Making sub-directories
Evidence:
    outputFile	clusterFiles/COAD_exp.tab
    suffix	COAD_exp.tab
    attachment	mRNA
    spec	file:dataFiles/COAD_exp.tab
running:
    cat dataFiles/COAD_exp.tab | /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/quantileTransform.py /dev/stdin > COAD_exp.tab
 ... done
155 samples, fraction of each matrix: 1.0
17814 genes, fraction of each matrix: 1.0
Writing config file for EM
Writing config file for final run
Copying pathway files
running:
    cp pathwayFiles/*_pathway.tab clusterFiles
 ... done
writing EM jobs list
writing jobs list
