Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
ClinicalAnalysisAllGenes_new1.data.file	COAD.medianexp.txt	gdac.broadinstitute.org_COAD.mRNA_Preprocess_Median.Level_4.2012102400.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	COAD.clin.merged.picked.clindata.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	COAD.medianexp.txt	gdac.broadinstitute.org_COAD.mRNA_Preprocess_Median.Level_4.2012102400.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	table8.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	COAD.medianexp.txt	gdac.broadinstitute.org_COAD.mRNA_Preprocess_Median.Level_4.2012102400.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	table1.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	COAD.medianexp.txt	gdac.broadinstitute.org_COAD.mRNA_Preprocess_Median.Level_4.2012102400.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	table12.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	COAD.medianexp.txt	gdac.broadinstitute.org_COAD.mRNA_Preprocess_Median.Level_4.2012102400.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	table6.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	COAD.medianexp.txt	gdac.broadinstitute.org_COAD.mRNA_Preprocess_Median.Level_4.2012102400.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	table15.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	COAD.medianexp.txt	gdac.broadinstitute.org_COAD.mRNA_Preprocess_Median.Level_4.2012102400.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	table4.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	COAD.medianexp.txt	gdac.broadinstitute.org_COAD.mRNA_Preprocess_Median.Level_4.2012102400.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	supp.table1.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	COAD.medianexp.txt	gdac.broadinstitute.org_COAD.mRNA_Preprocess_Median.Level_4.2012102400.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	V2ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	COAD.medianexp.txt	gdac.broadinstitute.org_COAD.mRNA_Preprocess_Median.Level_4.2012102400.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	V7ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	COAD.medianexp.txt	gdac.broadinstitute.org_COAD.mRNA_Preprocess_Median.Level_4.2012102400.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	V3ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	COAD.medianexp.txt	gdac.broadinstitute.org_COAD.mRNA_Preprocess_Median.Level_4.2012102400.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	V9ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	COAD.medianexp.txt	gdac.broadinstitute.org_COAD.mRNA_Preprocess_Median.Level_4.2012102400.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	V4ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	COAD.medianexp.txt	gdac.broadinstitute.org_COAD.mRNA_Preprocess_Median.Level_4.2012102400.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.data.file	COAD.medianexp.txt	gdac.broadinstitute.org_COAD.mRNA_Preprocess_Median.Level_4.2012102400.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	COAD.clin.merged.picked.txt	gdac.broadinstitute.org_COAD.Clinical_Pick_Tier1.Level_4.2012102400.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	COAD.clin.merged.picked.clindata.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	COAD.clin.merged.picked.txt	gdac.broadinstitute.org_COAD.Clinical_Pick_Tier1.Level_4.2012102400.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	table8.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	COAD.clin.merged.picked.txt	gdac.broadinstitute.org_COAD.Clinical_Pick_Tier1.Level_4.2012102400.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	table1.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	COAD.clin.merged.picked.txt	gdac.broadinstitute.org_COAD.Clinical_Pick_Tier1.Level_4.2012102400.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	table12.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	COAD.clin.merged.picked.txt	gdac.broadinstitute.org_COAD.Clinical_Pick_Tier1.Level_4.2012102400.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	table6.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	COAD.clin.merged.picked.txt	gdac.broadinstitute.org_COAD.Clinical_Pick_Tier1.Level_4.2012102400.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	table15.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	COAD.clin.merged.picked.txt	gdac.broadinstitute.org_COAD.Clinical_Pick_Tier1.Level_4.2012102400.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	table4.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	COAD.clin.merged.picked.txt	gdac.broadinstitute.org_COAD.Clinical_Pick_Tier1.Level_4.2012102400.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	supp.table1.txt	clinical_Correlation-Clinical_Expression	Level_4	text	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	COAD.clin.merged.picked.txt	gdac.broadinstitute.org_COAD.Clinical_Pick_Tier1.Level_4.2012102400.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	V2ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	COAD.clin.merged.picked.txt	gdac.broadinstitute.org_COAD.Clinical_Pick_Tier1.Level_4.2012102400.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	V7ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	COAD.clin.merged.picked.txt	gdac.broadinstitute.org_COAD.Clinical_Pick_Tier1.Level_4.2012102400.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	V3ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	COAD.clin.merged.picked.txt	gdac.broadinstitute.org_COAD.Clinical_Pick_Tier1.Level_4.2012102400.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	V9ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	COAD.clin.merged.picked.txt	gdac.broadinstitute.org_COAD.Clinical_Pick_Tier1.Level_4.2012102400.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	V4ex.png	clinical_Correlation-Clinical_Expression	Level_4	png	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	COAD.clin.merged.picked.txt	gdac.broadinstitute.org_COAD.Clinical_Pick_Tier1.Level_4.2012102400.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
ClinicalAnalysisAllGenes_new1.clinical.file	COAD.clin.merged.picked.txt	gdac.broadinstitute.org_COAD.Clinical_Pick_Tier1.Level_4.2012102400.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00337:26	Correlate_Clinical_vs_mRNA_2012102400	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_COAD.Correlate_Clinical_vs_mRNA.Level_4.2012102400.0.0	yes
