
       34.82        53.95        64.01        36.16        70.45         0.82 
TCGA-24-2290 TCGA-24-2295 TCGA-25-1312 TCGA-25-1314 TCGA-25-1319 TCGA-25-1324 
       36.23        33.11         1.02        31.99        65.00        34.03 
TCGA-25-1325 TCGA-25-1632 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 
       32.09        56.94        14.93        24.99        18.05        85.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 TCGA-25-2399 TCGA-25-2409 TCGA-29-1690 
        1.02        38.04        12.00        19.99        26.96        44.71 
TCGA-29-1697 TCGA-29-1699 TCGA-29-1701 TCGA-29-1703 TCGA-29-1707 TCGA-29-1761 
       31.17         0.53        16.90        59.67        41.95        17.00 
TCGA-29-1762 TCGA-29-1764 TCGA-29-1769 TCGA-29-1775 TCGA-29-1777 TCGA-29-1781 
       85.68        62.93        22.98        12.36        12.30         8.35 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2429 TCGA-29-2431 TCGA-29-2434 TCGA-30-1714 
        5.36        34.62         4.87        42.25        11.47        38.07 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1859 TCGA-30-1860 TCGA-30-1866 TCGA-30-1880 
       51.91        36.26        48.07        44.91        36.62        57.57 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-36-1568 TCGA-36-1570 TCGA-36-1571 
       18.77        22.45         6.71        28.73        21.53        22.85 
TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1581 TCGA-36-2530 
        8.55        30.05        25.74        27.85        24.69        33.01 
TCGA-36-2532 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2551 
       29.49        21.60         2.24        20.98        18.31        16.14 
TCGA-36-2552 TCGA-42-2589 TCGA-57-1583 TCGA-57-1992 TCGA-59-2348 TCGA-59-2349 
       11.47         7.56        11.38        28.96       180.16        80.12 
TCGA-59-2372 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 
       44.78        31.40        18.54        27.88        31.76        28.47 
TCGA-61-1737 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1900 TCGA-61-1910 
       44.84         2.43        33.67        43.69         5.79        37.02 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1995 TCGA-61-2000 TCGA-61-2012 
       67.73        43.43        15.75         1.97        14.50        30.64 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2096 TCGA-61-2098 
        4.80         4.77        51.72        71.74        58.39        65.49 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2110 TCGA-61-2111 TCGA-61-2610 
        6.48        76.83        44.52       125.72        51.91 

subtype1 subtype2 subtype3 
    0.26     0.30     0.30 
subtype1 subtype2 subtype3 
  129.96   109.68   180.16 
subtype1 subtype2 subtype3 
  25.465   24.705   30.050 
[1] "0.3 - 130.0 (25.5)" "0.3 - 109.7 (24.7)" "0.3 - 180.2 (30.1)"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [25] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [37] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [49] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [55] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [67] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [73] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [79] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[103] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[109] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[115] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[121] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[127] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[133] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[139] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[157] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[163] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[169] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[175] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[181] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[187] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[193] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[199] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[205] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[217] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[223] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[235] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[241] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[247] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[253] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[259] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[265] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[271] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[277] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[283] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[289] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[295] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[301] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[307] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[313] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[319] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[325] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[331] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[337] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[343] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[349] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[355] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[361] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[367] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[373] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[379] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[385] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[391] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[397] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[403] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[409] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[415] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[421] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[427] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[433] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[439] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[445] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[451] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[457] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[463] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[469] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[475] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[481] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[487] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[493] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[499] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[505] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[511] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[517] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[523] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[529] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[535] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[541] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[547] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[553] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [25] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [37] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [49] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [55] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [67] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [73] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [79] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[103] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[109] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[115] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[121] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[127] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[133] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[139] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[157] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[163] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[169] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[175] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[181] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[187] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[193] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[199] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[205] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[217] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[223] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[235] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[241] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[247] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[253] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[259] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[265] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[271] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[277] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[283] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[289] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[295] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[301] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[307] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[313] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[319] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[325] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[331] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[337] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[343] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[349] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[355] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[361] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[367] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[373] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[379] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[385] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[391] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[397] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[403] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[409] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[415] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[421] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[427] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[433] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[439] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[445] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[451] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[457] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[463] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[469] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[475] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[481] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[487] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[493] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[499] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[505] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[511] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[517] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[523] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[529] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[535] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[541] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[547] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[553] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [25] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
 [37] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [49] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [55] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [67] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [73] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [79] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[103] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[109] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[115] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[121] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[127] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[133] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[139] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[151] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[157] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[163] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[169] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[175] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[181] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[187] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[193] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[199] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[205] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[217] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[223] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[235] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[241] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[247] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[253] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[259] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[265] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[271] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[277] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[283] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[289] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[295] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[301] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[307] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[313] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[319] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[325] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[331] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[337] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[343] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[349] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[355] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[361] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[367] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[373] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[379] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[385] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[391] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[397] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[403] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[409] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[415] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[421] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[427] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[433] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[439] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[445] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[451] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[457] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[463] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[469] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[475] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[481] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[487] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[493] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[499] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[505] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[511] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[517] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
[523] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[529] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[535] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[541] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[547] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[553] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
D3V2, continuous
D3V3, multiclass
D3V4, continuous
D3V5, multiclass
D3V6, binary
          cls
clus         0   1
  subtype1   0 159
  subtype2   0 163
  subtype3   3 237
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0  159
  subtype2    0  163
  subtype3    3  237
     clus
vv    subtype1 subtype2 subtype3
  NO         0        0        3
  YES      159      163      237
D3V7, binary
          cls
clus         0   1
  subtype1 130  29
  subtype2 125  38
  subtype3 199  41
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  130   29
  subtype2  125   38
  subtype3  199   41
     clus
vv    subtype1 subtype2 subtype3
  NO       130      125      199
  YES       29       38       41

Clustering(4) Variable = MIR_CHIERARCHICAL
D4V1, survival
          sevent
clus2        0   1
  subtype1 102  95
  subtype2  85  99
  subtype3  78  98
subtype1 subtype2 subtype3 
     197      184      176 
subtype1 subtype2 subtype3 
      95       99       98 
$subtype1
TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 TCGA-04-1343 
        1.81        49.15         2.01        46.62        18.51        11.87 
TCGA-04-1346 TCGA-04-1347 TCGA-04-1349 TCGA-04-1356 TCGA-04-1365 TCGA-04-1367 
       65.49        63.06        21.57        49.28        76.54        71.47 
TCGA-04-1369 TCGA-04-1517 TCGA-04-1638 TCGA-04-1652 TCGA-04-1654 TCGA-09-0366 
       21.11        19.99        55.40        31.86        47.70        57.73 
TCGA-09-1662 TCGA-09-1666 TCGA-09-1667 TCGA-09-2051 TCGA-10-0934 TCGA-13-0714 
       89.33        57.57        61.87        63.09         3.88         6.21 
TCGA-13-0723 TCGA-13-0727 TCGA-13-0758 TCGA-13-0761 TCGA-13-0765 TCGA-13-0768 
       39.58        15.19        11.38        34.06        28.57         8.42 
TCGA-13-0792 TCGA-13-0797 TCGA-13-0799 TCGA-13-0804 TCGA-13-0883 TCGA-13-0885 
       36.72         8.71         7.79        35.28        68.91        91.40 
TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0893 TCGA-13-0897 TCGA-13-0901 
       66.64        61.81        67.99        43.36        57.47        19.36 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0908 TCGA-13-0910 TCGA-13-0916 TCGA-13-0923 
       48.33        47.84        44.84        37.08        21.14         6.41 
TCGA-13-1403 TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1481 TCGA-13-1482 
       10.88         5.92         4.70         4.21        87.06        61.71 
TCGA-13-1483 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 TCGA-13-1495 TCGA-13-1496 
       29.39        22.39        70.82        52.44        49.22         4.24 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       54.31        37.61        16.57         4.21         4.41         4.77 
TCGA-13-1510 TCGA-13-2061 TCGA-13-2065 TCGA-20-0991 TCGA-20-1682 TCGA-20-1687 
        2.56        10.78         8.75        26.20        27.48         2.66 
TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 TCGA-23-1031 TCGA-23-1032 TCGA-23-1107 
       40.54        26.83        31.73        18.87         2.24         0.30 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1118 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
        3.22        31.20        86.01        39.09        33.47        58.13 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2647 TCGA-24-0975 TCGA-24-1104 TCGA-24-1422 
       87.48        91.66         4.44        21.80        63.55         0.76 
TCGA-24-1423 TCGA-24-1425 TCGA-24-1428 TCGA-24-1430 TCGA-24-1435 TCGA-24-1463 
        6.25         5.95        17.36        28.34        43.53        72.92 
TCGA-24-1466 TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 TCGA-24-1548 TCGA-24-1549 
       45.14         9.11         3.42        22.19        16.21        56.58 
TCGA-24-1553 TCGA-24-1556 TCGA-24-1558 TCGA-24-1564 TCGA-24-1604 TCGA-24-1842 
       58.09        70.62        19.53        25.87        88.34         8.32 
TCGA-24-1845 TCGA-24-1847 TCGA-24-1849 TCGA-24-1923 TCGA-24-2026 TCGA-24-2030 
        3.81        11.28         5.75        22.65        34.82        53.95 
TCGA-24-2271 TCGA-24-2288 TCGA-24-2290 TCGA-24-2293 TCGA-25-1314 TCGA-25-1318 
       31.63         0.82        36.23        16.64        31.99        34.98 
TCGA-25-1319 TCGA-25-1325 TCGA-25-1328 TCGA-25-1635 TCGA-25-2042 TCGA-25-2397 
       65.00        32.09        65.06        51.22        13.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2404 TCGA-25-2409 TCGA-29-1690 TCGA-29-1691 
       45.01        19.99        29.00        26.96        44.71        47.18 
TCGA-29-1693 TCGA-29-1696 TCGA-29-1701 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
      101.75        33.70        16.90        18.25        41.95        29.23 
TCGA-29-1761 TCGA-29-1763 TCGA-29-1764 TCGA-29-1769 TCGA-29-1770 TCGA-29-1776 
       17.00        66.77        62.93        22.98        24.36        11.84 
TCGA-29-1781 TCGA-29-2427 TCGA-29-2432 TCGA-29-2434 TCGA-30-1855 TCGA-30-1860 
        8.35        62.47        11.84        11.47         2.47        44.91 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1880 TCGA-30-1892 TCGA-31-1944 
       34.78         6.08        36.62        57.57        48.79        45.57 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1956 TCGA-36-1568 TCGA-36-1574 
       18.77        22.45         6.71        44.09        28.73        22.55 
TCGA-36-1575 TCGA-36-1576 TCGA-36-1578 TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 
        8.55        30.05        27.85        24.69        33.01        29.49 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2545 TCGA-36-2551 TCGA-42-2588 TCGA-42-2589 
       21.60         2.24        18.31        16.14         9.44         7.56 
TCGA-57-1583 TCGA-59-2348 TCGA-59-2349 TCGA-61-1721 TCGA-61-1725 TCGA-61-1727 
       11.38       180.16        80.12        11.11        31.40        18.54 
TCGA-61-1733 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1904 TCGA-61-1910 
       31.76        44.84        35.80         2.43         9.07        37.02 
TCGA-61-2000 TCGA-61-2003 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2087 
       14.50         3.98        30.64         1.18        45.96         4.80 
TCGA-61-2092 TCGA-61-2101 TCGA-61-2111 TCGA-61-2610 TCGA-61-2614 
       51.72        55.50       125.72        51.91         8.58 

$subtype2
TCGA-04-1350 TCGA-04-1361 TCGA-04-1364 TCGA-04-1371 TCGA-04-1514 TCGA-04-1525 
       63.98        32.52        33.67        82.36        56.55        38.37 
TCGA-04-1542 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1655 TCGA-09-0364 
       84.20        27.88        28.64        64.64        45.34        29.16 
TCGA-09-0365 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1664 
        9.47        17.95        35.54         9.96        38.43        74.89 
TCGA-09-1669 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2045 TCGA-09-2048 
       30.48         8.55        97.55         6.15        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-10-0925 
      112.37        71.11        39.75        20.91        26.93        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0933 TCGA-10-0935 TCGA-10-0936 
       25.91        81.47        18.48        11.70        35.41        35.80 
TCGA-10-0938 TCGA-13-0717 TCGA-13-0720 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
       19.86        24.59        44.55        17.79        55.17         2.47 
TCGA-13-0757 TCGA-13-0762 TCGA-13-0794 TCGA-13-0800 TCGA-13-0802 TCGA-13-0888 
       11.18        32.25        30.35         8.12         8.19        70.39 
TCGA-13-0899 TCGA-13-0906 TCGA-13-0912 TCGA-13-0913 TCGA-13-0920 TCGA-13-0921 
       56.15        44.94        34.06        29.98        13.81         4.64 
TCGA-13-1407 TCGA-13-1409 TCGA-13-1477 TCGA-13-1489 TCGA-13-1492 TCGA-13-1499 
        6.05         6.84        54.61        82.88        73.55        38.37 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2066 TCGA-20-0990 TCGA-20-1684 TCGA-20-1685 
       14.24        12.23         9.70        25.94        19.07        16.67 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1029 TCGA-23-1030 TCGA-23-1109 TCGA-23-1110 
       47.54        42.51         8.81        29.10        51.35        54.51 
TCGA-23-1114 TCGA-23-1121 TCGA-23-1809 TCGA-23-2077 TCGA-23-2081 TCGA-23-2641 
       68.68         6.38         0.53       115.89        77.00         2.76 
TCGA-23-2645 TCGA-23-2649 TCGA-24-0966 TCGA-24-0979 TCGA-24-1103 TCGA-24-1413 
        4.50         3.81         7.63        41.56        54.08         6.31 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1424 TCGA-24-1426 TCGA-24-1431 TCGA-24-1471 
        7.99         7.86         6.02         5.36        19.17         1.18 
TCGA-24-1544 TCGA-24-1555 TCGA-24-1557 TCGA-24-1560 TCGA-24-1567 TCGA-24-1614 
       26.96        88.50        39.88        44.09        17.23        48.33 
TCGA-24-1616 TCGA-24-1844 TCGA-24-1920 TCGA-24-2019 TCGA-24-2020 TCGA-24-2027 
       38.24         3.72         9.80         4.87       151.99       109.68 
TCGA-24-2036 TCGA-24-2280 TCGA-24-2295 TCGA-25-1312 TCGA-25-1315 TCGA-25-1316 
       64.01        70.45        33.11         1.02        51.06        37.02 
TCGA-25-1317 TCGA-25-1321 TCGA-25-1323 TCGA-25-1324 TCGA-25-1625 TCGA-25-1630 
        1.02        33.96        12.00        34.03        18.02         7.86 
TCGA-25-1632 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 
       56.94        35.54        14.93        24.99        18.05        85.05 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2400 TCGA-29-1695 TCGA-29-1697 TCGA-29-1702 
       38.04         3.02        42.02         0.79        31.17        18.64 
TCGA-29-1703 TCGA-29-1762 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1777 
       59.67        85.68        22.52        17.29        12.36        12.30 
TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2429 
        7.20         5.36        34.62        86.17        65.00         4.87 
TCGA-29-2431 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1859 TCGA-30-1869 
       42.25        38.07        51.91        36.26        48.07        51.39 
TCGA-31-1955 TCGA-36-1570 TCGA-36-1571 TCGA-36-1577 TCGA-36-2538 TCGA-36-2544 
       42.51        21.53        22.85        25.74        25.08        20.98 
TCGA-36-2549 TCGA-36-2552 TCGA-42-2582 TCGA-57-1584 TCGA-57-1586 TCGA-57-1992 
        6.05        11.47        14.30        21.14        22.32        28.96 
TCGA-57-1993 TCGA-59-2352 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1724 
       25.05         9.40         2.14         5.39        44.78        20.94 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1734 TCGA-61-1736 TCGA-61-1741 TCGA-61-1743 
       27.88         4.34        28.47        48.79        33.67        43.69 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1906 TCGA-61-1917 TCGA-61-1918 
        8.42         5.79        11.41        34.13        43.43        15.75 
TCGA-61-2008 TCGA-61-2018 TCGA-61-2088 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 
       30.61        45.40         4.77        61.64        58.39        60.62 
TCGA-61-2098 TCGA-61-2102 TCGA-61-2104 TCGA-61-2110 
       65.49         6.48        76.83        44.52 

$subtype3
TCGA-04-1331 TCGA-04-1332 TCGA-04-1348 TCGA-04-1351 TCGA-04-1362 TCGA-04-1516 
       40.24        41.00        48.76        65.46        44.32        41.59 
TCGA-04-1530 TCGA-04-1644 TCGA-04-1651 TCGA-09-1665 TCGA-09-1668 TCGA-09-1670 
      119.08        48.89        36.23        41.59        55.36        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-2044 TCGA-09-2056 TCGA-10-0930 TCGA-10-0931 
        5.85         3.02         6.12        12.46        33.24        32.28 
TCGA-10-0937 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0760 TCGA-13-0764 
       15.12         2.73        12.39        31.07        11.54        31.04 
TCGA-13-0766 TCGA-13-0791 TCGA-13-0793 TCGA-13-0795 TCGA-13-0801 TCGA-13-0803 
       21.40        38.93        28.70        19.56         8.28        43.82 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0884 TCGA-13-0886 TCGA-13-0891 TCGA-13-0894 
       35.28        13.61       107.18        74.27        69.01        49.61 
TCGA-13-0900 TCGA-13-0903 TCGA-13-0911 TCGA-13-0919 TCGA-13-0924 TCGA-13-1404 
       57.07        47.38        27.68        14.89         6.08         6.61 
TCGA-13-1405 TCGA-13-1412 TCGA-13-1484 TCGA-13-1485 TCGA-13-1494 TCGA-13-1500 
        7.36         5.33        98.04        20.68        38.17        13.97 
TCGA-13-1501 TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2060 TCGA-13-2071 
       32.84         4.14         3.88         3.09         8.58         6.28 
TCGA-20-0987 TCGA-20-1683 TCGA-20-1686 TCGA-23-1024 TCGA-23-1028 TCGA-23-1116 
       23.05        25.38         2.93        15.39        49.41         4.57 
TCGA-23-1117 TCGA-23-1119 TCGA-23-1120 TCGA-23-2072 TCGA-23-2084 TCGA-23-2643 
       33.30       129.96         4.27        24.95        49.84         4.70 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0980 TCGA-24-0982 TCGA-24-1105 TCGA-24-1416 
       19.63        11.64         7.66        22.32        47.41         6.38 
TCGA-24-1417 TCGA-24-1427 TCGA-24-1434 TCGA-24-1436 TCGA-24-1464 TCGA-24-1467 
        7.82         4.80        18.67         8.55        12.46       105.99 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1562 
       57.37        64.27        41.06        51.91        41.39        45.50 
TCGA-24-1563 TCGA-24-1565 TCGA-24-1603 TCGA-24-1843 TCGA-24-1846 TCGA-24-1850 
       47.70        10.26        90.15         3.48         4.37         5.49 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2023 TCGA-24-2024 
       30.21        16.41        11.05        81.11        44.84        58.16 
TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
       14.43        18.48        28.18        44.48        57.07        36.16 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2281 TCGA-24-2289 TCGA-24-2297 
        0.79         0.36        47.54        44.58        67.36        55.86 
TCGA-24-2298 TCGA-25-1313 TCGA-25-1320 TCGA-25-1322 TCGA-25-1326 TCGA-25-1329 
       53.26        26.93        36.95         2.99        31.04         2.96 
TCGA-25-1623 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1631 TCGA-25-1633 
       18.58        15.78         0.36        20.58         0.30        60.59 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2401 TCGA-25-2408 TCGA-29-1688 TCGA-29-1694 
       49.05         1.02         2.96        30.97        78.87        38.53 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1711 TCGA-29-1766 TCGA-29-1768 TCGA-29-1778 
       68.28         0.53        34.62        39.09        31.23        14.93 
TCGA-29-2428 TCGA-29-2436 TCGA-30-1856 TCGA-30-1857 TCGA-30-1867 TCGA-30-1887 
       45.11         9.76        15.68         0.26         1.18        24.26 
TCGA-30-1891 TCGA-31-1946 TCGA-31-1959 TCGA-36-1569 TCGA-36-1580 TCGA-36-2529 
       30.05        30.18         2.17        29.06        24.23        35.05 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2540 TCGA-36-2547 TCGA-36-2548 TCGA-42-2587 
       29.79        25.91        23.80        20.52        14.17         9.07 
TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1585 TCGA-57-1994 TCGA-59-2350 
        7.46         7.63        24.03         1.74        25.02        22.32 
TCGA-59-2351 TCGA-59-2354 TCGA-61-1722 TCGA-61-1895 TCGA-61-1903 TCGA-61-1907 
      116.12        34.39         8.05         1.41        13.02        31.30 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       48.92        56.58        67.73        38.17         1.97         5.52 
TCGA-61-2002 TCGA-61-2009 TCGA-61-2094 TCGA-61-2109 TCGA-61-2113 TCGA-61-2611 
       17.98        39.85        71.74        20.68        22.22        15.88 
TCGA-61-2612 TCGA-61-2613 
        6.35        31.07 

subtype1 subtype2 subtype3 
    0.30     0.53     0.26 
subtype1 subtype2 subtype3 
  180.16   151.99   129.96 
subtype1 subtype2 subtype3 
  29.000   29.030   24.605 
[1] "0.3 - 180.2 (29.0)" "0.5 - 152.0 (29.0)" "0.3 - 130.0 (24.6)"
  [1] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [43] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [67] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [73] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [85] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [97] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[103] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[115] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[121] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[127] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[133] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[139] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[145] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[169] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[175] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[181] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[187] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[193] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[205] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[211] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[217] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[223] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[229] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[235] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[241] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[247] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[253] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[259] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[265] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[271] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[277] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[283] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[289] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[295] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[301] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[307] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[313] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[319] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[325] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[331] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[337] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[343] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[349] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[355] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[361] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[367] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[373] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[379] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[385] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[391] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[397] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[403] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[409] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[415] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[421] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[427] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[433] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[439] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[445] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[451] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[457] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[463] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[469] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[475] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[481] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[487] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[493] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[499] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[505] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[511] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[517] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[523] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[529] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[535] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[541] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[547] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[553] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
  [1] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [43] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [67] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [73] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [85] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [97] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[103] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[115] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[121] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[127] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[133] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[139] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[145] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[169] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[175] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[181] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[187] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[193] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[205] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[211] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[217] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[223] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[229] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[235] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[241] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[247] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[253] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[259] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[265] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[271] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[277] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[283] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[289] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[295] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[301] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[307] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[313] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[319] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[325] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[331] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[337] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[343] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[349] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[355] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[361] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[367] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[373] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[379] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[385] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[391] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[397] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[403] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[409] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[415] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[421] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[427] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[433] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[439] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[445] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[451] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[457] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[463] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[469] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[475] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[481] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[487] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[493] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[499] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[505] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[511] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[517] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[523] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[529] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[535] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[541] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[547] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[553] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
  [1] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [43] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [67] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [73] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [85] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [97] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[103] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[115] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[121] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[127] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[133] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[139] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[145] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[163] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[169] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[175] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[181] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[187] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[193] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[205] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[211] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[217] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[223] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[229] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[235] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[241] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[247] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[253] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[259] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[265] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[271] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[277] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[283] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[289] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[295] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[301] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[307] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[313] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[319] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[325] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[331] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[337] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[343] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[349] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[355] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[361] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[367] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[373] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[379] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[385] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[391] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[397] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[403] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[409] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[415] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[421] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[427] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[433] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[439] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[445] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[451] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[457] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[463] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[469] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[475] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[481] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[487] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[493] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[499] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[505] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[511] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[517] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[523] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[529] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[535] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[541] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[547] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[553] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
D4V2, continuous
D4V3, multiclass
D4V4, continuous
D4V5, multiclass
D4V6, binary
          cls
clus         0   1
  subtype1   1 199
  subtype2   2 184
  subtype3   0 176
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1  199
  subtype2    2  184
  subtype3    0  176
     clus
vv    subtype1 subtype2 subtype3
  NO         1        2        0
  YES      199      184      176
D4V7, binary
          cls
clus         0   1
  subtype1 164  36
  subtype2 146  40
  subtype3 144  32
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  164   36
  subtype2  146   40
  subtype3  144   32
     clus
vv    subtype1 subtype2 subtype3
  NO       164      146      144
  YES       36       40       32

Clustering(5) Variable = CN_CNMF
D5V1, survival
          sevent
clus2        0   1
  subtype1  69  86
  subtype2 100  94
  subtype3  94 105
subtype1 subtype2 subtype3 
     155      194      199 
subtype1 subtype2 subtype3 
      86       94      105 
$subtype1
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1337 TCGA-04-1350 TCGA-04-1351 
       40.24        41.00         1.81         2.01        63.98        65.46 
TCGA-04-1367 TCGA-04-1514 TCGA-04-1530 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 
       71.47        56.55       119.08        55.40        48.89        28.64 
TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0369 TCGA-09-1659 TCGA-09-1664 
       29.16         9.47        57.73        35.54         9.96        74.89 
TCGA-09-1666 TCGA-09-1672 TCGA-09-2045 TCGA-09-2048 TCGA-09-2055 TCGA-09-2056 
       57.57         5.85        35.15         4.50        26.93        12.46 
TCGA-10-0926 TCGA-10-0930 TCGA-10-0934 TCGA-10-0935 TCGA-13-0714 TCGA-13-0768 
       25.91        33.24         3.88        35.41         6.21         8.42 
TCGA-13-0793 TCGA-13-0799 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0886 
       28.70         7.79        43.82        35.28        35.28        74.27 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0899 TCGA-13-0910 TCGA-13-0911 
       61.81        67.99        69.01        56.15        37.08        27.68 
TCGA-13-0912 TCGA-13-0919 TCGA-13-0921 TCGA-13-1405 TCGA-13-1411 TCGA-13-1477 
       34.06        14.89         4.64         7.36         4.21        54.61 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1494 TCGA-13-1499 TCGA-13-1500 
       98.04        20.68        22.39        38.17        38.37        13.97 
TCGA-13-1507 TCGA-13-1510 TCGA-20-0987 TCGA-20-0991 TCGA-20-0996 TCGA-23-1030 
        4.77         2.56        23.05        26.20        72.20        29.10 
TCGA-23-1032 TCGA-23-1110 TCGA-23-1113 TCGA-23-1116 TCGA-23-1118 TCGA-23-2072 
        2.24        54.51        31.20         4.57        86.01        24.95 
TCGA-23-2078 TCGA-24-0966 TCGA-24-0970 TCGA-24-0975 TCGA-24-1105 TCGA-24-1416 
       87.48         7.63        11.64        21.80        47.41         6.38 
TCGA-24-1430 TCGA-24-1434 TCGA-24-1464 TCGA-24-1467 TCGA-24-1471 TCGA-24-1545 
       28.34        18.67        12.46       105.99         1.18        57.37 
TCGA-24-1546 TCGA-24-1551 TCGA-24-1555 TCGA-24-1560 TCGA-24-1562 TCGA-24-1564 
       64.27        51.91        88.50        44.09        45.50        25.87 
TCGA-24-1565 TCGA-24-1603 TCGA-24-1844 TCGA-24-1849 TCGA-24-1923 TCGA-24-2024 
       10.26        90.15         3.72         5.75        22.65        58.16 
TCGA-24-2029 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2271 TCGA-24-2280 
       14.43        28.18        64.01        44.48        31.63        70.45 
TCGA-24-2281 TCGA-24-2293 TCGA-25-1316 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
       44.58        16.64        37.02        18.58        18.02        15.78 
TCGA-25-1628 TCGA-25-1633 TCGA-25-2042 TCGA-25-2399 TCGA-25-2408 TCGA-29-1690 
       20.58        60.59        13.02        19.99        30.97        44.71 
TCGA-29-1707 TCGA-29-1762 TCGA-29-1771 TCGA-29-1785 TCGA-29-2427 TCGA-29-2436 
       41.95        85.68        22.52        34.62        62.47         9.76 
TCGA-30-1853 TCGA-30-1859 TCGA-30-1880 TCGA-30-1892 TCGA-31-1950 TCGA-36-1568 
       36.26        48.07        57.57        48.79        18.77        28.73 
TCGA-36-1569 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 TCGA-36-2532 TCGA-36-2537 
       29.06        30.05        25.74        24.23        29.49        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2543 TCGA-42-2587 TCGA-42-2590 TCGA-59-2349 
       25.08        23.80         2.24         9.07         7.46        80.12 
TCGA-59-2350 TCGA-59-2354 TCGA-59-2355 TCGA-61-1721 TCGA-61-1727 TCGA-61-1734 
       22.32        34.39         2.14        11.11        18.54        28.47 
TCGA-61-1736 TCGA-61-1911 TCGA-61-1995 TCGA-61-1998 TCGA-61-2002 TCGA-61-2009 
       48.79        42.48         1.97         5.52        17.98        39.85 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
        1.18        45.96        45.40        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2110 TCGA-61-2611 TCGA-61-2613 
       58.39        60.62        44.52        15.88        31.07 

$subtype2
TCGA-04-1336 TCGA-04-1338 TCGA-04-1349 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 
       49.15        46.62        21.57        49.28        32.52        44.32 
TCGA-04-1365 TCGA-04-1536 TCGA-04-1651 TCGA-04-1654 TCGA-09-0367 TCGA-09-1662 
       76.54        29.06        36.23        47.70        17.95        89.33 
TCGA-09-1665 TCGA-09-1668 TCGA-09-1669 TCGA-09-1675 TCGA-09-2051 TCGA-10-0925 
       41.59        55.36        30.48        97.55        63.09        54.31 
TCGA-10-0928 TCGA-10-0931 TCGA-10-0937 TCGA-13-0720 TCGA-13-0725 TCGA-13-0726 
       18.48        32.28        15.12        44.55        12.39        31.07 
TCGA-13-0755 TCGA-13-0758 TCGA-13-0761 TCGA-13-0766 TCGA-13-0792 TCGA-13-0797 
        2.47        11.38        34.06        21.40        36.72         8.71 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0883 TCGA-13-0884 TCGA-13-0887 TCGA-13-0893 
        8.28         8.19        68.91       107.18        66.64        43.36 
TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       57.47        57.07        19.36        47.38        48.33        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0913 TCGA-13-0916 TCGA-13-0920 TCGA-13-0924 
       44.94        44.84        29.98        21.14        13.81         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1412 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
       10.88         6.61         5.33        87.06        61.71        29.39 
TCGA-13-1488 TCGA-13-1497 TCGA-13-1501 TCGA-13-1505 TCGA-13-1509 TCGA-13-1512 
       70.82        54.31        32.84         4.21         4.14         3.09 
TCGA-13-2059 TCGA-13-2065 TCGA-13-2071 TCGA-20-1682 TCGA-20-1685 TCGA-20-1686 
       12.23         8.75         6.28        27.48        16.67         2.93 
TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
        2.66        42.51        40.54        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1031 TCGA-23-1109 TCGA-23-1117 TCGA-23-1119 TCGA-23-1120 
        8.81        18.87        51.35        33.30       129.96         4.27 
TCGA-23-1122 TCGA-23-1124 TCGA-23-2077 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 
       39.09        58.13       115.89        91.66        77.00        49.84 
TCGA-23-2641 TCGA-23-2645 TCGA-24-0979 TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 
        2.76         4.50        41.56         7.66        54.08        63.55 
TCGA-24-1417 TCGA-24-1419 TCGA-24-1423 TCGA-24-1425 TCGA-24-1427 TCGA-24-1428 
        7.82         7.86         6.25         5.95         4.80        17.36 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1466 TCGA-24-1470 TCGA-24-1474 
       43.53         8.55        72.92        45.14         3.42        22.19 
TCGA-24-1553 TCGA-24-1556 TCGA-24-1557 TCGA-24-1563 TCGA-24-1567 TCGA-24-1604 
       58.09        70.62        39.88        47.70        17.23        88.34 
TCGA-24-1842 TCGA-24-1846 TCGA-24-1847 TCGA-24-1920 TCGA-24-1924 TCGA-24-1927 
        8.32         4.37        11.28         9.80        30.21        16.41 
TCGA-24-1928 TCGA-24-2026 TCGA-24-2030 TCGA-24-2254 TCGA-24-2262 TCGA-24-2267 
       11.05        34.82        53.95        57.07         0.36        47.54 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2297 TCGA-25-1313 TCGA-25-1314 TCGA-25-1322 
       67.36        36.23        55.86        26.93        31.99         2.99 
TCGA-25-1630 TCGA-25-1632 TCGA-25-1878 TCGA-25-2391 TCGA-25-2392 TCGA-25-2397 
        7.86        56.94        85.05        49.05         1.02        12.00 
TCGA-25-2401 TCGA-25-2409 TCGA-29-1688 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 
        2.96        26.96        78.87       101.75        38.53        33.70 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1705 TCGA-29-1764 TCGA-29-1768 TCGA-29-1769 
       16.90        18.64        18.25        62.93        31.23        22.98 
TCGA-29-1770 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1784 TCGA-29-2425 
       24.36        11.84        12.30         8.35         5.36        65.00 
TCGA-29-2432 TCGA-30-1718 TCGA-30-1857 TCGA-30-1860 TCGA-30-1861 TCGA-30-1891 
       11.84        51.91         0.26        44.91        34.78        30.05 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1956 TCGA-31-1959 TCGA-36-1570 TCGA-36-1574 
       45.57        30.18        44.09         2.17        21.53        22.55 
TCGA-36-1578 TCGA-36-2530 TCGA-36-2534 TCGA-36-2542 TCGA-36-2544 TCGA-36-2545 
       27.85        33.01        29.79        21.60        20.98        18.31 
TCGA-36-2549 TCGA-42-2582 TCGA-42-2588 TCGA-42-2591 TCGA-57-1582 TCGA-57-1584 
        6.05        14.30         9.44         7.63        24.03        21.14 
TCGA-57-1585 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1737 TCGA-61-1738 
        1.74         8.05        20.94        31.40        44.84        35.80 
TCGA-61-1740 TCGA-61-1743 TCGA-61-1895 TCGA-61-1901 TCGA-61-1903 TCGA-61-1907 
        2.43        43.69         1.41        11.41        13.02        31.30 
TCGA-61-1910 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-2008 TCGA-61-2104 
       37.02        48.92        56.58        67.73        30.61        76.83 
TCGA-61-2109 TCGA-61-2610 
       20.68        51.91 

$subtype3
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1364 
       18.51        11.87        65.49        63.06        48.76        33.67 
TCGA-04-1371 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1542 TCGA-04-1646 
       82.36        41.59        19.99        38.37        84.20        27.88 
TCGA-04-1649 TCGA-04-1652 TCGA-04-1655 TCGA-09-1661 TCGA-09-1667 TCGA-09-1670 
       64.64        31.86        45.34        38.43        61.87        17.98 
TCGA-09-1673 TCGA-09-1674 TCGA-09-2043 TCGA-09-2044 TCGA-09-2049 TCGA-09-2050 
        3.02         8.55         6.15         6.12       112.37        71.11 
TCGA-09-2053 TCGA-09-2054 TCGA-10-0927 TCGA-10-0933 TCGA-10-0936 TCGA-10-0938 
       39.75        20.91        81.47        11.70        35.80        19.86 
TCGA-13-0717 TCGA-13-0723 TCGA-13-0724 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 
       24.59        39.58         2.73        15.19        17.79        55.17 
TCGA-13-0757 TCGA-13-0760 TCGA-13-0762 TCGA-13-0764 TCGA-13-0791 TCGA-13-0794 
       11.18        11.54        32.25        31.04        38.93        30.35 
TCGA-13-0795 TCGA-13-0800 TCGA-13-0807 TCGA-13-0885 TCGA-13-0888 TCGA-13-0923 
       19.56         8.12        13.61        91.40        70.39         6.41 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1489 TCGA-13-1491 
        6.05         5.92         6.84         4.70        82.88        52.44 
TCGA-13-1492 TCGA-13-1495 TCGA-13-1496 TCGA-13-1498 TCGA-13-1504 TCGA-13-1506 
       73.55        49.22         4.24        37.61        16.57         4.41 
TCGA-13-1511 TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 TCGA-20-0990 TCGA-20-1683 
        3.88        14.24         8.58        10.78        25.94        25.38 
TCGA-20-1684 TCGA-23-1021 TCGA-23-1024 TCGA-23-1111 TCGA-23-1114 TCGA-23-1121 
       19.07        47.54        15.39         3.22        68.68         6.38 
TCGA-23-1123 TCGA-23-1809 TCGA-23-2643 TCGA-24-0968 TCGA-24-0982 TCGA-24-1413 
       33.47         0.53         4.70        19.63        22.32         6.31 
TCGA-24-1418 TCGA-24-1422 TCGA-24-1424 TCGA-24-1426 TCGA-24-1431 TCGA-24-1469 
        7.99         0.76         6.02         5.36        19.17         9.11 
TCGA-24-1544 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1552 TCGA-24-1558 
       26.96        16.21        56.58        41.06        41.39        19.53 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 TCGA-24-1845 TCGA-24-1850 TCGA-24-1930 
       48.33        38.24         3.48         3.81         5.49        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2027 TCGA-24-2033 TCGA-24-2260 
        4.87       151.99        44.84       109.68        18.48        36.16 
TCGA-24-2261 TCGA-24-2288 TCGA-24-2295 TCGA-24-2298 TCGA-25-1312 TCGA-25-1315 
        0.79         0.82        33.11        53.26         1.02        51.06 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1323 
        1.02        34.98        65.00        36.95        33.96        12.00 
TCGA-25-1329 TCGA-25-1627 TCGA-25-1631 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        2.96         0.36         0.30        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-2393 TCGA-25-2396 TCGA-25-2398 TCGA-25-2400 
       24.99        18.05        38.04         3.02        45.01        42.02 
TCGA-25-2404 TCGA-29-1691 TCGA-29-1695 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 
       29.00        47.18         0.79        31.17        68.28         0.53 
TCGA-29-1703 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1763 TCGA-29-1766 
       59.67        29.23        34.62        17.00        66.77        39.09 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1778 TCGA-29-1783 TCGA-29-2414 TCGA-29-2428 
       17.29        12.36        14.93         7.20        86.17        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2434 TCGA-30-1714 TCGA-30-1855 TCGA-30-1856 
        4.87        42.25        11.47        38.07         2.47        15.68 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1887 TCGA-31-1951 TCGA-31-1953 
        6.08        36.62         1.18        24.26        22.45         6.71 
TCGA-31-1955 TCGA-36-1571 TCGA-36-1575 TCGA-36-1581 TCGA-36-2529 TCGA-36-2547 
       42.51        22.85         8.55        24.69        35.05        20.52 
TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2589 TCGA-57-1583 TCGA-57-1586 
       14.17        16.14        11.47         7.56        11.38        22.32 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2351 TCGA-59-2352 
       28.96        25.05        25.02       180.16       116.12         9.40 
TCGA-59-2363 TCGA-59-2372 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1741 
        5.39        44.78        27.88         4.34        31.76        33.67 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1904 TCGA-61-1906 TCGA-61-1917 TCGA-61-1918 
        8.42         5.79         9.07        34.13        43.43        15.75 
TCGA-61-1919 TCGA-61-2000 TCGA-61-2003 TCGA-61-2012 TCGA-61-2087 TCGA-61-2088 
       38.17        14.50         3.98        30.64         4.80         4.77 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2111 TCGA-61-2113 TCGA-61-2612 
       65.49        55.50         6.48       125.72        22.22         6.35 
TCGA-61-2614 
        8.58 

subtype1 subtype2 subtype3 
    1.18     0.26     0.30 
subtype1 subtype2 subtype3 
  119.08   129.96   180.16 
subtype1 subtype2 subtype3 
  29.490   30.195   22.320 
[1] "1.2 - 119.1 (29.5)" "0.3 - 130.0 (30.2)" "0.3 - 180.2 (22.3)"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [13] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [25] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [37] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [49] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [67] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [73] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [79] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [85] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[109] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[115] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[139] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[151] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[157] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[163] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[175] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[187] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[193] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[205] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[211] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[217] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[235] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[241] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[247] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[253] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[259] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[265] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[271] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[277] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[283] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[289] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[295] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[301] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[307] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[313] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[319] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[325] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[331] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[337] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[343] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[349] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[355] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[361] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[367] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[373] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[379] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[385] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[391] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[397] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[403] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[409] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[415] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[421] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[427] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[433] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[439] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[445] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[451] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[457] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[463] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[469] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[475] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[481] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[487] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[493] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[499] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[505] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[511] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[517] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[523] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[529] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[535] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[541] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[547] "subtype1" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [13] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [25] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [37] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [49] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [67] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [73] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [79] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [85] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[109] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[115] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[139] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[151] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[157] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[163] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[175] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[187] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[193] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[205] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[211] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[217] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[235] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[241] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[247] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[253] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[259] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[265] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[271] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[277] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[283] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[289] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[295] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[301] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[307] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[313] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[319] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[325] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[331] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[337] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[343] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[349] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[355] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[361] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[367] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[373] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[379] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[385] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[391] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[397] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[403] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[409] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[415] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[421] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[427] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[433] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[439] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[445] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[451] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[457] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[463] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[469] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[475] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[481] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[487] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[493] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[499] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[505] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[511] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[517] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[523] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[529] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[535] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[541] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[547] "subtype1" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [13] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [25] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [37] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [43] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [49] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
 [61] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [67] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [73] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [79] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [85] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[109] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[115] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[139] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
[145] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[151] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[157] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[163] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[175] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[187] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[193] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[205] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[211] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[217] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[235] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[241] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[247] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[253] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[259] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[265] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[271] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[277] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[283] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[289] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[295] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[301] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[307] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[313] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[319] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[325] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[331] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[337] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[343] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[349] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[355] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[361] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[367] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[373] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[379] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[385] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[391] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[397] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[403] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[409] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[415] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[421] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[427] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[433] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[439] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[445] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[451] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[457] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[463] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[469] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[475] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[481] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[487] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[493] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[499] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[505] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[511] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[517] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[523] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[529] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[535] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[541] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[547] "subtype1" "subtype3"
D5V2, continuous
D5V3, multiclass
D5V4, continuous
D5V5, multiclass
D5V6, binary
          cls
clus         0   1
  subtype1   1 156
  subtype2   0 195
  subtype3   2 200
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1  156
  subtype2    0  195
  subtype3    2  200
     clus
vv    subtype1 subtype2 subtype3
  NO         1        0        2
  YES      156      195      200
D5V7, binary
          cls
clus         0   1
  subtype1 128  29
  subtype2 167  28
  subtype3 155  47
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  128   29
  subtype2  167   28
  subtype3  155   47
     clus
vv    subtype1 subtype2 subtype3
  NO       128      167      155
  YES       29       28       47

Clustering(6) Variable = METHLYATION_CNMF
D6V1, survival
          sevent
clus2       0  1
  subtype1 54 48
  subtype2 57 78
  subtype3 70 80
  subtype4 72 84
subtype1 subtype2 subtype3 subtype4 
     102      135      150      156 
subtype1 subtype2 subtype3 subtype4 
      48       78       80       84 
$subtype1
TCGA-04-1331 TCGA-04-1337 TCGA-04-1342 TCGA-04-1348 TCGA-04-1365 TCGA-04-1516 
       40.24         2.01        18.51        48.76        76.54        41.59 
TCGA-04-1651 TCGA-09-0366 TCGA-09-1665 TCGA-09-2044 TCGA-09-2051 TCGA-09-2054 
       36.23        57.73        41.59         6.12        63.09        20.91 
TCGA-09-2055 TCGA-10-0930 TCGA-10-0937 TCGA-13-0765 TCGA-13-0795 TCGA-13-0797 
       26.93        33.24        15.12        28.57        19.56         8.71 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0885 TCGA-13-0889 TCGA-13-0890 
       35.28        35.28        13.61        91.40        61.81        67.99 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0903 TCGA-13-0919 TCGA-13-1404 TCGA-13-1408 
       56.15        57.07        47.38        14.89         6.61         5.92 
TCGA-13-1412 TCGA-13-1481 TCGA-13-1483 TCGA-13-1487 TCGA-13-1488 TCGA-13-1501 
        5.33        87.06        29.39        22.39        70.82        32.84 
TCGA-13-1504 TCGA-13-1506 TCGA-13-1509 TCGA-13-1512 TCGA-13-2059 TCGA-13-2066 
       16.57         4.41         4.14         3.09        12.23         9.70 
TCGA-20-0987 TCGA-20-1682 TCGA-20-1685 TCGA-20-1687 TCGA-23-1023 TCGA-23-1027 
       23.05        27.48        16.67         2.66        40.54        31.73 
TCGA-23-1029 TCGA-23-1032 TCGA-23-1116 TCGA-23-1118 TCGA-23-1119 TCGA-23-1809 
        8.81         2.24         4.57        86.01       129.96         0.53 
TCGA-23-2081 TCGA-23-2084 TCGA-23-2647 TCGA-24-0968 TCGA-24-1103 TCGA-24-1413 
       77.00        49.84         4.44        19.63        54.08         6.31 
TCGA-24-1428 TCGA-24-1435 TCGA-24-1470 TCGA-24-1550 TCGA-24-1553 TCGA-24-1844 
       17.36        43.53         3.42        41.06        58.09         3.72 
TCGA-24-1846 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2030 TCGA-24-2289 
        4.37        11.05        81.11         4.87        53.95        67.36 
TCGA-24-2293 TCGA-25-1315 TCGA-25-1321 TCGA-25-1325 TCGA-25-1326 TCGA-25-1329 
       16.64        51.06        33.96        32.09        31.04         2.96 
TCGA-25-1623 TCGA-25-1627 TCGA-25-1635 TCGA-29-1698 TCGA-29-1761 TCGA-29-1763 
       18.58         0.36        51.22        68.28        17.00        66.77 
TCGA-29-1777 TCGA-30-1860 TCGA-30-1867 TCGA-31-1946 TCGA-31-1953 TCGA-31-1959 
       12.30        44.91         1.18        30.18         6.71         2.17 
TCGA-36-1570 TCGA-36-1581 TCGA-57-1582 TCGA-57-1585 TCGA-57-1993 TCGA-61-1737 
       21.53        24.69        24.03         1.74        25.05        44.84 
TCGA-61-1740 TCGA-61-2000 TCGA-61-2003 TCGA-61-2012 TCGA-61-2016 TCGA-61-2611 
        2.43        14.50         3.98        30.64         1.18        15.88 

$subtype2
TCGA-04-1332 TCGA-04-1338 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1350 
       41.00        46.62        11.87        65.49        63.06        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1362 TCGA-04-1364 TCGA-04-1371 TCGA-04-1514 
       65.46        49.28        44.32        33.67        82.36        56.55 
TCGA-04-1644 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0369 TCGA-09-1659 
       48.89        45.34        29.16         9.47        35.54         9.96 
TCGA-09-1669 TCGA-09-1673 TCGA-09-1674 TCGA-09-2048 TCGA-09-2049 TCGA-09-2053 
       30.48         3.02         8.55         4.50       112.37        39.75 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0933 TCGA-10-0935 TCGA-10-0938 TCGA-13-0717 
       25.91        81.47        11.70        35.41        19.86        24.59 
TCGA-13-0724 TCGA-13-0727 TCGA-13-0730 TCGA-13-0757 TCGA-13-0762 TCGA-13-0800 
        2.73        15.19        17.79        11.18        32.25         8.12 
TCGA-13-0802 TCGA-13-0888 TCGA-13-0906 TCGA-13-0910 TCGA-13-0920 TCGA-13-0923 
        8.19        70.39        44.94        37.08        13.81         6.41 
TCGA-13-1407 TCGA-13-1409 TCGA-13-1411 TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 
        6.05         6.84         4.21        82.88        52.44        38.17 
TCGA-13-1498 TCGA-13-1499 TCGA-13-2057 TCGA-23-1022 TCGA-23-1114 TCGA-23-1122 
       37.61        38.37        14.24        42.51        68.68        39.09 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2643 TCGA-23-2645 TCGA-24-0970 TCGA-24-0982 
      115.89        87.48         4.70         4.50        11.64        22.32 
TCGA-24-1105 TCGA-24-1418 TCGA-24-1422 TCGA-24-1424 TCGA-24-1426 TCGA-24-1427 
       47.41         7.99         0.76         6.02         5.36         4.80 
TCGA-24-1434 TCGA-24-1474 TCGA-24-1544 TCGA-24-1557 TCGA-24-1560 TCGA-24-1564 
       18.67        22.19        26.96        39.88        44.09        25.87 
TCGA-24-1567 TCGA-24-1850 TCGA-24-1920 TCGA-24-2027 TCGA-24-2280 TCGA-25-1316 
       17.23         5.49         9.80       109.68        70.45        37.02 
TCGA-25-1317 TCGA-25-1320 TCGA-25-1323 TCGA-25-1324 TCGA-25-1626 TCGA-25-1628 
        1.02        36.95        12.00        34.03        15.78        20.58 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 
       56.94        60.59        35.54        14.93        24.99        18.05 
TCGA-25-2393 TCGA-25-2398 TCGA-29-1701 TCGA-29-1762 TCGA-29-1766 TCGA-29-1769 
       38.04        45.01        16.90        85.68        39.09        22.98 
TCGA-29-1774 TCGA-29-1783 TCGA-29-2414 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       17.29         7.20        86.17         4.87        42.25        11.84 
TCGA-29-2434 TCGA-30-1714 TCGA-30-1853 TCGA-30-1855 TCGA-30-1859 TCGA-30-1861 
       11.47        38.07        36.26         2.47        48.07        34.78 
TCGA-30-1866 TCGA-36-1569 TCGA-36-1571 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       36.62        29.06        22.85         8.55        30.05        25.74 
TCGA-36-1580 TCGA-57-1586 TCGA-57-1992 TCGA-57-1994 TCGA-59-2352 TCGA-59-2363 
       24.23        22.32        28.96        25.02         9.40         5.39 
TCGA-61-1722 TCGA-61-1730 TCGA-61-1733 TCGA-61-1738 TCGA-61-1741 TCGA-61-1900 
        8.05         4.34        31.76        35.80        33.67         5.79 
TCGA-61-1917 TCGA-61-2009 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       43.43        39.85        58.39        65.49        55.50         6.48 
TCGA-61-2111 TCGA-61-2613 TCGA-61-2614 
      125.72        31.07         8.58 

$subtype3
TCGA-04-1335 TCGA-04-1349 TCGA-04-1361 TCGA-04-1536 TCGA-09-1662 TCGA-09-1664 
        1.81        21.57        32.52        29.06        89.33        74.89 
TCGA-09-1666 TCGA-09-1672 TCGA-09-1675 TCGA-09-2045 TCGA-09-2056 TCGA-10-0925 
       57.57         5.85        97.55        35.15        12.46        54.31 
TCGA-10-0928 TCGA-13-0714 TCGA-13-0725 TCGA-13-0726 TCGA-13-0758 TCGA-13-0766 
       18.48         6.21        12.39        31.07        11.38        21.40 
TCGA-13-0768 TCGA-13-0792 TCGA-13-0793 TCGA-13-0799 TCGA-13-0883 TCGA-13-0884 
        8.42        36.72        28.70         7.79        68.91       107.18 
TCGA-13-0886 TCGA-13-0893 TCGA-13-0894 TCGA-13-0897 TCGA-13-0901 TCGA-13-0905 
       74.27        43.36        49.61        57.47        19.36        47.84 
TCGA-13-0908 TCGA-13-0911 TCGA-13-0912 TCGA-13-0916 TCGA-13-0924 TCGA-13-1405 
       44.84        27.68        34.06        21.14         6.08         7.36 
TCGA-13-1477 TCGA-13-1482 TCGA-13-1484 TCGA-13-1485 TCGA-13-2065 TCGA-13-2071 
       54.61        61.71        98.04        20.68         8.75         6.28 
TCGA-20-0991 TCGA-20-0996 TCGA-23-1026 TCGA-23-1028 TCGA-23-1031 TCGA-23-1113 
       26.20        72.20        26.83        49.41        18.87        31.20 
TCGA-23-1117 TCGA-23-2079 TCGA-23-2641 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
       33.30        91.66         2.76        21.80        41.56         7.66 
TCGA-24-1104 TCGA-24-1416 TCGA-24-1417 TCGA-24-1423 TCGA-24-1425 TCGA-24-1430 
       63.55         6.38         7.82         6.25         5.95        28.34 
TCGA-24-1463 TCGA-24-1471 TCGA-24-1545 TCGA-24-1546 TCGA-24-1551 TCGA-24-1556 
       72.92         1.18        57.37        64.27        51.91        70.62 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 
       45.50        47.70        90.15        88.34        48.33        38.24 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1923 TCGA-24-1927 TCGA-24-2024 TCGA-24-2029 
       11.28         5.75        22.65        16.41        58.16        14.43 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2271 TCGA-24-2298 
       28.18        64.01        44.48        57.07        31.63        53.26 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1328 TCGA-25-1625 TCGA-25-1630 TCGA-25-1631 
       26.93        31.99        65.06        18.02         7.86         0.30 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       13.02        49.05         1.02         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1694 TCGA-29-1696 TCGA-29-1705 
       26.96        78.87        44.71        38.53        33.70        18.25 
TCGA-29-1707 TCGA-29-1711 TCGA-29-1764 TCGA-29-1768 TCGA-29-1770 TCGA-29-1771 
       41.95        34.62        62.93        31.23        24.36        22.52 
TCGA-29-1776 TCGA-29-1781 TCGA-29-2427 TCGA-29-2436 TCGA-30-1857 TCGA-30-1880 
       11.84         8.35        62.47         9.76         0.26        57.57 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1951 TCGA-31-1955 TCGA-31-1956 
       30.05        48.79        45.57        22.45        42.51        44.09 
TCGA-36-1568 TCGA-36-1574 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       28.73        22.55        29.79        25.91        25.08        23.80 
TCGA-57-1584 TCGA-59-2348 TCGA-59-2350 TCGA-59-2354 TCGA-59-2355 TCGA-61-1721 
       21.14       180.16        22.32        34.39         2.14        11.11 
TCGA-61-1725 TCGA-61-1734 TCGA-61-1736 TCGA-61-1895 TCGA-61-1901 TCGA-61-1903 
       31.40        28.47        48.79         1.41        11.41        13.02 
TCGA-61-1907 TCGA-61-1913 TCGA-61-1995 TCGA-61-2002 TCGA-61-2008 TCGA-61-2017 
       31.30        48.92         1.97        17.98        30.61        45.96 
TCGA-61-2018 TCGA-61-2094 TCGA-61-2095 TCGA-61-2109 TCGA-61-2110 TCGA-61-2612 
       45.40        71.74        61.64        20.68        44.52         6.35 

$subtype4
TCGA-04-1336 TCGA-04-1367 TCGA-04-1369 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       49.15        71.47        21.11        19.99        38.37       119.08 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1652 
       84.20        55.40        27.88        28.64        64.64        31.86 
TCGA-04-1654 TCGA-09-0367 TCGA-09-1661 TCGA-09-1667 TCGA-09-1668 TCGA-09-1670 
       47.70        17.95        38.43        61.87        55.36        17.98 
TCGA-09-2043 TCGA-09-2050 TCGA-10-0931 TCGA-10-0934 TCGA-10-0936 TCGA-13-0720 
        6.15        71.11        32.28         3.88        35.80        44.55 
TCGA-13-0723 TCGA-13-0751 TCGA-13-0755 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 
       39.58        55.17         2.47        11.54        34.06        31.04 
TCGA-13-0791 TCGA-13-0794 TCGA-13-0801 TCGA-13-0803 TCGA-13-0887 TCGA-13-0891 
       38.93        30.35         8.28        43.82        66.64        69.01 
TCGA-13-0904 TCGA-13-0913 TCGA-13-0921 TCGA-13-1403 TCGA-13-1410 TCGA-13-1492 
       48.33        29.98         4.64        10.88         4.70        73.55 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1500 TCGA-13-1505 TCGA-13-1507 
       49.22         4.24        54.31        13.97         4.21         4.77 
TCGA-13-1510 TCGA-13-1511 TCGA-13-2060 TCGA-13-2061 TCGA-20-0990 TCGA-20-1683 
        2.56         3.88         8.58        10.78        25.94        25.38 
TCGA-20-1684 TCGA-20-1686 TCGA-23-1021 TCGA-23-1024 TCGA-23-1030 TCGA-23-1107 
       19.07         2.93        47.54        15.39        29.10         0.30 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1120 TCGA-23-1121 TCGA-23-1123 
       51.35        54.51         3.22         4.27         6.38        33.47 
TCGA-23-1124 TCGA-23-2072 TCGA-23-2649 TCGA-24-0966 TCGA-24-1419 TCGA-24-1431 
       58.13        24.95         3.81         7.63         7.86        19.17 
TCGA-24-1436 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1548 
        8.55        12.46        45.14       105.99         9.11        16.21 
TCGA-24-1549 TCGA-24-1552 TCGA-24-1555 TCGA-24-1558 TCGA-24-1565 TCGA-24-1842 
       56.58        41.39        88.50        19.53        10.26         8.32 
TCGA-24-1843 TCGA-24-1845 TCGA-24-1924 TCGA-24-2020 TCGA-24-2023 TCGA-24-2026 
        3.48         3.81        30.21       151.99        44.84        34.82 
TCGA-24-2033 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2281 
       18.48        36.16         0.79         0.36        47.54        44.58 
TCGA-24-2288 TCGA-24-2290 TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 TCGA-25-1318 
        0.82        36.23        33.11        55.86         1.02        34.98 
TCGA-25-1319 TCGA-25-1322 TCGA-25-1878 TCGA-25-2396 TCGA-25-2397 TCGA-25-2399 
       65.00         2.99        85.05         3.02        12.00        19.99 
TCGA-25-2400 TCGA-29-1691 TCGA-29-1693 TCGA-29-1695 TCGA-29-1697 TCGA-29-1699 
       42.02        47.18       101.75         0.79        31.17         0.53 
TCGA-29-1702 TCGA-29-1703 TCGA-29-1710 TCGA-29-1775 TCGA-29-1778 TCGA-29-1784 
       18.64        59.67        29.23        12.36        14.93         5.36 
TCGA-29-1785 TCGA-29-2425 TCGA-29-2428 TCGA-30-1718 TCGA-30-1856 TCGA-30-1862 
       34.62        65.00        45.11        51.91        15.68         6.08 
TCGA-30-1887 TCGA-31-1950 TCGA-36-1578 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       24.26        18.77        27.85        35.05        33.01        29.49 
TCGA-57-1583 TCGA-59-2349 TCGA-59-2351 TCGA-61-1724 TCGA-61-1727 TCGA-61-1728 
       11.38        80.12       116.12        20.94        18.54        27.88 
TCGA-61-1743 TCGA-61-1899 TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 
       43.69         8.42         9.07        34.13        37.02        42.48 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1918 TCGA-61-1919 TCGA-61-1998 TCGA-61-2087 
       56.58        67.73        15.75        38.17         5.52         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2097 TCGA-61-2104 TCGA-61-2113 TCGA-61-2610 
        4.77        51.72        60.62        76.83        22.22        51.91 

subtype1 subtype2 subtype3 subtype4 
    0.36     0.76     0.26     0.30 
subtype1 subtype2 subtype3 subtype4 
  129.96   125.72   180.16   151.99 
subtype1 subtype2 subtype3 subtype4 
   23.54    29.06    30.33    29.36 
[1] "0.4 - 130.0 (23.5)" "0.8 - 125.7 (29.1)" "0.3 - 180.2 (30.3)"
[4] "0.3 - 152.0 (29.4)"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype1" "subtype2"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype1" "subtype4" "subtype4" "subtype2" "subtype2" "subtype1"
 [25] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
 [31] "subtype2" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
 [37] "subtype4" "subtype2" "subtype2" "subtype2" "subtype1" "subtype4"
 [43] "subtype2" "subtype2" "subtype4" "subtype3" "subtype3" "subtype1"
 [49] "subtype3" "subtype4" "subtype4" "subtype2" "subtype4" "subtype3"
 [55] "subtype2" "subtype2" "subtype3" "subtype4" "subtype1" "subtype3"
 [61] "subtype2" "subtype2" "subtype4" "subtype1" "subtype2" "subtype1"
 [67] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype1" "subtype4" "subtype2" "subtype4" "subtype2" "subtype4"
 [79] "subtype1" "subtype2" "subtype3" "subtype2" "subtype4" "subtype4"
 [85] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype4"
 [91] "subtype4" "subtype2" "subtype3" "subtype4" "subtype4" "subtype2"
 [97] "subtype4" "subtype1" "subtype3" "subtype3" "subtype4" "subtype3"
[103] "subtype3" "subtype4" "subtype1" "subtype1" "subtype3" "subtype2"
[109] "subtype4" "subtype2" "subtype4" "subtype1" "subtype1" "subtype1"
[115] "subtype3" "subtype3" "subtype1" "subtype3" "subtype4" "subtype2"
[121] "subtype1" "subtype1" "subtype4" "subtype3" "subtype3" "subtype3"
[127] "subtype1" "subtype1" "subtype3" "subtype1" "subtype4" "subtype3"
[133] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype4"
[139] "subtype3" "subtype1" "subtype2" "subtype4" "subtype2" "subtype3"
[145] "subtype4" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[151] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[157] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[163] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype4"
[169] "subtype2" "subtype2" "subtype4" "subtype1" "subtype1" "subtype4"
[175] "subtype1" "subtype4" "subtype1" "subtype4" "subtype4" "subtype1"
[181] "subtype2" "subtype1" "subtype4" "subtype4" "subtype3" "subtype1"
[187] "subtype3" "subtype1" "subtype4" "subtype3" "subtype3" "subtype1"
[193] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
[199] "subtype2" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
[205] "subtype1" "subtype4" "subtype3" "subtype1" "subtype4" "subtype4"
[211] "subtype4" "subtype4" "subtype3" "subtype2" "subtype1" "subtype3"
[217] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype4"
[223] "subtype4" "subtype1" "subtype4" "subtype2" "subtype2" "subtype3"
[229] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[235] "subtype4" "subtype4" "subtype1" "subtype2" "subtype3" "subtype3"
[241] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[247] "subtype3" "subtype3" "subtype2" "subtype4" "subtype2" "subtype3"
[253] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[259] "subtype4" "subtype2" "subtype1" "subtype4" "subtype3" "subtype4"
[265] "subtype4" "subtype4" "subtype4" "subtype1" "subtype3" "subtype2"
[271] "subtype2" "subtype3" "subtype3" "subtype4" "subtype4" "subtype1"
[277] "subtype3" "subtype4" "subtype1" "subtype4" "subtype3" "subtype2"
[283] "subtype4" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[289] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
[295] "subtype4" "subtype1" "subtype4" "subtype1" "subtype3" "subtype3"
[301] "subtype2" "subtype2" "subtype3" "subtype4" "subtype3" "subtype1"
[307] "subtype1" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
[313] "subtype2" "subtype3" "subtype1" "subtype4" "subtype3" "subtype3"
[319] "subtype3" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
[325] "subtype3" "subtype2" "subtype4" "subtype4" "subtype1" "subtype4"
[331] "subtype1" "subtype4" "subtype4" "subtype3" "subtype4" "subtype3"
[337] "subtype3" "subtype1" "subtype2" "subtype2" "subtype4" "subtype4"
[343] "subtype2" "subtype1" "subtype4" "subtype2" "subtype2" "subtype1"
[349] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[355] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[361] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
[367] "subtype3" "subtype3" "subtype3" "subtype2" "subtype4" "subtype4"
[373] "subtype2" "subtype4" "subtype4" "subtype3" "subtype3" "subtype3"
[379] "subtype3" "subtype3" "subtype3" "subtype4" "subtype4" "subtype3"
[385] "subtype4" "subtype3" "subtype4" "subtype1" "subtype4" "subtype2"
[391] "subtype4" "subtype4" "subtype3" "subtype3" "subtype4" "subtype3"
[397] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[403] "subtype2" "subtype3" "subtype3" "subtype2" "subtype4" "subtype3"
[409] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
[415] "subtype2" "subtype4" "subtype3" "subtype4" "subtype2" "subtype2"
[421] "subtype2" "subtype2" "subtype3" "subtype2" "subtype4" "subtype2"
[427] "subtype2" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
[433] "subtype4" "subtype2" "subtype1" "subtype3" "subtype4" "subtype3"
[439] "subtype3" "subtype3" "subtype1" "subtype4" "subtype3" "subtype1"
[445] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[451] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype4"
[457] "subtype2" "subtype1" "subtype4" "subtype4" "subtype4" "subtype3"
[463] "subtype3" "subtype3" "subtype3" "subtype1" "subtype4" "subtype3"
[469] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[475] "subtype4" "subtype3" "subtype4" "subtype2" "subtype3" "subtype3"
[481] "subtype2" "subtype3" "subtype2" "subtype4" "subtype3" "subtype4"
[487] "subtype4" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[493] "subtype2" "subtype1" "subtype2" "subtype4" "subtype3" "subtype4"
[499] "subtype2" "subtype3" "subtype3" "subtype4" "subtype4" "subtype3"
[505] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
[511] "subtype4" "subtype4" "subtype3" "subtype4" "subtype1" "subtype3"
[517] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[523] "subtype3" "subtype4" "subtype4" "subtype4" "subtype3" "subtype3"
[529] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype4"
[535] "subtype3" "subtype3" "subtype2" "subtype4" "subtype4" "subtype1"
[541] "subtype3" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype1" "subtype2"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype1" "subtype4" "subtype4" "subtype2" "subtype2" "subtype1"
 [25] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
 [31] "subtype2" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
 [37] "subtype4" "subtype2" "subtype2" "subtype2" "subtype1" "subtype4"
 [43] "subtype2" "subtype2" "subtype4" "subtype3" "subtype3" "subtype1"
 [49] "subtype3" "subtype4" "subtype4" "subtype2" "subtype4" "subtype3"
 [55] "subtype2" "subtype2" "subtype3" "subtype4" "subtype1" "subtype3"
 [61] "subtype2" "subtype2" "subtype4" "subtype1" "subtype2" "subtype1"
 [67] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype1" "subtype4" "subtype2" "subtype4" "subtype2" "subtype4"
 [79] "subtype1" "subtype2" "subtype3" "subtype2" "subtype4" "subtype4"
 [85] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype4"
 [91] "subtype4" "subtype2" "subtype3" "subtype4" "subtype4" "subtype2"
 [97] "subtype4" "subtype1" "subtype3" "subtype3" "subtype4" "subtype3"
[103] "subtype3" "subtype4" "subtype1" "subtype1" "subtype3" "subtype2"
[109] "subtype4" "subtype2" "subtype4" "subtype1" "subtype1" "subtype1"
[115] "subtype3" "subtype3" "subtype1" "subtype3" "subtype4" "subtype2"
[121] "subtype1" "subtype1" "subtype4" "subtype3" "subtype3" "subtype3"
[127] "subtype1" "subtype1" "subtype3" "subtype1" "subtype4" "subtype3"
[133] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype4"
[139] "subtype3" "subtype1" "subtype2" "subtype4" "subtype2" "subtype3"
[145] "subtype4" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[151] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[157] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[163] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype4"
[169] "subtype2" "subtype2" "subtype4" "subtype1" "subtype1" "subtype4"
[175] "subtype1" "subtype4" "subtype1" "subtype4" "subtype4" "subtype1"
[181] "subtype2" "subtype1" "subtype4" "subtype4" "subtype3" "subtype1"
[187] "subtype3" "subtype1" "subtype4" "subtype3" "subtype3" "subtype1"
[193] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
[199] "subtype2" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
[205] "subtype1" "subtype4" "subtype3" "subtype1" "subtype4" "subtype4"
[211] "subtype4" "subtype4" "subtype3" "subtype2" "subtype1" "subtype3"
[217] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype4"
[223] "subtype4" "subtype1" "subtype4" "subtype2" "subtype2" "subtype3"
[229] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[235] "subtype4" "subtype4" "subtype1" "subtype2" "subtype3" "subtype3"
[241] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[247] "subtype3" "subtype3" "subtype2" "subtype4" "subtype2" "subtype3"
[253] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[259] "subtype4" "subtype2" "subtype1" "subtype4" "subtype3" "subtype4"
[265] "subtype4" "subtype4" "subtype4" "subtype1" "subtype3" "subtype2"
[271] "subtype2" "subtype3" "subtype3" "subtype4" "subtype4" "subtype1"
[277] "subtype3" "subtype4" "subtype1" "subtype4" "subtype3" "subtype2"
[283] "subtype4" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[289] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
[295] "subtype4" "subtype1" "subtype4" "subtype1" "subtype3" "subtype3"
[301] "subtype2" "subtype2" "subtype3" "subtype4" "subtype3" "subtype1"
[307] "subtype1" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
[313] "subtype2" "subtype3" "subtype1" "subtype4" "subtype3" "subtype3"
[319] "subtype3" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
[325] "subtype3" "subtype2" "subtype4" "subtype4" "subtype1" "subtype4"
[331] "subtype1" "subtype4" "subtype4" "subtype3" "subtype4" "subtype3"
[337] "subtype3" "subtype1" "subtype2" "subtype2" "subtype4" "subtype4"
[343] "subtype2" "subtype1" "subtype4" "subtype2" "subtype2" "subtype1"
[349] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[355] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[361] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
[367] "subtype3" "subtype3" "subtype3" "subtype2" "subtype4" "subtype4"
[373] "subtype2" "subtype4" "subtype4" "subtype3" "subtype3" "subtype3"
[379] "subtype3" "subtype3" "subtype3" "subtype4" "subtype4" "subtype3"
[385] "subtype4" "subtype3" "subtype4" "subtype1" "subtype4" "subtype2"
[391] "subtype4" "subtype4" "subtype3" "subtype3" "subtype4" "subtype3"
[397] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[403] "subtype2" "subtype3" "subtype3" "subtype2" "subtype4" "subtype3"
[409] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
[415] "subtype2" "subtype4" "subtype3" "subtype4" "subtype2" "subtype2"
[421] "subtype2" "subtype2" "subtype3" "subtype2" "subtype4" "subtype2"
[427] "subtype2" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
[433] "subtype4" "subtype2" "subtype1" "subtype3" "subtype4" "subtype3"
[439] "subtype3" "subtype3" "subtype1" "subtype4" "subtype3" "subtype1"
[445] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[451] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype4"
[457] "subtype2" "subtype1" "subtype4" "subtype4" "subtype4" "subtype3"
[463] "subtype3" "subtype3" "subtype3" "subtype1" "subtype4" "subtype3"
[469] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[475] "subtype4" "subtype3" "subtype4" "subtype2" "subtype3" "subtype3"
[481] "subtype2" "subtype3" "subtype2" "subtype4" "subtype3" "subtype4"
[487] "subtype4" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[493] "subtype2" "subtype1" "subtype2" "subtype4" "subtype3" "subtype4"
[499] "subtype2" "subtype3" "subtype3" "subtype4" "subtype4" "subtype3"
[505] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
[511] "subtype4" "subtype4" "subtype3" "subtype4" "subtype1" "subtype3"
[517] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[523] "subtype3" "subtype4" "subtype4" "subtype4" "subtype3" "subtype3"
[529] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype4"
[535] "subtype3" "subtype3" "subtype2" "subtype4" "subtype4" "subtype1"
[541] "subtype3" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype1" "subtype2"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [19] "subtype1" "subtype4" "subtype4" "subtype2" "subtype2" "subtype1"
 [25] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
 [31] "subtype2" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
 [37] "subtype4" "subtype2" "subtype2" "subtype2" "subtype1" "subtype4"
 [43] "subtype2" "subtype2" "subtype4" "subtype3" "subtype3" "subtype1"
 [49] "subtype3" "subtype4" "subtype4" "subtype2" "subtype4" "subtype3"
 [55] "subtype2" "subtype2" "subtype3" "subtype4" "subtype1" "subtype3"
 [61] "subtype2" "subtype2" "subtype4" "subtype1" "subtype2" "subtype1"
 [67] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [73] "subtype1" "subtype4" "subtype2" "subtype4" "subtype2" "subtype4"
 [79] "subtype1" "subtype2" "subtype3" "subtype2" "subtype4" "subtype4"
 [85] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype4"
 [91] "subtype4" "subtype2" "subtype3" "subtype4" "subtype4" "subtype2"
 [97] "subtype4" "subtype1" "subtype3" "subtype3" "subtype4" "subtype3"
[103] "subtype3" "subtype4" "subtype1" "subtype1" "subtype3" "subtype2"
[109] "subtype4" "subtype2" "subtype4" "subtype1" "subtype1" "subtype1"
[115] "subtype3" "subtype3" "subtype1" "subtype3" "subtype4" "subtype2"
[121] "subtype1" "subtype1" "subtype4" "subtype3" "subtype3" "subtype3"
[127] "subtype1" "subtype1" "subtype3" "subtype1" "subtype4" "subtype3"
[133] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype4"
[139] "subtype3" "subtype1" "subtype2" "subtype4" "subtype2" "subtype3"
[145] "subtype4" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[151] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[157] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[163] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype4"
[169] "subtype2" "subtype2" "subtype4" "subtype1" "subtype1" "subtype4"
[175] "subtype1" "subtype4" "subtype1" "subtype4" "subtype4" "subtype1"
[181] "subtype2" "subtype1" "subtype4" "subtype4" "subtype3" "subtype1"
[187] "subtype3" "subtype1" "subtype4" "subtype3" "subtype3" "subtype1"
[193] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype4"
[199] "subtype2" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
[205] "subtype1" "subtype4" "subtype3" "subtype1" "subtype4" "subtype4"
[211] "subtype4" "subtype4" "subtype3" "subtype2" "subtype1" "subtype3"
[217] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype4"
[223] "subtype4" "subtype1" "subtype4" "subtype2" "subtype2" "subtype3"
[229] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[235] "subtype4" "subtype4" "subtype1" "subtype2" "subtype3" "subtype3"
[241] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[247] "subtype3" "subtype3" "subtype2" "subtype4" "subtype2" "subtype3"
[253] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[259] "subtype4" "subtype2" "subtype1" "subtype4" "subtype3" "subtype4"
[265] "subtype4" "subtype4" "subtype4" "subtype1" "subtype3" "subtype2"
[271] "subtype2" "subtype3" "subtype3" "subtype4" "subtype4" "subtype1"
[277] "subtype3" "subtype4" "subtype1" "subtype4" "subtype3" "subtype2"
[283] "subtype4" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[289] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
[295] "subtype4" "subtype1" "subtype4" "subtype1" "subtype3" "subtype3"
[301] "subtype2" "subtype2" "subtype3" "subtype4" "subtype3" "subtype1"
[307] "subtype1" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
[313] "subtype2" "subtype3" "subtype1" "subtype4" "subtype3" "subtype3"
[319] "subtype3" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
[325] "subtype3" "subtype2" "subtype4" "subtype4" "subtype1" "subtype4"
[331] "subtype1" "subtype4" "subtype4" "subtype3" "subtype4" "subtype3"
[337] "subtype3" "subtype1" "subtype2" "subtype2" "subtype4" "subtype4"
[343] "subtype2" "subtype1" "subtype4" "subtype2" "subtype2" "subtype1"
[349] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[355] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[361] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
[367] "subtype3" "subtype3" "subtype3" "subtype2" "subtype4" "subtype4"
[373] "subtype2" "subtype4" "subtype4" "subtype3" "subtype3" "subtype3"
[379] "subtype3" "subtype3" "subtype3" "subtype4" "subtype4" "subtype3"
[385] "subtype4" "subtype3" "subtype4" "subtype1" "subtype4" "subtype2"
[391] "subtype4" "subtype4" "subtype3" "subtype3" "subtype4" "subtype3"
[397] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[403] "subtype2" "subtype3" "subtype3" "subtype2" "subtype4" "subtype3"
[409] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype4"
[415] "subtype2" "subtype4" "subtype3" "subtype4" "subtype2" "subtype2"
[421] "subtype2" "subtype2" "subtype3" "subtype2" "subtype4" "subtype2"
[427] "subtype2" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
[433] "subtype4" "subtype2" "subtype1" "subtype3" "subtype4" "subtype3"
[439] "subtype3" "subtype3" "subtype1" "subtype4" "subtype3" "subtype1"
[445] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[451] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype4"
[457] "subtype2" "subtype1" "subtype4" "subtype4" "subtype4" "subtype3"
[463] "subtype3" "subtype3" "subtype3" "subtype1" "subtype4" "subtype3"
[469] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[475] "subtype4" "subtype3" "subtype4" "subtype2" "subtype3" "subtype3"
[481] "subtype2" "subtype3" "subtype2" "subtype4" "subtype3" "subtype4"
[487] "subtype4" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[493] "subtype2" "subtype1" "subtype2" "subtype4" "subtype3" "subtype4"
[499] "subtype2" "subtype3" "subtype3" "subtype4" "subtype4" "subtype3"
[505] "subtype4" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
[511] "subtype4" "subtype4" "subtype3" "subtype4" "subtype1" "subtype3"
[517] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[523] "subtype3" "subtype4" "subtype4" "subtype4" "subtype3" "subtype3"
[529] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype4"
[535] "subtype3" "subtype3" "subtype2" "subtype4" "subtype4" "subtype1"
[541] "subtype3" "subtype2" "subtype2"
D6V2, continuous
D6V3, multiclass
D6V4, continuous
D6V5, multiclass
D6V6, binary
          cls
clus         0   1
  subtype1   1 104
  subtype2   2 135
  subtype3   0 151
  subtype4   0 156
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1  104
  subtype2    2  135
  subtype3    0  151
  subtype4    0  156
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         1        2        0        0
  YES      104      135      151      156
D6V7, binary
          cls
clus         0   1
  subtype1  84  21
  subtype2 106  31
  subtype3 129  22
  subtype4 122  34
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   84   21
  subtype2  106   31
  subtype3  129   22
  subtype4  122   34
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        84      106      129      122
  YES       21       31       22       34

Clustering(7) Variable = RPPA_CNMF
D7V1, survival
          sevent
clus2        0   1
  subtype1  54  71
  subtype2 112  92
  subtype3  25  46
subtype1 subtype2 subtype3 
     125      204       71 
subtype1 subtype2 subtype3 
      71       92       46 
$subtype1
TCGA-04-1335 TCGA-04-1338 TCGA-04-1342 TCGA-04-1349 TCGA-04-1525 TCGA-04-1542 
        1.81        46.62        18.51        21.57        38.37        84.20 
TCGA-04-1638 TCGA-04-1644 TCGA-09-1664 TCGA-09-1665 TCGA-09-2049 TCGA-09-2056 
       55.40        48.89        74.89        41.59       112.37        12.46 
TCGA-10-0925 TCGA-10-0933 TCGA-13-0725 TCGA-13-0793 TCGA-13-0886 TCGA-13-0894 
       54.31        11.70        12.39        28.70        74.27        49.61 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0906 TCGA-13-0910 TCGA-13-0913 TCGA-13-1408 
       19.36        47.38        44.94        37.08        29.98         5.92 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.21         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1488 TCGA-13-1494 TCGA-13-1495 TCGA-13-1498 TCGA-13-1499 
       98.04        70.82        38.17        49.22        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-2065 TCGA-20-1686 TCGA-23-1122 TCGA-23-2078 
       13.97        32.84         8.75         2.93        39.09        87.48 
TCGA-24-0970 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1104 TCGA-24-1423 
       11.64        41.56         7.66        22.32        63.55         6.25 
TCGA-24-1427 TCGA-24-1466 TCGA-24-1545 TCGA-24-1546 TCGA-24-1553 TCGA-24-1562 
        4.80        45.14        57.37        64.27        58.09        45.50 
TCGA-24-1563 TCGA-24-1842 TCGA-24-1850 TCGA-24-1923 TCGA-24-1924 TCGA-24-2027 
       47.70         8.32         5.49        22.65        30.21       109.68 
TCGA-24-2029 TCGA-24-2033 TCGA-24-2038 TCGA-24-2260 TCGA-24-2262 TCGA-24-2267 
       14.43        18.48        44.48        36.16         0.36        47.54 
TCGA-24-2271 TCGA-24-2281 TCGA-24-2289 TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 
       31.63        44.58        67.36        16.64        55.86        53.26 
TCGA-25-1319 TCGA-25-1322 TCGA-25-1323 TCGA-25-1326 TCGA-25-1328 TCGA-25-1623 
       65.00         2.99        12.00        31.04        65.06        18.58 
TCGA-25-1630 TCGA-25-2042 TCGA-25-2398 TCGA-25-2404 TCGA-25-2408 TCGA-29-1690 
        7.86        13.02        45.01        29.00        30.97        44.71 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 TCGA-29-1776 TCGA-29-2425 
       39.09        31.23        22.98        22.52        11.84        65.00 
TCGA-29-2427 TCGA-29-2429 TCGA-30-1856 TCGA-30-1892 TCGA-31-1944 TCGA-31-1950 
       62.47         4.87        15.68        48.79        45.57        18.77 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 
       28.73        29.06        30.05        25.74        24.23        24.69 
TCGA-36-2537 TCGA-36-2540 TCGA-36-2543 TCGA-36-2549 TCGA-42-2587 TCGA-59-2351 
       25.91        23.80         2.24         6.05         9.07       116.12 
TCGA-59-2363 TCGA-61-1722 TCGA-61-1895 TCGA-61-1900 TCGA-61-1903 TCGA-61-1906 
        5.39         8.05         1.41         5.79        13.02        34.13 
TCGA-61-1907 TCGA-61-1919 TCGA-61-2003 TCGA-61-2012 TCGA-61-2094 TCGA-61-2095 
       31.30        38.17         3.98        30.64        71.74        61.64 
TCGA-61-2101 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2613 
       55.50       125.72        22.22        51.91        31.07 

$subtype2
TCGA-04-1336 TCGA-04-1348 TCGA-04-1356 TCGA-04-1361 TCGA-04-1369 TCGA-04-1514 
       49.15        48.76        49.28        32.52        21.11        56.55 
TCGA-04-1516 TCGA-04-1517 TCGA-04-1646 TCGA-04-1649 TCGA-04-1651 TCGA-09-1666 
       41.59        19.99        27.88        64.64        36.23        57.57 
TCGA-09-1670 TCGA-09-1673 TCGA-09-2043 TCGA-09-2044 TCGA-09-2051 TCGA-09-2054 
       17.98         3.02         6.15         6.12        63.09        20.91 
TCGA-09-2055 TCGA-10-0931 TCGA-10-0936 TCGA-13-0720 TCGA-13-0794 TCGA-13-0797 
       26.93        32.28        35.80        44.55        30.35         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0804 TCGA-13-0884 
        7.79         8.12         8.28         8.19        35.28       107.18 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0891 TCGA-13-0899 TCGA-13-0916 TCGA-13-0920 
       66.64        70.39        69.01        56.15        21.14        13.81 
TCGA-13-0921 TCGA-13-1404 TCGA-13-1409 TCGA-13-1410 TCGA-13-1487 TCGA-13-1489 
        4.64         6.61         6.84         4.70        22.39        82.88 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1496 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       52.44        73.55         4.24        16.57         4.21         4.41 
TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 
        4.14         3.88         3.09        12.23         8.58        10.78 
TCGA-13-2066 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1109 
        9.70        25.38        19.07        16.67         2.66        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1121 TCGA-23-1123 TCGA-23-1809 TCGA-23-2077 
       54.51         3.22         6.38        33.47         0.53       115.89 
TCGA-23-2079 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-23-2649 TCGA-24-0966 
       91.66         2.76         4.70         4.50         3.81         7.63 
TCGA-24-1103 TCGA-24-1105 TCGA-24-1416 TCGA-24-1417 TCGA-24-1419 TCGA-24-1424 
       54.08        47.41         6.38         7.82         7.86         6.02 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 
       17.36        28.34        19.17        43.53         8.55        12.46 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1548 
      105.99         9.11         1.18        22.19        26.96        16.21 
TCGA-24-1549 TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       56.58        51.91        41.39        88.50        70.62        39.88 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       19.53        44.09        10.26        17.23        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1930 
       48.33        38.24         3.72         3.81         4.37        81.11 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2026 TCGA-24-2030 TCGA-24-2036 TCGA-24-2254 
      151.99        44.84        34.82        53.95        64.01        57.07 
TCGA-24-2261 TCGA-24-2288 TCGA-24-2290 TCGA-25-1312 TCGA-25-1314 TCGA-25-1315 
        0.79         0.82        36.23         1.02        31.99        51.06 
TCGA-25-1318 TCGA-25-1321 TCGA-25-1329 TCGA-25-1627 TCGA-25-1631 TCGA-25-1635 
       34.98        33.96         2.96         0.36         0.30        51.22 
TCGA-25-1878 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2400 TCGA-25-2409 
       85.05        38.04         3.02        12.00        42.02        26.96 
TCGA-29-1688 TCGA-29-1691 TCGA-29-1693 TCGA-29-1695 TCGA-29-1697 TCGA-29-1698 
       78.87        47.18       101.75         0.79        31.17        68.28 
TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1711 TCGA-29-1761 
       18.64        59.67        18.25        41.95        34.62        17.00 
TCGA-29-1762 TCGA-29-1764 TCGA-29-1774 TCGA-29-1775 TCGA-29-1778 TCGA-29-1781 
       85.68        62.93        17.29        12.36        14.93         8.35 
TCGA-29-2428 TCGA-29-2431 TCGA-29-2434 TCGA-29-2435 TCGA-30-1859 TCGA-30-1869 
       45.11        42.25        11.47         1.12        48.07        51.39 
TCGA-31-1951 TCGA-31-1955 TCGA-36-1570 TCGA-36-1571 TCGA-36-1575 TCGA-36-1578 
       22.45        42.51        21.53        22.85         8.55        27.85 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2538 TCGA-36-2542 
       35.05        33.01        29.49        29.79        25.08        21.60 
TCGA-36-2547 TCGA-36-2548 TCGA-36-2552 TCGA-42-2582 TCGA-42-2589 TCGA-42-2591 
       20.52        14.17        11.47        14.30         7.56         7.63 
TCGA-57-1586 TCGA-59-2348 TCGA-59-2352 TCGA-59-2372 TCGA-61-1724 TCGA-61-1727 
       22.32       180.16         9.40        44.78        20.94        18.54 
TCGA-61-1730 TCGA-61-1734 TCGA-61-1736 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
        4.34        28.47        48.79        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1899 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1915 
       43.69         8.42        37.02        42.48        48.92        67.73 
TCGA-61-1918 TCGA-61-1995 TCGA-61-2000 TCGA-61-2009 TCGA-61-2018 TCGA-61-2087 
       15.75         1.97        14.50        39.85        45.40         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2096 TCGA-61-2098 TCGA-61-2104 TCGA-61-2109 
        4.77        51.72        58.39        65.49        76.83        20.68 

$subtype3
TCGA-04-1343 TCGA-04-1362 TCGA-04-1370 TCGA-04-1648 TCGA-04-1654 TCGA-09-1662 
       11.87        44.32        59.97        28.64        47.70        89.33 
TCGA-09-1674 TCGA-09-2045 TCGA-10-0926 TCGA-13-0897 TCGA-13-0911 TCGA-13-1405 
        8.55        35.15        25.91        57.47        27.68         7.36 
TCGA-13-1507 TCGA-20-1682 TCGA-23-1124 TCGA-23-2081 TCGA-23-2647 TCGA-24-1422 
        4.77        27.48        58.13        77.00         4.44         0.76 
TCGA-24-1434 TCGA-24-1463 TCGA-24-1470 TCGA-24-1550 TCGA-24-1564 TCGA-24-1849 
       18.67        72.92         3.42        41.06        25.87         5.75 
TCGA-24-1920 TCGA-24-1927 TCGA-24-2024 TCGA-24-2295 TCGA-25-1313 TCGA-25-1316 
        9.80        16.41        58.16        33.11        26.93        37.02 
TCGA-25-1320 TCGA-25-1325 TCGA-25-1625 TCGA-25-1626 TCGA-25-1628 TCGA-25-1632 
       36.95        32.09        18.02        15.78        20.58        56.94 
TCGA-25-1633 TCGA-25-2391 TCGA-25-2399 TCGA-25-2401 TCGA-29-1694 TCGA-29-1696 
       60.59        49.05        19.99         2.96        38.53        33.70 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1770 TCGA-29-1777 TCGA-29-1783 TCGA-29-1785 
        0.53        16.90        24.36        12.30         7.20        34.62 
TCGA-29-2432 TCGA-29-2436 TCGA-30-1718 TCGA-30-1855 TCGA-30-1860 TCGA-30-1861 
       11.84         9.76        51.91         2.47        44.91        34.78 
TCGA-30-1887 TCGA-30-1891 TCGA-31-1946 TCGA-36-2544 TCGA-36-2545 TCGA-36-2551 
       24.26        30.05        30.18        20.98        18.31        16.14 
TCGA-42-2588 TCGA-42-2590 TCGA-59-2349 TCGA-59-2354 TCGA-61-1721 TCGA-61-1733 
        9.44         7.46        80.12        34.39        11.11        31.76 
TCGA-61-1914 TCGA-61-2017 TCGA-61-2102 TCGA-61-2612 TCGA-61-2614 
       56.58        45.96         6.48         6.35         8.58 

subtype1 subtype2 subtype3 
    0.36     0.30     0.53 
subtype1 subtype2 subtype3 
  125.72   180.16    89.33 
subtype1 subtype2 subtype3 
   31.07    25.23    25.91 
[1] "0.4 - 125.7 (31.1)" "0.3 - 180.2 (25.2)" "0.5 - 89.3 (25.9)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
  [7] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [25] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [37] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [43] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [61] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[121] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[151] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[163] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[175] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[181] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[187] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[193] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[199] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[205] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[217] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[223] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[229] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[235] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[241] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[247] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[253] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[259] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[265] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[277] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[283] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[289] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[295] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[301] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[307] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[313] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[319] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[325] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[331] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[337] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[343] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[349] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[355] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[367] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[373] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[379] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[385] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[391] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[397] "subtype1" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
  [7] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [25] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [37] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [43] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [61] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[121] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[151] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[163] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[175] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[181] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[187] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[193] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[199] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[205] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[217] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[223] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[229] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[235] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[241] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[247] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[253] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[259] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[265] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[277] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[283] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[289] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[295] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[301] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[307] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[313] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[319] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[325] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[331] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[337] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[343] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[349] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[355] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[367] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[373] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[379] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[385] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[391] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[397] "subtype1" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
  [7] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [25] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [37] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [43] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [61] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [73] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [85] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [97] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[121] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[151] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[163] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[175] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[181] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[187] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[193] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[199] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[205] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[211] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[217] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[223] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[229] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[235] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[241] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[247] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[253] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[259] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[265] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[277] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[283] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[289] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[295] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[301] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[307] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[313] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[319] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[325] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[331] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[337] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[343] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[349] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[355] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[367] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[373] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[379] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[385] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[391] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[397] "subtype1" "subtype3" "subtype1" "subtype3"
D7V2, continuous
D7V3, multiclass
D7V4, continuous
D7V5, multiclass
D7V6, binary
          cls
clus         0   1
  subtype1   2 126
  subtype2   0 207
  subtype3   0  72
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2  126
  subtype2    0  207
  subtype3    0   72
     clus
vv    subtype1 subtype2 subtype3
  NO         2        0        0
  YES      126      207       72
D7V7, binary
          cls
clus         0   1
  subtype1 106  22
  subtype2 172  35
  subtype3  56  16
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  106   22
  subtype2  172   35
  subtype3   56   16
     clus
vv    subtype1 subtype2 subtype3
  NO       106      172       56
  YES       22       35       16

Clustering(8) Variable = RPPA_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 52 45
  subtype2 26 42
  subtype3 59 84
  subtype4 54 38
subtype1 subtype2 subtype3 subtype4 
      97       68      143       92 
subtype1 subtype2 subtype3 subtype4 
      45       42       84       38 
$subtype1
TCGA-04-1336 TCGA-04-1361 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1646 
       49.15        32.52        56.55        41.59        19.99        27.88 
TCGA-04-1649 TCGA-09-1664 TCGA-09-1666 TCGA-09-1670 TCGA-09-1673 TCGA-09-2043 
       64.64        74.89        57.57        17.98         3.02         6.15 
TCGA-09-2051 TCGA-10-0931 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0804 
       63.09        32.28         8.71         7.79         8.28        35.28 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0921 TCGA-13-2059 TCGA-20-1687 TCGA-23-1109 
       29.98        21.14         4.64        12.23         2.66        51.35 
TCGA-23-1110 TCGA-23-1123 TCGA-23-2077 TCGA-23-2079 TCGA-23-2649 TCGA-24-0966 
       54.51        33.47       115.89        91.66         3.81         7.63 
TCGA-24-1104 TCGA-24-1416 TCGA-24-1419 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 
       63.55         6.38         7.86        17.36        28.34        19.17 
TCGA-24-1464 TCGA-24-1471 TCGA-24-1548 TCGA-24-1549 TCGA-24-1551 TCGA-24-1552 
       12.46         1.18        16.21        56.58        51.91        41.39 
TCGA-24-1555 TCGA-24-1557 TCGA-24-1560 TCGA-24-1565 TCGA-24-1603 TCGA-24-1604 
       88.50        39.88        44.09        10.26        90.15        88.34 
TCGA-24-1616 TCGA-24-1844 TCGA-24-1846 TCGA-24-2036 TCGA-24-2254 TCGA-24-2267 
       38.24         3.72         4.37        64.01        57.07        47.54 
TCGA-25-1312 TCGA-25-1314 TCGA-25-1321 TCGA-25-1627 TCGA-25-1631 TCGA-25-2396 
        1.02        31.99        33.96         0.36         0.30         3.02 
TCGA-25-2397 TCGA-25-2400 TCGA-29-1691 TCGA-29-1696 TCGA-29-1702 TCGA-29-1761 
       12.00        42.02        47.18        33.70        18.64        17.00 
TCGA-29-1775 TCGA-29-1778 TCGA-30-1859 TCGA-30-1869 TCGA-31-1955 TCGA-36-1570 
       12.36        14.93        48.07        51.39        42.51        21.53 
TCGA-36-1578 TCGA-36-2532 TCGA-36-2534 TCGA-36-2538 TCGA-36-2547 TCGA-36-2549 
       27.85        29.49        29.79        25.08        20.52         6.05 
TCGA-36-2551 TCGA-59-2352 TCGA-61-1730 TCGA-61-1734 TCGA-61-1736 TCGA-61-1741 
       16.14         9.40         4.34        28.47        48.79        33.67 
TCGA-61-1899 TCGA-61-1903 TCGA-61-1911 TCGA-61-1913 TCGA-61-1915 TCGA-61-1995 
        8.42        13.02        42.48        48.92        67.73         1.97 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2096 TCGA-61-2104 
       45.40         4.80         4.77        51.72        58.39        76.83 
TCGA-61-2109 
       20.68 

$subtype2
TCGA-04-1343 TCGA-04-1356 TCGA-04-1362 TCGA-04-1369 TCGA-04-1370 TCGA-04-1648 
       11.87        49.28        44.32        21.11        59.97        28.64 
TCGA-04-1654 TCGA-09-2045 TCGA-09-2055 TCGA-13-0720 TCGA-13-0887 TCGA-13-0891 
       47.70        35.15        26.93        44.55        66.64        69.01 
TCGA-13-0897 TCGA-13-0899 TCGA-13-1495 TCGA-13-1496 TCGA-13-1507 TCGA-13-1509 
       57.47        56.15        49.22         4.24         4.77         4.14 
TCGA-23-1111 TCGA-23-1124 TCGA-23-2081 TCGA-23-2641 TCGA-24-1103 TCGA-24-1422 
        3.22        58.13        77.00         2.76        54.08         0.76 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1466 TCGA-24-1469 TCGA-24-1470 TCGA-24-1920 
       43.53         8.55        45.14         9.11         3.42         9.80 
TCGA-24-1927 TCGA-24-1930 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2030 
       16.41        81.11        44.84        58.16        34.82        53.95 
TCGA-24-2261 TCGA-24-2289 TCGA-24-2290 TCGA-24-2295 TCGA-25-1320 TCGA-25-1625 
        0.79        67.36        36.23        33.11        36.95        18.02 
TCGA-25-1632 TCGA-25-2391 TCGA-25-2399 TCGA-25-2409 TCGA-29-1688 TCGA-29-1694 
       56.94        49.05        19.99        26.96        78.87        38.53 
TCGA-29-1695 TCGA-29-1698 TCGA-29-1705 TCGA-29-1711 TCGA-29-2435 TCGA-30-1855 
        0.79        68.28        18.25        34.62         1.12         2.47 
TCGA-30-1860 TCGA-30-1861 TCGA-31-1951 TCGA-36-2544 TCGA-36-2545 TCGA-42-2582 
       44.91        34.78        22.45        20.98        18.31        14.30 
TCGA-42-2589 TCGA-59-2348 TCGA-61-1727 TCGA-61-1738 TCGA-61-1743 TCGA-61-1910 
        7.56       180.16        18.54        35.80        43.69        37.02 
TCGA-61-1914 TCGA-61-2017 
       56.58        45.96 

$subtype3
TCGA-04-1335 TCGA-04-1338 TCGA-04-1342 TCGA-04-1349 TCGA-04-1542 TCGA-04-1638 
        1.81        46.62        18.51        21.57        84.20        55.40 
TCGA-09-1662 TCGA-09-1665 TCGA-09-2049 TCGA-10-0925 TCGA-13-0886 TCGA-13-0894 
       89.33        41.59       112.37        54.31        74.27        49.61 
TCGA-13-0906 TCGA-13-0911 TCGA-13-1405 TCGA-13-1408 TCGA-13-1409 TCGA-13-1411 
       44.94        27.68         7.36         5.92         6.84         4.21 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1483 TCGA-13-1488 TCGA-13-1491 
        5.33        54.61        87.06        29.39        70.82        52.44 
TCGA-13-1494 TCGA-13-1498 TCGA-13-1500 TCGA-13-1501 TCGA-13-1505 TCGA-13-2065 
       38.17        37.61        13.97        32.84         4.21         8.75 
TCGA-20-1682 TCGA-20-1683 TCGA-23-1122 TCGA-23-2078 TCGA-23-2647 TCGA-24-0979 
       27.48        25.38        39.09        87.48         4.44        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1423 TCGA-24-1427 TCGA-24-1434 TCGA-24-1463 
        7.66        22.32         6.25         4.80        18.67        72.92 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1550 TCGA-24-1553 TCGA-24-1562 
       26.96        57.37        64.27        41.06        58.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1567 TCGA-24-1849 TCGA-24-1850 TCGA-24-1923 
       47.70        25.87        17.23         5.75         5.49        22.65 
TCGA-24-1924 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 TCGA-24-2038 TCGA-24-2262 
       30.21       109.68        14.43        18.48        44.48         0.36 
TCGA-24-2271 TCGA-24-2281 TCGA-24-2288 TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 
       31.63        44.58         0.82        16.64        55.86        53.26 
TCGA-25-1313 TCGA-25-1319 TCGA-25-1322 TCGA-25-1323 TCGA-25-1325 TCGA-25-1326 
       26.93        65.00         2.99        12.00        32.09        31.04 
TCGA-25-1328 TCGA-25-1623 TCGA-25-1626 TCGA-25-1628 TCGA-25-1630 TCGA-25-1633 
       65.06        18.58        15.78        20.58         7.86        60.59 
TCGA-25-2042 TCGA-25-2393 TCGA-25-2398 TCGA-25-2401 TCGA-25-2408 TCGA-29-1690 
       13.02        38.04        45.01         2.96        30.97        44.71 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1707 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
        0.53        16.90        41.95        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 TCGA-29-1783 
       24.36        22.52        17.29        11.84        12.30         7.20 
TCGA-29-1785 TCGA-29-2425 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2436 
       34.62        65.00         4.87        42.25        11.84         9.76 
TCGA-30-1718 TCGA-30-1856 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 
       51.91        15.68        24.26        30.05        48.79        45.57 
TCGA-31-1946 TCGA-31-1950 TCGA-36-1568 TCGA-36-1569 TCGA-36-1576 TCGA-36-1580 
       30.18        18.77        28.73        29.06        30.05        24.23 
TCGA-36-1581 TCGA-36-2540 TCGA-36-2543 TCGA-42-2587 TCGA-42-2588 TCGA-42-2590 
       24.69        23.80         2.24         9.07         9.44         7.46 
TCGA-42-2591 TCGA-59-2351 TCGA-59-2354 TCGA-59-2363 TCGA-61-1721 TCGA-61-1722 
        7.63       116.12        34.39         5.39        11.11         8.05 
TCGA-61-1895 TCGA-61-1900 TCGA-61-1906 TCGA-61-1907 TCGA-61-1918 TCGA-61-1919 
        1.41         5.79        34.13        31.30        15.75        38.17 
TCGA-61-2003 TCGA-61-2012 TCGA-61-2094 TCGA-61-2095 TCGA-61-2098 TCGA-61-2111 
        3.98        30.64        71.74        61.64        65.49       125.72 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       22.22        51.91         6.35        31.07         8.58 

$subtype4
TCGA-04-1348 TCGA-04-1525 TCGA-04-1644 TCGA-04-1651 TCGA-09-1674 TCGA-09-2044 
       48.76        38.37        48.89        36.23         8.55         6.12 
TCGA-09-2054 TCGA-09-2056 TCGA-10-0926 TCGA-10-0933 TCGA-10-0936 TCGA-13-0725 
       20.91        12.46        25.91        11.70        35.80        12.39 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0800 TCGA-13-0802 TCGA-13-0884 TCGA-13-0888 
       28.70        30.35         8.12         8.19       107.18        70.39 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0910 TCGA-13-0920 TCGA-13-1404 TCGA-13-1410 
       19.36        47.38        37.08        13.81         6.61         4.70 
TCGA-13-1482 TCGA-13-1484 TCGA-13-1487 TCGA-13-1489 TCGA-13-1492 TCGA-13-1499 
       61.71        98.04        22.39        82.88        73.55        38.37 
TCGA-13-1504 TCGA-13-1506 TCGA-13-1511 TCGA-13-1512 TCGA-13-2060 TCGA-13-2061 
       16.57         4.41         3.88         3.09         8.58        10.78 
TCGA-13-2066 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-23-1121 TCGA-23-1809 
        9.70        19.07        16.67         2.93         6.38         0.53 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0970 TCGA-24-1105 TCGA-24-1417 TCGA-24-1424 
        4.70         4.50        11.64        47.41         7.82         6.02 
TCGA-24-1467 TCGA-24-1474 TCGA-24-1556 TCGA-24-1558 TCGA-24-1614 TCGA-24-1842 
      105.99        22.19        70.62        19.53        48.33         8.32 
TCGA-24-1845 TCGA-24-2020 TCGA-24-2260 TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 
        3.81       151.99        36.16        51.06        37.02        34.98 
TCGA-25-1329 TCGA-25-1635 TCGA-25-1878 TCGA-25-2404 TCGA-29-1693 TCGA-29-1697 
        2.96        51.22        85.05        29.00       101.75        31.17 
TCGA-29-1703 TCGA-29-1762 TCGA-29-1764 TCGA-29-1781 TCGA-29-2427 TCGA-29-2428 
       59.67        85.68        62.93         8.35        62.47        45.11 
TCGA-29-2434 TCGA-36-1571 TCGA-36-1575 TCGA-36-1577 TCGA-36-2529 TCGA-36-2530 
       11.47        22.85         8.55        25.74        35.05        33.01 
TCGA-36-2537 TCGA-36-2542 TCGA-36-2548 TCGA-36-2552 TCGA-57-1586 TCGA-59-2349 
       25.91        21.60        14.17        11.47        22.32        80.12 
TCGA-59-2372 TCGA-61-1724 TCGA-61-1733 TCGA-61-1740 TCGA-61-2000 TCGA-61-2009 
       44.78        20.94        31.76         2.43        14.50        39.85 
TCGA-61-2101 TCGA-61-2102 
       55.50         6.48 

subtype1 subtype2 subtype3 subtype4 
    0.30     0.76     0.36     0.53 
subtype1 subtype2 subtype3 subtype4 
  115.89   180.16   125.72   151.99 
subtype1 subtype2 subtype3 subtype4 
  28.470   35.475   27.480   22.620 
[1] "0.3 - 115.9 (28.5)" "0.8 - 180.2 (35.5)" "0.4 - 125.7 (27.5)"
[4] "0.5 - 152.0 (22.6)"
  [1] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype4"
  [7] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype4" "subtype3" "subtype3"
 [19] "subtype4" "subtype1" "subtype2" "subtype1" "subtype4" "subtype2"
 [25] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [31] "subtype4" "subtype1" "subtype4" "subtype2" "subtype3" "subtype1"
 [37] "subtype4" "subtype2" "subtype4" "subtype3" "subtype4" "subtype1"
 [43] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype4"
 [49] "subtype1" "subtype1" "subtype4" "subtype1" "subtype4" "subtype1"
 [55] "subtype4" "subtype3" "subtype2" "subtype4" "subtype2" "subtype3"
 [61] "subtype2" "subtype2" "subtype4" "subtype4" "subtype3" "subtype4"
 [67] "subtype3" "subtype1" "subtype1" "subtype4" "subtype1" "subtype4"
 [73] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype4" "subtype3" "subtype4" "subtype4"
 [85] "subtype3" "subtype4" "subtype3" "subtype4" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype4" "subtype3" "subtype3" "subtype4"
 [97] "subtype3" "subtype4" "subtype2" "subtype2" "subtype4" "subtype4"
[103] "subtype1" "subtype4" "subtype4" "subtype3" "subtype4" "subtype3"
[109] "subtype3" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[115] "subtype1" "subtype2" "subtype4" "subtype3" "subtype1" "subtype2"
[121] "subtype4" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[127] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype4"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype4"
[139] "subtype1" "subtype4" "subtype1" "subtype2" "subtype3" "subtype4"
[145] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[151] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype2"
[157] "subtype2" "subtype1" "subtype4" "subtype3" "subtype3" "subtype3"
[163] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[169] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
[175] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[181] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype1"
[187] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[193] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[205] "subtype4" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[217] "subtype3" "subtype1" "subtype3" "subtype1" "subtype4" "subtype4"
[223] "subtype4" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype2"
[235] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[241] "subtype3" "subtype4" "subtype4" "subtype3" "subtype2" "subtype3"
[247] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[253] "subtype4" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[259] "subtype4" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[265] "subtype3" "subtype3" "subtype1" "subtype4" "subtype2" "subtype3"
[271] "subtype2" "subtype1" "subtype4" "subtype4" "subtype3" "subtype3"
[277] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[283] "subtype3" "subtype1" "subtype4" "subtype3" "subtype3" "subtype3"
[289] "subtype4" "subtype4" "subtype3" "subtype3" "subtype3" "subtype4"
[295] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[301] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[307] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[313] "subtype3" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
[319] "subtype1" "subtype3" "subtype3" "subtype4" "subtype4" "subtype1"
[325] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype3"
[331] "subtype2" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
[337] "subtype4" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[343] "subtype3" "subtype4" "subtype2" "subtype4" "subtype3" "subtype1"
[349] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype4"
[355] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype2"
[361] "subtype4" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[367] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[373] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype4"
[379] "subtype3" "subtype4" "subtype3" "subtype2" "subtype1" "subtype1"
[385] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[391] "subtype4" "subtype4" "subtype1" "subtype1" "subtype3" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype3"
  [1] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype4"
  [7] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype4" "subtype3" "subtype3"
 [19] "subtype4" "subtype1" "subtype2" "subtype1" "subtype4" "subtype2"
 [25] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [31] "subtype4" "subtype1" "subtype4" "subtype2" "subtype3" "subtype1"
 [37] "subtype4" "subtype2" "subtype4" "subtype3" "subtype4" "subtype1"
 [43] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype4"
 [49] "subtype1" "subtype1" "subtype4" "subtype1" "subtype4" "subtype1"
 [55] "subtype4" "subtype3" "subtype2" "subtype4" "subtype2" "subtype3"
 [61] "subtype2" "subtype2" "subtype4" "subtype4" "subtype3" "subtype4"
 [67] "subtype3" "subtype1" "subtype1" "subtype4" "subtype1" "subtype4"
 [73] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype4" "subtype3" "subtype4" "subtype4"
 [85] "subtype3" "subtype4" "subtype3" "subtype4" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype4" "subtype3" "subtype3" "subtype4"
 [97] "subtype3" "subtype4" "subtype2" "subtype2" "subtype4" "subtype4"
[103] "subtype1" "subtype4" "subtype4" "subtype3" "subtype4" "subtype3"
[109] "subtype3" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[115] "subtype1" "subtype2" "subtype4" "subtype3" "subtype1" "subtype2"
[121] "subtype4" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[127] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype4"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype4"
[139] "subtype1" "subtype4" "subtype1" "subtype2" "subtype3" "subtype4"
[145] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[151] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype2"
[157] "subtype2" "subtype1" "subtype4" "subtype3" "subtype3" "subtype3"
[163] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[169] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
[175] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[181] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype1"
[187] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[193] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[205] "subtype4" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[217] "subtype3" "subtype1" "subtype3" "subtype1" "subtype4" "subtype4"
[223] "subtype4" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype2"
[235] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[241] "subtype3" "subtype4" "subtype4" "subtype3" "subtype2" "subtype3"
[247] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[253] "subtype4" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[259] "subtype4" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[265] "subtype3" "subtype3" "subtype1" "subtype4" "subtype2" "subtype3"
[271] "subtype2" "subtype1" "subtype4" "subtype4" "subtype3" "subtype3"
[277] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[283] "subtype3" "subtype1" "subtype4" "subtype3" "subtype3" "subtype3"
[289] "subtype4" "subtype4" "subtype3" "subtype3" "subtype3" "subtype4"
[295] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[301] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[307] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[313] "subtype3" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
[319] "subtype1" "subtype3" "subtype3" "subtype4" "subtype4" "subtype1"
[325] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype3"
[331] "subtype2" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
[337] "subtype4" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[343] "subtype3" "subtype4" "subtype2" "subtype4" "subtype3" "subtype1"
[349] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype4"
[355] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype2"
[361] "subtype4" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[367] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[373] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype4"
[379] "subtype3" "subtype4" "subtype3" "subtype2" "subtype1" "subtype1"
[385] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[391] "subtype4" "subtype4" "subtype1" "subtype1" "subtype3" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype3"
  [1] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype4"
  [7] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype4" "subtype3" "subtype3"
 [19] "subtype4" "subtype1" "subtype2" "subtype1" "subtype4" "subtype2"
 [25] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [31] "subtype4" "subtype1" "subtype4" "subtype2" "subtype3" "subtype1"
 [37] "subtype4" "subtype2" "subtype4" "subtype3" "subtype4" "subtype1"
 [43] "subtype4" "subtype4" "subtype2" "subtype4" "subtype4" "subtype4"
 [49] "subtype1" "subtype1" "subtype4" "subtype1" "subtype4" "subtype1"
 [55] "subtype4" "subtype3" "subtype2" "subtype4" "subtype2" "subtype3"
 [61] "subtype2" "subtype2" "subtype4" "subtype4" "subtype3" "subtype4"
 [67] "subtype3" "subtype1" "subtype1" "subtype4" "subtype1" "subtype4"
 [73] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype4" "subtype3" "subtype4" "subtype4"
 [85] "subtype3" "subtype4" "subtype3" "subtype4" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype4" "subtype3" "subtype3" "subtype4"
 [97] "subtype3" "subtype4" "subtype2" "subtype2" "subtype4" "subtype4"
[103] "subtype1" "subtype4" "subtype4" "subtype3" "subtype4" "subtype3"
[109] "subtype3" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[115] "subtype1" "subtype2" "subtype4" "subtype3" "subtype1" "subtype2"
[121] "subtype4" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[127] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype4"
[133] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype4"
[139] "subtype1" "subtype4" "subtype1" "subtype2" "subtype3" "subtype4"
[145] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[151] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype2"
[157] "subtype2" "subtype1" "subtype4" "subtype3" "subtype3" "subtype3"
[163] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[169] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
[175] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[181] "subtype4" "subtype1" "subtype4" "subtype1" "subtype4" "subtype1"
[187] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[193] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[205] "subtype4" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[217] "subtype3" "subtype1" "subtype3" "subtype1" "subtype4" "subtype4"
[223] "subtype4" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[229] "subtype3" "subtype3" "subtype3" "subtype4" "subtype3" "subtype2"
[235] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[241] "subtype3" "subtype4" "subtype4" "subtype3" "subtype2" "subtype3"
[247] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[253] "subtype4" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[259] "subtype4" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[265] "subtype3" "subtype3" "subtype1" "subtype4" "subtype2" "subtype3"
[271] "subtype2" "subtype1" "subtype4" "subtype4" "subtype3" "subtype3"
[277] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[283] "subtype3" "subtype1" "subtype4" "subtype3" "subtype3" "subtype3"
[289] "subtype4" "subtype4" "subtype3" "subtype3" "subtype3" "subtype4"
[295] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[301] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[307] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[313] "subtype3" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
[319] "subtype1" "subtype3" "subtype3" "subtype4" "subtype4" "subtype1"
[325] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype3"
[331] "subtype2" "subtype2" "subtype1" "subtype4" "subtype1" "subtype1"
[337] "subtype4" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[343] "subtype3" "subtype4" "subtype2" "subtype4" "subtype3" "subtype1"
[349] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype4"
[355] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype2"
[361] "subtype4" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[367] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[373] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype4"
[379] "subtype3" "subtype4" "subtype3" "subtype2" "subtype1" "subtype1"
[385] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[391] "subtype4" "subtype4" "subtype1" "subtype1" "subtype3" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype3"
D8V2, continuous
D8V3, multiclass
D8V4, continuous
D8V5, multiclass
D8V6, binary
          cls
clus         0   1
  subtype1   0 101
  subtype2   0  68
  subtype3   1 144
  subtype4   1  92
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0  101
  subtype2    0   68
  subtype3    1  144
  subtype4    1   92
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         0        0        1        1
  YES      101       68      144       92
D8V7, binary
          cls
clus         0   1
  subtype1  80  21
  subtype2  54  14
  subtype3 117  28
  subtype4  83  10
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   80   21
  subtype2   54   14
  subtype3  117   28
  subtype4   83   10
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        80       54      117       83
  YES       21       14       28       10

Clustering(9) Variable = MRNASEQ_CNMF
D9V1, survival
          sevent
clus2       0  1
  subtype1 38 42
  subtype2 37 63
  subtype3 51 64
subtype1 subtype2 subtype3 
      80      100      115 
subtype1 subtype2 subtype3 
      42       63       64 
$subtype1
TCGA-04-1348 TCGA-04-1362 TCGA-04-1365 TCGA-09-0366 TCGA-09-0367 TCGA-09-1666 
       48.76        44.32        76.54        57.73        17.95        57.57 
TCGA-09-1670 TCGA-09-2045 TCGA-09-2051 TCGA-09-2056 TCGA-10-0936 TCGA-13-0801 
       17.98        35.15        63.09        12.46        35.80         8.28 
TCGA-13-0893 TCGA-13-0924 TCGA-13-1489 TCGA-20-1685 TCGA-23-1026 TCGA-23-2081 
       43.36         6.08        82.88        16.67        26.83        77.00 
TCGA-23-2084 TCGA-24-1103 TCGA-24-1413 TCGA-24-1416 TCGA-24-1423 TCGA-24-1428 
       49.84        54.08         6.31         6.38         6.25        17.36 
TCGA-24-1467 TCGA-24-1551 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1847 
      105.99        51.91        88.50        70.62        39.88        11.28 
TCGA-24-1924 TCGA-24-2019 TCGA-24-2023 TCGA-24-2038 TCGA-24-2267 TCGA-24-2281 
       30.21         4.87        44.84        44.48        47.54        44.58 
TCGA-24-2290 TCGA-25-1313 TCGA-25-1318 TCGA-25-1322 TCGA-25-1625 TCGA-25-1630 
       36.23        26.93        34.98         2.99        18.02         7.86 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2396 TCGA-25-2397 TCGA-25-2404 TCGA-25-2409 
       49.05         1.02         3.02        12.00        29.00        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1694 TCGA-29-1696 TCGA-29-1776 TCGA-29-1778 
       78.87        44.71        38.53        33.70        11.84        14.93 
TCGA-29-1784 TCGA-30-1860 TCGA-31-1944 TCGA-31-1950 TCGA-36-1568 TCGA-36-1570 
        5.36        44.91        45.57        18.77        28.73        21.53 
TCGA-36-1574 TCGA-36-1578 TCGA-36-1581 TCGA-57-1584 TCGA-57-1993 TCGA-59-2351 
       22.55        27.85        24.69        21.14        25.05       116.12 
TCGA-59-2355 TCGA-61-1724 TCGA-61-1736 TCGA-61-1907 TCGA-61-1910 TCGA-61-1914 
        2.14        20.94        48.79        31.30        37.02        56.58 
TCGA-61-1918 TCGA-61-2008 TCGA-61-2016 TCGA-61-2092 TCGA-61-2094 TCGA-61-2097 
       15.75        30.61         1.18        51.72        71.74        60.62 
TCGA-61-2104 TCGA-61-2109 
       76.83        20.68 

$subtype2
TCGA-04-1364 TCGA-04-1514 TCGA-09-0364 TCGA-09-0369 TCGA-09-1669 TCGA-09-1673 
       33.67        56.55        29.16        35.54        30.48         3.02 
TCGA-09-1674 TCGA-09-2044 TCGA-09-2048 TCGA-09-2054 TCGA-10-0928 TCGA-13-0730 
        8.55         6.12         4.50        20.91        18.48        17.79 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0899 TCGA-13-0913 TCGA-13-0916 TCGA-13-0920 
        7.79         8.12        56.15        29.98        21.14        13.81 
TCGA-13-1506 TCGA-20-1683 TCGA-20-1684 TCGA-23-1029 TCGA-23-1111 TCGA-23-1114 
        4.41        25.38        19.07         8.81         3.22        68.68 
TCGA-23-1122 TCGA-23-1123 TCGA-23-1809 TCGA-23-2077 TCGA-24-1419 TCGA-24-1424 
       39.09        33.47         0.53       115.89         7.86         6.02 
TCGA-24-1430 TCGA-24-1469 TCGA-24-1474 TCGA-24-1544 TCGA-24-1548 TCGA-24-1549 
       28.34         9.11        22.19        26.96        16.21        56.58 
TCGA-24-1553 TCGA-24-1558 TCGA-24-1560 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       58.09        19.53        44.09        17.23        90.15        88.34 
TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 TCGA-24-2020 TCGA-24-2027 TCGA-24-2033 
       38.24         3.48         3.72       151.99       109.68        18.48 
TCGA-24-2036 TCGA-24-2254 TCGA-24-2297 TCGA-25-1312 TCGA-25-1315 TCGA-25-1316 
       64.01        57.07        55.86         1.02        51.06        37.02 
TCGA-25-1317 TCGA-25-1319 TCGA-25-1321 TCGA-25-1323 TCGA-25-1324 TCGA-25-1627 
        1.02        65.00        33.96        12.00        34.03         0.36 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-2393 
        0.30        56.94        35.54        14.93        24.99        38.04 
TCGA-25-2400 TCGA-29-1691 TCGA-29-1697 TCGA-29-1702 TCGA-29-1703 TCGA-29-1761 
       42.02        47.18        31.17        18.64        59.67        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1783 TCGA-29-2414 TCGA-29-2425 TCGA-36-1571 
       85.68        66.77         7.20        86.17        65.00        22.85 
TCGA-36-1575 TCGA-36-1577 TCGA-57-1583 TCGA-57-1994 TCGA-59-2350 TCGA-59-2352 
        8.55        25.74        11.38        25.02        22.32         9.40 
TCGA-59-2363 TCGA-61-1728 TCGA-61-1738 TCGA-61-1741 TCGA-61-1743 TCGA-61-1900 
        5.39        27.88        35.80        33.67        43.69         5.79 
TCGA-61-1917 TCGA-61-1995 TCGA-61-1998 TCGA-61-2012 TCGA-61-2088 TCGA-61-2095 
       43.43         1.97         5.52        30.64         4.77        61.64 
TCGA-61-2098 TCGA-61-2102 TCGA-61-2110 TCGA-61-2111 
       65.49         6.48        44.52       125.72 

$subtype3
TCGA-09-1659 TCGA-09-1662 TCGA-09-1667 TCGA-09-1668 TCGA-13-0883 TCGA-13-0890 
        9.96        89.33        61.87        55.36        68.91        67.99 
TCGA-13-0897 TCGA-13-1403 TCGA-13-1405 TCGA-13-1410 TCGA-13-1411 TCGA-13-1481 
       57.47        10.88         7.36         4.70         4.21        87.06 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1505 TCGA-13-1507 TCGA-13-1511 TCGA-13-1512 
       54.31        37.61         4.21         4.77         3.88         3.09 
TCGA-13-2060 TCGA-20-1682 TCGA-20-1687 TCGA-23-1023 TCGA-23-1027 TCGA-23-1109 
        8.58        27.48         2.66        40.54        31.73        51.35 
TCGA-23-1120 TCGA-23-2078 TCGA-24-0975 TCGA-24-1417 TCGA-24-1418 TCGA-24-1422 
        4.27        87.48        21.80         7.82         7.99         0.76 
TCGA-24-1425 TCGA-24-1427 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
        5.95         4.80        18.67        43.53         8.55        72.92 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1550 TCGA-24-1552 TCGA-24-1562 TCGA-24-1563 
       57.37        64.27        41.06        41.39        45.50        47.70 
TCGA-24-1564 TCGA-24-1842 TCGA-24-1846 TCGA-24-1849 TCGA-24-1850 TCGA-24-1928 
       25.87         8.32         4.37         5.75         5.49        11.05 
TCGA-24-1930 TCGA-24-2024 TCGA-24-2026 TCGA-24-2035 TCGA-24-2261 TCGA-24-2262 
       81.11        58.16        34.82        28.18         0.79         0.36 
TCGA-24-2271 TCGA-24-2288 TCGA-24-2289 TCGA-24-2293 TCGA-24-2298 TCGA-25-1314 
       31.63         0.82        67.36        16.64        53.26        31.99 
TCGA-25-1320 TCGA-25-1326 TCGA-25-1328 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 
       36.95        31.04        65.06         2.96        18.58        15.78 
TCGA-25-1628 TCGA-25-1633 TCGA-25-1635 TCGA-25-2042 TCGA-25-2398 TCGA-25-2399 
       20.58        60.59        51.22        13.02        45.01        19.99 
TCGA-25-2401 TCGA-29-1693 TCGA-29-1695 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 
        2.96       101.75         0.79        68.28         0.53        16.90 
TCGA-29-1705 TCGA-29-1710 TCGA-29-1711 TCGA-29-1770 TCGA-29-1781 TCGA-29-1785 
       18.25        29.23        34.62        24.36         8.35        34.62 
TCGA-29-2427 TCGA-29-2428 TCGA-30-1718 TCGA-30-1855 TCGA-30-1861 TCGA-30-1862 
       62.47        45.11        51.91         2.47        34.78         6.08 
TCGA-30-1891 TCGA-31-1946 TCGA-31-1951 TCGA-31-1953 TCGA-31-1956 TCGA-31-1959 
       30.05        30.18        22.45         6.71        44.09         2.17 
TCGA-36-1569 TCGA-36-1576 TCGA-36-1580 TCGA-57-1582 TCGA-57-1585 TCGA-59-2348 
       29.06        30.05        24.23        24.03         1.74       180.16 
TCGA-59-2354 TCGA-61-1721 TCGA-61-1725 TCGA-61-1733 TCGA-61-1737 TCGA-61-1740 
       34.39        11.11        31.40        31.76        44.84         2.43 
TCGA-61-1919 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2009 TCGA-61-2101 
       38.17        14.50        17.98         3.98        39.85        55.50 
TCGA-61-2113 
       22.22 

subtype1 subtype2 subtype3 
    1.02     0.30     0.36 
subtype1 subtype2 subtype3 
  116.12   151.99   180.16 
subtype1 subtype2 subtype3 
  30.955   26.350   27.480 
[1] "1.0 - 116.1 (31.0)" "0.3 - 152.0 (26.4)" "0.4 - 180.2 (27.5)"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
  [7] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [25] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [31] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [61] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [85] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[121] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[127] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[133] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[145] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[151] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[157] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[169] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[175] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[181] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[187] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[193] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[211] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[217] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[223] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[229] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[235] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[241] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[247] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[253] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[259] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[271] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[277] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[283] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[289] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[295] "subtype3"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
  [7] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [25] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [31] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [61] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [85] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[121] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[127] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[133] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[145] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[151] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[157] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[169] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[175] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[181] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[187] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[193] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[211] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[217] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[223] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[229] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[235] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[241] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[247] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[253] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[259] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[271] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[277] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[283] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[289] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[295] "subtype3"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
  [7] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [25] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [31] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
 [61] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [73] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [85] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[121] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[127] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[133] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[139] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[145] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[151] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[157] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[163] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[169] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[175] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[181] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[187] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[193] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[211] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[217] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[223] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[229] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[235] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[241] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[247] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[253] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[259] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[271] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[277] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[283] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[289] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[295] "subtype3"
D9V2, continuous
D9V3, multiclass
         clus
vv        subtype1 subtype2 subtype3
  OMENTUM        1        0        1
  OVARY         80      101      114
D9V4, continuous
[1] "Remove cluster labels:" "subtype1"              
clus
subtype1 subtype2 subtype3 
       2        3       11 
 [1] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [7] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[13] "subtype3" "subtype3"
D9V5, multiclass
D9V6, binary
          cls
clus         0   1
  subtype1   0  81
  subtype2   2  99
  subtype3   0 115
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   81
  subtype2    2   99
  subtype3    0  115
     clus
vv    subtype1 subtype2 subtype3
  NO         0        2        0
  YES       81       99      115
D9V7, binary
          cls
clus        0  1
  subtype1 63 18
  subtype2 85 16
  subtype3 93 22
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   63   18
  subtype2   85   16
  subtype3   93   22
     clus
vv    subtype1 subtype2 subtype3
  NO        63       85       93
  YES       18       16       22

Clustering(10) Variable = MRNASEQ_CHIERARCHICAL
D10V1, survival
          sevent
clus2       0  1
  subtype1 11 24
  subtype2 43 71
  subtype3 72 74
subtype1 subtype2 subtype3 
      35      114      146 
subtype1 subtype2 subtype3 
      24       71       74 
$subtype1
TCGA-09-1659 TCGA-09-1662 TCGA-09-2045 TCGA-09-2051 TCGA-09-2056 TCGA-13-0883 
        9.96        89.33        35.15        63.09        12.46        68.91 
TCGA-23-1111 TCGA-23-2084 TCGA-24-1551 TCGA-24-1847 TCGA-24-2023 TCGA-24-2038 
        3.22        49.84        51.91        11.28        44.84        44.48 
TCGA-24-2254 TCGA-25-1313 TCGA-25-1318 TCGA-25-1322 TCGA-25-1328 TCGA-25-1625 
       57.07        26.93        34.98         2.99        65.06        18.02 
TCGA-25-1630 TCGA-25-1631 TCGA-25-2391 TCGA-25-2392 TCGA-25-2409 TCGA-29-1690 
        7.86         0.30        49.05         1.02        26.96        44.71 
TCGA-31-1944 TCGA-36-1568 TCGA-57-1584 TCGA-59-2355 TCGA-61-1721 TCGA-61-1724 
       45.57        28.73        21.14         2.14        11.11        20.94 
TCGA-61-2003 TCGA-61-2008 TCGA-61-2016 TCGA-61-2095 TCGA-61-2097 
        3.98        30.61         1.18        61.64        60.62 

$subtype2
TCGA-04-1362 TCGA-04-1364 TCGA-04-1514 TCGA-09-0364 TCGA-09-0366 TCGA-09-0367 
       44.32        33.67        56.55        29.16        57.73        17.95 
TCGA-09-0369 TCGA-09-1666 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 TCGA-09-1674 
       35.54        57.57        30.48        17.98         3.02         8.55 
TCGA-09-2048 TCGA-09-2054 TCGA-10-0928 TCGA-10-0936 TCGA-13-0730 TCGA-13-0799 
        4.50        20.91        18.48        35.80        17.79         7.79 
TCGA-13-0800 TCGA-13-0913 TCGA-13-0916 TCGA-13-0920 TCGA-13-1506 TCGA-20-1684 
        8.12        29.98        21.14        13.81         4.41        19.07 
TCGA-20-1685 TCGA-23-1023 TCGA-23-1029 TCGA-23-1114 TCGA-23-1122 TCGA-23-1123 
       16.67        40.54         8.81        68.68        39.09        33.47 
TCGA-23-1809 TCGA-23-2077 TCGA-24-1103 TCGA-24-1413 TCGA-24-1416 TCGA-24-1419 
        0.53       115.89        54.08         6.31         6.38         7.86 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1430 TCGA-24-1467 TCGA-24-1474 TCGA-24-1544 
        6.25         6.02        28.34       105.99        22.19        26.96 
TCGA-24-1548 TCGA-24-1550 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       16.21        41.06        58.09        88.50        70.62        39.88 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1616 
       19.53        44.09        17.23        90.15        88.34        38.24 
TCGA-24-1844 TCGA-24-1850 TCGA-24-2019 TCGA-24-2020 TCGA-24-2027 TCGA-24-2036 
        3.72         5.49         4.87       151.99       109.68        64.01 
TCGA-24-2297 TCGA-25-1312 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1319 
       55.86         1.02        51.06        37.02         1.02        65.00 
TCGA-25-1321 TCGA-25-1323 TCGA-25-1324 TCGA-25-1632 TCGA-25-1634 TCGA-25-1870 
       33.96        12.00        34.03        56.94        35.54        14.93 
TCGA-25-1871 TCGA-25-2393 TCGA-25-2397 TCGA-25-2400 TCGA-29-1691 TCGA-29-1696 
       24.99        38.04        12.00        42.02        47.18        33.70 
TCGA-29-1697 TCGA-29-1702 TCGA-29-1703 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 
       31.17        18.64        59.67        17.00        85.68        66.77 
TCGA-29-1783 TCGA-31-1950 TCGA-36-1570 TCGA-36-1571 TCGA-36-1575 TCGA-36-1577 
        7.20        18.77        21.53        22.85         8.55        25.74 
TCGA-57-1583 TCGA-57-1993 TCGA-57-1994 TCGA-59-2350 TCGA-59-2352 TCGA-59-2363 
       11.38        25.05        25.02        22.32         9.40         5.39 
TCGA-61-1728 TCGA-61-1736 TCGA-61-1738 TCGA-61-1741 TCGA-61-1743 TCGA-61-1900 
       27.88        48.79        35.80        33.67        43.69         5.79 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1917 TCGA-61-1918 TCGA-61-1995 TCGA-61-1998 
       31.30        37.02        43.43        15.75         1.97         5.52 
TCGA-61-2088 TCGA-61-2098 TCGA-61-2102 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
        4.77        65.49         6.48        20.68        44.52       125.72 

$subtype3
TCGA-04-1348 TCGA-04-1365 TCGA-09-1667 TCGA-09-1668 TCGA-09-2044 TCGA-13-0801 
       48.76        76.54        61.87        55.36         6.12         8.28 
TCGA-13-0890 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0924 TCGA-13-1403 
       67.99        43.36        57.47        56.15         6.08        10.88 
TCGA-13-1405 TCGA-13-1410 TCGA-13-1411 TCGA-13-1481 TCGA-13-1489 TCGA-13-1497 
        7.36         4.70         4.21        87.06        82.88        54.31 
TCGA-13-1498 TCGA-13-1505 TCGA-13-1507 TCGA-13-1511 TCGA-13-1512 TCGA-13-2060 
       37.61         4.21         4.77         3.88         3.09         8.58 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1687 TCGA-23-1026 TCGA-23-1027 TCGA-23-1109 
       27.48        25.38         2.66        26.83        31.73        51.35 
TCGA-23-1120 TCGA-23-2078 TCGA-23-2081 TCGA-24-0975 TCGA-24-1417 TCGA-24-1418 
        4.27        87.48        77.00        21.80         7.82         7.99 
TCGA-24-1422 TCGA-24-1425 TCGA-24-1427 TCGA-24-1428 TCGA-24-1434 TCGA-24-1435 
        0.76         5.95         4.80        17.36        18.67        43.53 
TCGA-24-1436 TCGA-24-1463 TCGA-24-1469 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 
        8.55        72.92         9.11        57.37        64.27        56.58 
TCGA-24-1552 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1842 TCGA-24-1843 
       41.39        45.50        47.70        25.87         8.32         3.48 
TCGA-24-1846 TCGA-24-1849 TCGA-24-1924 TCGA-24-1928 TCGA-24-1930 TCGA-24-2024 
        4.37         5.75        30.21        11.05        81.11        58.16 
TCGA-24-2026 TCGA-24-2033 TCGA-24-2035 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 
       34.82        18.48        28.18         0.79         0.36        47.54 
TCGA-24-2271 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       31.63        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2298 TCGA-25-1314 TCGA-25-1320 TCGA-25-1326 TCGA-25-1329 TCGA-25-1623 
       53.26        31.99        36.95        31.04         2.96        18.58 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1633 TCGA-25-1635 TCGA-25-2042 
       15.78         0.36        20.58        60.59        51.22        13.02 
TCGA-25-2396 TCGA-25-2398 TCGA-25-2399 TCGA-25-2401 TCGA-25-2404 TCGA-29-1688 
        3.02        45.01        19.99         2.96        29.00        78.87 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 
      101.75        38.53         0.79        68.28         0.53        16.90 
TCGA-29-1705 TCGA-29-1710 TCGA-29-1711 TCGA-29-1770 TCGA-29-1776 TCGA-29-1778 
       18.25        29.23        34.62        24.36        11.84        14.93 
TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 
        8.35         5.36        34.62        86.17        65.00        62.47 
TCGA-29-2428 TCGA-30-1718 TCGA-30-1855 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 
       45.11        51.91         2.47        44.91        34.78         6.08 
TCGA-30-1891 TCGA-31-1946 TCGA-31-1951 TCGA-31-1953 TCGA-31-1956 TCGA-31-1959 
       30.05        30.18        22.45         6.71        44.09         2.17 
TCGA-36-1569 TCGA-36-1574 TCGA-36-1576 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 
       29.06        22.55        30.05        27.85        24.23        24.69 
TCGA-57-1582 TCGA-57-1585 TCGA-59-2348 TCGA-59-2351 TCGA-59-2354 TCGA-61-1725 
       24.03         1.74       180.16       116.12        34.39        31.40 
TCGA-61-1733 TCGA-61-1737 TCGA-61-1740 TCGA-61-1914 TCGA-61-1919 TCGA-61-2000 
       31.76        44.84         2.43        56.58        38.17        14.50 
TCGA-61-2002 TCGA-61-2009 TCGA-61-2012 TCGA-61-2092 TCGA-61-2094 TCGA-61-2101 
       17.98        39.85        30.64        51.72        71.74        55.50 
TCGA-61-2104 TCGA-61-2113 
       76.83        22.22 

subtype1 subtype2 subtype3 
    0.30     0.53     0.36 
subtype1 subtype2 subtype3 
   89.33   151.99   180.16 
subtype1 subtype2 subtype3 
   28.73    27.42    29.03 
[1] "0.3 - 89.3 (28.7)"  "0.5 - 152.0 (27.4)" "0.4 - 180.2 (29.0)"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [13] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [31] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[121] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[151] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[157] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[163] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[169] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[175] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[181] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[187] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[229] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[235] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[241] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[247] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[253] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[259] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[271] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[277] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[283] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[289] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[295] "subtype3"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [13] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [31] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[121] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[151] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[157] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[163] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[169] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[175] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[181] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[187] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[229] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[235] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[241] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[247] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[253] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[259] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[271] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[277] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[283] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[289] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[295] "subtype3"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [13] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [31] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [55] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [61] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [85] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[121] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[151] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[157] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[163] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[169] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[175] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[181] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[187] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[199] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[223] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[229] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[235] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[241] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[247] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[253] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[259] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[271] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[277] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
[283] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[289] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[295] "subtype3"
D10V2, continuous
D10V3, multiclass
         clus
vv        subtype1 subtype2 subtype3
  OMENTUM        0        0        2
  OVARY         35      115      145
D10V4, continuous
D10V5, multiclass
D10V6, binary
          cls
clus         0   1
  subtype1   0  35
  subtype2   1 114
  subtype3   1 146
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   35
  subtype2    1  114
  subtype3    1  146
     clus
vv    subtype1 subtype2 subtype3
  NO         0        1        1
  YES       35      114      146
D10V7, binary
          cls
clus         0   1
  subtype1  27   8
  subtype2  95  20
  subtype3 119  28
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   27    8
  subtype2   95   20
  subtype3  119   28
     clus
vv    subtype1 subtype2 subtype3
  NO        27       95      119
  YES        8       20       28

Clustering(11) Variable = MIRSEQ_CNMF
D11V1, survival
          sevent
clus2        0   1
  subtype1  39  74
  subtype2  93 101
  subtype3  67  77
subtype1 subtype2 subtype3 
     113      194      144 
subtype1 subtype2 subtype3 
      74      101       77 
$subtype1
TCGA-04-1331 TCGA-04-1332 TCGA-04-1346 TCGA-04-1349 TCGA-09-1662 TCGA-09-2054 
       40.24        41.00        65.49        21.57        89.33        20.91 
TCGA-13-0768 TCGA-13-0890 TCGA-13-0894 TCGA-13-0900 TCGA-13-1405 TCGA-13-1408 
        8.42        67.99        49.61        57.07         7.36         5.92 
TCGA-13-1411 TCGA-13-1477 TCGA-13-1481 TCGA-13-1485 TCGA-13-1487 TCGA-13-1499 
        4.21        54.61        87.06        20.68        22.39        38.37 
TCGA-13-1505 TCGA-13-2060 TCGA-23-1026 TCGA-23-1121 TCGA-23-2078 TCGA-23-2081 
        4.21         8.58        26.83         6.38        87.48        77.00 
TCGA-24-0968 TCGA-24-0970 TCGA-24-1418 TCGA-24-1422 TCGA-24-1427 TCGA-24-1434 
       19.63        11.64         7.99         0.76         4.80        18.67 
TCGA-24-1546 TCGA-24-1550 TCGA-24-1556 TCGA-24-1563 TCGA-24-1842 TCGA-24-1843 
       64.27        41.06        70.62        47.70         8.32         3.48 
TCGA-24-1846 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1928 
        4.37         5.75         5.49         9.80        22.65        11.05 
TCGA-24-1930 TCGA-24-2020 TCGA-24-2024 TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 
       81.11       151.99        58.16        14.43        18.48        28.18 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
       36.16         0.79         0.36        31.63        70.45        44.58 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2298 TCGA-25-1316 TCGA-25-1320 
       67.36        36.23        16.64        53.26        37.02        36.95 
TCGA-25-1326 TCGA-25-1328 TCGA-25-1626 TCGA-25-1628 TCGA-25-1633 TCGA-25-1877 
       31.04        65.06        15.78        20.58        60.59        18.05 
TCGA-25-2042 TCGA-25-2396 TCGA-25-2398 TCGA-25-2399 TCGA-25-2401 TCGA-25-2404 
       13.02         3.02        45.01        19.99         2.96        29.00 
TCGA-25-2408 TCGA-25-2409 TCGA-29-1695 TCGA-29-1698 TCGA-29-1702 TCGA-29-1703 
       30.97        26.96         0.79        68.28        18.64        59.67 
TCGA-29-1705 TCGA-29-1710 TCGA-29-1766 TCGA-29-1768 TCGA-29-2414 TCGA-29-2427 
       18.25        29.23        39.09        31.23        86.17        62.47 
TCGA-30-1857 TCGA-30-1861 TCGA-30-1862 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
        0.26        34.78         6.08         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 TCGA-31-1953 
       30.05        48.79        45.57        30.18        22.45         6.71 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1574 TCGA-36-1576 TCGA-57-1585 TCGA-59-2354 
       44.09         2.17        22.55        30.05         1.74        34.39 
TCGA-61-1721 TCGA-61-1724 TCGA-61-1733 TCGA-61-1919 TCGA-61-2002 TCGA-61-2003 
       11.11        20.94        31.76        38.17        17.98         3.98 
TCGA-61-2009 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2113 
       39.85        55.50         6.48        76.83        22.22 

$subtype2
TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 TCGA-04-1347 TCGA-04-1348 TCGA-04-1350 
       49.15         2.01        18.51        63.06        48.76        63.98 
TCGA-04-1356 TCGA-04-1365 TCGA-04-1367 TCGA-04-1530 TCGA-04-1536 TCGA-04-1646 
       49.28        76.54        71.47       119.08        29.06        27.88 
TCGA-04-1654 TCGA-09-0366 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       47.70        57.73        41.59        57.57        61.87        55.36 
TCGA-09-1673 TCGA-09-1674 TCGA-10-0926 TCGA-10-0927 TCGA-13-0714 TCGA-13-0720 
        3.02         8.55        25.91        81.47         6.21        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0751 TCGA-13-0757 TCGA-13-0760 TCGA-13-0766 
       39.58         2.73        55.17        11.18        11.54        21.40 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0805 
        8.71         7.79         8.28         8.19        43.82        35.28 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 
       68.91       107.18        91.40        74.27        66.64        61.81 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       69.01        43.36        19.36        47.38        48.33        47.84 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0916 TCGA-13-0919 TCGA-13-0923 
       44.84        37.08        27.68        21.14        14.89         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1407 TCGA-13-1409 TCGA-13-1410 
        6.08        10.88         6.61         6.05         6.84         4.70 
TCGA-13-1412 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1488 TCGA-13-1491 
        5.33        61.71        29.39        98.04        70.82        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 
       73.55        38.17        49.22         4.24        54.31        37.61 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       13.97        32.84        16.57         4.41         4.77         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
        2.56         3.88         3.09        23.05        25.94        26.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1687 TCGA-23-1021 TCGA-23-1023 
       27.48        25.38        19.07         2.66        47.54        40.54 
TCGA-23-1027 TCGA-23-1028 TCGA-23-1030 TCGA-23-1032 TCGA-23-1107 TCGA-23-1109 
       31.73        49.41        29.10         2.24         0.30        51.35 
TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1118 TCGA-23-1122 TCGA-23-1123 
       54.51        31.20        68.68        86.01        39.09        33.47 
TCGA-23-1124 TCGA-23-2079 TCGA-24-0975 TCGA-24-1104 TCGA-24-1105 TCGA-24-1417 
       58.13        91.66        21.80        63.55        47.41         7.82 
TCGA-24-1423 TCGA-24-1425 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1435 
        6.25         5.95        17.36        28.34        19.17        43.53 
TCGA-24-1436 TCGA-24-1463 TCGA-24-1466 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
        8.55        72.92        45.14         9.11         3.42         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1548 TCGA-24-1551 TCGA-24-1552 
       22.19        26.96        57.37        16.21        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1558 TCGA-24-1562 TCGA-24-1564 TCGA-24-1603 
       58.09        88.50        19.53        45.50        25.87        90.15 
TCGA-24-1604 TCGA-24-1614 TCGA-24-1845 TCGA-24-1924 TCGA-24-2026 TCGA-24-2030 
       88.34        48.33         3.81        30.21        34.82        53.95 
TCGA-24-2288 TCGA-25-1312 TCGA-25-1314 TCGA-25-1318 TCGA-25-1319 TCGA-25-1324 
        0.82         1.02        31.99        34.98        65.00        34.03 
TCGA-25-1325 TCGA-25-1329 TCGA-25-1623 TCGA-25-1632 TCGA-25-1635 TCGA-25-2397 
       32.09         2.96        18.58        56.94        51.22        12.00 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1697 TCGA-29-1699 
       78.87        44.71        47.18       101.75        31.17         0.53 
TCGA-29-1701 TCGA-29-1707 TCGA-29-1711 TCGA-29-1764 TCGA-29-1769 TCGA-29-1770 
       16.90        41.95        34.62        62.93        22.98        24.36 
TCGA-29-1776 TCGA-29-1777 TCGA-29-1784 TCGA-29-1785 TCGA-29-2425 TCGA-29-2428 
       11.84        12.30         5.36        34.62        65.00        45.11 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1859 TCGA-30-1860 
       51.91        36.26         2.47        15.68        48.07        44.91 
TCGA-30-1866 TCGA-36-1569 TCGA-36-1575 TCGA-36-1578 TCGA-36-1581 TCGA-57-1582 
       36.62        29.06         8.55        27.85        24.69        24.03 
TCGA-57-1583 TCGA-59-2348 TCGA-59-2350 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       11.38       180.16        22.32        35.80         2.43        33.67 
TCGA-61-1895 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-2000 
        1.41        31.30        37.02        42.48        48.92        14.50 
TCGA-61-2012 TCGA-61-2111 
       30.64       125.72 

$subtype3
TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1514 TCGA-04-1517 TCGA-04-1525 
       32.52        44.32        33.67        56.55        19.99        38.37 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 
       84.20        55.40        28.64        64.64        36.23        31.86 
TCGA-04-1655 TCGA-09-0364 TCGA-09-1661 TCGA-09-1669 TCGA-09-1670 TCGA-09-2044 
       45.34        29.16        38.43        30.48        17.98         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2056 
       35.15         4.50        71.11        63.09        39.75        12.46 
TCGA-10-0928 TCGA-10-0933 TCGA-10-0934 TCGA-13-0755 TCGA-13-0791 TCGA-13-0792 
       18.48        11.70         3.88         2.47        38.93        36.72 
TCGA-13-0800 TCGA-13-0888 TCGA-13-0906 TCGA-13-0912 TCGA-13-0913 TCGA-13-0920 
        8.12        70.39        44.94        34.06        29.98        13.81 
TCGA-13-0921 TCGA-13-1489 TCGA-20-1685 TCGA-20-1686 TCGA-23-1022 TCGA-23-1029 
        4.64        82.88        16.67         2.93        42.51         8.81 
TCGA-23-1111 TCGA-23-1119 TCGA-23-1120 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 
        3.22       129.96         4.27         0.53        24.95       115.89 
TCGA-23-2084 TCGA-24-0966 TCGA-24-0979 TCGA-24-0982 TCGA-24-1103 TCGA-24-1413 
       49.84         7.63        41.56        22.32        54.08         6.31 
TCGA-24-1416 TCGA-24-1419 TCGA-24-1424 TCGA-24-1426 TCGA-24-1464 TCGA-24-1467 
        6.38         7.86         6.02         5.36        12.46       105.99 
TCGA-24-1549 TCGA-24-1557 TCGA-24-1560 TCGA-24-1565 TCGA-24-1567 TCGA-24-1616 
       56.58        39.88        44.09        10.26        17.23        38.24 
TCGA-24-1844 TCGA-24-1847 TCGA-24-2019 TCGA-24-2023 TCGA-24-2027 TCGA-24-2036 
        3.72        11.28         4.87        44.84       109.68        64.01 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2267 TCGA-24-2297 TCGA-25-1313 TCGA-25-1315 
       44.48        57.07        47.54        55.86        26.93        51.06 
TCGA-25-1317 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1625 TCGA-25-1627 
        1.02        33.96         2.99        12.00        18.02         0.36 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 
        7.86         0.30        35.54        14.93        24.99        85.05 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2400 TCGA-29-1694 TCGA-29-1696 
       49.05         1.02        38.04        42.02        38.53        33.70 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1771 TCGA-29-1774 TCGA-29-1778 
       17.00        85.68        66.77        22.52        17.29        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-30-1714 TCGA-31-1950 TCGA-36-1568 TCGA-36-1570 
        8.35         7.20        38.07        18.77        28.73        21.53 
TCGA-36-1571 TCGA-36-1577 TCGA-36-1580 TCGA-57-1584 TCGA-57-1586 TCGA-57-1993 
       22.85        25.74        24.23        21.14        22.32        25.05 
TCGA-57-1994 TCGA-59-2351 TCGA-59-2352 TCGA-59-2355 TCGA-59-2363 TCGA-61-1725 
       25.02       116.12         9.40         2.14         5.39        31.40 
TCGA-61-1728 TCGA-61-1736 TCGA-61-1737 TCGA-61-1743 TCGA-61-1899 TCGA-61-1900 
       27.88        48.79        44.84        43.69         8.42         5.79 
TCGA-61-1901 TCGA-61-1906 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       11.41        34.13        56.58        67.73        43.43        15.75 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2008 TCGA-61-2016 TCGA-61-2088 TCGA-61-2092 
        1.97         5.52        30.61         1.18         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2097 TCGA-61-2098 TCGA-61-2109 TCGA-61-2110 
       71.74        61.64        60.62        65.49        20.68        44.52 

subtype1 subtype2 subtype3 
    0.26     0.30     0.30 
subtype1 subtype2 subtype3 
  151.99   180.16   129.96 
subtype1 subtype2 subtype3 
  26.960   32.465   28.685 
[1] "0.3 - 152.0 (27.0)" "0.3 - 180.2 (32.5)" "0.3 - 130.0 (28.7)"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [55] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[109] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[151] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[175] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[181] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[187] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[193] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[199] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[217] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[223] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[229] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[235] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[247] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[253] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[259] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[265] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[271] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[277] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[283] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[289] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[295] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[301] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[307] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[313] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[325] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[331] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[337] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[343] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[349] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[355] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[367] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[373] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[379] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[385] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[391] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[397] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[403] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[409] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[415] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[421] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[427] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[433] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[439] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[445] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[451] "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [55] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[109] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[151] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[175] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[181] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[187] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[193] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[199] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[217] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[223] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[229] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[235] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[247] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[253] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[259] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[265] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[271] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[277] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[283] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[289] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[295] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[301] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[307] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[313] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[325] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[331] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[337] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[343] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[349] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[355] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[367] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[373] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[379] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[385] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[391] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[397] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[403] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[409] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[415] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[421] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[427] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[433] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[439] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[445] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[451] "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [49] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [55] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [85] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[109] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[145] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[151] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[163] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[175] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[181] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[187] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[193] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[199] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[217] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[223] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[229] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[235] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[247] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[253] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[259] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[265] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[271] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[277] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[283] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[289] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[295] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[301] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[307] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[313] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[325] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[331] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[337] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[343] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[349] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[355] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[367] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[373] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[379] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[385] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[391] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[397] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[403] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[409] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[415] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[421] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[427] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[433] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[439] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[445] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[451] "subtype1"
D11V2, continuous
D11V3, multiclass
D11V4, continuous
D11V5, multiclass
D11V6, binary
          cls
clus         0   1
  subtype1   0 113
  subtype2   1 194
  subtype3   2 144
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0  113
  subtype2    1  194
  subtype3    2  144
     clus
vv    subtype1 subtype2 subtype3
  NO         0        1        2
  YES      113      194      144
D11V7, binary
          cls
clus         0   1
  subtype1  89  24
  subtype2 162  33
  subtype3 116  30
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   89   24
  subtype2  162   33
  subtype3  116   30
     clus
vv    subtype1 subtype2 subtype3
  NO        89      162      116
  YES       24       33       30

Clustering(12) Variable = MIRSEQ_CHIERARCHICAL
D12V1, survival
          sevent
clus2        0   1
  subtype1   0   3
  subtype2  69  82
  subtype3 130 167
subtype1 subtype2 subtype3 
       3      151      297 
subtype1 subtype2 subtype3 
       3       82      167 
$subtype1
TCGA-04-1364 TCGA-09-2048 TCGA-25-1633 
       33.67         4.50        60.59 

$subtype2
TCGA-04-1361 TCGA-04-1362 TCGA-04-1514 TCGA-04-1517 TCGA-04-1525 TCGA-04-1542 
       32.52        44.32        56.55        19.99        38.37        84.20 
TCGA-04-1638 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1655 
       55.40        28.64        64.64        36.23        31.86        45.34 
TCGA-09-0364 TCGA-09-1661 TCGA-09-1669 TCGA-09-1670 TCGA-09-2044 TCGA-09-2045 
       29.16        38.43        30.48        17.98         6.12        35.15 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2056 TCGA-10-0928 TCGA-10-0933 
       71.11        63.09        39.75        12.46        18.48        11.70 
TCGA-10-0934 TCGA-13-0755 TCGA-13-0791 TCGA-13-0792 TCGA-13-0800 TCGA-13-0888 
        3.88         2.47        38.93        36.72         8.12        70.39 
TCGA-13-0906 TCGA-13-0912 TCGA-13-0913 TCGA-13-0920 TCGA-13-0921 TCGA-13-1489 
       44.94        34.06        29.98        13.81         4.64        82.88 
TCGA-20-0987 TCGA-20-1685 TCGA-20-1686 TCGA-23-1022 TCGA-23-1029 TCGA-23-1110 
       23.05        16.67         2.93        42.51         8.81        54.51 
TCGA-23-1111 TCGA-23-1114 TCGA-23-1119 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 
        3.22        68.68       129.96         0.53        24.95       115.89 
TCGA-23-2084 TCGA-24-0966 TCGA-24-0979 TCGA-24-0982 TCGA-24-1103 TCGA-24-1413 
       49.84         7.63        41.56        22.32        54.08         6.31 
TCGA-24-1416 TCGA-24-1419 TCGA-24-1423 TCGA-24-1424 TCGA-24-1426 TCGA-24-1464 
        6.38         7.86         6.25         6.02         5.36        12.46 
TCGA-24-1467 TCGA-24-1544 TCGA-24-1553 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 
      105.99        26.96        58.09        39.88        19.53        44.09 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1604 TCGA-24-1616 TCGA-24-1844 TCGA-24-1847 
       10.26        17.23        88.34        38.24         3.72        11.28 
TCGA-24-1923 TCGA-24-2019 TCGA-24-2023 TCGA-24-2027 TCGA-24-2036 TCGA-24-2038 
       22.65         4.87        44.84       109.68        64.01        44.48 
TCGA-24-2254 TCGA-24-2267 TCGA-24-2297 TCGA-25-1312 TCGA-25-1315 TCGA-25-1317 
       57.07        47.54        55.86         1.02        51.06         1.02 
TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1625 TCGA-25-1627 TCGA-25-1630 
       33.96         2.99        12.00        18.02         0.36         7.86 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 
        0.30        56.94        35.54        14.93        24.99        85.05 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2400 TCGA-25-2404 TCGA-29-1694 
       49.05         1.02        38.04        42.02        29.00        38.53 
TCGA-29-1696 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1771 TCGA-29-1774 
       33.70        17.00        85.68        66.77        22.52        17.29 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-30-1714 TCGA-31-1950 TCGA-36-1568 
       14.93         8.35         7.20        38.07        18.77        28.73 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1577 TCGA-36-1580 TCGA-57-1584 TCGA-57-1586 
       21.53        22.85        25.74        24.23        21.14        22.32 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2351 TCGA-59-2352 TCGA-59-2355 TCGA-59-2363 
       25.05        25.02       116.12         9.40         2.14         5.39 
TCGA-61-1721 TCGA-61-1725 TCGA-61-1728 TCGA-61-1736 TCGA-61-1737 TCGA-61-1899 
       11.11        31.40        27.88        48.79        44.84         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1906 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 
        5.79        11.41        34.13        56.58        67.73        43.43 
TCGA-61-1918 TCGA-61-1995 TCGA-61-1998 TCGA-61-2003 TCGA-61-2008 TCGA-61-2016 
       15.75         1.97         5.52         3.98        30.61         1.18 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2097 TCGA-61-2098 TCGA-61-2109 
       51.72        71.74        61.64        60.62        65.49        20.68 
TCGA-61-2110 
       44.52 

$subtype3
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 TCGA-04-1346 
       40.24        41.00        49.15         2.01        18.51        65.49 
TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 TCGA-04-1365 
       63.06        48.76        21.57        63.98        49.28        76.54 
TCGA-04-1367 TCGA-04-1530 TCGA-04-1536 TCGA-04-1646 TCGA-04-1654 TCGA-09-0366 
       71.47       119.08        29.06        27.88        47.70        57.73 
TCGA-09-1662 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1673 
       89.33        41.59        57.57        61.87        55.36         3.02 
TCGA-09-1674 TCGA-09-2054 TCGA-10-0926 TCGA-10-0927 TCGA-13-0714 TCGA-13-0720 
        8.55        20.91        25.91        81.47         6.21        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0751 TCGA-13-0757 TCGA-13-0760 TCGA-13-0766 
       39.58         2.73        55.17        11.18        11.54        21.40 
TCGA-13-0768 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 
        8.42         8.71         7.79         8.28         8.19        43.82 
TCGA-13-0805 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       35.28        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0894 TCGA-13-0900 
       61.81        67.99        69.01        43.36        49.61        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0908 TCGA-13-0910 
       19.36        47.38        48.33        47.84        44.84        37.08 
TCGA-13-0911 TCGA-13-0916 TCGA-13-0919 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       27.68        21.14        14.89         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
        6.61         7.36         6.05         5.92         6.84         4.70 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.21         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 
       98.04        20.68        22.39        70.82        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       38.17        49.22         4.24        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       13.97        32.84        16.57         4.21         4.41         4.77 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2060 TCGA-20-0990 
        4.14         2.56         3.88         3.09         8.58        25.94 
TCGA-20-0991 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1687 TCGA-23-1021 
       26.20        27.48        25.38        19.07         2.66        47.54 
TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1030 TCGA-23-1032 
       40.54        26.83        31.73        49.41        29.10         2.24 
TCGA-23-1107 TCGA-23-1109 TCGA-23-1113 TCGA-23-1118 TCGA-23-1120 TCGA-23-1121 
        0.30        51.35        31.20        86.01         4.27         6.38 
TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
       39.09        33.47        58.13        87.48        91.66        77.00 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-1104 TCGA-24-1105 TCGA-24-1417 
       19.63        11.64        21.80        63.55        47.41         7.82 
TCGA-24-1418 TCGA-24-1422 TCGA-24-1425 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 
        7.99         0.76         5.95         4.80        17.36        28.34 
TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1466 
       19.17        18.67        43.53         8.55        72.92        45.14 
TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1545 TCGA-24-1546 
        9.11         3.42         1.18        22.19        57.37        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 
       16.21        56.58        41.06        51.91        41.39        88.50 
TCGA-24-1556 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1603 TCGA-24-1614 
       70.62        45.50        47.70        25.87        90.15        48.33 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 TCGA-24-1850 
        8.32         3.48         3.81         4.37         5.75         5.49 
TCGA-24-1920 TCGA-24-1924 TCGA-24-1928 TCGA-24-1930 TCGA-24-2020 TCGA-24-2024 
        9.80        30.21        11.05        81.11       151.99        58.16 
TCGA-24-2026 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2260 
       34.82        14.43        53.95        18.48        28.18        36.16 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
        0.79         0.36        31.63        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 
       67.36        36.23        16.64        53.26        26.93        31.99 
TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1324 TCGA-25-1325 
       37.02        34.98        65.00        36.95        34.03        32.09 
TCGA-25-1326 TCGA-25-1328 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 TCGA-25-1628 
       31.04        65.06         2.96        18.58        15.78        20.58 
TCGA-25-1635 TCGA-25-1877 TCGA-25-2042 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       51.22        18.05        13.02         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2401 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
       19.99         2.96        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1695 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 
       47.18       101.75         0.79        31.17        68.28         0.53 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       16.90        18.64        59.67        18.25        41.95        29.23 
TCGA-29-1711 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 
       34.62        62.93        39.09        31.23        22.98        24.36 
TCGA-29-1776 TCGA-29-1777 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
       11.84        12.30         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2428 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 
       62.47        45.11        51.91        36.26         2.47        15.68 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 
        0.26        48.07        44.91        34.78         6.08        36.62 
TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 
        1.18        57.57        24.26        30.05        48.79        45.57 
TCGA-31-1946 TCGA-31-1951 TCGA-31-1953 TCGA-31-1956 TCGA-31-1959 TCGA-36-1569 
       30.18        22.45         6.71        44.09         2.17        29.06 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1578 TCGA-36-1581 TCGA-57-1582 
       22.55         8.55        30.05        27.85        24.69        24.03 
TCGA-57-1583 TCGA-57-1585 TCGA-59-2348 TCGA-59-2350 TCGA-59-2354 TCGA-61-1724 
       11.38         1.74       180.16        22.32        34.39        20.94 
TCGA-61-1733 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 
       31.76        35.80         2.43        33.67        43.69         1.41 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1919 TCGA-61-2000 
       31.30        37.02        42.48        48.92        38.17        14.50 
TCGA-61-2002 TCGA-61-2009 TCGA-61-2012 TCGA-61-2088 TCGA-61-2101 TCGA-61-2102 
       17.98        39.85        30.64         4.77        55.50         6.48 
TCGA-61-2104 TCGA-61-2111 TCGA-61-2113 
       76.83       125.72        22.22 

subtype1 subtype2 subtype3 
    4.50     0.30     0.26 
subtype1 subtype2 subtype3 
   60.59   129.96   180.16 
subtype1 subtype2 subtype3 
   33.67    28.64    30.97 
[1] "4.5 - 60.6 (33.7)"  "0.3 - 130.0 (28.6)" "0.3 - 180.2 (31.0)"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [13] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [37] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[163] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[175] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[193] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[199] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[205] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[223] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[229] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[235] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[241] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[247] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[253] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[259] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[265] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[271] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[277] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[283] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[289] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[295] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[301] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[307] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[313] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[319] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[325] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[331] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[337] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[343] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[349] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[355] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[361] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[367] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[373] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[379] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[385] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[391] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[397] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[403] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[409] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[415] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[421] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[427] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[433] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[439] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[445] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[451] "subtype3"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [13] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [37] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[163] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[175] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[193] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[199] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[205] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[223] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[229] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[235] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[241] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[247] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[253] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[259] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[265] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[271] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[277] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[283] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[289] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[295] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[301] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[307] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[313] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[319] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[325] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[331] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[337] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[343] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[349] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[355] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[361] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[367] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[373] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[379] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[385] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[391] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[397] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[403] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[409] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[415] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[421] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[427] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[433] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[439] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[445] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[451] "subtype3"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [13] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [31] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [37] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [61] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[157] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[163] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[175] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[193] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[199] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[205] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[223] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[229] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[235] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[241] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[247] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[253] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[259] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[265] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[271] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[277] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[283] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[289] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[295] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[301] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[307] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[313] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[319] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[325] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[331] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[337] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[343] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[349] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[355] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[361] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[367] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[373] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[379] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[385] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[391] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[397] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[403] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[409] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[415] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[421] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[427] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[433] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[439] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[445] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[451] "subtype3"
D12V2, continuous
D12V3, multiclass
D12V4, continuous
D12V5, multiclass
D12V6, binary
          cls
clus         0   1
  subtype1   0   3
  subtype2   2 151
  subtype3   1 297
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0    3
  subtype2    2  151
  subtype3    1  297
     clus
vv    subtype1 subtype2 subtype3
  NO         0        2        1
  YES        3      151      297
D12V7, binary
          cls
clus         0   1
  subtype1   3   0
  subtype2 121  32
  subtype3 243  55
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3    0
  subtype2  121   32
  subtype3  243   55
     clus
vv    subtype1 subtype2 subtype3
  NO         3      121      243
  YES        0       32       55
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
               "PRIMARY.SITE.OF.DISEASE" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                           "TUMOR.STAGE" 
                                      V6 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V7 
                   "NEOADJUVANT.THERAPY" 
> q(save="no")
