# Created: Fri Nov 09 21:24:19 EST 2012 by cgaadm_deadline
# Job: 226788    server:  http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/
# Module: GDAC_MutSig_Report urn:lsid:broadinstitute.org:cancer.genome.analysis:00413:36
# Parameters: 
#    bar_plot = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BLCA/2016707/0.MutSigRun.Finished/BLCA.bargraphs.png
#    breakdown_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BLCA/2016707/0.MutSigRun.Finished/BLCA.mutation_breakdown.txt
#    categories_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BLCA/2016707/0.MutSigRun.Finished/BLCA.mutation_rates.txt
#    coverage.png = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BLCA/2016707/0.MutSigRun.Finished/BLCA.covplot.png
#    sig_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BLCA/2016707/0.MutSigRun.Finished/BLCA.sig_genes.txt
#    cosmic_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BLCA/2016707/0.MutSigRun.Finished/BLCA.cosmic_sig_genes.txt
#    cosmic_table2 = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BLCA/2016707/0.MutSigRun.Finished/BLCA.cosmic_sig_genes2.txt
#    cosmic_muts_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BLCA/2016707/0.MutSigRun.Finished/BLCA.cosmic_mutations.txt
#    cluster_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BLCA/2016707/0.MutSigRun.Finished/BLCA.clustered_muts.txt
#    geneset_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BLCA/2016707/0.MutSigRun.Finished/BLCA.sig_genesets.txt
#    genset_table2 = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BLCA/2016707/0.MutSigRun.Finished/BLCA.sig_genesets_2.txt
#    patients_c_and_r = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BLCA/2016707/0.MutSigRun.Finished/BLCA.patients.counts_and_rates.txt
#    ind_set = BLCA
#    mutsig_version = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BLCA/2016707/0.MutSigRun.Finished/BLCA.MutSig_version.txt
#    coMut_plot_png = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/CoMut/BLCA/2019132/0.CoMut.Finished/BLCA_coMut.png
#    coMut_plot_pdf = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/CoMut/BLCA/2019132/0.CoMut.Finished/BLCA_coMut.pdf
#    stick_figures_path = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GenerateStickFigures/BLCA/2019147/0.GenerateStickFigures.Finished/generatedStickFigurePaths.txt
#    maf_path = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BLCA/2016707/0.MutSigRun.Finished/BLCA.final_analysis_set.maf
#    mut_pre_rep_path = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/BLCA/1909953/0.MutSigPreprocess.Finished/BLCA.mutation_preprocessing_report.txt
#    mut_filt_rep_path = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/BLCA/2016707/0.MutSigRun.Finished/BLCA.mutation_filtering_report.txt
