# Created: Fri Oct 19 15:46:43 EDT 2012 by cgaadm_interactive
# Job: 199247    server:  http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/
# Module: GDAC_MutSig_Report urn:lsid:broadinstitute.org:cancer.genome.analysis:00413:33
# Parameters: 
#    bar_plot = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/OV/1782474/0.MutSigRun.Finished/OV.bargraphs.png
#    breakdown_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/OV/1782474/0.MutSigRun.Finished/OV.mutation_breakdown.txt
#    categories_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/OV/1782474/0.MutSigRun.Finished/OV.mutation_rates.txt
#    coverage.png = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/OV/1782474/0.MutSigRun.Finished/OV.covplot.png
#    sig_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/OV/1782474/0.MutSigRun.Finished/OV.sig_genes.txt
#    cosmic_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/OV/1782474/0.MutSigRun.Finished/OV.cosmic_sig_genes.txt
#    cosmic_table2 = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/OV/1782474/0.MutSigRun.Finished/OV.cosmic_sig_genes2.txt
#    cosmic_muts_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/OV/1782474/0.MutSigRun.Finished/OV.cosmic_mutations.txt
#    cluster_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/OV/1782474/0.MutSigRun.Finished/OV.clustered_muts.txt
#    geneset_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/OV/1782474/0.MutSigRun.Finished/OV.sig_genesets.txt
#    genset_table2 = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/OV/1782474/0.MutSigRun.Finished/OV.sig_genesets_2.txt
#    patients_c_and_r = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/OV/1782474/0.MutSigRun.Finished/OV.patients.counts_and_rates.txt
#    ind_set = OV
#    mutsig_version = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/OV/1782474/0.MutSigRun.Finished/OV.MutSig_version.txt
#    coMut_plot_png = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/CoMut/OV/1783250/0.CoMut.Finished/OV_coMut.png
#    coMut_plot_pdf = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/CoMut/OV/1783250/0.CoMut.Finished/OV_coMut.pdf
#    stick_figures_path = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GenerateStickFigures/OV/1783252/0.GenerateStickFigures.Finished/generatedStickFigurePaths.txt
#    maf_path = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/OV/1782474/0.MutSigRun.Finished/OV.final_analysis_set.maf
#    mut_pre_rep_path = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/OV/1781371/0.MutSigPreprocess.Finished/OV.mutation_preprocessing_report.txt
#    mut_filt_rep_path = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/OV/1782474/0.MutSigRun.Finished/OV.mutation_filtering_report.txt
