
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvsarms_onlysig.11.3769/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvsarms_onlysig.11.3769/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/226700/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/BLCA/1971848/1.GDAC_clinicalDataPicker.Finished/BLCA.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=BLCA", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"      "-oT=BLCA"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=102, in cluster file=97, common to both=88
[1] "Reduce the number of clustering variables from 80 to 71."
[1] 71 88
[1] "1p gain mutation analysis"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               11                77 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               11                77 
[1] "1q gain mutation analysis"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               20                68 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               20                68 
[1] "2p gain mutation analysis"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               18                70 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               18                70 
[1] "2q gain mutation analysis"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                5                83 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                5                83 
[1] "3p gain mutation analysis"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               19                69 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               19                69 
[1] "3q gain mutation analysis"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               24                64 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               24                64 
[1] "4p gain mutation analysis"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                8                80 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                8                80 
[1] "4q gain mutation analysis"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                4                84 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                4                84 
[1] "5p gain mutation analysis"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               26                62 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               26                62 
[1] "5q gain mutation analysis"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               13                75 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               13                75 
[1] "6p gain mutation analysis"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                5                83 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                5                83 
[1] "6q gain mutation analysis"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                3                85 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                3                85 
[1] "7p gain mutation analysis"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               29                59 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               29                59 
[1] "7q gain mutation analysis"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               28                60 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               28                60 
[1] "8p gain mutation analysis"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               14                74 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               14                74 
[1] "8q gain mutation analysis"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               31                57 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               31                57 
[1] "9p gain mutation analysis"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               12                76 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               12                76 
[1] "9q gain mutation analysis"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               11                77 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               11                77 
[1] "10p gain mutation analysis"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                19                 69 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                19                 69 
[1] "10q gain mutation analysis"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 5                 83 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 5                 83 
[1] "11p gain mutation analysis"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 4                 84 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 4                 84 
[1] "11q gain mutation analysis"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 3                 85 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 3                 85 
[1] "12p gain mutation analysis"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                18                 70 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                18                 70 
[1] "12q gain mutation analysis"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                14                 74 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                14                 74 
[1] "13q gain mutation analysis"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                16                 72 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                16                 72 
[1] "14q gain mutation analysis"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 8                 80 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 8                 80 
[1] "15q gain mutation analysis"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 4                 84 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 4                 84 
[1] "16p gain mutation analysis"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 8                 80 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 8                 80 
[1] "16q gain mutation analysis"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                10                 78 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                10                 78 
[1] "17p gain mutation analysis"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 6                 82 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 6                 82 
[1] "17q gain mutation analysis"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                14                 74 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                14                 74 
[1] "18p gain mutation analysis"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                15                 73 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                15                 73 
[1] "18q gain mutation analysis"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 6                 82 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 6                 82 
[1] "19p gain mutation analysis"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 9                 79 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 9                 79 
[1] "19q gain mutation analysis"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                18                 70 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                18                 70 
[1] "20p gain mutation analysis"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                36                 52 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                36                 52 
[1] "20q gain mutation analysis"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                37                 51 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                37                 51 
[1] "21q gain mutation analysis"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                17                 71 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                17                 71 
[1] "22q gain mutation analysis"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 9                 79 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 9                 79 
[1] "Xq gain mutation analysis"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                5                83 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                5                83 
[1] "2p loss mutation analysis"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                5                83 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                5                83 
[1] "2q loss mutation analysis"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               11                77 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               11                77 
[1] "3p loss mutation analysis"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                7                81 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                7                81 
[1] "4p loss mutation analysis"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               14                74 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               14                74 
[1] "4q loss mutation analysis"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               15                73 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               15                73 
[1] "5p loss mutation analysis"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                9                79 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                9                79 
[1] "5q loss mutation analysis"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               19                69 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               19                69 
[1] "6p loss mutation analysis"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               11                77 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               11                77 
[1] "6q loss mutation analysis"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               17                71 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               17                71 
[1] "8p loss mutation analysis"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               27                61 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               27                61 
[1] "8q loss mutation analysis"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                3                85 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                3                85 
[1] "9p loss mutation analysis"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               28                60 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               28                60 
[1] "9q loss mutation analysis"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               25                63 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               25                63 
[1] "10p loss mutation analysis"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                13                 75 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                13                 75 
[1] "10q loss mutation analysis"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                14                 74 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                14                 74 
[1] "11p loss mutation analysis"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                31                 57 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                31                 57 
[1] "11q loss mutation analysis"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                24                 64 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                24                 64 
[1] "13q loss mutation analysis"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                13                 75 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                13                 75 
[1] "14q loss mutation analysis"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                13                 75 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                13                 75 
[1] "15q loss mutation analysis"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                12                 76 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                12                 76 
[1] "16p loss mutation analysis"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                11                 77 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                11                 77 
[1] "16q loss mutation analysis"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                10                 78 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                10                 78 
[1] "17p loss mutation analysis"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                29                 59 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                29                 59 
[1] "17q loss mutation analysis"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 4                 84 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 4                 84 
[1] "18p loss mutation analysis"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                13                 75 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                13                 75 
[1] "18q loss mutation analysis"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                22                 66 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                22                 66 
[1] "19p loss mutation analysis"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 4                 84 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 4                 84 
[1] "19q loss mutation analysis"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 3                 85 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 3                 85 
[1] "20p loss mutation analysis"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 3                 85 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 3                 85 
[1] "21q loss mutation analysis"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                 9                 79 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                 9                 79 
[1] "22q loss mutation analysis"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                17                 71 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                17                 71 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "RADIATIONS.RADIATION.REGIMENINDICATION"
[12] "NEOADJUVANTTHERAPY"                    
[13] "BATCHNUMBER"                           

Input Data has 13 rows and 88 columns.

[1] "Batch" "13"   
[1] "Last Follow UP"
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
         389           NA           NA           NA           NA          363 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
          NA           NA           NA           NA           NA           NA 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
          NA           NA           NA           NA           NA          179 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
         111           NA           NA           59           61           14 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A3MG TCGA-CF-A3MH TCGA-CU-A0YN TCGA-CU-A0YO 
          13           21           NA           NA           NA           NA 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
         219          166           77           NA          955          273 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
         214          271         3616         3056          218          178 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK 
         202           55          322           NA         2291           67 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV 
         121          238          319         1151          168           NA 
TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
        1108          268          253           NA          209           NA 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EF 
         336          272          242          974           71         1884 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
         806          172           NA          997          525          214 
TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
          NA           68          234           64           95          177 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QG TCGA-GV-A3QH 
         133          160          187          173           NA          237 
TCGA-GV-A3QI TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-HQ-A2OE 
         125           46          204           NA 
Variable 1:'AGE':	nDistinctValues=41,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=25,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=58,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=11,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=6,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 13:'BATCH.NUMBER':	nDistinctValues=16,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                         "GENDER"                     
[3] "KARNOFSKY.PERFORMANCE.SCORE"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 88 columns, 1 survival variables, and 3 non-survival variables.
AGE, nv=41, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=6, binary=FALSE, numeric=TRUE

Clustering(1) Variable = 1p gain mutation analysis
D1V1, survival
                   sevent
clus2                0  1
  1P GAIN MUTATED    7  4
  1P GAIN WILD-TYPE 51 22
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               11                73 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                4                22 
$`1P GAIN MUTATED`
TCGA-BT-A20T TCGA-BT-A2LA TCGA-C4-A0EZ TCGA-CU-A0YN TCGA-DK-A2I1 TCGA-DK-A2I2 
       14.89         5.88         8.98        12.30        10.59         7.76 
TCGA-DK-A3IM TCGA-FT-A3EE TCGA-GD-A3OS TCGA-GV-A3JZ TCGA-GV-A3QI 
        7.82         2.33         5.82         5.69         4.11 

$`1P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PH 
        8.61         5.06         8.35         8.25         3.65         4.64 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YO 
        1.94         2.01         0.46         0.43         0.69         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
        7.20         5.46         2.53         2.14        31.40         8.98 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        7.04         8.91       118.88       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IQ 
        6.64         1.81        75.32         2.20         3.98        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 
       37.84         5.52         9.67        36.43         8.81         8.32 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.94         6.87         4.01        11.05         8.94         7.96 
TCGA-FD-A3NA TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
       32.02        61.94        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP 
       17.26         7.04        20.12         2.24         7.69         2.10 
TCGA-GD-A3OQ TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QH TCGA-H4-A2HO 
        3.12         4.37         5.26         6.15         7.79         1.51 
TCGA-H4-A2HQ 
        6.71 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             2.33              0.43 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            14.89            118.88 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             7.76              7.20 
[1] "2.3 - 14.9 (7.8)"  "0.4 - 118.9 (7.2)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      5    6
  1P GAIN WILD-TYPE   22   55
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  FEMALE               5                22
  MALE                 6                55
D1V4, continuous

Clustering(2) Variable = 1q gain mutation analysis
D2V1, survival
                   sevent
clus2                0  1
  1Q GAIN MUTATED   12  7
  1Q GAIN WILD-TYPE 46 19
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               19                65 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
                7                19 
$`1Q GAIN MUTATED`
TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A2LA TCGA-C4-A0EZ 
        2.66         6.74        14.89         5.06         5.88         8.98 
TCGA-CU-A0YN TCGA-DK-A1A3 TCGA-DK-A1AD TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IM 
       12.30         2.53       100.47        10.59         7.76         7.82 
TCGA-FT-A3EE TCGA-GD-A2C5 TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ 
        2.33         7.69         5.82         4.37         6.15         5.69 
TCGA-GV-A3QI 
        4.11 

$`1Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N 
       12.79         7.33         6.58        11.93        19.00        26.10 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20W 
       12.16        17.85        19.46         5.06         8.61         8.35 
TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        8.25         3.65         4.64         1.94         2.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A5 
        0.43         0.69         4.90         7.20         5.46         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE 
       31.40         8.98         7.04         8.91       118.88         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
        5.85         6.64         1.81        75.32         2.20         3.98 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 
       10.49        37.84         5.52         9.67        36.43         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.32         8.94         6.87         4.01        11.05         8.94 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        7.96        32.02        61.94        26.50         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A3OP 
       32.78        17.26         7.04        20.12         2.24         2.10 
TCGA-GD-A3OQ TCGA-GV-A3JW TCGA-GV-A3QH TCGA-H4-A2HO TCGA-H4-A2HQ 
        3.12         5.26         7.79         1.51         6.71 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             2.33              0.43 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           100.47            118.88 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             6.15              7.79 
[1] "2.3 - 100.5 (6.2)" "0.4 - 118.9 (7.8)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
[1] "hr=" "2"  
D2V2, continuous
D2V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED      7   13
  1Q GAIN WILD-TYPE   20   48
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  FEMALE               7                20
  MALE                13                48
D2V4, continuous

Clustering(3) Variable = 2p gain mutation analysis
D3V1, survival
                   sevent
clus2                0  1
  2P GAIN MUTATED   12  4
  2P GAIN WILD-TYPE 46 22
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               16                68 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                4                22 
$`2P GAIN MUTATED`
TCGA-BT-A0YX TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F6 
       11.93         5.06         8.35         3.65         8.98         2.01 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AC TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 
       31.40         8.98       118.88        10.59         7.76        75.32 
TCGA-FT-A3EE TCGA-GD-A2C5 TCGA-GD-A3OS TCGA-GV-A3QH 
        2.33         7.69         5.82         7.79 

$`2P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20J 
       12.79         7.33         2.66         6.74         6.58        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A3PH TCGA-C4-A0F0 TCGA-CF-A1HR 
        8.61         8.25         5.88         4.64         1.94         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.43         0.69        12.30         4.90         7.20         5.46 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE 
        2.53         2.14         7.04         8.91       100.47         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
        5.85         6.64         1.81         2.20         3.98         7.82 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 
       10.49        37.84         5.52         9.67        36.43         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.32         8.94         6.87         4.01        11.05         8.94 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        7.96        32.02        61.94        26.50         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A3OP 
       32.78        17.26         7.04        20.12         2.24         2.10 
TCGA-GD-A3OQ TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QI 
        3.12         4.37         5.26         6.15         5.69         4.11 
TCGA-H4-A2HO TCGA-H4-A2HQ 
        1.51         6.71 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             2.01              0.43 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           118.88            100.47 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             8.07              7.04 
[1] "2.0 - 118.9 (8.1)" "0.4 - 100.5 (7.0)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     11    7
  2P GAIN WILD-TYPE   16   54
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  FEMALE              11                16
  MALE                 7                54
D3V4, continuous

Clustering(4) Variable = 2q gain mutation analysis
D4V1, survival
                   sevent
clus2                0  1
  2Q GAIN MUTATED    3  1
  2Q GAIN WILD-TYPE 55 25
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                4                80 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                1                25 
$`2Q GAIN MUTATED`
TCGA-DK-A1A6 TCGA-DK-A2I2 TCGA-GD-A3OS TCGA-GV-A3QH 
       31.40         7.76         5.82         7.79 

$`2Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        3.65         4.64         8.98         1.94         2.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.43         0.69        12.30         4.90         7.20         5.46 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        2.53         2.14         8.98         7.04         8.91       118.88 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 
      100.47         7.17         5.85         6.64         1.81        10.59 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS 
       75.32         2.20         3.98         7.82        10.49        37.84 
TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
        5.52         9.67        36.43         8.81         8.32         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        6.87         4.01        11.05         8.94         7.96        32.02 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        2.33        61.94        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP 
       17.26         7.04        20.12         2.24         7.69         2.10 
TCGA-GD-A3OQ TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QI 
        3.12         4.37         5.26         6.15         5.69         4.11 
TCGA-H4-A2HO TCGA-H4-A2HQ 
        1.51         6.71 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             5.82              0.43 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            31.40            118.88 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            7.775             7.185 
[1] "5.8 - 31.4 (7.8)"  "0.4 - 118.9 (7.2)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      2    3
  2Q GAIN WILD-TYPE   25   58
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  FEMALE               2                25
  MALE                 3                58
D4V4, continuous

Clustering(5) Variable = 3p gain mutation analysis
D5V1, survival
                   sevent
clus2                0  1
  3P GAIN MUTATED   14  3
  3P GAIN WILD-TYPE 44 23
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               17                67 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                3                23 
$`3P GAIN MUTATED`
TCGA-BL-A13J TCGA-BT-A2LA TCGA-BT-A3PH TCGA-CF-A1HR TCGA-DK-A1A3 TCGA-DK-A1A5 
        2.66         5.88         4.64         0.46         2.53         2.14 
TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-E5-A2PC TCGA-FT-A3EE 
      100.47         1.81        10.59        75.32        36.43         2.33 
TCGA-GC-A3I6 TCGA-GD-A3OP TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW 
        2.24         2.10         5.82         4.37         5.26 

$`3P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         6.74         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-C4-A0EZ 
        8.61         5.06         8.35         8.25         3.65         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        1.94         2.01         0.43         0.69        12.30         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        7.20         5.46        31.40         8.98         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I2 TCGA-DK-A3IK 
      118.88         7.17         5.85         6.64         7.76         2.20 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV 
        3.98         7.82        10.49        37.84         5.52         9.67 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        8.81         8.32         8.94         6.87         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK 
        8.94         7.96        32.02        61.94        26.50         5.65 
TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GD-A2C5 
       26.93        32.78        17.26         7.04        20.12         7.69 
TCGA-GD-A3OQ TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO 
        3.12         6.15         5.69         7.79         4.11         1.51 
TCGA-H4-A2HQ 
        6.71 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             0.46              0.43 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           100.47            118.88 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             4.37              7.82 
[1] "0.5 - 100.5 (4.4)" "0.4 - 118.9 (7.8)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      6   13
  3P GAIN WILD-TYPE   21   48
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  FEMALE               6                21
  MALE                13                48
D5V4, continuous

Clustering(6) Variable = 3q gain mutation analysis
D6V1, survival
                   sevent
clus2                0  1
  3Q GAIN MUTATED   19  3
  3Q GAIN WILD-TYPE 39 23
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               22                62 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
                3                23 
$`3Q GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A0YX TCGA-BT-A20V TCGA-BT-A2LA TCGA-BT-A3PH 
       12.79         2.66        11.93         5.06         5.88         4.64 
TCGA-CF-A1HR TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A2HX 
        0.46         5.46         2.53        31.40         8.98         1.81 
TCGA-DK-A2I1 TCGA-E5-A2PC TCGA-FD-A3N5 TCGA-G2-A2EJ TCGA-GC-A3I6 TCGA-GD-A3OS 
       10.59        36.43         8.94        26.50         2.24         5.82 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3QH TCGA-H4-A2HQ 
        4.37         5.26         7.79         6.71 

$`3Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O 
        7.33         6.74         6.58        19.00        26.10        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W 
       17.85        19.46         5.06        14.89         8.61         8.35 
TCGA-BT-A20X TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HS 
        8.25         3.65         8.98         1.94         2.01         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-DK-A1A5 TCGA-DK-A1AA 
        0.69        12.30         4.90         7.20         2.14         7.04 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        8.91       118.88       100.47         7.17         5.85         6.64 
TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ 
        7.76        75.32         2.20         3.98         7.82        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
       37.84         5.52         9.67         8.81         8.32         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE 
        6.87         4.01        11.05         7.96        32.02         2.33 
TCGA-G2-A2EF TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
       61.94         5.65        26.93        32.78        17.26         7.04 
TCGA-G2-A3IE TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GV-A3JX TCGA-GV-A3JZ 
       20.12         7.69         2.10         3.12         6.15         5.69 
TCGA-GV-A3QI TCGA-H4-A2HO 
        4.11         1.51 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             0.46              0.43 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            36.43            118.88 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            5.850             7.725 
[1] "0.5 - 36.4 (5.8)"  "0.4 - 118.9 (7.7)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
[1] "hr=" "2.2"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED      9   15
  3Q GAIN WILD-TYPE   18   46
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  FEMALE               9                18
  MALE                15                46
D6V4, continuous

Clustering(7) Variable = 4p gain mutation analysis
D7V1, survival
                   sevent
clus2                0  1
  4P GAIN MUTATED    7  1
  4P GAIN WILD-TYPE 51 25
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                8                76 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                1                25 
$`4P GAIN MUTATED`
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AC 
        1.94         2.01         5.46         2.14        31.40       118.88 
TCGA-FD-A3NA TCGA-G2-A2EF 
       32.02        61.94 

$`4P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
        3.65         4.64         8.98         0.46         0.43         0.69 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-DK-A1A3 TCGA-DK-A1A7 TCGA-DK-A1AA 
       12.30         4.90         7.20         2.53         8.98         7.04 
TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
        8.91       100.47         7.17         5.85         6.64         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
       10.59         7.76        75.32         2.20         3.98         7.82 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 
       10.49        37.84         5.52         9.67        36.43         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.32         8.94         6.87         4.01        11.05         8.94 
TCGA-FD-A3N6 TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        7.96         2.33        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP 
       17.26         7.04        20.12         2.24         7.69         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ 
        3.12         5.82         4.37         5.26         6.15         5.69 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO TCGA-H4-A2HQ 
        7.79         4.11         1.51         6.71 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             1.94              0.43 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           118.88            100.47 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           18.430             7.265 
[1] "1.9 - 118.9 (18.4)" "0.4 - 100.5 (7.3)" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "hr=" "5"  
D7V2, continuous
D7V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      1    7
  4P GAIN WILD-TYPE   26   54
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  FEMALE               1                26
  MALE                 7                54
D7V4, continuous
[1] "Remove cluster labels:" "4P GAIN MUTATED"       
clus
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                1                22 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A3MG        TCGA-CF-A3MH 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A2HX        TCGA-DK-A3IV        TCGA-E5-A2PC        TCGA-G2-A2EJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6        TCGA-GD-A3OS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 

Clustering(8) Variable = 4q gain mutation analysis
D8V1, survival
                   sevent
clus2                0  1
  4Q GAIN MUTATED    3  1
  4Q GAIN WILD-TYPE 55 25
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                4                80 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                1                25 
$`4Q GAIN MUTATED`
TCGA-C4-A0F6 TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-FD-A3NA 
        2.01         5.46         2.14        32.02 

$`4Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A1HS 
        3.65         4.64         8.98         1.94         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-DK-A1A3 TCGA-DK-A1A6 
        0.69        12.30         4.90         7.20         2.53        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE 
        8.98         7.04         8.91       118.88       100.47         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 
        5.85         6.64         1.81        10.59         7.76        75.32 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
        2.20         3.98         7.82        10.49        37.84         5.52 
TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
        9.67        36.43         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FT-A3EE TCGA-G2-A2EF 
        4.01        11.05         8.94         7.96         2.33        61.94 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
       26.50         5.65        26.93        32.78        17.26         7.04 
TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
       20.12         2.24         7.69         2.10         3.12         5.82 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI 
        4.37         5.26         6.15         5.69         7.79         4.11 
TCGA-H4-A2HO TCGA-H4-A2HQ 
        1.51         6.71 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             2.01              0.43 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            32.02            118.88 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             3.80              7.51 
[1] "2.0 - 32.0 (3.8)"  "0.4 - 118.9 (7.5)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      1    3
  4Q GAIN WILD-TYPE   26   58
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  FEMALE               1                26
  MALE                 3                58
D8V4, continuous

Clustering(9) Variable = 5p gain mutation analysis
D9V1, survival
                   sevent
clus2                0  1
  5P GAIN MUTATED   17  7
  5P GAIN WILD-TYPE 41 19
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               24                60 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                7                19 
$`5P GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BT-A20N TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LA 
       12.79         6.74        26.10         5.06         8.35         5.88 
TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YR TCGA-DK-A1A3 TCGA-DK-A2I6 TCGA-DK-A3IV 
        0.43        12.30         7.20         2.53        75.32         9.67 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3N5 TCGA-FT-A3EE TCGA-G2-A2EO 
        8.81         8.32         8.94         8.94         2.33        32.78 
TCGA-GC-A3I6 TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HQ 
        2.24         5.82         4.37         7.79         4.11         6.71 

$`5P GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O 
        7.33         2.66         6.58        11.93        19.00        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20X 
       17.85        19.46         5.06        14.89         8.61         8.25 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        3.65         4.64         8.98         1.94         2.01         0.46 
TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
        0.69         4.90         5.46         2.14        31.40         8.98 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        7.04         8.91       118.88       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IK TCGA-DK-A3IL 
        6.64         1.81        10.59         7.76         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-E5-A2PC TCGA-FD-A3B6 
        7.82        10.49        37.84         5.52        36.43         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-G2-A2EF TCGA-G2-A2EJ 
        4.01        11.05         7.96        32.02        61.94        26.50 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GD-A2C5 
        5.65        26.93        17.26         7.04        20.12         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-H4-A2HO 
        2.10         3.12         5.26         6.15         5.69         1.51 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.43              0.46 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
            75.32            118.88 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
            7.495             7.250 
[1] "0.4 - 75.3 (7.5)"  "0.5 - 118.9 (7.2)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
[1] "hr=" "1.1"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED      7   19
  5P GAIN WILD-TYPE   20   42
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  FEMALE               7                20
  MALE                19                42
D9V4, continuous

Clustering(10) Variable = 5q gain mutation analysis
D10V1, survival
                   sevent
clus2                0  1
  5Q GAIN MUTATED    9  3
  5Q GAIN WILD-TYPE 49 23
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               12                72 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                3                23 
$`5Q GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BT-A20N TCGA-CF-A1HS TCGA-DK-A2I6 TCGA-FD-A3B5 
       12.79         6.74        26.10         0.43        75.32         8.94 
TCGA-FT-A3EE TCGA-G2-A2EO TCGA-GC-A3I6 TCGA-GV-A3JV TCGA-GV-A3QH TCGA-GV-A3QI 
        2.33        32.78         2.24         4.37         7.79         4.11 

$`5Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O 
        7.33         2.66         6.58        11.93        19.00        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V 
       17.85        19.46         5.06        14.89         8.61         5.06 
TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ 
        8.35         8.25         5.88         3.65         4.64         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        1.94         2.01         0.46         0.69        12.30         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
        7.20         5.46         2.53         2.14        31.40         8.98 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        7.04         8.91       118.88       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IK TCGA-DK-A3IL 
        6.64         1.81        10.59         7.76         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC 
        7.82        10.49        37.84         5.52         9.67        36.43 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.81         8.32         6.87         4.01        11.05         8.94 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        7.96        32.02        61.94        26.50         5.65        26.93 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
       17.26         7.04        20.12         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-H4-A2HO TCGA-H4-A2HQ 
        5.82         5.26         6.15         5.69         1.51         6.71 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             0.43              0.46 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            75.32            118.88 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            7.265             7.265 
[1] "0.4 - 75.3 (7.3)"  "0.5 - 118.9 (7.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      2   11
  5Q GAIN WILD-TYPE   25   50
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  FEMALE               2                25
  MALE                11                50
D10V4, continuous

Clustering(11) Variable = 6p gain mutation analysis
D11V1, survival
                   sevent
clus2                0  1
  6P GAIN MUTATED    5  0
  6P GAIN WILD-TYPE 53 26
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                5                79 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                0                26 
$`6P GAIN MUTATED`
TCGA-DK-A1AC TCGA-DK-A2I6 TCGA-FT-A3EE TCGA-GC-A3I6 TCGA-GD-A2C5 
      118.88        75.32         2.33         2.24         7.69 

$`6P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        3.65         4.64         8.98         1.94         2.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.43         0.69        12.30         4.90         7.20         5.46 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        2.53         2.14        31.40         8.98         7.04         8.91 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 
      100.47         7.17         5.85         6.64         1.81        10.59 
TCGA-DK-A2I2 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS 
        7.76         2.20         3.98         7.82        10.49        37.84 
TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
        5.52         9.67        36.43         8.81         8.32         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        6.87         4.01        11.05         8.94         7.96        32.02 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
       61.94        26.50         5.65        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV 
        7.04        20.12         2.10         3.12         5.82         4.37 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO 
        5.26         6.15         5.69         7.79         4.11         1.51 
TCGA-H4-A2HQ 
        6.71 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             2.24              0.43 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           118.88            100.47 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             7.69              7.20 
[1] "2.2 - 118.9 (7.7)" "0.4 - 100.5 (7.2)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
[1] "hr="     "7.9e+07"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      2    3
  6P GAIN WILD-TYPE   25   58
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  FEMALE               2                25
  MALE                 3                58
D11V4, continuous
[1] "Remove cluster labels:" "6P GAIN MUTATED"       
clus
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                1                22 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A3MG        TCGA-CF-A3MH 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A2HX        TCGA-DK-A3IV        TCGA-E5-A2PC        TCGA-G2-A2EF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GD-A3OS 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 

Clustering(12) Variable = 6q gain mutation analysis
D12V1, survival
                   sevent
clus2                0  1
  6Q GAIN MUTATED    3  0
  6Q GAIN WILD-TYPE 55 26
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                3                81 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                0                26 
$`6Q GAIN MUTATED`
TCGA-BT-A2LA TCGA-DK-A1AC TCGA-DK-A2I6 
        5.88       118.88        75.32 

$`6Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD 
       14.89         8.61         5.06         8.35         8.25         3.65 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        4.64         8.98         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 
        0.69        12.30         4.90         7.20         5.46         2.53 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD 
        2.14        31.40         8.98         7.04         8.91       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
        7.17         5.85         6.64         1.81        10.59         7.76 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
        2.20         3.98         7.82        10.49        37.84         5.52 
TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
        9.67        36.43         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE 
        4.01        11.05         8.94         7.96        32.02         2.33 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
       61.94        26.50         5.65        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        7.04        20.12         2.24         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH 
        5.82         4.37         5.26         6.15         5.69         7.79 
TCGA-GV-A3QI TCGA-H4-A2HO TCGA-H4-A2HQ 
        4.11         1.51         6.71 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             5.88              0.43 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
           118.88            100.47 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            75.32              7.20 
[1] "5.9 - 118.9 (75.3)" "0.4 - 100.5 (7.2)" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
[1] "hr="     "7.9e+07"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      0    3
  6Q GAIN WILD-TYPE   27   58
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  FEMALE               0                27
  MALE                 3                58
D12V4, continuous

Clustering(13) Variable = 7p gain mutation analysis
D13V1, survival
                   sevent
clus2                0  1
  7P GAIN MUTATED   18  8
  7P GAIN WILD-TYPE 40 18
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               26                58 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
                8                18 
$`7P GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A20N TCGA-BT-A2LA TCGA-BT-A2LD 
       12.79         2.66         6.58        26.10         5.88         3.65 
TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-DK-A1A3 
        2.01         0.43        12.30         4.90         5.46         2.53 
TCGA-DK-A1AC TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-FD-A3B5 
      118.88        10.59         7.76         2.20         3.98         8.94 
TCGA-FD-A3B7 TCGA-FD-A3N5 TCGA-FT-A3EE TCGA-G2-A2EO TCGA-GC-A3I6 TCGA-GD-A2C5 
        4.01         8.94         2.33        32.78         2.24         7.69 
TCGA-GD-A3OS TCGA-GV-A3JZ 
        5.82         5.69 

$`7P GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P 
        7.33         6.74        11.93        19.00        12.16        17.85 
TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W 
       19.46         5.06        14.89         8.61         5.06         8.35 
TCGA-BT-A20X TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A27C 
        8.25         4.64         8.98         1.94         0.46         0.69 
TCGA-CU-A0YR TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        7.20         2.14        31.40         8.98         7.04         8.91 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I6 
      100.47         7.17         5.85         6.64         1.81        75.32 
TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC 
        7.82        10.49        37.84         5.52         9.67        36.43 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA 
        8.81         8.32         6.87        11.05         7.96        32.02 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2ES TCGA-G2-A3IB 
       61.94        26.50         5.65        26.93        17.26         7.04 
TCGA-G2-A3IE TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX 
       20.12         2.10         3.12         4.37         5.26         6.15 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO TCGA-H4-A2HQ 
        7.79         4.11         1.51         6.71 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.43              0.46 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           118.88            100.47 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
            5.755             7.890 
[1] "0.4 - 118.9 (5.8)" "0.5 - 100.5 (7.9)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED      9   20
  7P GAIN WILD-TYPE   18   41
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  FEMALE               9                18
  MALE                20                41
D13V4, continuous

Clustering(14) Variable = 7q gain mutation analysis
D14V1, survival
                   sevent
clus2                0  1
  7Q GAIN MUTATED   18  7
  7Q GAIN WILD-TYPE 40 19
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               25                59 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
                7                19 
$`7Q GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A20N TCGA-BT-A2LA TCGA-BT-A2LD 
       12.79         2.66         6.58        26.10         5.88         3.65 
TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-DK-A1AD 
        2.01         0.43        12.30         4.90         5.46       100.47 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IL TCGA-FD-A3B4 TCGA-FD-A3B7 
        1.81        10.59         7.76         3.98         8.32         4.01 
TCGA-FD-A3N5 TCGA-FT-A3EE TCGA-G2-A2EO TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OS 
        8.94         2.33        32.78         2.24         7.69         5.82 
TCGA-GV-A3JZ 
        5.69 

$`7Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P 
        7.33         6.74        11.93        19.00        12.16        17.85 
TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W 
       19.46         5.06        14.89         8.61         5.06         8.35 
TCGA-BT-A20X TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A27C 
        8.25         4.64         8.98         1.94         0.46         0.69 
TCGA-CU-A0YR TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        7.20         2.53         2.14        31.40         8.98         7.04 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I6 
        8.91       118.88         7.17         5.85         6.64        75.32 
TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV 
        2.20         7.82        10.49        37.84         5.52         9.67 
TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B8 TCGA-FD-A3N6 
       36.43         8.81         8.94         6.87        11.05         7.96 
TCGA-FD-A3NA TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2ES 
       32.02        61.94        26.50         5.65        26.93        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GV-A3JV TCGA-GV-A3JW 
        7.04        20.12         2.10         3.12         4.37         5.26 
TCGA-GV-A3JX TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO TCGA-H4-A2HQ 
        6.15         7.79         4.11         1.51         6.71 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.43              0.46 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           100.47            118.88 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             5.82              7.82 
[1] "0.4 - 100.5 (5.8)" "0.5 - 118.9 (7.8)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     11   17
  7Q GAIN WILD-TYPE   16   44
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  FEMALE              11                16
  MALE                17                44
D14V4, continuous

Clustering(15) Variable = 8p gain mutation analysis
D15V1, survival
                   sevent
clus2                0  1
  8P GAIN MUTATED    9  3
  8P GAIN WILD-TYPE 49 23
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               12                72 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
                3                23 
$`8P GAIN MUTATED`
TCGA-BL-A3JM TCGA-BT-A20N TCGA-BT-A20V TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-DK-A1A6 
        6.74        26.10         5.06         1.94         2.01        31.40 
TCGA-DK-A1AE TCGA-FD-A3N6 TCGA-G2-A2ES TCGA-GC-A3I6 TCGA-GV-A3JV TCGA-GV-A3QI 
        7.17         7.96        17.26         2.24         4.37         4.11 

$`8P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         2.66         6.58        11.93        19.00 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.85        19.46         5.06        14.89         8.61 
TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ 
        8.35         8.25         5.88         3.65         4.64         8.98 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR 
        0.46         0.43         0.69        12.30         4.90         7.20 
TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        5.46         2.53         2.14         8.98         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 
      118.88       100.47         5.85         6.64         1.81        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ 
        7.76        75.32         2.20         3.98         7.82        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 
       37.84         5.52         9.67        36.43         8.81         8.32 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3NA 
        8.94         6.87         4.01        11.05         8.94        32.02 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        2.33        61.94        26.50         5.65        26.93        32.78 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
        7.04        20.12         7.69         2.10         3.12         5.82 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-H4-A2HO TCGA-H4-A2HQ 
        5.26         6.15         5.69         7.79         1.51         6.71 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             1.94              0.43 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            31.40            118.88 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            5.900             7.725 
[1] "1.9 - 31.4 (5.9)"  "0.4 - 118.9 (7.7)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      3   11
  8P GAIN WILD-TYPE   24   50
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  FEMALE               3                24
  MALE                11                50
D15V4, continuous

Clustering(16) Variable = 8q gain mutation analysis
D16V1, survival
                   sevent
clus2                0  1
  8Q GAIN MUTATED   21  7
  8Q GAIN WILD-TYPE 37 19
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               28                56 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
                7                19 
$`8Q GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20V TCGA-BT-A20W 
       12.79         6.74        19.00        26.10         5.06         8.35 
TCGA-BT-A20X TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CU-A0YN TCGA-CU-A3KJ TCGA-DK-A1A6 
        8.25         1.94         2.01        12.30         5.46        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A2I1 TCGA-FD-A3B6 TCGA-FD-A3N6 
        8.98       100.47         7.17        10.59         6.87         7.96 
TCGA-FT-A3EE TCGA-G2-A2EK TCGA-G2-A2ES TCGA-GC-A3I6 TCGA-GD-A3OP TCGA-GD-A3OS 
        2.33         5.65        17.26         2.24         2.10         5.82 
TCGA-GV-A3JV TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI 
        4.37         5.69         7.79         4.11 

$`8Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20O TCGA-BT-A20P 
        7.33         2.66         6.58        11.93        12.16        17.85 
TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A2LA TCGA-BT-A2LD 
       19.46         5.06        14.89         8.61         5.88         3.65 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YO 
        4.64         8.98         0.46         0.43         0.69         4.90 
TCGA-CU-A0YR TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        7.20         2.53         2.14         7.04         8.91       118.88 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK 
        5.85         6.64         1.81         7.76        75.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV 
        3.98         7.82        10.49        37.84         5.52         9.67 
TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 
       36.43         8.81         8.32         8.94         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3NA TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EL TCGA-G2-A2EO 
        8.94        32.02        61.94        26.50        26.93        32.78 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GV-A3JW TCGA-GV-A3JX 
        7.04        20.12         7.69         3.12         5.26         6.15 
TCGA-H4-A2HO TCGA-H4-A2HQ 
        1.51         6.71 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             1.94              0.43 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           100.47            118.88 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             7.02              7.51 
[1] "1.9 - 100.5 (7.0)" "0.4 - 118.9 (7.5)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED      8   23
  8Q GAIN WILD-TYPE   19   38
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  FEMALE               8                19
  MALE                23                38
D16V4, continuous

Clustering(17) Variable = 9p gain mutation analysis
D17V1, survival
                   sevent
clus2                0  1
  9P GAIN MUTATED   11  1
  9P GAIN WILD-TYPE 47 25
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               12                72 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                1                25 
$`9P GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BT-A2LA TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A3IM 
       12.79         6.74         5.88       118.88       100.47         7.82 
TCGA-FD-A3N5 TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-GC-A3I6 TCGA-GV-A3JZ TCGA-GV-A3QI 
        8.94        61.94        26.50         2.24         5.69         4.11 

$`9P GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N 
        7.33         2.66         6.58        11.93        19.00        26.10 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.85        19.46         5.06        14.89         8.61 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ 
        5.06         8.35         8.25         3.65         4.64         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        1.94         2.01         0.46         0.43         0.69        12.30 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 
        4.90         7.20         5.46         2.53         2.14        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        8.98         7.04         8.91         7.17         5.85         6.64 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
        1.81        10.59         7.76        75.32         2.20         3.98 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 
       10.49        37.84         5.52         9.67        36.43         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 
        8.32         8.94         6.87         4.01        11.05         7.96 
TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
       32.02         2.33         5.65        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
        7.04        20.12         7.69         2.10         3.12         5.82 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QH TCGA-H4-A2HO TCGA-H4-A2HQ 
        4.37         5.26         6.15         7.79         1.51         6.71 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             2.24              0.43 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           118.88             75.32 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
            8.380             7.185 
[1] "2.2 - 118.9 (8.4)" "0.4 - 75.3 (7.2)" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
[1] "hr=" "6.6"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      1   11
  9P GAIN WILD-TYPE   26   50
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  FEMALE               1                26
  MALE                11                50
D17V4, continuous

Clustering(18) Variable = 9q gain mutation analysis
D18V1, survival
                   sevent
clus2                0  1
  9Q GAIN MUTATED   10  1
  9Q GAIN WILD-TYPE 48 25
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               11                73 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                1                25 
$`9Q GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BT-A2LA TCGA-C4-A0F0 TCGA-DK-A1AC TCGA-DK-A2I1 
       12.79         6.74         5.88         1.94       118.88        10.59 
TCGA-DK-A3IM TCGA-FD-A3B4 TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-GC-A3I6 
        7.82         8.32        61.94        26.50         2.24 

$`9Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N 
        7.33         2.66         6.58        11.93        19.00        26.10 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.85        19.46         5.06        14.89         8.61 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ 
        5.06         8.35         8.25         3.65         4.64         8.98 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        2.01         0.46         0.43         0.69        12.30         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
        7.20         5.46         2.53         2.14        31.40         8.98 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        7.04         8.91       100.47         7.17         5.85         6.64 
TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IQ 
        1.81         7.76        75.32         2.20         3.98        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B5 
       37.84         5.52         9.67        36.43         8.81         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        6.87         4.01        11.05         8.94         7.96        32.02 
TCGA-FT-A3EE TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
        2.33         5.65        26.93        32.78        17.26         7.04 
TCGA-G2-A3IE TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV 
       20.12         7.69         2.10         3.12         5.82         4.37 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO 
        5.26         6.15         5.69         7.79         4.11         1.51 
TCGA-H4-A2HQ 
        6.71 

  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             1.94              0.43 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           118.88            100.47 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             8.32              7.17 
[1] "1.9 - 118.9 (8.3)" "0.4 - 100.5 (7.2)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
[1] "hr=" "5.2"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      3    8
  9Q GAIN WILD-TYPE   24   53
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  FEMALE               3                24
  MALE                 8                53
D18V4, continuous

Clustering(19) Variable = 10p gain mutation analysis
D19V1, survival
                    sevent
clus2                 0  1
  10P GAIN MUTATED   12  5
  10P GAIN WILD-TYPE 46 21
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                17                 67 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 5                 21 
$`10P GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A20N TCGA-BT-A20R TCGA-BT-A20V TCGA-CF-A1HS 
       12.79         2.66        26.10         5.06         5.06         0.43 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AD TCGA-DK-A2I6 TCGA-DK-A3IL 
        2.53         2.14        31.40       100.47        75.32         3.98 
TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2ES TCGA-GV-A3JW TCGA-GV-A3JZ 
       32.02         2.33        17.26         5.26         5.69 

$`10P GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O 
        7.33         6.74         6.58        11.93        19.00        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X 
       17.85        19.46        14.89         8.61         8.35         8.25 
TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 
        5.88         3.65         4.64         8.98         1.94         2.01 
TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.46         0.69        12.30         4.90         7.20         5.46 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF 
        8.98         7.04         8.91       118.88         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IK TCGA-DK-A3IM 
        6.64         1.81        10.59         7.76         2.20         7.82 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 
       10.49        37.84         5.52         9.67        36.43         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.32         8.94         6.87         4.01        11.05         8.94 
TCGA-FD-A3N6 TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        7.96        61.94        26.50         5.65        26.93        32.78 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        7.04        20.12         2.24         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO 
        5.82         4.37         6.15         7.79         4.11         1.51 
TCGA-H4-A2HQ 
        6.71 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              0.43               0.46 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
            100.47             118.88 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              5.26               7.69 
[1] "0.4 - 100.5 (5.3)" "0.5 - 118.9 (7.7)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      5   14
  10P GAIN WILD-TYPE   22   47
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  FEMALE                5                 22
  MALE                 14                 47
D19V4, continuous

Clustering(20) Variable = 10q gain mutation analysis
D20V1, survival
                    sevent
clus2                 0  1
  10Q GAIN MUTATED    2  2
  10Q GAIN WILD-TYPE 56 24
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 4                 80 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 2                 24 
$`10Q GAIN MUTATED`
TCGA-BT-A20R TCGA-BT-A20V TCGA-DK-A1A3 TCGA-DK-A1A6 
        5.06         5.06         2.53        31.40 

$`10Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T 
       19.00        26.10        12.16        17.85        19.46        14.89 
TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH 
        8.61         8.35         8.25         5.88         3.65         4.64 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
        8.98         1.94         2.01         0.46         0.43         0.69 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-DK-A1A7 
       12.30         4.90         7.20         5.46         2.14         8.98 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        7.04         8.91       118.88       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK 
        6.64         1.81        10.59         7.76        75.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV 
        3.98         7.82        10.49        37.84         5.52         9.67 
TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
       36.43         8.81         8.32         8.94         6.87         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EF 
       11.05         8.94         7.96        32.02         2.33        61.94 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
       26.50         5.65        26.93        32.78        17.26         7.04 
TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
       20.12         2.24         7.69         2.10         3.12         5.82 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI 
        4.37         5.26         6.15         5.69         7.79         4.11 
TCGA-H4-A2HO TCGA-H4-A2HQ 
        1.51         6.71 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              2.53               0.43 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             31.40             118.88 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              5.06               7.51 
[1] "2.5 - 31.4 (5.1)"  "0.4 - 118.9 (7.5)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      2    3
  10Q GAIN WILD-TYPE   25   58
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  FEMALE                2                 25
  MALE                  3                 58
D20V4, continuous

Clustering(21) Variable = 11p gain mutation analysis
D21V1, survival
                    sevent
clus2                 0  1
  11P GAIN MUTATED    3  1
  11P GAIN WILD-TYPE 55 25
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 4                 80 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 1                 25 
$`11P GAIN MUTATED`
TCGA-DK-A3IV TCGA-FD-A3B6 TCGA-GV-A3JZ TCGA-GV-A3QI 
        9.67         6.87         5.69         4.11 

$`11P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        3.65         4.64         8.98         1.94         2.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.43         0.69        12.30         4.90         7.20         5.46 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        2.53         2.14        31.40         8.98         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
      118.88       100.47         7.17         5.85         6.64         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
       10.59         7.76        75.32         2.20         3.98         7.82 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 
       10.49        37.84         5.52        36.43         8.81         8.32 
TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        8.94         4.01        11.05         8.94         7.96        32.02 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        2.33        61.94        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP 
       17.26         7.04        20.12         2.24         7.69         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QH 
        3.12         5.82         4.37         5.26         6.15         7.79 
TCGA-H4-A2HO TCGA-H4-A2HQ 
        1.51         6.71 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              4.11               0.43 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              9.67             118.88 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              6.28               7.51 
[1] "4.1 - 9.7 (6.3)"   "0.4 - 118.9 (7.5)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      0    4
  11P GAIN WILD-TYPE   27   57
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  FEMALE                0                 27
  MALE                  4                 57
D21V4, continuous

Clustering(22) Variable = 11q gain mutation analysis
D22V1, survival
                    sevent
clus2                 0  1
  11Q GAIN MUTATED    3  0
  11Q GAIN WILD-TYPE 55 26
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 3                 81 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 0                 26 
$`11Q GAIN MUTATED`
TCGA-DK-A1A3 TCGA-FD-A3B6 TCGA-GC-A3I6 
        2.53         6.87         2.24 

$`11Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        3.65         4.64         8.98         1.94         2.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.43         0.69        12.30         4.90         7.20         5.46 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        2.14        31.40         8.98         7.04         8.91       118.88 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 
      100.47         7.17         5.85         6.64         1.81        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ 
        7.76        75.32         2.20         3.98         7.82        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 
       37.84         5.52         9.67        36.43         8.81         8.32 
TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        8.94         4.01        11.05         8.94         7.96        32.02 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        2.33        61.94        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
       17.26         7.04        20.12         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH 
        5.82         4.37         5.26         6.15         5.69         7.79 
TCGA-GV-A3QI TCGA-H4-A2HO TCGA-H4-A2HQ 
        4.11         1.51         6.71 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              2.24               0.43 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              6.87             118.88 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              2.53               7.69 
[1] "2.2 - 6.9 (2.5)"   "0.4 - 118.9 (7.7)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
[1] "hr="     "9200000"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      0    3
  11Q GAIN WILD-TYPE   27   58
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  FEMALE                0                 27
  MALE                  3                 58
D22V4, continuous
[1] "Remove cluster labels:" "11Q GAIN MUTATED"      
clus
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 1                 22 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CF-A3MG 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CF-A3MH         TCGA-DK-A2HX         TCGA-DK-A3IV 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI 
"11Q GAIN WILD-TYPE" 

Clustering(23) Variable = 12p gain mutation analysis
D23V1, survival
                    sevent
clus2                 0  1
  12P GAIN MUTATED   10  6
  12P GAIN WILD-TYPE 48 20
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                16                 68 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 6                 20 
$`12P GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20P TCGA-BT-A20V 
       12.79         6.74        19.00        26.10        17.85         5.06 
TCGA-BT-A2LD TCGA-CU-A0YN TCGA-CU-A0YR TCGA-DK-A1A6 TCGA-DK-A3IM TCGA-FD-A3B6 
        3.65        12.30         7.20        31.40         7.82         6.87 
TCGA-FD-A3NA TCGA-GC-A3I6 TCGA-GV-A3JZ TCGA-GV-A3QI 
       32.02         2.24         5.69         4.11 

$`12P GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20O TCGA-BT-A20Q 
        7.33         2.66         6.58        11.93        12.16        19.46 
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
        5.06        14.89         8.61         8.35         8.25         5.88 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        4.64         8.98         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A7 
        0.69         4.90         5.46         2.53         2.14         8.98 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        7.04         8.91       118.88       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK 
        6.64         1.81        10.59         7.76        75.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC 
        3.98        10.49        37.84         5.52         9.67        36.43 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.81         8.32         8.94         4.01        11.05         8.94 
TCGA-FD-A3N6 TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        7.96         2.33        61.94        26.50         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GD-A2C5 TCGA-GD-A3OP 
       32.78        17.26         7.04        20.12         7.69         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QH 
        3.12         5.82         4.37         5.26         6.15         7.79 
TCGA-H4-A2HO TCGA-H4-A2HQ 
        1.51         6.71 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              2.24               0.43 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             32.02             118.88 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              7.51               7.25 
[1] "2.2 - 32.0 (7.5)"  "0.4 - 118.9 (7.2)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D23V2, continuous
D23V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      3   15
  12P GAIN WILD-TYPE   24   46
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  FEMALE                3                 24
  MALE                 15                 46
D23V4, continuous

Clustering(24) Variable = 12q gain mutation analysis
D24V1, survival
                    sevent
clus2                 0  1
  12Q GAIN MUTATED    8  4
  12Q GAIN WILD-TYPE 50 22
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                12                 72 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 4                 22 
$`12Q GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BT-A20J TCGA-BT-A20P TCGA-CU-A0YR TCGA-DK-A1A5 
       12.79         6.74        19.00        17.85         7.20         2.14 
TCGA-DK-A1A6 TCGA-DK-A1AC TCGA-FD-A3B6 TCGA-FD-A3NA TCGA-G2-A2EF TCGA-GC-A3I6 
       31.40       118.88         6.87        32.02        61.94         2.24 

$`12Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20N TCGA-BT-A20O 
        7.33         2.66         6.58        11.93        26.10        12.16 
TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W 
       19.46         5.06        14.89         8.61         5.06         8.35 
TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 
        8.25         5.88         3.65         4.64         8.98         1.94 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        2.01         0.46         0.43         0.69        12.30         4.90 
TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD 
        5.46         2.53         8.98         7.04         8.91       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
        7.17         5.85         6.64         1.81        10.59         7.76 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS 
       75.32         2.20         3.98         7.82        10.49        37.84 
TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
        5.52         9.67        36.43         8.81         8.32         8.94 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FT-A3EE TCGA-G2-A2EJ 
        4.01        11.05         8.94         7.96         2.33        26.50 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
        5.65        26.93        32.78        17.26         7.04        20.12 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW 
        7.69         2.10         3.12         5.82         4.37         5.26 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO TCGA-H4-A2HQ 
        6.15         5.69         7.79         4.11         1.51         6.71 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              2.14               0.43 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
            118.88             100.47 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
            15.320              7.105 
[1] "2.1 - 118.9 (15.3)" "0.4 - 100.5 (7.1)" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      1   13
  12Q GAIN WILD-TYPE   26   48
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  FEMALE                1                 26
  MALE                 13                 48
D24V4, continuous

Clustering(25) Variable = 13q gain mutation analysis
D25V1, survival
                    sevent
clus2                 0  1
  13Q GAIN MUTATED    8  6
  13Q GAIN WILD-TYPE 50 20
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                14                 70 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 6                 20 
$`13Q GAIN MUTATED`
TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20Q TCGA-BT-A2LD TCGA-C4-A0EZ 
        6.74         6.58        19.00        19.46         3.65         8.98 
TCGA-CU-A0YN TCGA-DK-A2HX TCGA-DK-A3IL TCGA-G2-A2EF TCGA-G2-A2EK TCGA-GD-A3OS 
       12.30         1.81         3.98        61.94         5.65         5.82 
TCGA-GV-A3JX TCGA-GV-A3JZ 
        6.15         5.69 

$`13Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0YX TCGA-BT-A20N TCGA-BT-A20O 
       12.79         7.33         2.66        11.93        26.10        12.16 
TCGA-BT-A20P TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W 
       17.85         5.06        14.89         8.61         5.06         8.35 
TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A3PH TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        8.25         5.88         4.64         1.94         2.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 
        0.43         0.69         4.90         7.20         5.46         2.53 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        2.14        31.40         8.98         7.04         8.91       118.88 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I2 
      100.47         7.17         5.85         6.64        10.59         7.76 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
       75.32         2.20         7.82        10.49        37.84         5.52 
TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
        9.67        36.43         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE 
        4.01        11.05         8.94         7.96        32.02         2.33 
TCGA-G2-A2EJ TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
       26.50        26.93        32.78        17.26         7.04        20.12 
TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GV-A3JV TCGA-GV-A3JW 
        2.24         7.69         2.10         3.12         4.37         5.26 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO TCGA-H4-A2HQ 
        7.79         4.11         1.51         6.71 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              1.81               0.43 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             61.94             118.88 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             6.365              7.725 
[1] "1.8 - 61.9 (6.4)"  "0.4 - 118.9 (7.7)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      5   11
  13Q GAIN WILD-TYPE   22   50
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  FEMALE                5                 22
  MALE                 11                 50
D25V4, continuous

Clustering(26) Variable = 14q gain mutation analysis
D26V1, survival
                    sevent
clus2                 0  1
  14Q GAIN MUTATED    6  2
  14Q GAIN WILD-TYPE 52 24
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 8                 76 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 2                 24 
$`14Q GAIN MUTATED`
TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-DK-A3IT TCGA-FD-A3N5 TCGA-G2-A2EL TCGA-G2-A2EO 
        8.98         2.01         5.52         8.94        26.93        32.78 
TCGA-GC-A3I6 TCGA-GD-A3OS 
        2.24         5.82 

$`14Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
        3.65         4.64         1.94         0.46         0.43         0.69 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 
       12.30         4.90         7.20         5.46         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD 
       31.40         8.98         7.04         8.91       118.88       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
        7.17         5.85         6.64         1.81        10.59         7.76 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS 
       75.32         2.20         3.98         7.82        10.49        37.84 
TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
        9.67        36.43         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EF 
        4.01        11.05         7.96        32.02         2.33        61.94 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GD-A2C5 
       26.50         5.65        17.26         7.04        20.12         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ 
        2.10         3.12         4.37         5.26         6.15         5.69 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO TCGA-H4-A2HQ 
        7.79         4.11         1.51         6.71 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              2.01               0.43 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             32.78             118.88 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             7.380              7.265 
[1] "2.0 - 32.8 (7.4)"  "0.4 - 118.9 (7.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      3    5
  14Q GAIN WILD-TYPE   24   56
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  FEMALE                3                 24
  MALE                  5                 56
D26V4, continuous

Clustering(27) Variable = 15q gain mutation analysis
D27V1, survival
                    sevent
clus2                 0  1
  15Q GAIN MUTATED    2  2
  15Q GAIN WILD-TYPE 56 24
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 4                 80 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 2                 24 
$`15Q GAIN MUTATED`
TCGA-BT-A20Q TCGA-DK-A1A5 TCGA-DK-A2HX TCGA-GC-A3I6 
       19.46         2.14         1.81         2.24 

$`15Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20R TCGA-BT-A20T 
       19.00        26.10        12.16        17.85         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD 
        8.61         5.06         8.35         8.25         5.88         3.65 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        4.64         8.98         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 
        0.69        12.30         4.90         7.20         5.46         2.53 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD 
       31.40         8.98         7.04         8.91       118.88       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 
        7.17         5.85         6.64        10.59         7.76        75.32 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
        2.20         3.98         7.82        10.49        37.84         5.52 
TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
        9.67        36.43         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE 
        4.01        11.05         8.94         7.96        32.02         2.33 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
       61.94        26.50         5.65        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
        7.04        20.12         7.69         2.10         3.12         5.82 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI 
        4.37         5.26         6.15         5.69         7.79         4.11 
TCGA-H4-A2HO TCGA-H4-A2HQ 
        1.51         6.71 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              1.81               0.43 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             19.46             118.88 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              2.19               7.51 
[1] "1.8 - 19.5 (2.2)"  "0.4 - 118.9 (7.5)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
[1] "hr=" "2.8"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      1    3
  15Q GAIN WILD-TYPE   26   58
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  FEMALE                1                 26
  MALE                  3                 58
D27V4, continuous
[1] "Remove cluster labels:" "15Q GAIN MUTATED"      
clus
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 2                 21 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CF-A3MG 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CF-A3MH         TCGA-DK-A3IV         TCGA-E5-A2PC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GD-A3OS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3JV         TCGA-GV-A3JW         TCGA-GV-A3JX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3JZ         TCGA-GV-A3QH         TCGA-GV-A3QI 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 

Clustering(28) Variable = 16p gain mutation analysis
D28V1, survival
                    sevent
clus2                 0  1
  16P GAIN MUTATED    4  4
  16P GAIN WILD-TYPE 54 22
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 8                 76 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 4                 22 
$`16P GAIN MUTATED`
TCGA-BL-A13J TCGA-BT-A20V TCGA-BT-A2LA TCGA-C4-A0EZ TCGA-DK-A3IL TCGA-DK-A3IV 
        2.66         5.06         5.88         8.98         3.98         9.67 
TCGA-FT-A3EE TCGA-GC-A3I6 
        2.33         2.24 

$`16P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         6.74         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0F0 
        8.61         8.35         8.25         3.65         4.64         1.94 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        2.01         0.46         0.43         0.69        12.30         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
        7.20         5.46         2.53         2.14        31.40         8.98 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        7.04         8.91       118.88       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK 
        6.64         1.81        10.59         7.76        75.32         2.20 
TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-E5-A2PC TCGA-FD-A3B3 
        7.82        10.49        37.84         5.52        36.43         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.32         8.94         6.87         4.01        11.05         8.94 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        7.96        32.02        61.94        26.50         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GD-A2C5 TCGA-GD-A3OP 
       32.78        17.26         7.04        20.12         7.69         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ 
        3.12         5.82         4.37         5.26         6.15         5.69 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO TCGA-H4-A2HQ 
        7.79         4.11         1.51         6.71 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              2.24               0.43 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              9.67             118.88 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             4.520              7.725 
[1] "2.2 - 9.7 (4.5)"   "0.4 - 118.9 (7.7)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
[1] "hr=" "4.8"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      4    4
  16P GAIN WILD-TYPE   23   57
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  FEMALE                4                 23
  MALE                  4                 57
D28V4, continuous
[1] "Remove cluster labels:" "16P GAIN MUTATED"      
clus
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 2                 21 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CF-A3MG 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CF-A3MH         TCGA-DK-A2HX         TCGA-E5-A2PC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GD-A3OS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A3JV         TCGA-GV-A3JW         TCGA-GV-A3JX 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A3JZ         TCGA-GV-A3QH         TCGA-GV-A3QI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 

Clustering(29) Variable = 16q gain mutation analysis
D29V1, survival
                    sevent
clus2                 0  1
  16Q GAIN MUTATED    7  3
  16Q GAIN WILD-TYPE 51 23
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                10                 74 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 3                 23 
$`16Q GAIN MUTATED`
TCGA-BL-A13J TCGA-BT-A20V TCGA-BT-A2LA TCGA-C4-A0EZ TCGA-CU-A3KJ TCGA-DK-A3IL 
        2.66         5.06         5.88         8.98         5.46         3.98 
TCGA-FT-A3EE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OS 
        2.33         2.24         7.69         5.82 

$`16Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         6.74         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0F0 
        8.61         8.35         8.25         3.65         4.64         1.94 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        2.01         0.46         0.43         0.69        12.30         4.90 
TCGA-CU-A0YR TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        7.20         2.53         2.14        31.40         8.98         7.04 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        8.91       118.88       100.47         7.17         5.85         6.64 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM 
        1.81        10.59         7.76        75.32         2.20         7.82 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 
       10.49        37.84         5.52         9.67        36.43         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.32         8.94         6.87         4.01        11.05         8.94 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        7.96        32.02        61.94        26.50         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GD-A3OP TCGA-GD-A3OQ 
       32.78        17.26         7.04        20.12         2.10         3.12 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI 
        4.37         5.26         6.15         5.69         7.79         4.11 
TCGA-H4-A2HO TCGA-H4-A2HQ 
        1.51         6.71 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              2.24               0.43 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              8.98             118.88 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             5.260              7.805 
[1] "2.2 - 9.0 (5.3)"   "0.4 - 118.9 (7.8)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
[1] "hr=" "3.5"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      6    4
  16Q GAIN WILD-TYPE   21   57
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  FEMALE                6                 21
  MALE                  4                 57
D29V4, continuous
[1] "Remove cluster labels:" "16Q GAIN MUTATED"      
clus
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 2                 21 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CF-A3MG 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CF-A3MH         TCGA-DK-A2HX         TCGA-DK-A3IV 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A3JV         TCGA-GV-A3JW         TCGA-GV-A3JX 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A3JZ         TCGA-GV-A3QH         TCGA-GV-A3QI 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 

Clustering(30) Variable = 17p gain mutation analysis
D30V1, survival
                    sevent
clus2                 0  1
  17P GAIN MUTATED    4  2
  17P GAIN WILD-TYPE 54 24
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 6                 78 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 2                 24 
$`17P GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-DK-A3IM TCGA-FT-A3EE 
       12.79         6.74         3.65         8.98         7.82         2.33 

$`17P GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N 
        7.33         2.66         6.58        11.93        19.00        26.10 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.85        19.46         5.06        14.89         8.61 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A3PH TCGA-C4-A0F0 
        5.06         8.35         8.25         5.88         4.64         1.94 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        2.01         0.46         0.43         0.69        12.30         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
        7.20         5.46         2.53         2.14        31.40         8.98 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        7.04         8.91       118.88       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK 
        6.64         1.81        10.59         7.76        75.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC 
        3.98        10.49        37.84         5.52         9.67        36.43 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        8.81         8.32         8.94         6.87         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK 
        8.94         7.96        32.02        61.94        26.50         5.65 
TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 
       26.93        32.78        17.26         7.04        20.12         2.24 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW 
        7.69         2.10         3.12         5.82         4.37         5.26 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO TCGA-H4-A2HQ 
        6.15         5.69         7.79         4.11         1.51         6.71 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              2.33               0.43 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             12.79             118.88 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             7.280              7.265 
[1] "2.3 - 12.8 (7.3)"  "0.4 - 118.9 (7.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      3    3
  17P GAIN WILD-TYPE   24   58
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  FEMALE                3                 24
  MALE                  3                 58
D30V4, continuous

Clustering(31) Variable = 17q gain mutation analysis
D31V1, survival
                    sevent
clus2                 0  1
  17Q GAIN MUTATED    9  4
  17Q GAIN WILD-TYPE 49 22
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                13                 71 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 4                 22 
$`17Q GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A20Q TCGA-BT-A2LD TCGA-C4-A0EZ 
       12.79         2.66         6.74        19.46         3.65         8.98 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AD TCGA-DK-A3IM TCGA-FT-A3EE TCGA-GV-A3JZ 
       31.40         8.98       100.47         7.82         2.33         5.69 
TCGA-H4-A2HQ 
        6.71 

$`17Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O 
        7.33         6.58        11.93        19.00        26.10        12.16 
TCGA-BT-A20P TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W 
       17.85         5.06        14.89         8.61         5.06         8.35 
TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A3PH TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        8.25         5.88         4.64         1.94         2.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.43         0.69        12.30         4.90         7.20         5.46 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE 
        2.53         2.14         7.04         8.91       118.88         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 
        5.85         6.64         1.81        10.59         7.76        75.32 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV 
        2.20         3.98        10.49        37.84         5.52         9.67 
TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
       36.43         8.81         8.32         8.94         6.87         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-G2-A2EF TCGA-G2-A2EJ 
       11.05         8.94         7.96        32.02        61.94        26.50 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
        5.65        26.93        32.78        17.26         7.04        20.12 
TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV 
        2.24         7.69         2.10         3.12         5.82         4.37 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO 
        5.26         6.15         7.79         4.11         1.51 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              2.33               0.43 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
            100.47             118.88 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              7.82               7.20 
[1] "2.3 - 100.5 (7.8)" "0.4 - 118.9 (7.2)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
[1] "hr=" "1.2"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      5    9
  17Q GAIN WILD-TYPE   22   52
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  FEMALE                5                 22
  MALE                  9                 52
D31V4, continuous
[1] "Remove cluster labels:" "17Q GAIN MUTATED"      
clus
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 1                 22 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CF-A3MG 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CF-A3MH         TCGA-DK-A2HX         TCGA-DK-A3IV 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GC-A3I6         TCGA-GD-A3OS         TCGA-GV-A3JV 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GV-A3JW         TCGA-GV-A3JX         TCGA-GV-A3QH 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI 
"17Q GAIN WILD-TYPE" 

Clustering(32) Variable = 18p gain mutation analysis
D32V1, survival
                    sevent
clus2                 0  1
  18P GAIN MUTATED   10  5
  18P GAIN WILD-TYPE 48 21
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                15                 69 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 5                 21 
$`18P GAIN MUTATED`
TCGA-BL-A3JM TCGA-BT-A20V TCGA-BT-A20W TCGA-C4-A0EZ TCGA-CF-A1HS TCGA-DK-A2I6 
        6.74         5.06         8.35         8.98         0.43        75.32 
TCGA-DK-A3IM TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3N5 TCGA-G2-A2EF TCGA-GD-A2C5 
        7.82         8.94         6.87         8.94        61.94         7.69 
TCGA-GD-A3OP TCGA-GV-A3JX TCGA-GV-A3QI 
        2.10         6.15         4.11 

$`18P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         2.66         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0F0 
        8.61         8.25         5.88         3.65         4.64         1.94 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR 
        2.01         0.46         0.69        12.30         4.90         7.20 
TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        5.46         2.53         2.14        31.40         8.98         7.04 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        8.91       118.88       100.47         7.17         5.85         6.64 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IQ 
        1.81        10.59         7.76         2.20         3.98        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 
       37.84         5.52         9.67        36.43         8.81         8.32 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EJ 
        4.01        11.05         7.96        32.02         2.33        26.50 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
        5.65        26.93        32.78        17.26         7.04        20.12 
TCGA-GC-A3I6 TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JZ 
        2.24         3.12         5.82         4.37         5.26         5.69 
TCGA-GV-A3QH TCGA-H4-A2HO TCGA-H4-A2HQ 
        7.79         1.51         6.71 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              0.43               0.46 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             75.32             118.88 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              7.69               7.20 
[1] "0.4 - 75.3 (7.7)"  "0.5 - 118.9 (7.2)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      5   10
  18P GAIN WILD-TYPE   22   51
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  FEMALE                5                 22
  MALE                 10                 51
D32V4, continuous

Clustering(33) Variable = 18q gain mutation analysis
D33V1, survival
                    sevent
clus2                 0  1
  18Q GAIN MUTATED    3  3
  18Q GAIN WILD-TYPE 55 23
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 6                 78 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 3                 23 
$`18Q GAIN MUTATED`
TCGA-BL-A3JM TCGA-BT-A20V TCGA-C4-A0EZ TCGA-DK-A1AE TCGA-FD-A3B6 TCGA-GV-A3QI 
        6.74         5.06         8.98         7.17         6.87         4.11 

$`18Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         2.66         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH 
        8.61         8.35         8.25         5.88         3.65         4.64 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        1.94         2.01         0.46         0.43         0.69        12.30 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 
        4.90         7.20         5.46         2.53         2.14        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AF 
        8.98         7.04         8.91       118.88       100.47         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK 
        6.64         1.81        10.59         7.76        75.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV 
        3.98         7.82        10.49        37.84         5.52         9.67 
TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 
       36.43         8.81         8.32         8.94         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ 
        8.94         7.96        32.02         2.33        61.94        26.50 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
        5.65        26.93        32.78        17.26         7.04        20.12 
TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV 
        2.24         7.69         2.10         3.12         5.82         4.37 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-H4-A2HO TCGA-H4-A2HQ 
        5.26         6.15         5.69         7.79         1.51         6.71 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              4.11               0.43 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              8.98             118.88 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             6.805              7.725 
[1] "4.1 - 9.0 (6.8)"   "0.4 - 118.9 (7.7)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
[1] "hr=" "3.8"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      2    4
  18Q GAIN WILD-TYPE   25   57
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  FEMALE                2                 25
  MALE                  4                 57
D33V4, continuous
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 1                 22 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CF-A3MG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CF-A3MH         TCGA-DK-A2HX         TCGA-DK-A3IV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-G2-A3IE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GC-A3I6         TCGA-GD-A3OS         TCGA-GV-A3JV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A3JW         TCGA-GV-A3JX         TCGA-GV-A3JZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH 
"18Q GAIN WILD-TYPE" 

Clustering(34) Variable = 19p gain mutation analysis
D34V1, survival
                    sevent
clus2                 0  1
  19P GAIN MUTATED    8  1
  19P GAIN WILD-TYPE 50 25
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 9                 75 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 1                 25 
$`19P GAIN MUTATED`
TCGA-BL-A3JM TCGA-BT-A2LA TCGA-CU-A3KJ TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A2HX 
        6.74         5.88         5.46        31.40         8.98         1.81 
TCGA-FT-A3EE TCGA-GV-A3JV TCGA-GV-A3JW 
        2.33         4.37         5.26 

$`19P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         2.66         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PH 
        8.61         5.06         8.35         8.25         3.65         4.64 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
        8.98         1.94         2.01         0.46         0.43         0.69 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1AA 
       12.30         4.90         7.20         2.53         2.14         7.04 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        8.91       118.88       100.47         7.17         5.85         6.64 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
       10.59         7.76        75.32         2.20         3.98         7.82 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 
       10.49        37.84         5.52         9.67        36.43         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.32         8.94         6.87         4.01        11.05         8.94 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        7.96        32.02        61.94        26.50         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 
       32.78        17.26         7.04        20.12         2.24         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH 
        2.10         3.12         5.82         6.15         5.69         7.79 
TCGA-GV-A3QI TCGA-H4-A2HO TCGA-H4-A2HQ 
        4.11         1.51         6.71 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              1.81               0.43 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             31.40             118.88 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              5.46               7.76 
[1] "1.8 - 31.4 (5.5)"  "0.4 - 118.9 (7.8)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
[1] "hr=" "2"  
D34V2, continuous
D34V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      3    6
  19P GAIN WILD-TYPE   24   55
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  FEMALE                3                 24
  MALE                  6                 55
D34V4, continuous

Clustering(35) Variable = 19q gain mutation analysis
D35V1, survival
                    sevent
clus2                 0  1
  19Q GAIN MUTATED   15  3
  19Q GAIN WILD-TYPE 43 23
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                18                 66 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 3                 23 
$`19Q GAIN MUTATED`
TCGA-BL-A3JM TCGA-BT-A20J TCGA-BT-A20V TCGA-BT-A2LA TCGA-C4-A0F6 TCGA-CU-A3KJ 
        6.74        19.00         5.06         5.88         2.01         5.46 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AB TCGA-DK-A2HX TCGA-DK-A3IL TCGA-FT-A3EE 
       31.40         8.98         8.91         1.81         3.98         2.33 
TCGA-G2-A2EF TCGA-G2-A2EO TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-H4-A2HQ 
       61.94        32.78         4.37         5.26         5.69         6.71 

$`19Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20N 
       12.79         7.33         2.66         6.58        11.93        26.10 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.85        19.46         5.06        14.89         8.61 
TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 
        8.35         8.25         3.65         4.64         8.98         1.94 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR 
        0.46         0.43         0.69        12.30         4.90         7.20 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE 
        2.53         2.14         7.04       118.88       100.47         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK 
        5.85         6.64        10.59         7.76        75.32         2.20 
TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC 
        7.82        10.49        37.84         5.52         9.67        36.43 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        8.81         8.32         8.94         6.87         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        8.94         7.96        32.02        26.50         5.65        26.93 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP 
       17.26         7.04        20.12         2.24         7.69         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JX TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO 
        3.12         5.82         6.15         7.79         4.11         1.51 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              1.81               0.43 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             61.94             118.88 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             5.785              7.775 
[1] "1.8 - 61.9 (5.8)"  "0.4 - 118.9 (7.8)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
[1] "hr=" "1.9"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      8   10
  19Q GAIN WILD-TYPE   19   51
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  FEMALE                8                 19
  MALE                 10                 51
D35V4, continuous

Clustering(36) Variable = 20p gain mutation analysis
D36V1, survival
                    sevent
clus2                 0  1
  20P GAIN MUTATED   26  9
  20P GAIN WILD-TYPE 32 17
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                35                 49 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                 9                 17 
$`20P GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20R TCGA-BT-A20V 
       12.79         2.66         6.74         6.58         5.06         5.06 
TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CU-A0YR 
        3.65         8.98         1.94         2.01         0.43         7.20 
TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-DK-A1AC TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
        5.46         2.14       118.88         1.81        10.59         7.76 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3NA TCGA-FT-A3EE 
        2.20         3.98         6.87         4.01        32.02         2.33 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GV-A3JV 
       61.94        26.50         2.24         7.69         2.10         4.37 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HQ 
        5.26         6.15         7.79         4.11         6.71 

$`20P GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P 
        7.33        11.93        19.00        26.10        12.16        17.85 
TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       19.46        14.89         8.61         8.35         8.25         5.88 
TCGA-BT-A3PH TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-DK-A1A3 
        4.64         0.46         0.69        12.30         4.90         2.53 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE 
       31.40         8.98         7.04         8.91       100.47         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I6 TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS 
        5.85         6.64        75.32         7.82        10.49        37.84 
TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
        5.52         9.67        36.43         8.81         8.32         8.94 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
       11.05         8.94         7.96         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JZ 
       17.26         7.04        20.12         3.12         5.82         5.69 
TCGA-H4-A2HO 
        1.51 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              0.43               0.46 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            118.88             100.47 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              5.26               8.81 
[1] "0.4 - 118.9 (5.3)" "0.5 - 100.5 (8.8)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
[1] "hr=" "1.4"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     15   21
  20P GAIN WILD-TYPE   12   40
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  FEMALE               15                 12
  MALE                 21                 40
D36V4, continuous

Clustering(37) Variable = 20q gain mutation analysis
D37V1, survival
                    sevent
clus2                 0  1
  20Q GAIN MUTATED   26  9
  20Q GAIN WILD-TYPE 32 17
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                35                 49 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                 9                 17 
$`20Q GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20Q 
       12.79         2.66         6.74         6.58        19.00        19.46 
TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CU-A0YR TCGA-CU-A3KJ 
        3.65         8.98         1.94         2.01         7.20         5.46 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AC TCGA-DK-A2HX TCGA-DK-A2I1 
        2.14        31.40         8.98       118.88         1.81        10.59 
TCGA-DK-A2I2 TCGA-DK-A3IL TCGA-DK-A3IS TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3NA 
        7.76         3.98        37.84         6.87         4.01        32.02 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GV-A3JV 
        2.33        61.94        26.50         2.24         7.69         4.37 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HQ 
        5.26         6.15         7.79         4.11         6.71 

$`20Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BT-A0YX TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20R 
        7.33        11.93        26.10        12.16        17.85         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A3PH TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        4.64         0.46         0.43         0.69        12.30         4.90 
TCGA-DK-A1A3 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        2.53         7.04         8.91       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IT 
        6.64        75.32         2.20         7.82        10.49         5.52 
TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B8 
        9.67        36.43         8.81         8.32         8.94        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
        8.94         7.96         5.65        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JZ 
        7.04        20.12         2.10         3.12         5.82         5.69 
TCGA-H4-A2HO 
        1.51 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              1.81               0.43 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            118.88             100.47 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              6.74               7.96 
[1] "1.8 - 118.9 (6.7)" "0.4 - 100.5 (8.0)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
[1] "hr=" "1.3"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     12   25
  20Q GAIN WILD-TYPE   15   36
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  FEMALE               12                 15
  MALE                 25                 36
D37V4, continuous

Clustering(38) Variable = 21q gain mutation analysis
D38V1, survival
                    sevent
clus2                 0  1
  21Q GAIN MUTATED   14  2
  21Q GAIN WILD-TYPE 44 24
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                16                 68 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 2                 24 
$`21Q GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A2LA TCGA-C4-A0F0 TCGA-CF-A1HS TCGA-DK-A1A3 
       12.79         2.66         5.88         1.94         0.43         2.53 
TCGA-DK-A1A7 TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IL TCGA-DK-A3IV TCGA-FD-A3NA 
        8.98        10.59        75.32         3.98         9.67        32.02 
TCGA-G2-A2EK TCGA-GD-A2C5 TCGA-GV-A3JX TCGA-H4-A2HQ 
        5.65         7.69         6.15         6.71 

$`21Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N 
        7.33         6.74         6.58        11.93        19.00        26.10 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.85        19.46         5.06        14.89         8.61 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ 
        5.06         8.35         8.25         3.65         4.64         8.98 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR 
        2.01         0.46         0.69        12.30         4.90         7.20 
TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        5.46         2.14        31.40         7.04         8.91       118.88 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 
      100.47         7.17         5.85         6.64         1.81         7.76 
TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-E5-A2PC 
        2.20         7.82        10.49        37.84         5.52        36.43 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        8.81         8.32         8.94         6.87         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EL 
        8.94         7.96         2.33        61.94        26.50        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A3OP 
       32.78        17.26         7.04        20.12         2.24         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QH 
        3.12         5.82         4.37         5.26         5.69         7.79 
TCGA-GV-A3QI TCGA-H4-A2HO 
        4.11         1.51 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              0.43               0.46 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
             75.32             118.88 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
             6.430              7.545 
[1] "0.4 - 75.3 (6.4)"  "0.5 - 118.9 (7.5)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
[1] "hr=" "2.4"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      6   11
  21Q GAIN WILD-TYPE   21   50
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  FEMALE                6                 21
  MALE                 11                 50
D38V4, continuous

Clustering(39) Variable = 22q gain mutation analysis
D39V1, survival
                    sevent
clus2                 0  1
  22Q GAIN MUTATED    8  0
  22Q GAIN WILD-TYPE 50 26
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 8                 76 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 0                 26 
$`22Q GAIN MUTATED`
TCGA-C4-A0F6 TCGA-DK-A1A6 TCGA-DK-A2I6 TCGA-G2-A2ES TCGA-GC-A3I6 TCGA-GV-A3JV 
        2.01        31.40        75.32        17.26         2.24         4.37 
TCGA-GV-A3JZ TCGA-GV-A3QI 
        5.69         4.11 

$`22Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A1HS 
        3.65         4.64         8.98         1.94         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 
        0.69        12.30         4.90         7.20         5.46         2.53 
TCGA-DK-A1A5 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD 
        2.14         8.98         7.04         8.91       118.88       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
        7.17         5.85         6.64         1.81        10.59         7.76 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
        2.20         3.98         7.82        10.49        37.84         5.52 
TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
        9.67        36.43         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE 
        4.01        11.05         8.94         7.96        32.02         2.33 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A3IB 
       61.94        26.50         5.65        26.93        32.78         7.04 
TCGA-G2-A3IE TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JW 
       20.12         7.69         2.10         3.12         5.82         5.26 
TCGA-GV-A3JX TCGA-GV-A3QH TCGA-H4-A2HO TCGA-H4-A2HQ 
        6.15         7.79         1.51         6.71 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              2.01               0.43 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             75.32             118.88 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              5.03               7.51 
[1] "2.0 - 75.3 (5.0)"  "0.4 - 118.9 (7.5)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
[1] "hr="     "8.1e+07"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      1    8
  22Q GAIN WILD-TYPE   26   53
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  FEMALE                1                 26
  MALE                  8                 53
D39V4, continuous

Clustering(40) Variable = Xq gain mutation analysis
D40V1, survival
                   sevent
clus2                0  1
  XQ GAIN MUTATED    4  1
  XQ GAIN WILD-TYPE 54 25
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                5                79 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                1                25 
$`XQ GAIN MUTATED`
TCGA-BL-A13J TCGA-FD-A3B6 TCGA-FT-A3EE TCGA-GD-A3OS TCGA-GV-A3QH 
        2.66         6.87         2.33         5.82         7.79 

$`XQ GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         6.74         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD 
        8.61         5.06         8.35         8.25         5.88         3.65 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        4.64         8.98         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 
        0.69        12.30         4.90         7.20         5.46         2.53 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        2.14        31.40         8.98         7.04         8.91       118.88 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 
      100.47         7.17         5.85         6.64         1.81        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ 
        7.76        75.32         2.20         3.98         7.82        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 
       37.84         5.52         9.67        36.43         8.81         8.32 
TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        8.94         4.01        11.05         8.94         7.96        32.02 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
       61.94        26.50         5.65        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        7.04        20.12         2.24         7.69         2.10         3.12 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QI TCGA-H4-A2HO 
        4.37         5.26         6.15         5.69         4.11         1.51 
TCGA-H4-A2HQ 
        6.71 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             2.33              0.43 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             7.79            118.88 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             5.82              7.69 
[1] "2.3 - 7.8 (5.8)"   "0.4 - 118.9 (7.7)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
[1] "hr=" "2.2"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      2    3
  XQ GAIN WILD-TYPE   25   58
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  FEMALE               2                25
  MALE                 3                58
D40V4, continuous
[1] "Remove cluster labels:" "XQ GAIN MUTATED"       
clus
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                2                21 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A3MG        TCGA-CF-A3MH 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A2HX        TCGA-DK-A3IV        TCGA-E5-A2PC        TCGA-G2-A2EF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A3QI 
"XQ GAIN WILD-TYPE" 

Clustering(41) Variable = 2p loss mutation analysis
D41V1, survival
                   sevent
clus2                0  1
  2P LOSS MUTATED    3  2
  2P LOSS WILD-TYPE 55 24
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                5                79 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                2                24 
$`2P LOSS MUTATED`
TCGA-DK-A2HX TCGA-DK-A3IV TCGA-G2-A2EL TCGA-GV-A3JV TCGA-GV-A3JW 
        1.81         9.67        26.93         4.37         5.26 

$`2P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        3.65         4.64         8.98         1.94         2.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.43         0.69        12.30         4.90         7.20         5.46 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        2.53         2.14        31.40         8.98         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 
      118.88       100.47         7.17         5.85         6.64        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ 
        7.76        75.32         2.20         3.98         7.82        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
       37.84         5.52        36.43         8.81         8.32         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        6.87         4.01        11.05         8.94         7.96        32.02 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A2ES 
        2.33        61.94        26.50         5.65        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        7.04        20.12         2.24         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO 
        5.82         6.15         5.69         7.79         4.11         1.51 
TCGA-H4-A2HQ 
        6.71 

  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             1.81              0.43 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            26.93            118.88 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             5.26              7.33 
[1] "1.8 - 26.9 (5.3)"  "0.4 - 118.9 (7.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "2P LOSS MUTATED"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "2P LOSS MUTATED"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "2P LOSS MUTATED"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      1    4
  2P LOSS WILD-TYPE   26   57
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  FEMALE               1                26
  MALE                 4                57
D41V4, continuous

Clustering(42) Variable = 2q loss mutation analysis
D42V1, survival
                   sevent
clus2                0  1
  2Q LOSS MUTATED    5  5
  2Q LOSS WILD-TYPE 53 21
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               10                74 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                5                21 
$`2Q LOSS MUTATED`
TCGA-BT-A20V TCGA-BT-A2LA TCGA-BT-A3PH TCGA-DK-A2HX TCGA-DK-A3IK TCGA-DK-A3IV 
        5.06         5.88         4.64         1.81         2.20         9.67 
TCGA-FD-A3B5 TCGA-G2-A2EL TCGA-GV-A3JV TCGA-GV-A3JW 
        8.94        26.93         4.37         5.26 

$`2Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-C4-A0EZ 
       14.89         8.61         8.35         8.25         3.65         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        1.94         2.01         0.46         0.43         0.69        12.30 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 
        4.90         7.20         5.46         2.53         2.14        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE 
        8.98         7.04         8.91       118.88       100.47         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IL 
        5.85         6.64        10.59         7.76        75.32         3.98 
TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-E5-A2PC TCGA-FD-A3B3 
        7.82        10.49        37.84         5.52        36.43         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.32         6.87         4.01        11.05         8.94         7.96 
TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EO 
       32.02         2.33        61.94        26.50         5.65        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP 
       17.26         7.04        20.12         2.24         7.69         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI 
        3.12         5.82         6.15         5.69         7.79         4.11 
TCGA-H4-A2HO TCGA-H4-A2HQ 
        1.51         6.71 

  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
             1.81              0.43 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
            26.93            118.88 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
            5.160             7.725 
[1] "1.8 - 26.9 (5.2)"  "0.4 - 118.9 (7.7)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
[1] "hr=" "2.7"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      2    9
  2Q LOSS WILD-TYPE   25   52
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  FEMALE               2                25
  MALE                 9                52
D42V4, continuous

Clustering(43) Variable = 3p loss mutation analysis
D43V1, survival
                   sevent
clus2                0  1
  3P LOSS MUTATED    5  2
  3P LOSS WILD-TYPE 53 24
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                7                77 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                2                24 
$`3P LOSS MUTATED`
TCGA-BT-A20V TCGA-CU-A3KJ TCGA-DK-A1A6 TCGA-DK-A1AB TCGA-DK-A2I2 TCGA-FD-A3N5 
        5.06         5.46        31.40         8.91         7.76         8.94 
TCGA-G2-A3IB 
        7.04 

$`3P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD 
       14.89         8.61         8.35         8.25         5.88         3.65 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        4.64         8.98         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-DK-A1A3 TCGA-DK-A1A5 
        0.69        12.30         4.90         7.20         2.53         2.14 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        8.98         7.04       118.88       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
        6.64         1.81        10.59        75.32         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC 
        7.82        10.49        37.84         5.52         9.67        36.43 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        8.81         8.32         8.94         6.87         4.01        11.05 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK 
        7.96        32.02         2.33        61.94        26.50         5.65 
TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 
       26.93        32.78        17.26        20.12         2.24         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX 
        2.10         3.12         5.82         4.37         5.26         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO TCGA-H4-A2HQ 
        5.69         7.79         4.11         1.51         6.71 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             5.06              0.43 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            31.40            118.88 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             7.76              7.20 
[1] "5.1 - 31.4 (7.8)"  "0.4 - 118.9 (7.2)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED      3    4
  3P LOSS WILD-TYPE   24   57
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  FEMALE               3                24
  MALE                 4                57
D43V4, continuous
[1] "Remove cluster labels:" "3P LOSS MUTATED"       
clus
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                1                22 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A3MG        TCGA-CF-A3MH 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A2HX        TCGA-DK-A3IV        TCGA-E5-A2PC        TCGA-G2-A2EF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IE        TCGA-GC-A3I6        TCGA-GD-A3OS 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 

Clustering(44) Variable = 4p loss mutation analysis
D44V1, survival
                   sevent
clus2                0  1
  4P LOSS MUTATED    9  5
  4P LOSS WILD-TYPE 49 21
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               14                70 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
                5                21 
$`4P LOSS MUTATED`
TCGA-BT-A20N TCGA-BT-A20V TCGA-BT-A3PH TCGA-DK-A1A7 TCGA-DK-A1AD TCGA-DK-A2I1 
       26.10         5.06         4.64         8.98       100.47        10.59 
TCGA-DK-A3IT TCGA-DK-A3IV TCGA-FD-A3B5 TCGA-G2-A3IB TCGA-GD-A2C5 TCGA-GV-A3JW 
        5.52         9.67         8.94         7.04         7.69         5.26 
TCGA-GV-A3JZ TCGA-H4-A2HQ 
        5.69         6.71 

$`4P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       19.00        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0EZ 
        8.61         8.35         8.25         5.88         3.65         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        1.94         2.01         0.46         0.43         0.69        12.30 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 
        4.90         7.20         5.46         2.53         2.14        31.40 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        7.04         8.91       118.88         7.17         5.85         6.64 
TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
        1.81         7.76        75.32         2.20         3.98         7.82 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 
       10.49        37.84        36.43         8.81         8.32         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE 
        4.01        11.05         8.94         7.96        32.02         2.33 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
       61.94        26.50         5.65        26.93        32.78        17.26 
TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV 
       20.12         2.24         2.10         3.12         5.82         4.37 
TCGA-GV-A3JX TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO 
        6.15         7.79         4.11         1.51 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             4.64              0.43 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           100.47            118.88 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            7.365             7.265 
[1] "4.6 - 100.5 (7.4)" "0.4 - 118.9 (7.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
[1] "hr=" "1.2"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED      5    9
  4P LOSS WILD-TYPE   22   52
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  FEMALE               5                22
  MALE                 9                52
D44V4, continuous

Clustering(45) Variable = 4q loss mutation analysis
D45V1, survival
                   sevent
clus2                0  1
  4Q LOSS MUTATED   10  5
  4Q LOSS WILD-TYPE 48 21
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               15                69 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
                5                21 
$`4Q LOSS MUTATED`
TCGA-BT-A20N TCGA-BT-A20V TCGA-BT-A3PH TCGA-C4-A0F0 TCGA-DK-A1AD TCGA-DK-A2I1 
       26.10         5.06         4.64         1.94       100.47        10.59 
TCGA-DK-A3IM TCGA-DK-A3IT TCGA-FD-A3B5 TCGA-G2-A2EL TCGA-G2-A3IB TCGA-GD-A2C5 
        7.82         5.52         8.94        26.93         7.04         7.69 
TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-H4-A2HQ 
        5.26         5.69         6.71 

$`4Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       19.00        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0EZ 
        8.61         8.35         8.25         5.88         3.65         8.98 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        2.01         0.46         0.43         0.69        12.30         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
        7.20         5.46         2.53         2.14        31.40         8.98 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        7.04         8.91       118.88         7.17         5.85         6.64 
TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IQ 
        1.81         7.76        75.32         2.20         3.98        10.49 
TCGA-DK-A3IS TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 
       37.84         9.67        36.43         8.81         8.32         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE 
        4.01        11.05         8.94         7.96        32.02         2.33 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IE 
       61.94        26.50         5.65        32.78        17.26        20.12 
TCGA-GC-A3I6 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JX 
        2.24         2.10         3.12         5.82         4.37         6.15 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO 
        7.79         4.11         1.51 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             1.94              0.43 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           100.47            118.88 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             7.04              7.33 
[1] "1.9 - 100.5 (7.0)" "0.4 - 118.9 (7.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
[1] "hr=" "1.1"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED      4   11
  4Q LOSS WILD-TYPE   23   50
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  FEMALE               4                23
  MALE                11                50
D45V4, continuous

Clustering(46) Variable = 5p loss mutation analysis
D46V1, survival
                   sevent
clus2                0  1
  5P LOSS MUTATED    7  2
  5P LOSS WILD-TYPE 51 24
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                9                75 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                2                24 
$`5P LOSS MUTATED`
TCGA-BT-A20J TCGA-BT-A3PH TCGA-C4-A0F6 TCGA-DK-A1A7 TCGA-DK-A2I1 TCGA-DK-A3IM 
       19.00         4.64         2.01         8.98        10.59         7.82 
TCGA-E5-A2PC TCGA-G2-A2EF TCGA-GV-A3JW 
       36.43        61.94         5.26 

$`5P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD 
        8.61         5.06         8.35         8.25         5.88         3.65 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        8.98         1.94         0.46         0.43         0.69        12.30 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 
        4.90         7.20         5.46         2.53         2.14        31.40 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        7.04         8.91       118.88       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
        6.64         1.81         7.76        75.32         2.20         3.98 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-FD-A3B3 TCGA-FD-A3B4 
       10.49        37.84         5.52         9.67         8.81         8.32 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.94         6.87         4.01        11.05         8.94         7.96 
TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
       32.02         2.33        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP 
       17.26         7.04        20.12         2.24         7.69         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH 
        3.12         5.82         4.37         6.15         5.69         7.79 
TCGA-GV-A3QI TCGA-H4-A2HO TCGA-H4-A2HQ 
        4.11         1.51         6.71 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             2.01              0.43 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
            61.94            118.88 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             8.98              7.17 
[1] "2.0 - 61.9 (9.0)"  "0.4 - 118.9 (7.2)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
[1] "hr=" "2.1"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      4    5
  5P LOSS WILD-TYPE   23   56
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  FEMALE               4                23
  MALE                 5                56
D46V4, continuous

Clustering(47) Variable = 5q loss mutation analysis
D47V1, survival
                   sevent
clus2                0  1
  5Q LOSS MUTATED   13  5
  5Q LOSS WILD-TYPE 45 21
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               18                66 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                5                21 
$`5Q LOSS MUTATED`
TCGA-BT-A20J TCGA-BT-A20V TCGA-BT-A3PH TCGA-C4-A0F6 TCGA-DK-A1A5 TCGA-DK-A1AD 
       19.00         5.06         4.64         2.01         2.14       100.47 
TCGA-DK-A2I1 TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-E5-A2PC TCGA-FD-A3N5 TCGA-G2-A2EF 
       10.59         7.82        10.49        36.43         8.94        61.94 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GD-A2C5 TCGA-GV-A3JW TCGA-GV-A3JX TCGA-H4-A2HQ 
        7.04        20.12         7.69         5.26         6.15         6.71 

$`5Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0EZ 
        8.61         8.35         8.25         5.88         3.65         8.98 
TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        1.94         0.46         0.43         0.69        12.30         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        7.20         5.46         2.53        31.40         8.98         7.04 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
        8.91       118.88         7.17         5.85         6.64         1.81 
TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IS TCGA-DK-A3IT 
        7.76        75.32         2.20         3.98        37.84         5.52 
TCGA-DK-A3IV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
        9.67         8.81         8.32         8.94         6.87         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EK 
       11.05         7.96        32.02         2.33        26.50         5.65 
TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-GC-A3I6 TCGA-GD-A3OP TCGA-GD-A3OQ 
       26.93        32.78        17.26         2.24         2.10         3.12 
TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO 
        5.82         4.37         5.69         7.79         4.11         1.51 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             2.01              0.43 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           100.47            118.88 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            7.755             7.185 
[1] "2.0 - 100.5 (7.8)" "0.4 - 118.9 (7.2)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
[1] "hr=" "1.4"
D47V2, continuous
D47V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED      6   13
  5Q LOSS WILD-TYPE   21   48
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  FEMALE               6                21
  MALE                13                48
D47V4, continuous

Clustering(48) Variable = 6p loss mutation analysis
D48V1, survival
                   sevent
clus2                0  1
  6P LOSS MUTATED    7  3
  6P LOSS WILD-TYPE 51 23
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               10                74 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                3                23 
$`6P LOSS MUTATED`
TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A3PH TCGA-DK-A1A3 TCGA-DK-A1AB TCGA-DK-A3IL 
        5.06         8.25         4.64         2.53         8.91         3.98 
TCGA-DK-A3IQ TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QI 
       10.49         5.26         5.69         4.11 

$`6P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0EZ 
       14.89         8.61         8.35         5.88         3.65         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        1.94         2.01         0.46         0.43         0.69        12.30 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
        4.90         7.20         5.46         2.14        31.40         8.98 
TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        7.04       118.88       100.47         7.17         5.85         6.64 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM 
        1.81        10.59         7.76        75.32         2.20         7.82 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 
       37.84         5.52         9.67        36.43         8.81         8.32 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.94         6.87         4.01        11.05         8.94         7.96 
TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
       32.02         2.33        61.94        26.50         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 
       32.78        17.26         7.04        20.12         2.24         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3QH 
        2.10         3.12         5.82         4.37         6.15         7.79 
TCGA-H4-A2HO TCGA-H4-A2HQ 
        1.51         6.71 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             2.53              0.43 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            10.49            118.88 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            5.160             7.725 
[1] "2.5 - 10.5 (5.2)"  "0.4 - 118.9 (7.7)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
[1] "hr=" "2.5"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      3    8
  6P LOSS WILD-TYPE   24   53
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  FEMALE               3                24
  MALE                 8                53
D48V4, continuous

Clustering(49) Variable = 6q loss mutation analysis
D49V1, survival
                   sevent
clus2                0  1
  6Q LOSS MUTATED   13  3
  6Q LOSS WILD-TYPE 45 23
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               16                68 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
                3                23 
$`6Q LOSS MUTATED`
TCGA-BT-A20V TCGA-BT-A3PH TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1AB TCGA-DK-A2I1 
        5.06         4.64         2.53        31.40         8.91        10.59 
TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-E5-A2PC TCGA-FD-A3B5 TCGA-G2-A2ES TCGA-GV-A3JW 
        3.98        10.49        36.43         8.94        17.26         5.26 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QI TCGA-H4-A2HQ 
        6.15         5.69         4.11         6.71 

$`6Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD 
       14.89         8.61         8.35         8.25         5.88         3.65 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
        8.98         1.94         2.01         0.46         0.43         0.69 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-DK-A1A7 
       12.30         4.90         7.20         5.46         2.14         8.98 
TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        7.04       118.88       100.47         7.17         5.85         6.64 
TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IS 
        1.81         7.76        75.32         2.20         7.82        37.84 
TCGA-DK-A3IT TCGA-DK-A3IV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B7 
        5.52         9.67         8.81         8.32         6.87         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EF 
       11.05         8.94         7.96        32.02         2.33        61.94 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A3IB TCGA-G2-A3IE 
       26.50         5.65        26.93        32.78         7.04        20.12 
TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV 
        2.24         7.69         2.10         3.12         5.82         4.37 
TCGA-GV-A3QH TCGA-H4-A2HO 
        7.79         1.51 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             2.53              0.43 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            36.43            118.88 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             6.43              7.51 
[1] "2.5 - 36.4 (6.4)"  "0.4 - 118.9 (7.5)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
[1] "hr=" "1.7"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      6   11
  6Q LOSS WILD-TYPE   21   50
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  FEMALE               6                21
  MALE                11                50
D49V4, continuous

Clustering(50) Variable = 8p loss mutation analysis
D50V1, survival
                   sevent
clus2                0  1
  8P LOSS MUTATED   21  5
  8P LOSS WILD-TYPE 37 21
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               26                58 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
                5                21 
$`8P LOSS MUTATED`
TCGA-BL-A13J TCGA-BT-A20W TCGA-C4-A0EZ TCGA-CF-A1HS TCGA-DK-A1A3 TCGA-DK-A1AC 
        2.66         8.35         8.98         0.43         2.53       118.88 
TCGA-DK-A1AD TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
      100.47        10.59        75.32         2.20         3.98         7.82 
TCGA-DK-A3IT TCGA-DK-A3IV TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3N5 TCGA-G2-A2EF 
        5.52         9.67         8.32         6.87         8.94        61.94 
TCGA-G2-A2EK TCGA-G2-A3IE TCGA-GD-A2C5 TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ 
        5.65        20.12         7.69         5.26         6.15         5.69 
TCGA-GV-A3QH TCGA-H4-A2HQ 
        7.79         6.71 

$`8P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         6.74         6.58        11.93        19.00 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       26.10        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH 
        8.61         5.06         8.25         5.88         3.65         4.64 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        1.94         2.01         0.46         0.69        12.30         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        7.20         5.46         2.14        31.40         8.98         7.04 
TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 
        8.91         7.17         5.85         6.64         1.81         7.76 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B5 TCGA-FD-A3B7 
       10.49        37.84        36.43         8.81         8.94         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EL 
       11.05         7.96        32.02         2.33        26.50        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-GC-A3I6 TCGA-GD-A3OP TCGA-GD-A3OQ 
       32.78        17.26         7.04         2.24         2.10         3.12 
TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3QI TCGA-H4-A2HO 
        5.82         4.37         4.11         1.51 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             0.43              0.46 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           118.88             37.84 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            7.740             7.185 
[1] "0.4 - 118.9 (7.7)" "0.5 - 37.8 (7.2)" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
[1] "hr=" "1.9"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED      7   20
  8P LOSS WILD-TYPE   20   41
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  FEMALE               7                20
  MALE                20                41
D50V4, continuous

Clustering(51) Variable = 8q loss mutation analysis
D51V1, survival
                   sevent
clus2                0  1
  8Q LOSS MUTATED    3  0
  8Q LOSS WILD-TYPE 55 26
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                3                81 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                0                26 
$`8Q LOSS MUTATED`
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-H4-A2HQ 
        3.98         7.82         6.71 

$`8Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        3.65         4.64         8.98         1.94         2.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.43         0.69        12.30         4.90         7.20         5.46 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        2.53         2.14        31.40         8.98         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
      118.88       100.47         7.17         5.85         6.64         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IQ TCGA-DK-A3IS 
       10.59         7.76        75.32         2.20        10.49        37.84 
TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
        5.52         9.67        36.43         8.81         8.32         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        6.87         4.01        11.05         8.94         7.96        32.02 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        2.33        61.94        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP 
       17.26         7.04        20.12         2.24         7.69         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ 
        3.12         5.82         4.37         5.26         6.15         5.69 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO 
        7.79         4.11         1.51 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             3.98              0.43 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             7.82            118.88 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             6.71              7.33 
[1] "4.0 - 7.8 (6.7)"   "0.4 - 118.9 (7.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
[1] "hr="     "9400000"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      2    1
  8Q LOSS WILD-TYPE   25   60
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  FEMALE               2                25
  MALE                 1                60
D51V4, continuous

Clustering(52) Variable = 9p loss mutation analysis
D52V1, survival
                   sevent
clus2                0  1
  9P LOSS MUTATED   18  7
  9P LOSS WILD-TYPE 40 19
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               25                59 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
                7                19 
$`9P LOSS MUTATED`
TCGA-BT-A20N TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20W TCGA-C4-A0F0 
       26.10        17.85        19.46        14.89         8.35         1.94 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 
        2.01         0.46         0.69         5.46         2.53         2.14 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AG TCGA-DK-A3IK TCGA-DK-A3IQ TCGA-DK-A3IS 
        7.04         8.91         6.64         2.20        10.49        37.84 
TCGA-DK-A3IT TCGA-E5-A2PC TCGA-FD-A3B5 TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A3IB 
        5.52        36.43         8.94         5.65        32.78         7.04 
TCGA-GV-A3JW 
        5.26 

$`9P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20X 
       19.00        12.16         5.06         8.61         5.06         8.25 
TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-CF-A1HS TCGA-CU-A0YN 
        5.88         3.65         4.64         8.98         0.43        12.30 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AC TCGA-DK-A1AD 
        4.90         7.20        31.40         8.98       118.88       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 
        7.17         5.85         1.81        10.59         7.76        75.32 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 
        3.98         7.82         9.67         8.81         8.32         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE 
        4.01        11.05         8.94         7.96        32.02         2.33 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EL TCGA-G2-A2ES TCGA-G2-A3IE TCGA-GC-A3I6 
       61.94        26.50        26.93        17.26        20.12         2.24 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JX 
        7.69         2.10         3.12         5.82         4.37         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO TCGA-H4-A2HQ 
        5.69         7.79         4.11         1.51         6.71 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.46              0.43 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            37.84            118.88 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             7.04              7.69 
[1] "0.5 - 37.8 (7.0)"  "0.4 - 118.9 (7.7)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED      4   24
  9P LOSS WILD-TYPE   23   37
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  FEMALE               4                23
  MALE                24                37
D52V4, continuous

Clustering(53) Variable = 9q loss mutation analysis
D53V1, survival
                   sevent
clus2                0  1
  9Q LOSS MUTATED   15  7
  9Q LOSS WILD-TYPE 43 19
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               22                62 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
                7                19 
$`9Q LOSS MUTATED`
TCGA-BT-A20N TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-C4-A0F6 TCGA-CF-A1HR 
       26.10        17.85        19.46        14.89         2.01         0.46 
TCGA-CF-A27C TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-DK-A1AA TCGA-DK-A1AG TCGA-DK-A3IQ 
        0.69         5.46         2.14         7.04         6.64        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-E5-A2PC TCGA-FD-A3B5 TCGA-G2-A2EK TCGA-G2-A2EL 
       37.84         5.52        36.43         8.94         5.65        26.93 
TCGA-G2-A2EO TCGA-GD-A2C5 TCGA-GV-A3JV TCGA-GV-A3JW 
       32.78         7.69         4.37         5.26 

$`9Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W 
       19.00        12.16         5.06         8.61         5.06         8.35 
TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 
        8.25         5.88         3.65         4.64         8.98         1.94 
TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-DK-A1A3 TCGA-DK-A1A6 
        0.43        12.30         4.90         7.20         2.53        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        8.98         8.91       118.88       100.47         7.17         5.85 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
        1.81        10.59         7.76        75.32         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B7 
        7.82         9.67         8.81         8.32         6.87         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EF 
       11.05         8.94         7.96        32.02         2.33        61.94 
TCGA-G2-A2EJ TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A3OP 
       26.50        17.26         7.04        20.12         2.24         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI 
        3.12         5.82         6.15         5.69         7.79         4.11 
TCGA-H4-A2HO TCGA-H4-A2HQ 
        1.51         6.71 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.46              0.43 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            37.84            118.88 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            7.365             7.265 
[1] "0.5 - 37.8 (7.4)"  "0.4 - 118.9 (7.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J        TCGA-BT-A20N 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q        TCGA-BT-A20R 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V        TCGA-BT-A20W 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LD        TCGA-BT-A3PH 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6        TCGA-CF-A1HR 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CU-A0YN        TCGA-CU-A0YO 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CU-A0YR        TCGA-CU-A3KJ        TCGA-DK-A1A3        TCGA-DK-A1A5 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DK-A1A6        TCGA-DK-A1A7        TCGA-DK-A1AA        TCGA-DK-A1AB 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A1AC        TCGA-DK-A1AD        TCGA-DK-A1AE        TCGA-DK-A1AF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A1AG        TCGA-DK-A2HX        TCGA-DK-A2I1        TCGA-DK-A2I2 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A2I6        TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IV 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-E5-A2PC        TCGA-FD-A3B3        TCGA-FD-A3B4        TCGA-FD-A3B5 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8        TCGA-FD-A3N5 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FT-A3EE        TCGA-G2-A2EF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-G2-A2EJ        TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-G2-A2ES        TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-GC-A3I6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GD-A2C5        TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GV-A3JV        TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-H4-A2HO        TCGA-H4-A2HQ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      4   21
  9Q LOSS WILD-TYPE   23   40
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  FEMALE               4                23
  MALE                21                40
D53V4, continuous

Clustering(54) Variable = 10p loss mutation analysis
D54V1, survival
                    sevent
clus2                 0  1
  10P LOSS MUTATED   11  2
  10P LOSS WILD-TYPE 47 24
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                13                 71 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                 2                 24 
$`10P LOSS MUTATED`
TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0F0 TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-E5-A2PC 
        5.88         3.65         1.94         7.20         5.46        36.43 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3N5 TCGA-G2-A2EL TCGA-GV-A3JX TCGA-GV-A3QI 
        8.32         8.94         8.94        26.93         6.15         4.11 
TCGA-H4-A2HQ 
        6.71 

$`10P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A3PH 
       14.89         8.61         5.06         8.35         8.25         4.64 
TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        8.98         2.01         0.46         0.43         0.69        12.30 
TCGA-CU-A0YO TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        4.90         2.53         2.14        31.40         8.98         7.04 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        8.91       118.88       100.47         7.17         5.85         6.64 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
        1.81        10.59         7.76        75.32         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-FD-A3B3 
        7.82        10.49        37.84         5.52         9.67         8.81 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE 
        6.87         4.01        11.05         7.96        32.02         2.33 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
       61.94        26.50         5.65        32.78        17.26         7.04 
TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
       20.12         2.24         7.69         2.10         3.12         5.82 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-H4-A2HO 
        4.37         5.26         5.69         7.79         1.51 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              1.94               0.43 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             36.43             118.88 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              6.71               7.69 
[1] "1.9 - 36.4 (6.7)"  "0.4 - 118.9 (7.7)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
[1] "hr=" "1.9"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      4    9
  10P LOSS WILD-TYPE   23   52
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  FEMALE                4                 23
  MALE                  9                 52
D54V4, continuous

Clustering(55) Variable = 10q loss mutation analysis
D55V1, survival
                    sevent
clus2                 0  1
  10Q LOSS MUTATED   13  1
  10Q LOSS WILD-TYPE 45 25
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                14                 70 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                 1                 25 
$`10Q LOSS MUTATED`
TCGA-BT-A2LD TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A5 
        3.65         1.94         2.01         7.20         5.46         2.14 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-E5-A2PC TCGA-FD-A3N5 TCGA-GV-A3JX 
        2.20         3.98         7.82        36.43         8.94         6.15 
TCGA-GV-A3QI TCGA-H4-A2HQ 
        4.11         6.71 

$`10Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        4.64         8.98         0.46         0.43         0.69        12.30 
TCGA-CU-A0YO TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        4.90         2.53        31.40         8.98         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
      118.88       100.47         7.17         5.85         6.64         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
       10.59         7.76        75.32        10.49        37.84         5.52 
TCGA-DK-A3IV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
        9.67         8.81         8.32         8.94         6.87         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ 
       11.05         7.96        32.02         2.33        61.94        26.50 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
        5.65        26.93        32.78        17.26         7.04        20.12 
TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV 
        2.24         7.69         2.10         3.12         5.82         4.37 
TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-H4-A2HO 
        5.26         5.69         7.79         1.51 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              1.94               0.43 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             36.43             118.88 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             4.785              7.875 
[1] "1.9 - 36.4 (4.8)"  "0.4 - 118.9 (7.9)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
[1] "hr=" "2.2"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      5    9
  10Q LOSS WILD-TYPE   22   52
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  FEMALE                5                 22
  MALE                  9                 52
D55V4, continuous

Clustering(56) Variable = 11p loss mutation analysis
D56V1, survival
                    sevent
clus2                 0  1
  11P LOSS MUTATED   19  9
  11P LOSS WILD-TYPE 39 17
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                28                 56 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                 9                 17 
$`11P LOSS MUTATED`
TCGA-BL-A13J TCGA-BT-A20N TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A3PH 
        2.66        26.10        14.89         5.06         8.35         4.64 
TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A3KJ TCGA-DK-A1A5 
        8.98         2.01         0.46         0.69         5.46         2.14 
TCGA-DK-A1A6 TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I6 
       31.40         8.91       100.47         1.81        10.59        75.32 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IS TCGA-DK-A3IT TCGA-E5-A2PC TCGA-FD-A3B5 
        2.20         3.98        37.84         5.52        36.43         8.94 
TCGA-G2-A2ES TCGA-GD-A2C5 TCGA-GV-A3JW TCGA-H4-A2HQ 
       17.26         7.69         5.26         6.71 

$`11P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       12.79         7.33         6.74         6.58        11.93        19.00 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20X 
       12.16        17.85        19.46         5.06         8.61         8.25 
TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0F0 TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YO 
        5.88         3.65         1.94         0.43        12.30         4.90 
TCGA-CU-A0YR TCGA-DK-A1A3 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AE 
        7.20         2.53         8.98         7.04       118.88         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I2 TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IV 
        5.85         6.64         7.76         7.82        10.49         9.67 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.81         8.32         6.87         4.01        11.05         8.94 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK 
        7.96        32.02         2.33        61.94        26.50         5.65 
TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A3OP 
       26.93        32.78         7.04        20.12         2.24         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH 
        3.12         5.82         4.37         6.15         5.69         7.79 
TCGA-GV-A3QI TCGA-H4-A2HO 
        4.11         1.51 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.46               0.43 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            100.47             118.88 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             7.200              7.265 
[1] "0.5 - 100.5 (7.2)" "0.4 - 118.9 (7.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
[1] "hr=" "1.1"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     10   21
  11P LOSS WILD-TYPE   17   40
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  FEMALE               10                 17
  MALE                 21                 40
D56V4, continuous

Clustering(57) Variable = 11q loss mutation analysis
D57V1, survival
                    sevent
clus2                 0  1
  11Q LOSS MUTATED   13  9
  11Q LOSS WILD-TYPE 45 17
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                22                 62 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                 9                 17 
$`11Q LOSS MUTATED`
TCGA-BT-A20N TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A3PH 
       26.10        14.89         5.06         8.35         5.88         4.64 
TCGA-C4-A0EZ TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A3KJ TCGA-DK-A1A5 
        8.98         0.43         0.69        12.30         5.46         2.14 
TCGA-DK-A1A6 TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A2I6 TCGA-DK-A3IS TCGA-E5-A2PC 
       31.40         8.91       100.47        75.32        37.84        36.43 
TCGA-FD-A3B5 TCGA-G2-A2ES TCGA-GD-A2C5 TCGA-GV-A3JW 
        8.94        17.26         7.69         5.26 

$`11Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U 
       19.00        12.16        17.85        19.46         5.06         8.61 
TCGA-BT-A20X TCGA-BT-A2LD TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CU-A0YO 
        8.25         3.65         1.94         2.01         0.46         4.90 
TCGA-CU-A0YR TCGA-DK-A1A3 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AE 
        7.20         2.53         8.98         7.04       118.88         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IK 
        5.85         6.64         1.81        10.59         7.76         2.20 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IV TCGA-FD-A3B3 
        3.98         7.82        10.49         5.52         9.67         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.32         6.87         4.01        11.05         8.94         7.96 
TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
       32.02         2.33        61.94        26.50         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A3OP TCGA-GD-A3OQ 
       32.78         7.04        20.12         2.24         2.10         3.12 
TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI 
        5.82         4.37         6.15         5.69         7.79         4.11 
TCGA-H4-A2HO TCGA-H4-A2HQ 
        1.51         6.71 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              0.43               0.46 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            100.47             118.88 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             8.925              7.040 
[1] "0.4 - 100.5 (8.9)" "0.5 - 118.9 (7.0)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      6   18
  11Q LOSS WILD-TYPE   21   43
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  FEMALE                6                 21
  MALE                 18                 43
D57V4, continuous

Clustering(58) Variable = 13q loss mutation analysis
D58V1, survival
                    sevent
clus2                 0  1
  13Q LOSS MUTATED    8  4
  13Q LOSS WILD-TYPE 50 22
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                12                 72 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                 4                 22 
$`13Q LOSS MUTATED`
TCGA-BT-A20N TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LA TCGA-C4-A0F0 TCGA-DK-A1A3 
       26.10         5.06         8.25         5.88         1.94         2.53 
TCGA-DK-A1A5 TCGA-DK-A1AC TCGA-DK-A2I6 TCGA-G2-A2ES TCGA-GV-A3JW TCGA-GV-A3QI 
        2.14       118.88        75.32        17.26         5.26         4.11 

$`13Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       19.00        12.16        17.85        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F6 
        8.61         8.35         3.65         4.64         8.98         2.01 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR 
        0.46         0.43         0.69        12.30         4.90         7.20 
TCGA-CU-A3KJ TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD 
        5.46        31.40         8.98         7.04         8.91       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
        7.17         5.85         6.64         1.81        10.59         7.76 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
        2.20         3.98         7.82        10.49        37.84         5.52 
TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
        9.67        36.43         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE 
        4.01        11.05         8.94         7.96        32.02         2.33 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A3IB 
       61.94        26.50         5.65        26.93        32.78         7.04 
TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
       20.12         2.24         7.69         2.10         3.12         5.82 
TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-H4-A2HO TCGA-H4-A2HQ 
        4.37         6.15         5.69         7.79         1.51         6.71 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              1.94               0.43 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            118.88             100.47 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              5.57               7.51 
[1] "1.9 - 118.9 (5.6)" "0.4 - 100.5 (7.5)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D58V2, continuous
D58V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED      1   12
  13Q LOSS WILD-TYPE   26   49
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  FEMALE                1                 26
  MALE                 12                 49
D58V4, continuous

Clustering(59) Variable = 14q loss mutation analysis
D59V1, survival
                    sevent
clus2                 0  1
  14Q LOSS MUTATED    9  4
  14Q LOSS WILD-TYPE 49 22
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                13                 71 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                 4                 22 
$`14Q LOSS MUTATED`
TCGA-BT-A20J TCGA-BT-A20T TCGA-BT-A20V TCGA-CF-A1HS TCGA-CU-A0YR TCGA-DK-A1A3 
       19.00        14.89         5.06         0.43         7.20         2.53 
TCGA-DK-A1A5 TCGA-DK-A1AD TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IS TCGA-G2-A2EF 
        2.14       100.47        10.59        75.32        37.84        61.94 
TCGA-GV-A3JZ 
        5.69 

$`14Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U 
       26.10        12.16        17.85        19.46         5.06         8.61 
TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ 
        8.35         8.25         5.88         3.65         4.64         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        1.94         2.01         0.46         0.69        12.30         4.90 
TCGA-CU-A3KJ TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        5.46        31.40         8.98         7.04         8.91       118.88 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A3IK 
        7.17         5.85         6.64         1.81         7.76         2.20 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC 
        3.98         7.82        10.49         5.52         9.67        36.43 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        8.81         8.32         8.94         6.87         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EK 
        8.94         7.96        32.02         2.33        26.50         5.65 
TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 
       26.93        32.78        17.26         7.04        20.12         2.24 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW 
        7.69         2.10         3.12         5.82         4.37         5.26 
TCGA-GV-A3JX TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO TCGA-H4-A2HQ 
        6.15         7.79         4.11         1.51         6.71 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              0.43               0.46 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
            100.47             118.88 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             10.59               7.17 
[1] "0.4 - 100.5 (10.6)" "0.5 - 118.9 (7.2)" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      3   10
  14Q LOSS WILD-TYPE   24   51
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  FEMALE                3                 24
  MALE                 10                 51
D59V4, continuous

Clustering(60) Variable = 15q loss mutation analysis
D60V1, survival
                    sevent
clus2                 0  1
  15Q LOSS MUTATED    8  4
  15Q LOSS WILD-TYPE 50 22
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                12                 72 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 4                 22 
$`15Q LOSS MUTATED`
TCGA-BT-A20X TCGA-C4-A0EZ TCGA-CF-A1HS TCGA-CU-A3KJ TCGA-DK-A3IM TCGA-E5-A2PC 
        8.25         8.98         0.43         5.46         7.82        36.43 
TCGA-FD-A3NA TCGA-G2-A2EF TCGA-G2-A2EL TCGA-G2-A3IE TCGA-GV-A3JX TCGA-H4-A2HQ 
       32.02        61.94        26.93        20.12         6.15         6.71 

$`15Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A2LD 
       14.89         8.61         5.06         8.35         5.88         3.65 
TCGA-BT-A3PH TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YN 
        4.64         1.94         2.01         0.46         0.69        12.30 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
        4.90         7.20         2.53         2.14        31.40         8.98 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        7.04         8.91       118.88       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK 
        6.64         1.81        10.59         7.76        75.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-FD-A3B3 
        3.98        10.49        37.84         5.52         9.67         8.81 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        8.32         8.94         6.87         4.01        11.05         8.94 
TCGA-FD-A3N6 TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A2ES 
        7.96         2.33        26.50         5.65        32.78        17.26 
TCGA-G2-A3IB TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
        7.04         2.24         7.69         2.10         3.12         5.82 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO 
        4.37         5.26         5.69         7.79         4.11         1.51 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              0.43               0.46 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             61.94             118.88 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             8.615              7.105 
[1] "0.4 - 61.9 (8.6)"  "0.5 - 118.9 (7.1)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
[1] "hr=" "1.7"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      4    8
  15Q LOSS WILD-TYPE   23   53
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  FEMALE                4                 23
  MALE                  8                 53
D60V4, continuous

Clustering(61) Variable = 16p loss mutation analysis
D61V1, survival
                    sevent
clus2                 0  1
  16P LOSS MUTATED    9  1
  16P LOSS WILD-TYPE 49 25
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                10                 74 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 1                 25 
$`16P LOSS MUTATED`
TCGA-CU-A0YN TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1AC TCGA-DK-A2HX TCGA-G2-A2EF 
       12.30         5.46         2.53       118.88         1.81        61.94 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI 
        6.15         5.69         7.79         4.11 

$`16P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        3.65         4.64         8.98         1.94         2.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR TCGA-DK-A1A5 TCGA-DK-A1A6 
        0.43         0.69         4.90         7.20         2.14        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
        8.98         7.04         8.91       100.47         7.17         5.85 
TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
        6.64        10.59         7.76        75.32         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC 
        7.82        10.49        37.84         5.52         9.67        36.43 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        8.81         8.32         8.94         6.87         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EK 
        8.94         7.96        32.02         2.33        26.50         5.65 
TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 
       26.93        32.78        17.26         7.04        20.12         2.24 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW 
        7.69         2.10         3.12         5.82         4.37         5.26 
TCGA-H4-A2HO TCGA-H4-A2HQ 
        1.51         6.71 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              1.81               0.43 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            118.88             100.47 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              5.92               7.51 
[1] "1.8 - 118.9 (5.9)" "0.4 - 100.5 (7.5)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
[1] "hr=" "3.4"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      1   10
  16P LOSS WILD-TYPE   26   51
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  FEMALE                1                 26
  MALE                 10                 51
D61V4, continuous

Clustering(62) Variable = 16q loss mutation analysis
D62V1, survival
                    sevent
clus2                 0  1
  16Q LOSS MUTATED    7  2
  16Q LOSS WILD-TYPE 51 24
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 9                 75 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 2                 24 
$`16Q LOSS MUTATED`
TCGA-CU-A0YN TCGA-DK-A1A3 TCGA-DK-A1AC TCGA-DK-A2HX TCGA-DK-A3IV TCGA-GV-A3JX 
       12.30         2.53       118.88         1.81         9.67         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI 
        5.69         7.79         4.11 

$`16Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        3.65         4.64         8.98         1.94         2.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A5 
        0.43         0.69         4.90         7.20         5.46         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE 
       31.40         8.98         7.04         8.91       100.47         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK 
        5.85         6.64        10.59         7.76        75.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-E5-A2PC 
        3.98         7.82        10.49        37.84         5.52        36.43 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        8.81         8.32         8.94         6.87         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ 
        8.94         7.96        32.02         2.33        61.94        26.50 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
        5.65        26.93        32.78        17.26         7.04        20.12 
TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV 
        2.24         7.69         2.10         3.12         5.82         4.37 
TCGA-GV-A3JW TCGA-H4-A2HO TCGA-H4-A2HQ 
        5.26         1.51         6.71 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              1.81               0.43 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            118.88             100.47 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              6.15               7.33 
[1] "1.8 - 118.9 (6.2)" "0.4 - 100.5 (7.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      1    9
  16Q LOSS WILD-TYPE   26   52
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  FEMALE                1                 26
  MALE                  9                 52
D62V4, continuous

Clustering(63) Variable = 17p loss mutation analysis
D63V1, survival
                    sevent
clus2                 0  1
  17P LOSS MUTATED   20  8
  17P LOSS WILD-TYPE 38 18
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                28                 56 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                 8                 18 
$`17P LOSS MUTATED`
TCGA-BT-A20N TCGA-BT-A20P TCGA-BT-A20T TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A3PH 
       26.10        17.85        14.89         8.25         5.88         4.64 
TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A3KJ TCGA-DK-A1AB TCGA-DK-A2HX 
        1.94         0.46         0.69         5.46         8.91         1.81 
TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC 
        3.98        10.49        37.84         5.52         9.67        36.43 
TCGA-FD-A3B4 TCGA-FD-A3NA TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EL TCGA-G2-A2EO 
        8.32        32.02        61.94        26.50        26.93        32.78 
TCGA-G2-A3IE TCGA-GD-A3OP TCGA-GV-A3JW TCGA-H4-A2HQ 
       20.12         2.10         5.26         6.71 

$`17P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20V 
       19.00        12.16        19.46         5.06         8.61         5.06 
TCGA-BT-A20W TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CU-A0YN 
        8.35         3.65         8.98         2.01         0.43        12.30 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
        4.90         7.20         2.53         2.14        31.40         8.98 
TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        7.04       118.88       100.47         7.17         5.85         6.64 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM TCGA-FD-A3B3 
       10.59         7.76        75.32         2.20         7.82         8.81 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.94         6.87         4.01        11.05         8.94         7.96 
TCGA-FT-A3EE TCGA-G2-A2EK TCGA-G2-A2ES TCGA-G2-A3IB TCGA-GC-A3I6 TCGA-GD-A2C5 
        2.33         5.65        17.26         7.04         2.24         7.69 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH 
        3.12         5.82         4.37         6.15         5.69         7.79 
TCGA-GV-A3QI TCGA-H4-A2HO 
        4.11         1.51 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              0.46               0.43 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             61.94             118.88 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             8.615              7.105 
[1] "0.5 - 61.9 (8.6)"  "0.4 - 118.9 (7.1)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
[1] "hr=" "2"  
D63V2, continuous
D63V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED      9   20
  17P LOSS WILD-TYPE   18   41
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  FEMALE                9                 18
  MALE                 20                 41
D63V4, continuous

Clustering(64) Variable = 17q loss mutation analysis
D64V1, survival
                    sevent
clus2                 0  1
  17Q LOSS MUTATED    3  1
  17Q LOSS WILD-TYPE 55 25
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 4                 80 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 1                 25 
$`17Q LOSS MUTATED`
TCGA-BT-A2LA TCGA-DK-A1AB TCGA-G2-A3IE TCGA-GV-A3JW 
        5.88         8.91        20.12         5.26 

$`17Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD 
       14.89         8.61         5.06         8.35         8.25         3.65 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        4.64         8.98         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 
        0.69        12.30         4.90         7.20         5.46         2.53 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AD 
        2.14        31.40         8.98         7.04       118.88       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
        7.17         5.85         6.64         1.81        10.59         7.76 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS 
       75.32         2.20         3.98         7.82        10.49        37.84 
TCGA-DK-A3IT TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
        5.52         9.67        36.43         8.81         8.32         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        6.87         4.01        11.05         8.94         7.96        32.02 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        2.33        61.94        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
       17.26         7.04         2.24         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI 
        5.82         4.37         6.15         5.69         7.79         4.11 
TCGA-H4-A2HO TCGA-H4-A2HQ 
        1.51         6.71 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              5.26               0.43 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             20.12             118.88 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             7.395              7.265 
[1] "5.3 - 20.1 (7.4)"  "0.4 - 118.9 (7.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      1    3
  17Q LOSS WILD-TYPE   26   58
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  FEMALE                1                 26
  MALE                  3                 58
D64V4, continuous
[1] "Remove cluster labels:" "17Q LOSS MUTATED"      
clus
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 2                 21 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CF-A3MG 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CF-A3MH         TCGA-DK-A2HX         TCGA-DK-A3IV 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-G2-A2EF         TCGA-G2-A2EJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A2EK         TCGA-G2-A2EL         TCGA-G2-A2EO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A2ES         TCGA-G2-A3IB         TCGA-GC-A3I6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GV-A3JZ         TCGA-GV-A3QH         TCGA-GV-A3QI 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 

Clustering(65) Variable = 18p loss mutation analysis
D65V1, survival
                    sevent
clus2                 0  1
  18P LOSS MUTATED   10  2
  18P LOSS WILD-TYPE 48 24
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                12                 72 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 2                 24 
$`18P LOSS MUTATED`
TCGA-BT-A20J TCGA-BT-A20N TCGA-DK-A1A3 TCGA-DK-A1A7 TCGA-DK-A1AB TCGA-DK-A1AD 
       19.00        26.10         2.53         8.98         8.91       100.47 
TCGA-DK-A2I1 TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-E5-A2PC TCGA-GV-A3JW 
       10.59         3.98        10.49         5.52        36.43         5.26 

$`18P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.85        19.46         5.06        14.89         8.61 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH 
        5.06         8.35         8.25         5.88         3.65         4.64 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
        8.98         1.94         2.01         0.46         0.43         0.69 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-DK-A1A6 
       12.30         4.90         7.20         5.46         2.14        31.40 
TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
        7.04       118.88         7.17         5.85         6.64         1.81 
TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IS TCGA-DK-A3IV 
        7.76        75.32         2.20         7.82        37.84         9.67 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        8.81         8.32         8.94         6.87         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ 
        8.94         7.96        32.02         2.33        61.94        26.50 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
        5.65        26.93        32.78        17.26         7.04        20.12 
TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV 
        2.24         7.69         2.10         3.12         5.82         4.37 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HO TCGA-H4-A2HQ 
        6.15         5.69         7.79         4.11         1.51         6.71 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              2.53               0.43 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
            100.47             118.88 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             9.735              7.105 
[1] "2.5 - 100.5 (9.7)" "0.4 - 118.9 (7.1)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
[1] "hr=" "3.1"
D65V2, continuous
D65V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      5    8
  18P LOSS WILD-TYPE   22   53
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  FEMALE                5                 22
  MALE                  8                 53
D65V4, continuous

Clustering(66) Variable = 18q loss mutation analysis
D66V1, survival
                    sevent
clus2                 0  1
  18Q LOSS MUTATED   19  3
  18Q LOSS WILD-TYPE 39 23
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                22                 62 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                 3                 23 
$`18Q LOSS MUTATED`
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20W TCGA-CF-A1HS TCGA-CU-A0YR TCGA-DK-A1A7 
       19.00        26.10         8.35         0.43         7.20         8.98 
TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK 
        8.91       100.47         1.81        10.59        75.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-E5-A2PC TCGA-FD-A3B4 TCGA-FD-A3NA 
        3.98         7.82        10.49        36.43         8.32        32.02 
TCGA-GD-A3OS TCGA-GV-A3JW TCGA-GV-A3JX TCGA-H4-A2HQ 
        5.82         5.26         6.15         6.71 

$`18Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.85        19.46         5.06        14.89         8.61 
TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ 
        5.06         8.25         5.88         3.65         4.64         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO 
        1.94         2.01         0.46         0.69        12.30         4.90 
TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AC 
        5.46         2.53         2.14        31.40         7.04       118.88 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I2 TCGA-DK-A3IS TCGA-DK-A3IT 
        7.17         5.85         6.64         7.76        37.84         5.52 
TCGA-DK-A3IV TCGA-FD-A3B3 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        9.67         8.81         8.94         6.87         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK 
        8.94         7.96         2.33        61.94        26.50         5.65 
TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 
       26.93        32.78        17.26         7.04        20.12         2.24 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GV-A3JV TCGA-GV-A3JZ TCGA-GV-A3QH 
        7.69         2.10         3.12         4.37         5.69         7.79 
TCGA-GV-A3QI TCGA-H4-A2HO 
        4.11         1.51 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.43               0.46 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            100.47             118.88 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             8.335              7.040 
[1] "0.4 - 100.5 (8.3)" "0.5 - 118.9 (7.0)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
[1] "hr=" "3.6"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     10   12
  18Q LOSS WILD-TYPE   17   49
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  FEMALE               10                 17
  MALE                 12                 49
D66V4, continuous

Clustering(67) Variable = 19p loss mutation analysis
D67V1, survival
                    sevent
clus2                 0  1
  19P LOSS MUTATED    2  2
  19P LOSS WILD-TYPE 56 24
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 4                 80 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 2                 24 
$`19P LOSS MUTATED`
TCGA-BT-A3PH TCGA-CU-A0YN TCGA-E5-A2PC TCGA-H4-A2HQ 
        4.64        12.30        36.43         6.71 

$`19P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        3.65         8.98         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 
        0.69         4.90         7.20         5.46         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD 
       31.40         8.98         7.04         8.91       118.88       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
        7.17         5.85         6.64         1.81        10.59         7.76 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS 
       75.32         2.20         3.98         7.82        10.49        37.84 
TCGA-DK-A3IT TCGA-DK-A3IV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
        5.52         9.67         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE 
        4.01        11.05         8.94         7.96        32.02         2.33 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
       61.94        26.50         5.65        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        7.04        20.12         2.24         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH 
        5.82         4.37         5.26         6.15         5.69         7.79 
TCGA-GV-A3QI TCGA-H4-A2HO 
        4.11         1.51 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              4.64               0.43 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             36.43             118.88 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             9.505              7.265 
[1] "4.6 - 36.4 (9.5)"  "0.4 - 118.9 (7.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
[1] "hr=" "1.2"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      2    2
  19P LOSS WILD-TYPE   25   59
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  FEMALE                2                 25
  MALE                  2                 59
D67V4, continuous
[1] "Remove cluster labels:" "19P LOSS MUTATED"      
clus
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 1                 22 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CF-A3MG 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CF-A3MH         TCGA-DK-A2HX         TCGA-DK-A3IV 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3QI 
"19P LOSS WILD-TYPE" 

Clustering(68) Variable = 19q loss mutation analysis
D68V1, survival
                    sevent
clus2                 0  1
  19Q LOSS MUTATED    1  2
  19Q LOSS WILD-TYPE 57 24
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 3                 81 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 2                 24 
$`19Q LOSS MUTATED`
TCGA-BT-A3PH TCGA-CU-A0YN TCGA-E5-A2PC 
        4.64        12.30        36.43 

$`19Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89         8.61         5.06         8.35         8.25         5.88 
TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        3.65         8.98         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 
        0.69         4.90         7.20         5.46         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD 
       31.40         8.98         7.04         8.91       118.88       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
        7.17         5.85         6.64         1.81        10.59         7.76 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS 
       75.32         2.20         3.98         7.82        10.49        37.84 
TCGA-DK-A3IT TCGA-DK-A3IV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
        5.52         9.67         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE 
        4.01        11.05         8.94         7.96        32.02         2.33 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
       61.94        26.50         5.65        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        7.04        20.12         2.24         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH 
        5.82         4.37         5.26         6.15         5.69         7.79 
TCGA-GV-A3QI TCGA-H4-A2HO TCGA-H4-A2HQ 
        4.11         1.51         6.71 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              4.64               0.43 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             36.43             118.88 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              12.3                7.2 
[1] "4.6 - 36.4 (12.3)" "0.4 - 118.9 (7.2)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      1    2
  19Q LOSS WILD-TYPE   26   59
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  FEMALE                1                 26
  MALE                  2                 59
D68V4, continuous
[1] "Remove cluster labels:" "19Q LOSS MUTATED"      
clus
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 1                 22 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CF-A3MG 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CF-A3MH         TCGA-DK-A2HX         TCGA-DK-A3IV 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI 
"19Q LOSS WILD-TYPE" 

Clustering(69) Variable = 20p loss mutation analysis
D69V1, survival
                    sevent
clus2                 0  1
  20P LOSS MUTATED    2  1
  20P LOSS WILD-TYPE 56 25
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 3                 81 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 1                 25 
$`20P LOSS MUTATED`
TCGA-BT-A20P TCGA-DK-A1A3 TCGA-DK-A3IM 
       17.85         2.53         7.82 

$`20P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       19.00        26.10        12.16        19.46         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD 
        8.61         5.06         8.35         8.25         5.88         3.65 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        4.64         8.98         1.94         2.01         0.46         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A5 
        0.69        12.30         4.90         7.20         5.46         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD 
       31.40         8.98         7.04         8.91       118.88       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
        7.17         5.85         6.64         1.81        10.59         7.76 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
       75.32         2.20         3.98        10.49        37.84         5.52 
TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
        9.67        36.43         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE 
        4.01        11.05         8.94         7.96        32.02         2.33 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
       61.94        26.50         5.65        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        7.04        20.12         2.24         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH 
        5.82         4.37         5.26         6.15         5.69         7.79 
TCGA-GV-A3QI TCGA-H4-A2HO TCGA-H4-A2HQ 
        4.11         1.51         6.71 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              2.53               0.43 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             17.85             118.88 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              7.82               7.20 
[1] "2.5 - 17.9 (7.8)"  "0.4 - 118.9 (7.2)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      1    2
  20P LOSS WILD-TYPE   26   59
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  FEMALE                1                 26
  MALE                  2                 59
D69V4, continuous

Clustering(70) Variable = 21q loss mutation analysis
D70V1, survival
                    sevent
clus2                 0  1
  21Q LOSS MUTATED    7  2
  21Q LOSS WILD-TYPE 51 24
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                 9                 75 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                 2                 24 
$`21Q LOSS MUTATED`
TCGA-BT-A20V TCGA-BT-A20X TCGA-CF-A1HR TCGA-DK-A3IT TCGA-E5-A2PC TCGA-G2-A2EF 
        5.06         8.25         0.46         5.52        36.43        61.94 
TCGA-G2-A2EJ TCGA-GV-A3JV TCGA-GV-A3QI 
       26.50         4.37         4.11 

$`21Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.00        26.10        12.16        17.85        19.46         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH 
       14.89         8.61         8.35         5.88         3.65         4.64 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN 
        8.98         1.94         2.01         0.43         0.69        12.30 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 
        4.90         7.20         5.46         2.53         2.14        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE 
        8.98         7.04         8.91       118.88       100.47         7.17 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 
        5.85         6.64         1.81        10.59         7.76        75.32 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IV 
        2.20         3.98         7.82        10.49        37.84         9.67 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        8.81         8.32         8.94         6.87         4.01        11.05 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EK TCGA-G2-A2EL 
        8.94         7.96        32.02         2.33         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A2C5 
       32.78        17.26         7.04        20.12         2.24         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ 
        2.10         3.12         5.82         5.26         6.15         5.69 
TCGA-GV-A3QH TCGA-H4-A2HO TCGA-H4-A2HQ 
        7.79         1.51         6.71 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              0.46               0.43 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             61.94             118.88 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              5.52               7.33 
[1] "0.5 - 61.9 (5.5)"  "0.4 - 118.9 (7.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      3    6
  21Q LOSS WILD-TYPE   24   55
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  FEMALE                3                 24
  MALE                  6                 55
D70V4, continuous

Clustering(71) Variable = 22q loss mutation analysis
D71V1, survival
                    sevent
clus2                 0  1
  22Q LOSS MUTATED   10  7
  22Q LOSS WILD-TYPE 48 19
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                17                 67 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 7                 19 
$`22Q LOSS MUTATED`
TCGA-BT-A20J TCGA-BT-A20R TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CU-A0YN TCGA-CU-A3KJ 
       19.00         5.06         8.98         1.94        12.30         5.46 
TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A3IQ TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B4 
        1.81         7.76        10.49         9.67        36.43         8.32 
TCGA-FD-A3B6 TCGA-FD-A3N5 TCGA-G2-A3IE TCGA-GV-A3JX TCGA-H4-A2HQ 
        6.87         8.94        20.12         6.15         6.71 

$`22Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       12.79         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U 
       26.10        12.16        17.85        19.46        14.89         8.61 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH 
        5.06         8.35         8.25         5.88         3.65         4.64 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR 
        2.01         0.46         0.43         0.69         4.90         7.20 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        2.53         2.14        31.40         8.98         7.04         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 
      118.88       100.47         7.17         5.85         6.64        10.59 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IS TCGA-DK-A3IT 
       75.32         2.20         3.98         7.82        37.84         5.52 
TCGA-FD-A3B3 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA 
        8.81         8.94         4.01        11.05         7.96        32.02 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        2.33        61.94        26.50         5.65        26.93        32.78 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
       17.26         7.04         2.24         7.69         2.10         3.12 
TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI 
        5.82         4.37         5.26         5.69         7.79         4.11 
TCGA-H4-A2HO 
        1.51 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              1.81               0.43 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
             36.43             118.88 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              8.32               7.17 
[1] "1.8 - 36.4 (8.3)"  "0.4 - 118.9 (7.2)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BT-A0S7         TCGA-BT-A0YX 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20J         TCGA-BT-A20N         TCGA-BT-A20O 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20P         TCGA-BT-A20Q         TCGA-BT-A20R 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BT-A20T         TCGA-BT-A20U         TCGA-BT-A20V 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20W         TCGA-BT-A20X         TCGA-BT-A2LA 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A2LD         TCGA-BT-A3PH         TCGA-C4-A0EZ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-C4-A0F0         TCGA-C4-A0F6         TCGA-CF-A1HR 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CU-A0YN 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CU-A0YO         TCGA-CU-A0YR         TCGA-CU-A3KJ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DK-A1A3         TCGA-DK-A1A5         TCGA-DK-A1A6 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1A7         TCGA-DK-A1AA         TCGA-DK-A1AB 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A1AD         TCGA-DK-A1AE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1AF         TCGA-DK-A1AG         TCGA-DK-A2HX 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DK-A2I1         TCGA-DK-A2I2         TCGA-DK-A2I6 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IQ         TCGA-DK-A3IS         TCGA-DK-A3IT 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IV         TCGA-E5-A2PC         TCGA-FD-A3B3 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A3B4         TCGA-FD-A3B5         TCGA-FD-A3B6 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-FD-A3B7         TCGA-FD-A3B8         TCGA-FD-A3N5 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-FD-A3N6         TCGA-FD-A3NA         TCGA-FT-A3EE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-GC-A3I6 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-GD-A2C5         TCGA-GD-A3OP         TCGA-GD-A3OQ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GV-A3JV         TCGA-GV-A3JW 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QH 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A3QI         TCGA-H4-A2HO         TCGA-H4-A2HQ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
[1] "hr=" "1.4"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      7   10
  22Q LOSS WILD-TYPE   20   51
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  FEMALE                7                 20
  MALE                 10                 51
D71V4, continuous
                         V1.D                            V2 
              "Time to Death"                         "AGE" 
                           V3                            V4 
                     "GENDER" "KARNOFSKY.PERFORMANCE.SCORE" 
> q(save="no")
