		Clinical Features	Time to Death		AGE		GENDER		KARNOFSKY.PERFORMANCE.SCORE		PATHOLOGY.T		PATHOLOGY.N		PATHOLOGICSPREAD(M)		TUMOR.STAGE		NEOADJUVANT.THERAPY	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	5 (1%)	488	0.49798	1	0.94201	1	1	1	NA	NA	0.40487	1	0.14126	1	1	1	0.36831	1	1	1
1q gain	32 (6%)	461	0.96004	1	0.18548	1	0.56486	1	0.11501	1	0.06604	1	0.33018	1	0.8026	1	0.05276	1	0.28607	1
2p gain	48 (10%)	445	0.57963	1	0.14013	1	0.20118	1	0.56341	1	0.75798	1	1	1	0.20595	1	0.30243	1	1	1
2q gain	49 (10%)	444	0.41117	1	0.20527	1	0.038711	1	0.15861	1	0.8713	1	0.7024	1	0.20823	1	0.38295	1	1	1
3p gain	7 (1%)	486	0.95012	1	0.4288	1	0.24272	1	NA	NA	0.50782	1	0.26353	1	0.29484	1	0.11954	1	0.06928	1
3q gain	27 (5%)	466	0.5751	1	0.94791	1	1	1	0.026091	1	0.24883	1	0.35864	1	0.16368	1	0.31169	1	0.026101	1
4p gain	8 (2%)	485	0.23489	1	0.87534	1	0.71993	1	NA	NA	0.32672	1	0.36922	1	0.61551	1	0.088481	1	1	1
4q gain	8 (2%)	485	0.65336	1	0.38931	1	1	1	NA	NA	0.56066	1	0.36922	1	0.61551	1	0.22346	1	1	1
5p gain	141 (29%)	352	0.12355	1	0.00024603	0.149	0.11616	1	0.56341	1	0.21124	1	1	1	0.78268	1	0.28809	1	0.62715	1
5q gain	156 (32%)	337	0.29654	1	0.00037002	0.224	0.15565	1	0.48237	1	0.20956	1	0.61484	1	0.59429	1	0.39951	1	0.6537	1
6p gain	6 (1%)	487	0.22436	1	0.23572	1	1	1	NA	NA	0.6624	1	1	1	1	1	0.75557	1	1	1
6q gain	5 (1%)	488	0.18317	1	0.44223	1	0.66306	1	NA	NA	0.40487	1	1	1	0.56865	1	0.36831	1	1	1
7p gain	127 (26%)	366	0.8624	1	0.31353	1	0.084607	1	0.89259	1	0.26102	1	0.59883	1	0.04511	1	0.17942	1	0.60721	1
7q gain	129 (26%)	364	0.51698	1	0.38033	1	0.067343	1	0.69945	1	0.11301	1	1	1	0.0066087	1	0.045454	1	0.11511	1
8p gain	14 (3%)	479	0.57438	1	0.76141	1	0.041662	1	0.75713	1	0.0063659	1	1	1	0.46191	1	0.0028735	1	1	1
8q gain	34 (7%)	459	0.85619	1	0.42671	1	0.1923	1	0.47135	1	0.0056482	1	0.65696	1	1	1	0.0026424	1	1	1
9p gain	8 (2%)	485	0.12283	1	0.037664	1	0.023229	1	NA	NA	0.6136	1	1	1	0.61551	1	0.37833	1	1	1
9q gain	8 (2%)	485	0.76913	1	0.96995	1	0.45726	1	NA	NA	0.0075826	1	1	1	0.35623	1	0.11086	1	1	1
10p gain	6 (1%)	487	0.72023	1	0.51127	1	0.42241	1	NA	NA	0.32961	1	1	1	0.23276	1	0.28823	1	0.059625	1
10q gain	4 (1%)	489	0.51111	1	0.16903	1	0.12258	1	NA	NA	0.64645	1	1	1	0.48927	1	0.37698	1	0.040075	1
11p gain	17 (3%)	476	0.97426	1	0.79994	1	0.60799	1	0.11501	1	0.021026	1	1	1	0.15964	1	0.019793	1	0.16154	1
11q gain	15 (3%)	478	0.31669	1	0.8113	1	0.40906	1	NA	NA	0.070937	1	1	1	0.71326	1	0.043456	1	0.1437	1
12p gain	78 (16%)	415	0.11106	1	0.115	1	0.3641	1	0.40443	1	0.044788	1	1	1	0.1222	1	0.032476	1	0.1794	1
12q gain	78 (16%)	415	0.14154	1	0.16711	1	0.3641	1	0.40443	1	0.044788	1	0.74841	1	0.1222	1	0.032476	1	0.1794	1
13q gain	14 (3%)	479	0.29108	1	0.85052	1	0.77941	1	NA	NA	0.32136	1	1	1	1	1	0.23981	1	0.0071428	1
14q gain	5 (1%)	488	0.43847	1	0.52373	1	1	1	NA	NA	0.021611	1	1	1	0.56865	1	0.13067	1	1	1
15q gain	14 (3%)	479	0.86786	1	0.93893	1	0.77941	1	NA	NA	0.23126	1	0.46048	1	0.46191	1	0.41538	1	1	1
16p gain	65 (13%)	428	0.61067	1	0.065436	1	0.21202	1	0.39982	1	0.80443	1	0.083657	1	0.71335	1	0.71881	1	0.13153	1
16q gain	58 (12%)	435	0.4869	1	0.086426	1	0.10553	1	0.19078	1	0.6485	1	0.14266	1	1	1	0.71483	1	0.46663	1
17p gain	16 (3%)	477	0.45567	1	0.53316	1	0.79472	1	NA	NA	0.27943	1	0.50128	1	0.14916	1	0.14948	1	0.15266	1
17q gain	22 (4%)	471	0.14327	1	0.53947	1	0.64731	1	0.16133	1	0.32678	1	0.60691	1	0.55339	1	0.439	1	0.20484	1
18p gain	18 (4%)	475	0.088398	1	0.78233	1	0.02232	1	NA	NA	0.96294	1	1	1	0.33262	1	0.5259	1	1	1
18q gain	18 (4%)	475	0.088398	1	0.78233	1	0.02232	1	NA	NA	0.96294	1	1	1	0.33262	1	0.5259	1	1	1
19p gain	25 (5%)	468	0.93474	1	0.70286	1	1	1	0.16133	1	0.52015	1	0.3015	1	0.25101	1	0.22306	1	0.22995	1
19q gain	28 (6%)	465	0.88384	1	0.70925	1	0.68324	1	0.16133	1	0.46877	1	0.35864	1	0.17357	1	0.2299	1	0.027992	1
20p gain	66 (13%)	427	0.2735	1	0.26833	1	0.01265	1	0.3153	1	0.0051915	1	0.48534	1	0.042867	1	0.020246	1	0.51411	1
20q gain	68 (14%)	425	0.42811	1	0.22011	1	0.019542	1	0.3153	1	0.0086017	1	0.48534	1	0.10598	1	0.031703	1	0.52544	1
21q gain	33 (7%)	460	0.33915	1	0.32397	1	0.85109	1	0.16133	1	0.50793	1	1	1	1	1	0.89361	1	1	1
22q gain	25 (5%)	468	0.96356	1	0.82997	1	0.52569	1	NA	NA	0.19604	1	1	1	0.25101	1	0.43874	1	1	1
Xq gain	11 (2%)	482	0.44015	1	0.72309	1	0.054603	1	NA	NA	0.87051	1	1	1	0.073286	1	0.05034	1	0.10711	1
1p loss	32 (6%)	461	0.87681	1	0.098431	1	0.56486	1	0.11501	1	0.01446	1	0.60691	1	0.45037	1	0.069585	1	1	1
1q loss	21 (4%)	472	0.77889	1	0.5985	1	0.64432	1	NA	NA	0.093849	1	1	1	0.75588	1	0.26288	1	1	1
2p loss	10 (2%)	483	0.47097	1	0.93183	1	0.50562	1	NA	NA	0.091512	1	1	1	1	1	0.48138	1	1	1
2q loss	11 (2%)	482	0.8558	1	0.98287	1	0.34412	1	NA	NA	0.19256	1	1	1	1	1	0.7262	1	1	1
3p loss	304 (62%)	189	0.55558	1	0.35545	1	0.079692	1	0.90604	1	0.016765	1	0.46186	1	0.014523	1	0.018013	1	0.37634	1
3q loss	73 (15%)	420	0.94793	1	0.0175	1	0.00081515	0.492	0.57273	1	0.3186	1	0.7024	1	0.72889	1	0.60976	1	0.55283	1
4p loss	35 (7%)	458	0.060171	1	0.55766	1	0.85404	1	0.017614	1	0.023648	1	1	1	0.80756	1	0.11781	1	0.3091	1
4q loss	28 (6%)	465	0.018274	1	0.99174	1	0.84064	1	0.026091	1	0.003292	1	0.60691	1	0.17357	1	0.024973	1	0.25442	1
6p loss	58 (12%)	435	0.23509	1	0.18705	1	0.0030257	1	0.49947	1	0.75687	1	0.18917	1	0.43912	1	0.79672	1	0.46663	1
6q loss	82 (17%)	411	0.54764	1	0.71886	1	0.12692	1	0.85135	1	0.96928	1	0.05921	1	0.86815	1	0.76711	1	1	1
8p loss	94 (19%)	399	0.51247	1	0.094902	1	0.28111	1	0.081656	1	0.60258	1	0.32159	1	0.42915	1	0.5145	1	1	1
8q loss	37 (8%)	456	0.27901	1	0.91478	1	0.046868	1	0.004195	1	1	1	0.60756	1	0.24369	1	0.85795	1	1	1
9p loss	87 (18%)	406	0.011137	1	0.062402	1	0.01281	1	0.026091	1	0.18504	1	0.74545	1	0.020857	1	0.090156	1	0.21477	1
9q loss	92 (19%)	401	0.005417	1	0.033983	1	0.015517	1	0.047262	1	0.016512	1	1	1	0.0034978	1	0.0043358	1	0.23503	1
10p loss	32 (6%)	461	0.50653	1	0.49029	1	0.56486	1	0.026091	1	0.01411	1	1	1	0.8026	1	0.86605	1	1	1
10q loss	48 (10%)	445	0.74247	1	0.25822	1	0.26785	1	0.053515	1	0.0083933	1	0.62112	1	0.67671	1	0.61776	1	1	1
11p loss	5 (1%)	488	3.9035e-05	0.0237	0.94277	1	0.66306	1	NA	NA	0.61756	1	0.14126	1	0.56865	1	0.9082	1	1	1
11q loss	7 (1%)	486	0.14773	1	0.63821	1	0.43045	1	NA	NA	0.7988	1	0.26353	1	1	1	1	1	1	1
13q loss	31 (6%)	462	0.001203	0.724	0.051251	1	0.33368	1	0.004195	1	0.0013338	0.802	1	1	0.039444	1	0.011778	1	1	1
14q loss	158 (32%)	335	0.25126	1	0.20285	1	0.26522	1	0.50834	1	0.019394	1	0.068231	1	0.14244	1	0.023493	1	0.038444	1
15q loss	12 (2%)	481	0.2575	1	0.1304	1	1	1	NA	NA	0.28166	1	0.41653	1	0.40828	1	0.26576	1	1	1
16q loss	5 (1%)	488	0.086407	1	0.069637	1	0.66306	1	NA	NA	0.0063547	1	1	1	0.56865	1	0.072587	1	1	1
17p loss	25 (5%)	468	0.038651	1	0.65775	1	0.28783	1	0.047262	1	0.13096	1	1	1	0.039647	1	0.22306	1	0.22995	1
17q loss	12 (2%)	481	0.6968	1	0.83071	1	0.23183	1	NA	NA	0.053374	1	1	1	1	1	0.46978	1	0.11637	1
18p loss	46 (9%)	447	0.31685	1	0.10568	1	0.62627	1	0.51805	1	0.10163	1	0.69061	1	0.20368	1	0.36	1	0.38851	1
18q loss	48 (10%)	445	0.69948	1	0.21986	1	0.26785	1	0.51805	1	0.43197	1	0.7024	1	0.29221	1	0.69196	1	0.40213	1
19p loss	4 (1%)	489	0.00051417	0.311	0.89035	1	0.61232	1	NA	NA	0.013973	1	1	1	1	1	0.068131	1	1	1
20p loss	6 (1%)	487	0.75126	1	0.96682	1	1	1	NA	NA	0.88112	1	1	1	1	1	0.93115	1	1	1
21q loss	32 (6%)	461	0.77876	1	0.9441	1	1	1	NA	NA	0.006079	1	0.35864	1	0.45037	1	0.18144	1	1	1
22q loss	11 (2%)	482	0.22842	1	0.044645	1	0.34412	1	NA	NA	0.27244	1	1	1	1	1	0.19091	1	1	1
Xq loss	7 (1%)	486	0.50695	1	0.74909	1	0.10184	1	NA	NA	0.63034	1	1	1	0.60218	1	0.57443	1	1	1
