Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	patient	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	newbase	is_coding	is_flank	is_indel	is_ins	is_del	is_missense	is_nonsense	is_splice	is_silent	context_orig	context65	categ	categ_ignoring_null_categ	gene_idx	pat_idx	n_cos
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4390-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	234	18	2	2	8338	7	14604
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4395-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	234	18	2	2	8338	8	14604
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4427-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	234	18	2	2	8338	24	14604
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4433-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	234	18	2	2	8338	27	14604
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z010-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	234	18	2	2	8338	43	14604
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z020-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	234	18	2	2	8338	52	14604
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-17-Z033-01A-01W-0746-08	TCGA-17-Z033-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z033-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	234	18	2	2	8338	63	14604
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	G	G	rs121913529		TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z037-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	G	G	G	1	0	0	0	0	1	0	0	0	234	18	3	3	8338	66	14604
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z050-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	234	18	2	2	8338	79	14604
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	T	T	rs121913529		TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z060-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	234	18	3	3	8338	89	14604
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-38-4626-01A-01D-1553-08	TCGA-38-4626-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-38-4626-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	234	18	2	2	8338	97	14604
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-6145-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	C	A	A	1	0	0	0	0	1	0	0	0	234	18	2	2	8338	122	14604
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-44-6146-01A-11D-1753-08	TCGA-44-6146-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-6146-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	C	A	A	1	0	0	0	0	1	0	0	0	234	18	2	2	8338	123	14604
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	T	T	rs121913529		TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-6776-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	C	T	T	1	0	0	0	0	1	0	0	0	234	18	3	3	8338	128	14604
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	T	T	rs121913529		TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-4510-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	234	18	3	3	8338	141	14604
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	G	G	rs121913529		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5941-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	G	G	G	1	0	0	0	0	1	0	0	0	234	18	3	3	8338	164	14604
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-55-6642-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	234	18	2	2	8338	181	14604
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-67-3773-01A-01D-1040-01	TCGA-67-3773-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-67-3773-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	C	A	A	1	0	0	0	0	1	0	0	0	234	18	2	2	8338	196	14604
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	G	G	rs121913529		TCGA-67-4679-01B-01D-1753-08	TCGA-67-4679-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-67-4679-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	G	G	G	1	0	0	0	0	1	0	0	0	234	18	3	3	8338	198	14604
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-73-4659-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	234	18	2	2	8338	204	14604
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	G	G	rs121913529		TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-73-4677-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	G	G	G	1	0	0	0	0	1	0	0	0	234	18	3	3	8338	211	14604
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-91-6828-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	C	A	A	1	0	0	0	0	1	0	0	0	234	18	2	2	8338	225	14604
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	G	G	rs121913529		TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-91-6836-TP	Broad	Missense_Mutation	SNP	25398284	25398284	KRAS	12	C	G	G	G	1	0	0	0	0	1	0	0	0	234	18	3	3	8338	229	14604
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-05-4244-01A-01D-1105-08	TCGA-05-4244-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4244-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	1	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4249-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	2	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-05-4250-01A-01D-1105-08	TCGA-05-4250-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4250-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	3	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-05-4403-01A-01D-1265-08	TCGA-05-4403-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4403-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	13	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4405-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	14	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4415-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	16	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4417-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	17	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-05-4418-01A-01D-1265-08	TCGA-05-4418-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4418-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	18	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4430-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	25	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z008-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	41	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z016-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	49	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z022-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	54	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z036-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	65	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z042-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	71	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-35-3615-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	C	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	92	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-44-2668-01A-01D-0969-08	TCGA-44-2668-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-2668-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	C	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	113	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-6144-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	C	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	121	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-6777-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	C	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	129	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-4505-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	138	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-6744-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	146	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-50-5051-01A-21D-1855-08	TCGA-50-5051-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5051-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	152	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-50-5932-01A-11D-1753-08	TCGA-50-5932-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5932-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	159	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5933-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	160	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-50-5936-01A-11D-1625-08	TCGA-50-5936-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5936-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	162	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-55-1595-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	177	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-64-1677-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	184	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-64-5774-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	187	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-64-5778-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	189	14364
KRAS	3845	broad.mit.edu	37	12	25398284	25398285	+	Missense_Mutation	DNP	CC	AA	AA	rs121913529		TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-67-3774-TP	Broad	Missense	DNP	25398284	25398285	KRAS	12	CC	CC	AA	AA	1	0	0	0	0	1	0	0	0	234	18	2	2	8338	197	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-73-4662-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	205	14364
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-75-5126-TP	Broad	Missense_Mutation	SNP	25398285	25398285	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	214	14364
KRAS	3845	broad.mit.edu	37	12	25398282	25398282	+	Missense_Mutation	SNP	C	A	A	rs121913535		TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z017-TP	Broad	Missense_Mutation	SNP	25398282	25398282	KRAS	12	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	8338	50	12959
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2666-01A-01D-1489-08	TCGA-44-2666-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-2666-TP	Broad	Missense_Mutation	SNP	140453136	140453136	BRAF	7	A	A	T	T	1	0	0	0	0	1	0	0	0	78	6	4	4	1481	112	10508
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5942-01A-21D-1753-08	TCGA-50-5942-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5942-TP	Broad	Missense_Mutation	SNP	140453136	140453136	BRAF	7	A	T	T	T	1	0	0	0	0	1	0	0	0	78	6	4	4	1481	165	10508
KRAS	3845	broad.mit.edu	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	T	T	rs112445441		TCGA-75-6206-01A-11D-1753-08	TCGA-75-6206-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-75-6206-TP	Broad	Missense_Mutation	SNP	25398281	25398281	KRAS	12	C	T	T	T	1	0	0	0	0	1	0	0	0	338	26	3	3	8338	219	2258
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	A	A	rs11554290		TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z018-TP	Broad	Missense_Mutation	SNP	115256529	115256529	NRAS	1	T	A	A	A	1	0	0	0	0	1	0	0	0	819	63	4	4	10522	51	1298
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	A	A	rs11554290		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z046-TP	Broad	Missense_Mutation	SNP	115256529	115256529	NRAS	1	T	A	A	A	1	0	0	0	0	1	0	0	0	819	63	4	4	10522	75	1298
NRAS	4893	broad.mit.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	T	T	rs121913254		TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-35-4123-TP	Broad	Missense_Mutation	SNP	115256530	115256530	NRAS	1	G	T	T	T	1	0	0	0	0	1	0	0	0	624	48	2	2	10522	94	1298
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	A	A	rs11554290		TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-38-4632-TP	Broad	Missense_Mutation	SNP	115256529	115256529	NRAS	1	T	A	A	A	1	0	0	0	0	1	0	0	0	819	63	4	4	10522	103	1298
TP53	7157	broad.mit.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	G	G	rs11540652		TCGA-73-4666-01A-01D-1265-08	TCGA-73-4666-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-73-4666-TP	Broad	Missense_Mutation	SNP	7577538	7577538	TP53	17	C	G	G	G	1	0	0	0	0	1	0	0	0	299	23	3	3	16226	206	1009
TP53	7157	broad.mit.edu	37	17	7577537	7577537	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4397-TP	Broad	Frame_Shift_Del	DEL	7577537	7577537	TP53	17	C	-	-	-	1	0	1	0	1	0	0	0	0	379	30	5	5	16226	10	992
EGFR	1956	broad.mit.edu	37	7	55259515	55259515	+	Missense_Mutation	SNP	T	G	G	rs121434568		TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z047-TP	Broad	Missense_Mutation	SNP	55259515	55259515	EGFR	7	T	G	G	G	1	0	0	0	0	1	0	0	0	715	55	4	4	4915	76	980
EGFR	1956	broad.mit.edu	37	7	55259515	55259515	+	Missense_Mutation	SNP	T	G	G	rs121434568		TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-38-4627-TP	Broad	Missense_Mutation	SNP	55259515	55259515	EGFR	7	T	G	G	G	1	0	0	0	0	1	0	0	0	715	55	4	4	4915	98	980
EGFR	1956	broad.mit.edu	37	7	55259515	55259515	+	Missense_Mutation	SNP	T	G	G	rs121434568		TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-4490-TP	Broad	Missense_Mutation	SNP	55259515	55259515	EGFR	7	T	G	G	G	1	0	0	0	0	1	0	0	0	715	55	4	4	4915	135	980
EGFR	1956	broad.mit.edu	37	7	55259515	55259515	+	Missense_Mutation	SNP	T	G	G	rs121434568		TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-4494-TP	Broad	Missense_Mutation	SNP	55259515	55259515	EGFR	7	T	G	G	G	1	0	0	0	0	1	0	0	0	715	55	4	4	4915	136	980
EGFR	1956	broad.mit.edu	37	7	55259515	55259515	+	Missense_Mutation	SNP	T	G	G	rs121434568		TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5944-TP	Broad	Missense_Mutation	SNP	55259515	55259515	EGFR	7	T	G	G	G	1	0	0	0	0	1	0	0	0	715	55	4	4	4915	166	980
EGFR	1956	broad.mit.edu	37	7	55259515	55259515	+	Missense_Mutation	SNP	T	G	G	rs121434568		TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-67-3770-TP	Broad	Missense_Mutation	SNP	55259515	55259515	EGFR	7	T	T	G	G	1	0	0	0	0	1	0	0	0	715	55	4	4	4915	193	980
EGFR	1956	broad.mit.edu	37	7	55259515	55259515	+	Missense_Mutation	SNP	T	G	G	rs121434568		TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-67-3772-TP	Broad	Missense_Mutation	SNP	55259515	55259515	EGFR	7	T	G	G	G	1	0	0	0	0	1	0	0	0	715	55	4	4	4915	195	980
EGFR	1956	broad.mit.edu	37	7	55259515	55259515	+	Missense_Mutation	SNP	T	G	G	rs121434568		TCGA-67-6217-01A-11D-1753-08	TCGA-67-6217-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-67-6217-TP	Broad	Missense_Mutation	SNP	55259515	55259515	EGFR	7	T	G	G	G	1	0	0	0	0	1	0	0	0	715	55	4	4	4915	201	980
EGFR	1956	broad.mit.edu	37	7	55259515	55259515	+	Missense_Mutation	SNP	T	G	G	rs121434568		TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-91-6835-TP	Broad	Missense_Mutation	SNP	55259515	55259515	EGFR	7	T	G	G	G	1	0	0	0	0	1	0	0	0	715	55	4	4	4915	228	980
PIK3CA	5290	broad.mit.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	G	G	rs121913279		TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-5645-TP	Broad	Missense_Mutation	SNP	178952085	178952085	PIK3CA	3	A	A	G	G	1	0	0	0	0	1	0	0	0	104	8	4	4	11786	120	977
TP53	7157	broad.mit.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	A	A	rs28934576	by1000genomes	TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z028-TP	Broad	Missense_Mutation	SNP	7577120	7577120	TP53	17	C	A	A	A	1	0	0	0	0	1	0	0	0	247	19	1	1	16226	59	890
TP53	7157	broad.mit.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	A	A	rs28934576	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-38-4625-TP	Broad	Missense_Mutation	SNP	7577120	7577120	TP53	17	C	A	A	A	1	0	0	0	0	1	0	0	0	247	19	1	1	16226	96	890
TP53	7157	broad.mit.edu	37	17	7577536	7577536	+	Missense_Mutation	SNP	T	C	C	rs67185453		TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z007-TP	Broad	Missense_Mutation	SNP	7577536	7577536	TP53	17	T	C	C	C	1	0	0	0	0	1	0	0	0	700	54	4	4	16226	40	866
TP53	7157	broad.mit.edu	37	17	7577536	7577536	+	Missense_Mutation	SNP	T	C	C	rs67185453		TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-6592-TP	Broad	Missense_Mutation	SNP	7577536	7577536	TP53	17	T	C	C	C	1	0	0	0	0	1	0	0	0	700	54	4	4	16226	170	866
TP53	7157	broad.mit.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	T	T	rs28934578		TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4405-TP	Broad	Missense_Mutation	SNP	7578406	7578406	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	351	27	3	3	16226	14	722
TP53	7157	broad.mit.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	T	T	rs28934578		TCGA-49-4514-01A-21D-1855-08	TCGA-49-4514-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-4514-TP	Broad	Missense_Mutation	SNP	7578406	7578406	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	351	27	3	3	16226	143	722
TP53	7157	broad.mit.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	T	T	rs28934578		TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-6595-TP	Broad	Missense_Mutation	SNP	7578406	7578406	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	351	27	3	3	16226	173	722
CTNNB1	1499	broad.mit.edu	37	3	41266137	41266137	+	Missense_Mutation	SNP	C	T	T	rs121913409		TCGA-05-4425-01A-01D-1753-08	TCGA-05-4425-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4425-TP	Broad	Missense_Mutation	SNP	41266137	41266137	CTNNB1	3	C	T	T	T	1	0	0	0	0	1	0	0	0	416	32	3	3	3972	22	664
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	rs104886003		TCGA-05-4249-01A-01D-1105-08	TCGA-05-4249-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4249-TP	Broad	Missense_Mutation	SNP	178936091	178936091	PIK3CA	3	G	A	A	A	1	0	0	0	0	1	0	0	0	585	45	3	3	11786	2	654
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	rs104886003		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4397-TP	Broad	Missense_Mutation	SNP	178936091	178936091	PIK3CA	3	G	A	A	A	1	0	0	0	0	1	0	0	0	585	45	3	3	11786	10	654
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	rs104886003		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-5643-TP	Broad	Missense_Mutation	SNP	178936091	178936091	PIK3CA	3	G	G	A	A	1	0	0	0	0	1	0	0	0	585	45	3	3	11786	119	654
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	rs104886003		TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-64-1677-TP	Broad	Missense_Mutation	SNP	178936091	178936091	PIK3CA	3	G	A	A	A	1	0	0	0	0	1	0	0	0	585	45	3	3	11786	184	654
CTNNB1	1499	broad.mit.edu	37	3	41266124	41266124	+	Missense_Mutation	SNP	A	G	G	rs121913412		TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4389-TP	Broad	Missense_Mutation	SNP	41266124	41266124	CTNNB1	3	A	G	G	G	1	0	0	0	0	1	0	0	0	182	14	4	4	3972	6	527
TP53	7157	broad.mit.edu	37	17	7577118	7577118	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z056-TP	Broad	Missense_Mutation	SNP	7577118	7577118	TP53	17	C	A	A	A	1	0	0	0	0	1	0	0	0	221	17	2	2	16226	85	527
TP53	7157	broad.mit.edu	37	17	7577123	7577123	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4382-TP	Broad	Missense_Mutation	SNP	7577123	7577123	TP53	17	A	C	C	C	1	0	0	0	0	1	0	0	0	78	6	4	4	16226	4	447
EGFR	1956	broad.mit.edu	37	7	55242466	55242474	+	In_Frame_Del	DEL	GAATTAAGA	-	-	rs121913426		TCGA-75-6212-01A-11D-1753-08	TCGA-75-6212-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-75-6212-TP	Broad	In_Frame_Del	DEL	55242466	55242474	EGFR	7	GAATTAAGA	-	-	-	1	0	1	0	1	0	0	0	0	533	41	5	5	4915	222	408
TP53	7157	broad.mit.edu	37	17	7577548	7577548	+	Missense_Mutation	SNP	C	A	A	rs28934575		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-6774-TP	Broad	Missense_Mutation	SNP	7577548	7577548	TP53	17	C	C	A	A	1	0	0	0	0	1	0	0	0	299	23	1	1	16226	126	399
TP53	7157	broad.mit.edu	37	17	7577095	7577095	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4432-TP	Broad	Missense_Mutation	SNP	7577095	7577095	TP53	17	G	T	T	T	1	0	0	0	0	1	0	0	0	568	44	2	2	16226	26	391
TP53	7157	broad.mit.edu	37	17	7577096	7577096	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4410-TP	Broad	Missense_Mutation	SNP	7577096	7577096	TP53	17	T	A	A	A	1	0	0	0	0	1	0	0	0	754	58	4	4	16226	15	390
CTNNB1	1499	broad.mit.edu	37	3	41266113	41266113	+	Missense_Mutation	SNP	C	T	T	rs121913403		TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4422-TP	Broad	Missense_Mutation	SNP	41266113	41266113	CTNNB1	3	C	T	T	T	1	0	0	0	0	1	0	0	0	416	32	3	3	3972	20	360
CTNNB1	1499	broad.mit.edu	37	3	41266113	41266113	+	Missense_Mutation	SNP	C	T	T	rs121913403		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z032-TP	Broad	Missense_Mutation	SNP	41266113	41266113	CTNNB1	3	C	T	T	T	1	0	0	0	0	1	0	0	0	416	32	3	3	3972	62	360
TP53	7157	broad.mit.edu	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	A	A	rs28934571		TCGA-17-Z053-01A-01W-0747-08	TCGA-17-Z053-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z053-TP	Broad	Missense_Mutation	SNP	7577534	7577534	TP53	17	C	A	A	A	1	0	0	0	0	1	0	0	0	337	26	2	2	16226	82	360
CTNNB1	1499	broad.mit.edu	37	3	41266113	41266113	+	Missense_Mutation	SNP	C	G	G	rs121913403		TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-67-3771-TP	Broad	Missense_Mutation	SNP	41266113	41266113	CTNNB1	3	C	C	G	G	1	0	0	0	0	1	0	0	0	416	32	3	3	3972	194	360
TP53	7157	broad.mit.edu	37	17	7577547	7577547	+	Missense_Mutation	SNP	C	A	A	rs121912656		TCGA-44-6777-01A-11D-1855-08	TCGA-44-6777-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-6777-TP	Broad	Missense_Mutation	SNP	7577547	7577547	TP53	17	C	C	A	A	1	0	0	0	0	1	0	0	0	338	26	2	2	16226	129	359
TP53	7157	broad.mit.edu	37	17	7577531	7577532	+	Missense_Mutation	DNP	GG	AA	AA	rs67026029		TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z049-TP	Broad	Missense_Mutation	DNP	7577531	7577532	TP53	17	GG	AA	AA	AA	1	0	0	0	0	1	0	0	0	600	47	3	3	16226	78	340
PIK3CA	5290	broad.mit.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	A	A	rs121913273		TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5044-TP	Broad	Missense_Mutation	SNP	178936082	178936082	PIK3CA	3	G	A	A	A	1	0	0	0	0	1	0	0	0	585	45	3	3	11786	149	334
APC	324	broad.mit.edu	37	5	112175212	112175216	+	Frame_Shift_Del	DEL	AAAAG	-	-			TCGA-17-Z007-01A-01W-0746-08	TCGA-17-Z007-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z007-TP	Broad	Frame_Shift_Del	DEL	112175212	112175216	APC	5	AAAAG	-	-	-	1	0	1	0	1	0	0	0	0	163	13	5	5	754	40	333
TP53	7157	broad.mit.edu	37	17	7577535	7577535	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4430-TP	Broad	Missense_Mutation	SNP	7577535	7577535	TP53	17	C	A	A	A	1	0	0	0	0	1	0	0	0	312	24	2	2	16226	25	327
TP53	7157	broad.mit.edu	37	17	7577535	7577535	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-5423-TP	Broad	Missense_Mutation	SNP	7577535	7577535	TP53	17	C	A	A	A	1	0	0	0	0	1	0	0	0	312	24	2	2	16226	30	327
TP53	7157	broad.mit.edu	37	17	7577535	7577535	+	Missense_Mutation	SNP	C	A	A			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-35-4122-TP	Broad	Missense_Mutation	SNP	7577535	7577535	TP53	17	C	A	A	A	1	0	0	0	0	1	0	0	0	312	24	2	2	16226	93	327
HRAS	3265	broad.mit.edu	37	11	533874	533874	+	Missense_Mutation	SNP	T	A	A	rs121913233		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4420-TP	Broad	Missense_Mutation	SNP	533874	533874	HRAS	11	T	A	A	A	1	0	0	0	0	1	0	0	0	715	55	4	4	7256	19	208
KRAS	3845	broad.mit.edu	37	12	25380276	25380276	+	Missense_Mutation	SNP	T	A	A	rs121913240		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z014-TP	Broad	Missense_Mutation	SNP	25380276	25380276	KRAS	12	T	A	A	A	1	0	0	0	0	1	0	0	0	819	63	4	4	8338	47	198
TP53	7157	broad.mit.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z020-TP	Broad	Nonsense_Mutation	SNP	7578212	7578212	TP53	17	G	A	A	A	1	0	0	0	0	0	1	0	0	480	37	5	3	16226	52	198
TP53	7157	broad.mit.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-4490-TP	Broad	Nonsense_Mutation	SNP	7578212	7578212	TP53	17	G	A	A	A	1	0	0	0	0	0	1	0	0	480	37	5	3	16226	135	198
KRAS	3845	broad.mit.edu	37	12	25380276	25380276	+	Missense_Mutation	SNP	T	A	A	rs121913240		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-64-5775-TP	Broad	Missense_Mutation	SNP	25380276	25380276	KRAS	12	T	A	A	A	1	0	0	0	0	1	0	0	0	819	63	4	4	8338	188	198
KRAS	3845	broad.mit.edu	37	12	25380276	25380276	+	Missense_Mutation	SNP	T	A	A	rs121913240		TCGA-64-5815-01A-01D-1625-08	TCGA-64-5815-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-64-5815-TP	Broad	Missense_Mutation	SNP	25380276	25380276	KRAS	12	T	A	A	A	1	0	0	0	0	1	0	0	0	819	63	4	4	8338	192	198
TP53	7157	broad.mit.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	C	C	rs121912666		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z044-TP	Broad	Missense_Mutation	SNP	7578190	7578190	TP53	17	T	C	C	C	1	0	0	0	0	1	0	0	0	637	49	4	4	16226	73	188
TP53	7157	broad.mit.edu	37	17	7578403	7578403	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4395-TP	Broad	Missense_Mutation	SNP	7578403	7578403	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	325	25	3	3	16226	8	164
TP53	7157	broad.mit.edu	37	17	7578403	7578403	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-73-4676-TP	Broad	Missense_Mutation	SNP	7578403	7578403	TP53	17	C	A	A	A	1	0	0	0	0	1	0	0	0	325	25	2	2	16226	210	164
TP53	7157	broad.mit.edu	37	17	7578393	7578393	+	Missense_Mutation	SNP	A	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5066-TP	Broad	Missense_Mutation	SNP	7578393	7578393	TP53	17	A	T	T	T	1	0	0	0	0	1	0	0	0	102	8	4	4	16226	154	163
TP53	7157	broad.mit.edu	37	17	7578263	7578263	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4433-TP	Broad	Nonsense_Mutation	SNP	7578263	7578263	TP53	17	G	A	A	A	1	0	0	0	0	0	1	0	0	506	39	5	3	16226	27	160
TP53	7157	broad.mit.edu	37	17	7578264	7578264	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-5423-TP	Broad	Missense_Mutation	SNP	7578264	7578264	TP53	17	G	C	C	C	1	0	0	0	0	1	0	0	0	525	41	3	3	16226	30	160
TP53	7157	broad.mit.edu	37	17	7578263	7578263	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-2666-01A-01D-1489-08	TCGA-44-2666-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-2666-TP	Broad	Nonsense_Mutation	SNP	7578263	7578263	TP53	17	G	A	A	A	1	0	0	0	0	0	1	0	0	506	39	5	3	16226	112	160
TP53	7157	broad.mit.edu	37	17	7578463	7578463	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z030-TP	Broad	Missense_Mutation	SNP	7578463	7578463	TP53	17	C	G	G	G	1	0	0	0	0	1	0	0	0	351	27	3	3	16226	60	156
TP53	7157	broad.mit.edu	37	17	7577568	7577568	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-5428-TP	Broad	Missense_Mutation	SNP	7577568	7577568	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	221	17	3	3	16226	32	149
EGFR	1956	broad.mit.edu	37	7	55242465	55242479	+	In_Frame_Del	DEL	GGAATTAAGAGAAGC	-	-	rs121913421		TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z032-TP	Broad	In_Frame_Del	DEL	55242465	55242479	EGFR	7	GGAATTAAGAGAAGC	-	-	-	1	0	1	0	1	0	0	0	0	451	35	5	5	4915	62	149
EGFR	1956	broad.mit.edu	37	7	55242465	55242479	+	In_Frame_Del	DEL	GGAATTAAGAGAAGC	-	-	rs121913421		TCGA-38-4628-01A-01D-1265-08	TCGA-38-4628-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-38-4628-TP	Broad	In_Frame_Del	DEL	55242465	55242479	EGFR	7	GGAATTAAGAGAAGC	-	-	-	1	0	1	0	1	0	0	0	0	451	35	5	5	4915	99	149
EGFR	1956	broad.mit.edu	37	7	55242465	55242479	+	In_Frame_Del	DEL	GGAATTAAGAGAAGC	-	-	rs121913421		TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-38-6178-TP	Broad	In_Frame_Del	DEL	55242465	55242479	EGFR	7	GGAATTAAGAGAAGC	-	-	-	1	0	1	0	1	0	0	0	0	451	35	5	5	4915	104	149
EGFR	1956	broad.mit.edu	37	7	55242465	55242479	+	In_Frame_Del	DEL	GGAATTAAGAGAAGC	-	-	rs121913421		TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-75-6207-TP	Broad	In_Frame_Del	DEL	55242465	55242479	EGFR	7	GGAATTAAGAGAAGC	-	-	-	1	0	1	0	1	0	0	0	0	451	35	5	5	4915	220	149
TP53	7157	broad.mit.edu	37	17	7577105	7577105	+	Missense_Mutation	SNP	G	T	T			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-75-5146-TP	Broad	Missense_Mutation	SNP	7577105	7577105	TP53	17	G	T	T	T	1	0	0	0	0	1	0	0	0	455	35	2	2	16226	215	139
TP53	7157	broad.mit.edu	37	17	7578455	7578455	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z057-TP	Broad	Missense_Mutation	SNP	7578455	7578455	TP53	17	C	G	G	G	1	0	0	0	0	1	0	0	0	351	27	3	3	16226	86	137
TP53	7157	broad.mit.edu	37	17	7578455	7578455	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4632-01A-01D-1753-08	TCGA-38-4632-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-38-4632-TP	Broad	Missense_Mutation	SNP	7578455	7578455	TP53	17	C	G	G	G	1	0	0	0	0	1	0	0	0	351	27	3	3	16226	103	137
TP53	7157	broad.mit.edu	37	17	7578455	7578455	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-64-1677-TP	Broad	Missense_Mutation	SNP	7578455	7578455	TP53	17	C	G	G	G	1	0	0	0	0	1	0	0	0	351	27	3	3	16226	184	137
TP53	7157	broad.mit.edu	37	17	7577099	7577099	+	Missense_Mutation	SNP	C	A	A	rs121912660		TCGA-05-4420-01A-01D-1265-08	TCGA-05-4420-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4420-TP	Broad	Missense_Mutation	SNP	7577099	7577099	TP53	17	C	A	A	A	1	0	0	0	0	1	0	0	0	416	32	2	2	16226	19	132
TP53	7157	broad.mit.edu	37	17	7577099	7577099	+	Missense_Mutation	SNP	C	G	G	rs121912660		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-2662-TP	Broad	Missense_Mutation	SNP	7577099	7577099	TP53	17	C	C	G	G	1	0	0	0	0	1	0	0	0	416	32	3	3	16226	110	132
TP53	7157	broad.mit.edu	37	17	7577097	7577097	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4427-TP	Broad	Missense_Mutation	SNP	7577097	7577097	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	416	32	3	3	16226	24	128
TP53	7157	broad.mit.edu	37	17	7577097	7577097	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z037-TP	Broad	Missense_Mutation	SNP	7577097	7577097	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	416	32	3	3	16226	66	128
TP53	7157	broad.mit.edu	37	17	7577097	7577097	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-55-1596-TP	Broad	Missense_Mutation	SNP	7577097	7577097	TP53	17	C	C	A	A	1	0	0	0	0	1	0	0	0	416	32	2	2	16226	178	128
TP53	7157	broad.mit.edu	37	17	7577570	7577570	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z045-TP	Broad	Missense_Mutation	SNP	7577570	7577570	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	221	17	3	3	16226	74	124
TP53	7157	broad.mit.edu	37	17	7577570	7577570	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z052-01A-01W-0747-08	TCGA-17-Z052-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z052-TP	Broad	Missense_Mutation	SNP	7577570	7577570	TP53	17	C	G	G	G	1	0	0	0	0	1	0	0	0	221	17	3	3	16226	81	124
TP53	7157	broad.mit.edu	37	17	7577142	7577142	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z046-TP	Broad	Nonsense_Mutation	SNP	7577142	7577142	TP53	17	C	A	A	A	1	0	0	0	0	0	1	0	0	286	22	5	2	16226	75	118
TP53	7157	broad.mit.edu	37	17	7577142	7577143	+	Nonsense_Mutation	DNP	CC	AT	AT			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z026-TP	Broad	Nonsense_Mutation	DNP	7577142	7577143	TP53	17	CC	AT	AT	AT	1	0	0	0	0	0	1	0	0	286	22	5	2	16226	57	117
TP53	7157	broad.mit.edu	37	17	7578457	7578457	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5933-TP	Broad	Missense_Mutation	SNP	7578457	7578457	TP53	17	C	A	A	A	1	0	0	0	0	1	0	0	0	351	27	1	1	16226	160	114
TP53	7157	broad.mit.edu	37	17	7578458	7578458	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-5946-01A-11D-1753-08	TCGA-50-5946-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5946-TP	Broad	Frame_Shift_Del	DEL	7578458	7578458	TP53	17	G	-	-	-	1	0	1	0	1	0	0	0	0	507	39	5	5	16226	167	114
TP53	7157	broad.mit.edu	37	17	7577100	7577100	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-64-5775-TP	Broad	Missense_Mutation	SNP	7577100	7577100	TP53	17	T	C	C	C	1	0	0	0	0	1	0	0	0	700	54	4	4	16226	188	109
TP53	7157	broad.mit.edu	37	17	7578442	7578442	+	Missense_Mutation	SNP	T	C	C	rs148924904		TCGA-75-5147-01A-01D-1625-08	TCGA-75-5147-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-75-5147-TP	Broad	Missense_Mutation	SNP	7578442	7578442	TP53	17	T	C	C	C	1	0	0	0	0	1	0	0	0	741	57	4	4	16226	216	109
APC	324	broad.mit.edu	37	5	112175752	112175752	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z037-TP	Broad	Frame_Shift_Del	DEL	112175752	112175752	APC	5	T	-	-	-	1	0	1	0	1	0	0	0	0	717	56	5	5	754	66	104
TP53	7157	broad.mit.edu	37	17	7577559	7577559	+	Missense_Mutation	SNP	G	A	A	rs28934573		TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-35-5375-TP	Broad	Missense_Mutation	SNP	7577559	7577559	TP53	17	G	A	A	A	1	0	0	0	0	1	0	0	0	533	41	3	3	16226	95	104
TP53	7157	broad.mit.edu	37	17	7577551	7577551	+	Missense_Mutation	SNP	C	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-55-1592-TP	Broad	Missense_Mutation	SNP	7577551	7577551	TP53	17	C	A	A	A	1	0	0	0	0	1	0	0	0	286	22	2	2	16226	175	104
TP53	7157	broad.mit.edu	37	17	7577085	7577085	+	Missense_Mutation	SNP	C	T	T	rs112431538		TCGA-50-5939-01A-11D-1625-08	TCGA-50-5939-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5939-TP	Broad	Missense_Mutation	SNP	7577085	7577085	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	416	32	3	3	16226	163	87
TP53	7157	broad.mit.edu	37	17	7577085	7577085	+	Nonsense_Mutation	SNP	C	A	A	rs112431538		TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5944-TP	Broad	Nonsense_Mutation	SNP	7577085	7577085	TP53	17	C	A	A	A	1	0	0	0	0	0	1	0	0	416	32	5	2	16226	166	87
TP53	7157	broad.mit.edu	37	17	7577124	7577124	+	Missense_Mutation	SNP	C	T	T	rs121912657		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-6594-TP	Broad	Missense_Mutation	SNP	7577124	7577124	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	234	18	3	3	16226	172	84
TP53	7157	broad.mit.edu	37	17	7578479	7578479	+	Missense_Mutation	SNP	G	A	A	rs28934874		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z005-TP	Broad	Missense_Mutation	SNP	7578479	7578479	TP53	17	G	A	A	A	1	0	0	0	0	1	0	0	0	572	44	3	3	16226	39	82
FBXW7	55294	broad.mit.edu	37	4	153249384	153249384	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z037-01A-01W-0746-08	TCGA-17-Z037-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z037-TP	Broad	Missense_Mutation	SNP	153249384	153249384	FBXW7	4	C	T	T	T	1	0	0	0	0	1	0	0	0	247	19	3	3	5706	66	82
TP53	7157	broad.mit.edu	37	17	7577108	7577108	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4405-TP	Broad	Missense_Mutation	SNP	7577108	7577108	TP53	17	C	A	A	A	1	0	0	0	0	1	0	0	0	221	17	2	2	16226	14	81
TP53	7157	broad.mit.edu	37	17	7577108	7577108	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-4505-TP	Broad	Missense_Mutation	SNP	7577108	7577108	TP53	17	C	A	A	A	1	0	0	0	0	1	0	0	0	221	17	2	2	16226	138	81
TP53	7157	broad.mit.edu	37	17	7577114	7577114	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z027-01A-01W-0746-08	TCGA-17-Z027-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z027-TP	Broad	Missense_Mutation	SNP	7577114	7577114	TP53	17	C	A	A	A	1	0	0	0	0	1	0	0	0	221	17	2	2	16226	58	77
EGFR	1956	broad.mit.edu	37	7	55249071	55249071	+	Missense_Mutation	SNP	C	T	T	rs121434569		TCGA-49-4494-01A-01D-1265-08	TCGA-49-4494-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-4494-TP	Broad	Missense_Mutation	SNP	55249071	55249071	EGFR	7	C	T	T	T	1	0	0	0	0	1	0	0	0	247	19	3	3	4915	136	73
TP53	7157	broad.mit.edu	37	17	7578205	7578205	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z042-TP	Broad	Missense_Mutation	SNP	7578205	7578205	TP53	17	C	A	A	A	1	0	0	0	0	1	0	0	0	260	20	2	2	16226	71	72
TP53	7157	broad.mit.edu	37	17	7578535	7578535	+	Missense_Mutation	SNP	T	C	C			TCGA-38-4630-01A-01D-1265-08	TCGA-38-4630-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-38-4630-TP	Broad	Missense_Mutation	SNP	7578535	7578535	TP53	17	T	C	C	C	1	0	0	0	0	1	0	0	0	728	56	4	4	16226	101	71
TP53	7157	broad.mit.edu	37	17	7578536	7578536	+	Missense_Mutation	SNP	T	C	C			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-6779-TP	Broad	Missense_Mutation	SNP	7578536	7578536	TP53	17	T	T	C	C	1	0	0	0	0	1	0	0	0	819	63	4	4	16226	131	71
EGFR	1956	broad.mit.edu	37	7	55242466	55242480	+	In_Frame_Del	DEL	GAATTAAGAGAAGCA	-	-	rs121913426		TCGA-49-4501-01A-01D-1265-08	TCGA-49-4501-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-4501-TP	Broad	In_Frame_Del	DEL	55242466	55242480	EGFR	7	GAATTAAGAGAAGCA	-	-	-	1	0	1	0	1	0	0	0	0	533	41	5	5	4915	137	71
TP53	7157	broad.mit.edu	37	17	7578224	7578224	+	Nonsense_Mutation	SNP	T	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5045-TP	Broad	Nonsense_Mutation	SNP	7578224	7578224	TP53	17	T	A	A	A	1	0	0	0	0	0	1	0	0	713	55	5	4	16226	150	69
TP53	7157	broad.mit.edu	37	17	7578203	7578203	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5068-TP	Broad	Missense_Mutation	SNP	7578203	7578203	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	221	17	3	3	16226	155	66
EGFR	1956	broad.mit.edu	37	7	55241708	55241708	+	Missense_Mutation	SNP	G	C	C	rs121913428		TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-6595-TP	Broad	Missense_Mutation	SNP	55241708	55241708	EGFR	7	G	C	C	C	1	0	0	0	0	1	0	0	0	546	42	3	3	4915	173	66
TP53	7157	broad.mit.edu	37	17	7578275	7578275	+	Nonsense_Mutation	SNP	G	A	A			TCGA-75-6207-01A-11D-1753-08	TCGA-75-6207-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-75-6207-TP	Broad	Nonsense_Mutation	SNP	7578275	7578275	TP53	17	G	A	A	A	1	0	0	0	0	0	1	0	0	585	45	5	3	16226	220	62
TP53	7157	broad.mit.edu	37	17	7578474	7578474	+	Frame_Shift_Del	DEL	C	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-55-5899-TP	Broad	Frame_Shift_Del	DEL	7578474	7578474	TP53	17	C	-	-	-	1	0	1	0	1	0	0	0	0	340	27	5	5	16226	179	61
EGFR	1956	broad.mit.edu	37	7	55249012	55249013	+	In_Frame_Ins	INS	-	GGGTTA	GGGTTA			TCGA-17-Z048-01A-01W-0746-08	TCGA-17-Z048-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z048-TP	Broad	In_Frame_Ins	INS	55249012	55249013	EGFR	7	-	GGGTTA	GGGTTA	GGGTTA	1	0	1	1	0	0	0	0	0	220	17	5	5	4915	77	58
TP53	7157	broad.mit.edu	37	17	7577507	7577507	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z055-TP	Broad	Missense_Mutation	SNP	7577507	7577507	TP53	17	T	A	A	A	1	0	0	0	0	1	0	0	0	725	56	4	4	16226	84	55
ERBB2	2064	broad.mit.edu	37	17	37880997	37880998	+	In_Frame_Ins	INS	-	TAT	TAT	rs28933369		TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4434-TP	Broad	In_Frame_Ins	INS	37880997	37880998	ERBB2	17	-	TAT	TAT	TAT	1	0	1	1	0	0	0	0	0	611	47	5	5	5154	28	52
TP53	7157	broad.mit.edu	37	17	7577090	7577090	+	Missense_Mutation	SNP	C	G	G			TCGA-38-6178-01A-11D-1753-08	TCGA-38-6178-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-38-6178-TP	Broad	Missense_Mutation	SNP	7577090	7577090	TP53	17	C	G	G	G	1	0	0	0	0	1	0	0	0	351	27	3	3	16226	104	52
ERBB2	2064	broad.mit.edu	37	17	37880997	37880998	+	In_Frame_Ins	INS	-	TCT	TCT	rs28933369		TCGA-86-6562-01A-11D-1753-08	TCGA-86-6562-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-86-6562-TP	Broad	In_Frame_Ins	INS	37880997	37880998	ERBB2	17	-	TCT	TCT	TCT	1	0	1	1	0	0	0	0	0	611	47	5	5	5154	224	52
BRAF	673	broad.mit.edu	37	7	140481402	140481402	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4389-01A-01D-1265-08	TCGA-05-4389-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4389-TP	Broad	Missense_Mutation	SNP	140481402	140481402	BRAF	7	C	A	A	A	1	0	0	0	0	1	0	0	0	390	30	2	2	1481	6	47
MET	4233	broad.mit.edu	37	7	116423428	116423428	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-64-5781-TP	Broad	Missense_Mutation	SNP	116423428	116423428	MET	7	T	C	C	C	1	0	0	0	0	1	0	0	0	689	53	4	4	9374	191	47
TP53	7157	broad.mit.edu	37	17	7578469	7578469	+	Missense_Mutation	SNP	C	A	A			TCGA-67-3770-01A-01D-0969-08	TCGA-67-3770-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-67-3770-TP	Broad	Missense_Mutation	SNP	7578469	7578469	TP53	17	C	C	A	A	1	0	0	0	0	1	0	0	0	338	26	2	2	16226	193	47
BRAF	673	broad.mit.edu	37	7	140481402	140481402	+	Missense_Mutation	SNP	C	A	A			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-75-5146-TP	Broad	Missense_Mutation	SNP	140481402	140481402	BRAF	7	C	A	A	A	1	0	0	0	0	1	0	0	0	390	30	2	2	1481	215	47
TP53	7157	broad.mit.edu	37	17	7577082	7577082	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2668-01A-01D-0969-08	TCGA-44-2668-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-2668-TP	Broad	Nonsense_Mutation	SNP	7577082	7577082	TP53	17	C	C	A	A	1	0	0	0	0	0	1	0	0	390	30	5	2	16226	113	44
TP53	7157	broad.mit.edu	37	17	7577081	7577081	+	Missense_Mutation	SNP	T	C	C			TCGA-44-3396-01A-01D-1265-08	TCGA-44-3396-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-3396-TP	Broad	Missense_Mutation	SNP	7577081	7577081	TP53	17	T	T	C	C	1	0	0	0	0	1	0	0	0	806	62	4	4	16226	114	44
APC	324	broad.mit.edu	37	5	112175225	112175225	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4397-TP	Broad	Missense_Mutation	SNP	112175225	112175225	APC	5	G	C	C	C	1	0	0	0	0	1	0	0	0	611	47	3	3	754	10	39
TP53	7157	broad.mit.edu	37	17	7574003	7574003	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4432-01A-01D-1265-08	TCGA-05-4432-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4432-TP	Broad	Nonsense_Mutation	SNP	7574003	7574003	TP53	17	G	A	A	A	1	0	0	0	0	0	1	0	0	506	39	5	3	16226	26	39
EGFR	1956	broad.mit.edu	37	7	55249007	55249007	+	Missense_Mutation	SNP	G	T	T	rs147149347		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-6147-TP	Broad	Missense_Mutation	SNP	55249007	55249007	EGFR	7	G	G	T	T	1	0	0	0	0	1	0	0	0	520	40	1	1	4915	124	38
PTEN	5728	broad.mit.edu	37	10	89717676	89717676	+	Missense_Mutation	SNP	G	T	T	rs121909235		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	89717676	89717676	PTEN	10	G	T	T	T	1	0	0	0	0	1	0	0	0	507	39	1	1	12603	9	37
PTEN	5728	broad.mit.edu	37	10	89717676	89717676	+	Missense_Mutation	SNP	G	T	T	rs121909235		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4417-TP	Broad	Missense_Mutation	SNP	89717676	89717676	PTEN	10	G	T	T	T	1	0	0	0	0	1	0	0	0	507	39	1	1	12603	17	37
CDKN2A	1029	broad.mit.edu	37	9	21971111	21971111	+	Missense_Mutation	SNP	G	A	A	rs121913385		TCGA-05-4433-01A-22D-1855-08	TCGA-05-4433-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4433-TP	Broad	Missense_Mutation	SNP	21971111	21971111	CDKN2A	9	G	A	A	A	1	0	0	0	0	1	0	0	0	598	46	3	3	3126	27	37
TP53	7157	broad.mit.edu	37	17	7577138	7577138	+	Missense_Mutation	SNP	C	A	A			TCGA-75-5146-01A-01D-1625-08	TCGA-75-5146-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-75-5146-TP	Broad	Missense_Mutation	SNP	7577138	7577138	TP53	17	C	A	A	A	1	0	0	0	0	1	0	0	0	299	23	1	1	16226	215	37
TP53	7157	broad.mit.edu	37	17	7578397	7578412	+	Frame_Shift_Del	DEL	TGGGGGCAGCGCCTCA	-	-	rs68130327		TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4402-TP	Broad	Frame_Shift_Del	DEL	7578397	7578412	TP53	17	TGGGGGCAGCGCCTCA	-	-	-	1	0	1	0	1	0	0	0	0	767	59	5	5	16226	12	36
TP53	7157	broad.mit.edu	37	17	7578413	7578413	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z003-TP	Broad	Missense_Mutation	SNP	7578413	7578413	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	221	17	3	3	16226	37	36
CDKN2A	1029	broad.mit.edu	37	9	21971028	21971028	+	Missense_Mutation	SNP	C	G	G	rs121913389		TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z046-TP	Broad	Missense_Mutation	SNP	21971028	21971028	CDKN2A	9	C	G	G	G	1	0	0	0	0	1	0	0	0	286	22	3	3	3126	75	36
TP53	7157	broad.mit.edu	37	17	7578492	7578492	+	Nonsense_Mutation	SNP	C	T	T			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-35-4123-TP	Broad	Nonsense_Mutation	SNP	7578492	7578492	TP53	17	C	T	T	T	1	0	0	0	0	0	1	0	0	286	22	5	3	16226	94	36
APC	324	broad.mit.edu	37	5	112175531	112175531	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-73-4659-TP	Broad	Missense_Mutation	SNP	112175531	112175531	APC	5	G	A	A	A	1	0	0	0	0	1	0	0	0	572	44	3	3	754	204	34
CDKN2A	1029	broad.mit.edu	37	9	21971108	21971108	+	Missense_Mutation	SNP	C	T	T	rs11552822		TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z062-TP	Broad	Missense_Mutation	SNP	21971108	21971108	CDKN2A	9	C	T	T	T	1	0	0	0	0	1	0	0	0	403	31	3	3	3126	91	33
TP53	7157	broad.mit.edu	37	17	7577046	7577046	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5049-TP	Broad	Nonsense_Mutation	SNP	7577046	7577046	TP53	17	C	A	A	A	1	0	0	0	0	0	1	0	0	403	31	5	1	16226	151	33
TP53	7157	broad.mit.edu	37	17	7578466	7578466	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4426-TP	Broad	Missense_Mutation	SNP	7578466	7578466	TP53	17	G	A	A	A	1	0	0	0	0	1	0	0	0	572	44	3	3	16226	23	32
EGFR	1956	broad.mit.edu	37	7	55259524	55259524	+	Missense_Mutation	SNP	T	A	A	rs121913444		TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-5423-TP	Broad	Missense_Mutation	SNP	55259524	55259524	EGFR	7	T	A	A	A	1	0	0	0	0	1	0	0	0	715	55	4	4	4915	30	32
EGFR	1956	broad.mit.edu	37	7	55259524	55259524	+	Missense_Mutation	SNP	T	G	G	rs121913444		TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z035-TP	Broad	Missense_Mutation	SNP	55259524	55259524	EGFR	7	T	G	G	G	1	0	0	0	0	1	0	0	0	715	55	4	4	4915	64	32
TP53	7157	broad.mit.edu	37	17	7578400	7578400	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z035-01A-01W-0746-08	TCGA-17-Z035-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z035-TP	Broad	Missense_Mutation	SNP	7578400	7578400	TP53	17	G	C	C	C	1	0	0	0	0	1	0	0	0	559	43	3	3	16226	64	32
CDKN2A	1029	broad.mit.edu	37	9	21971209	21971209	+	Splice_Site	SNP	T	A	A			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4426-TP	Broad	Splice_Site	SNP	21971209	21971209	CDKN2A	9	T	A	A	A	1	0	0	0	0	0	0	1	0	715	55	5	4	3126	23	31
TP53	7157	broad.mit.edu	37	17	7579356	7579356	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z012-TP	Broad	Missense_Mutation	SNP	7579356	7579356	TP53	17	G	T	T	T	1	0	0	0	0	1	0	0	0	425	33	2	2	16226	45	31
TP53	7157	broad.mit.edu	37	17	7578433	7578433	+	Nonsense_Mutation	SNP	G	C	C			TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-55-1594-TP	Broad	Nonsense_Mutation	SNP	7578433	7578433	TP53	17	G	G	C	C	1	0	0	0	0	0	1	0	0	585	45	5	3	16226	176	31
CDKN2A	1029	broad.mit.edu	37	9	21971107	21971107	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-38-4625-TP	Broad	Missense_Mutation	SNP	21971107	21971107	CDKN2A	9	T	A	A	A	1	0	0	0	0	1	0	0	0	754	58	4	4	3126	96	30
TP53	7157	broad.mit.edu	37	17	7578177	7578177	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1678-01A-01W-0928-08	TCGA-64-1678-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-64-1678-TP	Broad	Missense_Mutation	SNP	7578177	7578177	TP53	17	C	A	A	A	1	0	0	0	0	1	0	0	0	311	24	2	2	16226	185	30
KRAS	3845	broad.mit.edu	37	12	25378562	25378562	+	Missense_Mutation	SNP	C	G	G	rs121913527		TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-73-4670-TP	Broad	Missense_Mutation	SNP	25378562	25378562	KRAS	12	C	G	G	G	1	0	0	0	0	1	0	0	0	364	28	3	3	8338	208	30
EGFR	1956	broad.mit.edu	37	7	55249005	55249005	+	Missense_Mutation	SNP	G	T	T	rs146024686		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-6147-TP	Broad	Missense_Mutation	SNP	55249005	55249005	EGFR	7	G	G	T	T	1	0	0	0	0	1	0	0	0	442	34	2	2	4915	124	29
EGFR	1956	broad.mit.edu	37	7	55249005	55249005	+	Missense_Mutation	SNP	G	T	T	rs146024686		TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-6595-TP	Broad	Missense_Mutation	SNP	55249005	55249005	EGFR	7	G	T	T	T	1	0	0	0	0	1	0	0	0	442	34	2	2	4915	173	29
BRAF	673	broad.mit.edu	37	7	140453155	140453155	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-5428-TP	Broad	Missense_Mutation	SNP	140453155	140453155	BRAF	7	C	T	T	T	1	0	0	0	0	1	0	0	0	377	29	3	3	1481	32	28
TP53	7157	broad.mit.edu	37	17	7579358	7579358	+	Missense_Mutation	SNP	C	A	A	rs11540654		TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z015-TP	Broad	Missense_Mutation	SNP	7579358	7579358	TP53	17	C	A	A	A	1	0	0	0	0	1	0	0	0	247	19	1	1	16226	48	28
FBXW7	55294	broad.mit.edu	37	4	153247364	153247364	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z018-01A-01W-0746-08	TCGA-17-Z018-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z018-TP	Broad	Missense_Mutation	SNP	153247364	153247364	FBXW7	4	C	A	A	A	1	0	0	0	0	1	0	0	0	416	32	2	2	5706	51	28
TP53	7157	broad.mit.edu	37	17	7579358	7579358	+	Missense_Mutation	SNP	C	A	A	rs11540654		TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-6147-TP	Broad	Missense_Mutation	SNP	7579358	7579358	TP53	17	C	C	A	A	1	0	0	0	0	1	0	0	0	247	19	1	1	16226	124	28
BRAF	673	broad.mit.edu	37	7	140453155	140453155	+	Missense_Mutation	SNP	C	G	G			TCGA-50-5044-01A-21D-1855-08	TCGA-50-5044-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5044-TP	Broad	Missense_Mutation	SNP	140453155	140453155	BRAF	7	C	G	G	G	1	0	0	0	0	1	0	0	0	377	29	3	3	1481	149	28
APC	324	broad.mit.edu	37	5	112175532	112175533	+	Frame_Shift_Ins	INS	-	A	A			TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4402-TP	Broad	Frame_Shift_Ins	INS	112175532	112175533	APC	5	-	A	A	A	1	0	1	1	0	0	0	0	0	741	57	5	5	754	12	27
APC	324	broad.mit.edu	37	5	112175753	112175771	+	Frame_Shift_Del	DEL	TTATTACATTTTGCCACGG	-	-	rs41115	byFrequency;by1000genomes	TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z036-TP	Broad	Frame_Shift_Del	DEL	112175753	112175771	APC	5	TTATTACATTTTGCCACGG	-	-	-	1	0	1	0	1	0	0	0	0	829	64	5	5	754	65	27
TP53	7157	broad.mit.edu	37	17	7577565	7577565	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5778-01A-01D-1625-08	TCGA-64-5778-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-64-5778-TP	Broad	Missense_Mutation	SNP	7577565	7577565	TP53	17	T	C	C	C	1	0	0	0	0	1	0	0	0	780	60	4	4	16226	189	27
TP53	7157	broad.mit.edu	37	17	7578175	7578175	+	Splice_Site	SNP	A	T	T			TCGA-17-Z047-01A-01W-0747-08	TCGA-17-Z047-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z047-TP	Broad	Splice_Site	SNP	7578175	7578175	TP53	17	A	T	T	T	1	0	0	0	0	0	0	1	0	130	10	5	4	16226	76	25
TP53	7157	broad.mit.edu	37	17	7578175	7578175	+	Splice_Site	SNP	A	G	G			TCGA-35-4122-01A-01D-1105-08	TCGA-35-4122-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-35-4122-TP	Broad	Splice_Site	SNP	7578175	7578175	TP53	17	A	G	G	G	1	0	0	0	0	0	0	1	0	130	10	5	4	16226	93	25
PTEN	5728	broad.mit.edu	37	10	89720851	89720851	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z022-TP	Broad	Missense_Mutation	SNP	89720851	89720851	PTEN	10	C	G	G	G	1	0	0	0	0	1	0	0	0	233	18	3	3	12603	54	24
PTPN11	5781	broad.mit.edu	37	12	112926888	112926888	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z011-TP	Broad	Missense_Mutation	SNP	112926888	112926888	PTPN11	12	G	T	T	T	1	0	0	0	0	1	0	0	0	559	43	2	2	12645	44	23
TP53	7157	broad.mit.edu	37	17	7578555	7578556	+	Splice_Site	DNP	CT	AA	AA			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z021-TP	Broad	Splice_Site	DNP	7578555	7578556	TP53	17	CT	AA	AA	AA	1	0	0	0	0	0	0	1	0	260	20	5	2	16226	53	23
PTPN11	5781	broad.mit.edu	37	12	112926888	112926888	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z046-TP	Broad	Missense_Mutation	SNP	112926888	112926888	PTPN11	12	G	T	T	T	1	0	0	0	0	1	0	0	0	559	43	2	2	12645	75	23
TP53	7157	broad.mit.edu	37	17	7578556	7578556	+	Splice_Site	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-2659-TP	Broad	Splice_Site	SNP	7578556	7578556	TP53	17	T	T	A	A	1	0	0	0	0	0	0	1	0	715	55	5	4	16226	108	23
TP53	7157	broad.mit.edu	37	17	7577518	7577518	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z017-TP	Broad	Missense_Mutation	SNP	7577518	7577518	TP53	17	T	A	A	A	1	0	0	0	0	1	0	0	0	663	51	4	4	16226	50	20
CDKN2A	1029	broad.mit.edu	37	9	21971140	21971140	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4505-01A-01D-1265-08	TCGA-49-4505-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-4505-TP	Broad	Missense_Mutation	SNP	21971140	21971140	CDKN2A	9	G	T	T	T	1	0	0	0	0	1	0	0	0	546	42	2	2	3126	138	20
TP53	7157	broad.mit.edu	37	17	7577609	7577609	+	Splice_Site	SNP	C	G	G			TCGA-50-6593-01A-11D-1753-08	TCGA-50-6593-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-6593-TP	Broad	Splice_Site	SNP	7577609	7577609	TP53	17	C	G	G	G	1	0	0	0	0	0	0	1	0	312	24	5	3	16226	171	20
TP53	7157	broad.mit.edu	37	17	7577610	7577610	+	Splice_Site	SNP	T	C	C			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-73-4670-TP	Broad	Splice_Site	SNP	7577610	7577610	TP53	17	T	C	C	C	1	0	0	0	0	0	0	1	0	689	53	5	4	16226	208	20
EGFR	1956	broad.mit.edu	37	7	55259441	55259441	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-5423-TP	Broad	Missense_Mutation	SNP	55259441	55259441	EGFR	7	G	T	T	T	1	0	0	0	0	1	0	0	0	607	47	2	2	4915	30	19
APC	324	broad.mit.edu	37	5	112175508	112175508	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z012-TP	Broad	Missense_Mutation	SNP	112175508	112175508	APC	5	A	G	G	G	1	0	0	0	0	1	0	0	0	91	7	4	4	754	45	19
TP53	7157	broad.mit.edu	37	17	7578382	7578382	+	Nonsense_Mutation	SNP	G	C	C			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-6595-TP	Broad	Nonsense_Mutation	SNP	7578382	7578382	TP53	17	G	C	C	C	1	0	0	0	0	0	1	0	0	585	45	5	3	16226	173	19
TP53	7157	broad.mit.edu	37	17	7578542	7578542	+	Missense_Mutation	SNP	G	A	A			TCGA-75-5125-01A-01D-1753-08	TCGA-75-5125-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-75-5125-TP	Broad	Missense_Mutation	SNP	7578542	7578542	TP53	17	G	A	A	A	1	0	0	0	0	1	0	0	0	455	35	3	3	16226	213	18
PIK3CA	5290	broad.mit.edu	37	3	178916946	178916946	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6592-01A-11D-1753-08	TCGA-50-6592-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-6592-TP	Broad	Missense_Mutation	SNP	178916946	178916946	PIK3CA	3	G	C	C	C	1	0	0	0	0	1	0	0	0	425	33	3	3	11786	170	17
PTEN	5728	broad.mit.edu	37	10	89692883	89692883	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4658-01A-01D-1753-08	TCGA-73-4658-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-73-4658-TP	Broad	Missense_Mutation	SNP	89692883	89692883	PTEN	10	C	T	T	T	1	0	0	0	0	1	0	0	0	377	29	3	3	12603	203	17
TP53	7157	broad.mit.edu	37	17	7574017	7574017	+	Missense_Mutation	SNP	C	A	A	rs121912664		TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-6144-TP	Broad	Missense_Mutation	SNP	7574017	7574017	TP53	17	C	C	A	A	1	0	0	0	0	1	0	0	0	351	27	1	1	16226	121	16
TP53	7157	broad.mit.edu	37	17	7578370	7578370	+	Splice_Site	SNP	C	A	A			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-6590-TP	Broad	Splice_Site	SNP	7578370	7578370	TP53	17	C	A	A	A	1	0	0	0	0	0	0	1	0	234	18	5	2	16226	168	16
BRAF	673	broad.mit.edu	37	7	140481411	140481411	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4410-TP	Broad	Missense_Mutation	SNP	140481411	140481411	BRAF	7	C	A	A	A	1	0	0	0	0	1	0	0	0	390	30	2	2	1481	15	15
TP53	7157	broad.mit.edu	37	17	7578268	7578268	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4424-TP	Broad	Missense_Mutation	SNP	7578268	7578268	TP53	17	A	C	C	C	1	0	0	0	0	1	0	0	0	39	3	4	4	16226	21	15
BRAF	673	broad.mit.edu	37	7	140481411	140481411	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-6594-TP	Broad	Missense_Mutation	SNP	140481411	140481411	BRAF	7	C	A	A	A	1	0	0	0	0	1	0	0	0	390	30	2	2	1481	172	15
CDKN2A	1029	broad.mit.edu	37	9	21971057	21971058	+	Frame_Shift_Ins	INS	-	A	A	rs104894094		TCGA-55-1594-01A-01D-1040-01	TCGA-55-1594-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-55-1594-TP	Broad	Frame_Shift_Ins	INS	21971057	21971058	CDKN2A	9	-	A	A	A	1	0	1	1	0	0	0	0	0	299	23	5	5	3126	176	15
GATA1	2623	broad.mit.edu	37	X	48649677	48649678	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4427-TP	Broad	Missense_Mutation	DNP	48649677	48649678	GATA1	23	CC	AT	AT	AT	1	0	0	0	0	1	0	0	0	234	18	2	2	6178	24	14
TP53	7157	broad.mit.edu	37	17	7577506	7577506	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z022-TP	Broad	Missense_Mutation	SNP	7577506	7577506	TP53	17	C	A	A	A	1	0	0	0	0	1	0	0	0	416	32	2	2	16226	54	14
EGFR	1956	broad.mit.edu	37	7	55259439	55259439	+	Missense_Mutation	SNP	T	G	G			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-6591-TP	Broad	Missense_Mutation	SNP	55259439	55259439	EGFR	7	T	G	G	G	1	0	0	0	0	1	0	0	0	725	56	4	4	4915	169	14
CDKN2A	1029	broad.mit.edu	37	9	21971000	21971000	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z030-TP	Broad	Nonsense_Mutation	SNP	21971000	21971000	CDKN2A	9	C	A	A	A	1	0	0	0	0	0	1	0	0	390	30	5	2	3126	60	13
TP53	7157	broad.mit.edu	37	17	7577156	7577156	+	Splice_Site	DEL	C	-	-			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z031-TP	Broad	Splice_Site	DEL	7577156	7577156	TP53	17	C	-	-	-	1	0	1	0	1	0	0	1	0	260	20	5	5	16226	61	13
TP53	7157	broad.mit.edu	37	17	7576928	7576928	+	Splice_Site	SNP	T	C	C			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-3918-TP	Broad	Splice_Site	SNP	7576928	7576928	TP53	17	T	C	C	C	1	0	0	0	0	0	0	1	0	689	53	5	4	16226	116	13
CDKN2A	1029	broad.mit.edu	37	9	21971203	21971203	+	Missense_Mutation	SNP	A	C	C			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-67-3771-TP	Broad	Missense_Mutation	SNP	21971203	21971203	CDKN2A	9	A	A	C	C	1	0	0	0	0	1	0	0	0	104	8	4	4	3126	194	13
VHL	7428	broad.mit.edu	37	3	10188224	10188224	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	10188224	10188224	VHL	3	G	T	T	T	1	0	0	0	0	1	0	0	0	455	35	2	2	17007	9	12
PTEN	5728	broad.mit.edu	37	10	89685269	89685269	+	Splice_Site	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z031-TP	Broad	Splice_Site	SNP	89685269	89685269	PTEN	10	G	T	T	T	1	0	0	0	0	0	0	1	0	455	35	5	2	12603	61	12
TP53	7157	broad.mit.edu	37	17	7576855	7576855	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-6767-01A-11D-1855-08	TCGA-49-6767-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-6767-TP	Broad	Nonsense_Mutation	SNP	7576855	7576855	TP53	17	G	A	A	A	1	0	0	0	0	0	1	0	0	585	45	5	3	16226	148	12
RUNX1	861	broad.mit.edu	37	21	36231792	36231792	+	Missense_Mutation	SNP	C	T	T			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-67-3771-TP	Broad	Missense_Mutation	SNP	36231792	36231792	RUNX1	21	C	C	T	T	1	0	0	0	0	1	0	0	0	390	30	3	3	13603	194	12
TP53	7157	broad.mit.edu	37	17	7574012	7574012	+	Frame_Shift_Del	DEL	C	-	-	rs17882252		TCGA-55-6712-01A-11D-1855-08	TCGA-55-6712-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-55-6712-TP	Broad	Frame_Shift_Del	DEL	7574012	7574012	TP53	17	C	-	-	-	1	0	1	0	1	0	0	0	0	403	31	5	5	16226	182	10
WT1	7490	broad.mit.edu	37	11	32413565	32413565	+	Missense_Mutation	SNP	C	A	A	rs121907903		TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-64-5781-TP	Broad	Missense_Mutation	SNP	32413565	32413565	WT1	11	C	A	A	A	1	0	0	0	0	1	0	0	0	299	23	1	1	17252	191	10
GATA3	2625	broad.mit.edu	37	10	8111435	8111435	+	Splice_Site	SNP	G	T	T			TCGA-73-4662-01A-01D-1265-08	TCGA-73-4662-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-73-4662-TP	Broad	Splice_Site	SNP	8111435	8111435	GATA3	10	G	T	T	T	1	0	0	0	0	0	0	1	0	468	36	5	2	6180	205	10
TP53	7157	broad.mit.edu	37	17	7578550	7578550	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z001-TP	Broad	Missense_Mutation	SNP	7578550	7578550	TP53	17	G	A	A	A	1	0	0	0	0	1	0	0	0	533	41	3	3	16226	36	9
CDKN2A	1029	broad.mit.edu	37	9	21971145	21971145	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z057-01A-01W-0747-08	TCGA-17-Z057-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z057-TP	Broad	Missense_Mutation	SNP	21971145	21971145	CDKN2A	9	G	C	C	C	1	0	0	0	0	1	0	0	0	464	36	3	3	3126	86	9
TP53	7157	broad.mit.edu	37	17	7578550	7578550	+	Missense_Mutation	SNP	G	C	C			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-67-3771-TP	Broad	Missense_Mutation	SNP	7578550	7578550	TP53	17	G	G	C	C	1	0	0	0	0	1	0	0	0	533	41	3	3	16226	194	9
PTEN	5728	broad.mit.edu	37	10	89692790	89692790	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z031-TP	Broad	Missense_Mutation	SNP	89692790	89692790	PTEN	10	G	T	T	T	1	0	0	0	0	1	0	0	0	429	33	2	2	12603	61	8
TP53	7157	broad.mit.edu	37	17	7579375	7579375	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z031-TP	Broad	Missense_Mutation	SNP	7579375	7579375	TP53	17	C	A	A	A	1	0	0	0	0	1	0	0	0	311	24	2	2	16226	61	8
RB1	5925	broad.mit.edu	37	13	48941648	48941648	+	Nonsense_Mutation	SNP	C	T	T	rs121913300		TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z051-TP	Broad	Nonsense_Mutation	SNP	48941648	48941648	RB1	13	C	T	T	T	1	0	0	0	0	0	1	0	0	243	19	5	3	12963	80	8
TP53	7157	broad.mit.edu	37	17	7577587	7577587	+	Missense_Mutation	SNP	T	A	A			TCGA-44-6778-01A-11D-1855-08	TCGA-44-6778-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-6778-TP	Broad	Missense_Mutation	SNP	7577587	7577587	TP53	17	T	T	A	A	1	0	0	0	0	1	0	0	0	663	51	4	4	16226	130	8
ATM	472	broad.mit.edu	37	11	108236087	108236087	+	Missense_Mutation	SNP	G	A	A			TCGA-67-6215-01A-11D-1753-08	TCGA-67-6215-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-67-6215-TP	Broad	Missense_Mutation	SNP	108236087	108236087	ATM	11	G	A	A	A	1	0	0	0	0	1	0	0	0	520	40	3	3	1098	199	8
TP53	7157	broad.mit.edu	37	17	7578235	7578235	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4384-01A-01D-1753-08	TCGA-05-4384-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4384-TP	Broad	Missense_Mutation	SNP	7578235	7578235	TP53	17	T	C	C	C	1	0	0	0	0	1	0	0	0	637	49	4	4	16226	5	7
STK11	6794	broad.mit.edu	37	19	1207078	1207078	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4395-01A-01D-1265-08	TCGA-05-4395-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4395-TP	Broad	Missense_Mutation	SNP	1207078	1207078	STK11	19	G	T	T	T	1	0	0	0	0	1	0	0	0	559	43	2	2	15139	8	7
APC	324	broad.mit.edu	37	5	112175324	112175324	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z011-01A-01W-0746-08	TCGA-17-Z011-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z011-TP	Broad	Nonsense_Mutation	SNP	112175324	112175324	APC	5	G	T	T	T	1	0	0	0	0	0	1	0	0	429	33	5	2	754	44	7
CDKN2A	1029	broad.mit.edu	37	9	21971024	21971024	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z023-TP	Broad	Frame_Shift_Del	DEL	21971024	21971024	CDKN2A	9	G	-	-	-	1	0	1	0	1	0	0	0	0	507	39	5	5	3126	55	7
TP53	7157	broad.mit.edu	37	17	7579494	7579494	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z061-01A-01W-0747-08	TCGA-17-Z061-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z061-TP	Broad	Nonsense_Mutation	SNP	7579494	7579494	TP53	17	T	A	A	A	1	0	0	0	0	0	1	0	0	713	55	5	4	16226	90	7
SMAD4	4089	broad.mit.edu	37	18	48591919	48591919	+	Missense_Mutation	SNP	G	A	A			TCGA-49-4490-01A-21D-1855-08	TCGA-49-4490-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-4490-TP	Broad	Missense_Mutation	SNP	48591919	48591919	SMAD4	18	G	A	A	A	1	0	0	0	0	1	0	0	0	494	38	3	3	14615	135	7
BRAF	673	broad.mit.edu	37	7	140453193	140453193	+	Missense_Mutation	SNP	T	C	C	rs121913370		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-2662-TP	Broad	Missense_Mutation	SNP	140453193	140453193	BRAF	7	T	T	C	C	1	0	0	0	0	1	0	0	0	650	50	4	4	1481	110	6
PTEN	5728	broad.mit.edu	37	10	89624246	89624247	+	Frame_Shift_Ins	INS	-	G	G			TCGA-44-3398-01A-01D-1105-08	TCGA-44-3398-11B-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-3398-TP	Broad	Nonsense_Mutation	SNP	89624246	89624247	PTEN	10	--	--	G	G	1	0	0	0	0	0	1	0	0	143	11	5	4	12603	115	6
BRAF	673	broad.mit.edu	37	7	140453193	140453193	+	Missense_Mutation	SNP	T	C	C	rs121913370		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-6774-TP	Broad	Missense_Mutation	SNP	140453193	140453193	BRAF	7	T	T	C	C	1	0	0	0	0	1	0	0	0	650	50	4	4	1481	126	6
SMAD4	4089	broad.mit.edu	37	18	48591918	48591918	+	Missense_Mutation	SNP	C	A	A	rs80338963		TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-67-6216-TP	Broad	Missense_Mutation	SNP	48591918	48591918	SMAD4	18	C	A	A	A	1	0	0	0	0	1	0	0	0	403	31	1	1	14615	200	6
PTCH1	5727	broad.mit.edu	37	9	98220410	98220410	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4382-TP	Broad	Missense_Mutation	SNP	98220410	98220410	PTCH1	9	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	12595	4	5
CDH1	999	broad.mit.edu	37	16	68849628	68849628	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	68849628	68849628	CDH1	16	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	3062	9	5
CDKN2A	1029	broad.mit.edu	37	9	21971047	21971047	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z026-TP	Broad	Missense_Mutation	SNP	21971047	21971047	CDKN2A	9	A	T	T	T	1	0	0	0	0	1	0	0	0	91	7	4	4	3126	57	5
RB1	5925	broad.mit.edu	37	13	48916851	48916851	+	Splice_Site	SNP	G	T	T			TCGA-17-Z049-01A-01W-0746-08	TCGA-17-Z049-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z049-TP	Broad	Splice_Site	SNP	48916851	48916851	RB1	13	G	T	T	T	1	0	0	0	0	0	0	1	0	572	44	5	2	12963	78	5
TP53	7157	broad.mit.edu	37	17	7579377	7579377	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z062-01A-01W-0747-08	TCGA-17-Z062-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z062-TP	Broad	Nonsense_Mutation	SNP	7579377	7579377	TP53	17	G	A	A	A	1	0	0	0	0	0	1	0	0	611	47	5	3	16226	91	5
CDKN2A	1029	broad.mit.edu	37	9	21971077	21971077	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5645-01A-01D-1625-08	TCGA-44-5645-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-5645-TP	Broad	Missense_Mutation	SNP	21971077	21971077	CDKN2A	9	A	A	G	G	1	0	0	0	0	1	0	0	0	91	7	4	4	3126	120	5
TP53	7157	broad.mit.edu	37	17	7578290	7578290	+	Splice_Site	SNP	C	A	A			TCGA-50-5933-01A-11D-1753-08	TCGA-50-5933-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5933-TP	Broad	Splice_Site	SNP	7578290	7578290	TP53	17	C	A	A	A	1	0	0	0	0	0	0	1	0	312	24	5	2	16226	160	5
JAK2	3717	broad.mit.edu	37	9	5072540	5072540	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-6590-TP	Broad	Missense_Mutation	SNP	5072540	5072540	JAK2	9	C	G	G	G	1	0	0	0	0	1	0	0	0	243	19	3	3	7842	168	5
CDKN2A	1029	broad.mit.edu	37	9	21974763	21974763	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-6595-01A-12D-1855-08	TCGA-50-6595-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-6595-TP	Broad	Frame_Shift_Del	DEL	21974763	21974763	CDKN2A	9	G	-	-	-	1	0	1	0	1	0	0	0	0	506	39	5	5	3126	173	5
WT1	7490	broad.mit.edu	37	11	32413568	32413568	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4382-TP	Broad	Missense_Mutation	SNP	32413568	32413568	WT1	11	G	A	A	A	1	0	0	0	0	1	0	0	0	533	41	3	3	17252	4	4
EGFR	1956	broad.mit.edu	37	7	55241714	55241714	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z026-TP	Broad	Missense_Mutation	SNP	55241714	55241714	EGFR	7	G	T	T	T	1	0	0	0	0	1	0	0	0	572	44	2	2	4915	57	4
MET	4233	broad.mit.edu	37	7	116412043	116412043	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z040-01A-01W-0746-08	TCGA-17-Z040-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z040-TP	Broad	Missense_Mutation	SNP	116412043	116412043	MET	7	G	C	C	C	1	0	0	0	0	1	0	0	0	455	35	3	3	9374	69	4
MET	4233	broad.mit.edu	37	7	116412044	116412044	+	Splice_Site	SNP	G	T	T			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-6745-TP	Broad	Splice_Site	SNP	116412044	116412044	MET	7	G	T	T	T	1	0	0	0	0	0	0	1	0	572	44	5	2	9374	147	4
MET	4233	broad.mit.edu	37	7	116412042	116412045	+	Splice_Site	DEL	AGGT	-	-			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-6597-TP	Broad	Splice_Site	DEL	116412042	116412045	MET	7	AGGT	-	-	-	1	0	1	0	1	0	0	1	0	37	3	5	5	9374	174	4
STK11	6794	broad.mit.edu	37	19	1220371	1220371	+	Splice_Site	SNP	G	T	T			TCGA-67-3774-01A-01D-1040-01	TCGA-67-3774-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-67-3774-TP	Broad	Splice_Site	SNP	1220371	1220371	STK11	19	G	T	T	T	1	0	0	0	0	0	0	1	0	455	35	5	2	15139	197	4
MET	4233	broad.mit.edu	37	7	116412045	116412045	+	Splice_Site	SNP	T	C	C			TCGA-75-5122-01A-01D-1753-08	TCGA-75-5122-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-75-5122-TP	Broad	Splice_Site	SNP	116412045	116412045	MET	7	T	C	C	C	1	0	0	0	0	0	0	1	0	741	57	5	4	9374	212	4
TP53	7157	broad.mit.edu	37	17	7574026	7574026	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6831-01A-11D-1855-08	TCGA-91-6831-11A-02D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-91-6831-TP	Broad	Missense_Mutation	SNP	7574026	7574026	TP53	17	C	A	A	A	1	0	0	0	0	1	0	0	0	286	22	2	2	16226	227	4
TP53	7157	broad.mit.edu	37	17	7574000	7574000	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-91-6836-TP	Broad	Nonsense_Mutation	SNP	7574000	7574000	TP53	17	C	A	A	A	1	0	0	0	0	0	1	0	0	416	32	5	2	16226	229	4
BRAF	673	broad.mit.edu	37	7	140453096	140453096	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4382-TP	Broad	Missense_Mutation	SNP	140453096	140453096	BRAF	7	C	A	A	A	1	0	0	0	0	1	0	0	0	220	17	2	2	1481	4	3
TP53	7157	broad.mit.edu	37	17	7578514	7578514	+	Frame_Shift_Del	DEL	T	-	-			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Frame_Shift_Del	DEL	7578514	7578514	TP53	17	T	-	-	-	1	0	1	0	1	0	0	0	0	728	56	5	5	16226	9	3
TP53	7157	broad.mit.edu	37	17	7579373	7579373	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4398-01A-01D-1265-08	TCGA-05-4398-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4398-TP	Broad	Missense_Mutation	SNP	7579373	7579373	TP53	17	C	T	T	T	1	0	0	0	0	1	0	0	0	338	26	3	3	16226	11	3
PTEN	5728	broad.mit.edu	37	10	89711906	89711906	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z032-TP	Broad	Missense_Mutation	SNP	89711906	89711906	PTEN	10	T	A	A	A	1	0	0	0	0	1	0	0	0	767	59	4	4	12603	62	3
TP53	7157	broad.mit.edu	37	17	7579582	7579583	+	Frame_Shift_Ins	INS	-	A	A	rs121912661		TCGA-17-Z043-01A-01W-0746-08	TCGA-17-Z043-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z043-TP	Broad	Frame_Shift_Ins	INS	7579582	7579583	TP53	17	-	A	A	A	1	0	1	1	0	0	0	0	0	324	25	5	5	16226	72	3
TSHR	7253	broad.mit.edu	37	14	81610368	81610368	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z045-TP	Broad	Missense_Mutation	SNP	81610368	81610368	TSHR	14	G	A	A	A	1	0	0	0	0	1	0	0	0	624	48	3	3	16467	74	3
NF1	4763	broad.mit.edu	37	17	29527461	29527461	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z055-TP	Broad	Nonsense_Mutation	SNP	29527461	29527461	NF1	17	C	T	T	T	1	0	0	0	0	0	1	0	0	243	19	5	3	10240	84	3
NF2	4771	broad.mit.edu	37	22	30077432	30077432	+	Missense_Mutation	SNP	G	C	C	rs74315505		TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-4486-TP	Broad	Missense_Mutation	SNP	30077432	30077432	NF2	22	G	C	C	C	1	0	0	0	0	1	0	0	0	533	41	3	3	10241	132	3
STK11	6794	broad.mit.edu	37	19	1207120	1207120	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-4487-01A-21D-1855-08	TCGA-49-4487-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-4487-TP	Broad	Nonsense_Mutation	SNP	1207120	1207120	STK11	19	G	T	T	T	1	0	0	0	0	0	1	0	0	533	41	5	2	15139	133	3
HNF1A	6927	broad.mit.edu	37	12	121426785	121426785	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-6743-TP	Broad	Missense_Mutation	SNP	121426785	121426785	HNF1A	12	G	T	T	T	1	0	0	0	0	1	0	0	0	507	39	1	1	7159	145	3
APC	324	broad.mit.edu	37	5	112111325	112111325	+	Splice_Site	SNP	G	T	T			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5049-TP	Broad	Splice_Site	SNP	112111325	112111325	APC	5	G	T	T	T	1	0	0	0	0	0	0	1	0	455	35	5	2	754	151	3
GEN1	348654	broad.mit.edu	37	2	17953925	17953925	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5941-TP	Broad	Missense_Mutation	SNP	17953925	17953925	GEN1	2	A	G	G	G	1	0	0	0	0	1	0	0	0	52	4	4	4	6260	164	3
STK11	6794	broad.mit.edu	37	19	1220629	1220629	+	Missense_Mutation	SNP	C	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-55-1596-TP	Broad	Missense_Mutation	SNP	1220629	1220629	STK11	19	C	T	T	T	1	0	0	0	0	1	0	0	0	390	30	3	3	15139	178	3
ATM	472	broad.mit.edu	37	11	108205768	108205768	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4390-TP	Broad	Missense_Mutation	SNP	108205768	108205768	ATM	11	G	A	A	A	1	0	0	0	0	1	0	0	0	455	35	3	3	1098	7	2
FBXW7	55294	broad.mit.edu	37	4	153247225	153247225	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	153247225	153247225	FBXW7	4	C	A	A	A	1	0	0	0	0	1	0	0	0	273	21	2	2	5706	9	2
MEN1	4221	broad.mit.edu	37	11	64571924	64571924	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Nonsense_Mutation	SNP	64571924	64571924	MEN1	11	G	T	T	T	1	0	0	0	0	0	1	0	0	481	37	5	1	9362	9	2
PTCH1	5727	broad.mit.edu	37	9	98248147	98248147	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	98248147	98248147	PTCH1	9	C	A	A	A	1	0	0	0	0	1	0	0	0	403	31	1	1	12595	9	2
EGFR	1956	broad.mit.edu	37	7	55242480	55242503	+	In_Frame_Del	DEL	AACATCTCCGAAAGCCAACAAGGA	-	-	rs121913463		TCGA-05-4402-01A-01D-1265-08	TCGA-05-4402-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4402-TP	Broad	In_Frame_Del	DEL	55242480	55242503	EGFR	7	AACATCTCCGAAAGCCAACAAGGA	-	-	-	1	0	1	0	1	0	0	0	0	54	5	5	5	4915	12	2
ATM	472	broad.mit.edu	37	11	108218090	108218090	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4417-TP	Broad	Missense_Mutation	SNP	108218090	108218090	ATM	11	T	G	G	G	1	0	0	0	0	1	0	0	0	689	53	4	4	1098	17	2
KSR2	283455	broad.mit.edu	37	12	118020147	118020147	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4424-TP	Broad	Missense_Mutation	SNP	118020147	118020147	KSR2	12	G	A	A	A	1	0	0	0	0	1	0	0	0	520	40	3	3	8482	21	2
NF2	4771	broad.mit.edu	37	22	30035169	30035169	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4434-01A-01D-1265-08	TCGA-05-4434-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4434-TP	Broad	Nonsense_Mutation	SNP	30035169	30035169	NF2	22	C	T	T	T	1	0	0	0	0	0	1	0	0	377	29	5	3	10241	28	2
SMAD4	4089	broad.mit.edu	37	18	48604655	48604655	+	Missense_Mutation	SNP	G	A	A	rs121912578		TCGA-05-5429-01A-01D-1625-08	TCGA-05-5429-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-5429-TP	Broad	Missense_Mutation	SNP	48604655	48604655	SMAD4	18	G	A	A	A	1	0	0	0	0	1	0	0	0	585	45	3	3	14615	33	2
ERBB2	2064	broad.mit.edu	37	17	37868208	37868208	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z012-TP	Broad	Missense_Mutation	SNP	37868208	37868208	ERBB2	17	C	A	A	A	1	0	0	0	0	1	0	0	0	390	30	2	2	5154	45	2
CFL2	1073	broad.mit.edu	37	14	35182632	35182632	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z015-TP	Broad	Missense_Mutation	SNP	35182632	35182632	CFL2	14	T	A	A	A	1	0	0	0	0	1	0	0	0	676	52	4	4	3252	48	2
KCNA5	3741	broad.mit.edu	37	12	5154211	5154211	+	Missense_Mutation	SNP	G	A	A	rs148708451	byFrequency	TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z016-TP	Broad	Missense_Mutation	SNP	5154211	5154211	KCNA5	12	G	A	A	A	1	0	0	0	0	1	0	0	0	507	39	3	3	7909	49	2
NF1	4763	broad.mit.edu	37	17	29548866	29548866	+	Splice_Site	SNP	A	T	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z044-TP	Broad	Splice_Site	SNP	29548866	29548866	NF1	17	A	T	T	T	1	0	0	0	0	0	0	1	0	91	7	5	4	10240	73	2
VCPIP1	80124	broad.mit.edu	37	8	67579088	67579089	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z050-01A-01W-0747-08	TCGA-17-Z050-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z050-TP	Broad	Frame_Shift_Ins	INS	67579088	67579089	VCPIP1	8	-	C	C	C	1	0	1	1	0	0	0	0	0	442	34	5	5	16986	79	2
SMAD4	4089	broad.mit.edu	37	18	48591909	48591909	+	Nonsense_Mutation	SNP	G	T	T	rs121912576		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-38-4625-TP	Broad	Nonsense_Mutation	SNP	48591909	48591909	SMAD4	18	G	T	T	T	1	0	0	0	0	0	1	0	0	611	47	5	2	14615	96	2
EGFR	1956	broad.mit.edu	37	7	55210075	55210075	+	Missense_Mutation	SNP	T	G	G			TCGA-38-4627-01A-01D-1553-08	TCGA-38-4627-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-38-4627-TP	Broad	Missense_Mutation	SNP	55210075	55210075	EGFR	7	T	G	G	G	1	0	0	0	0	1	0	0	0	728	56	4	4	4915	98	2
ERBB2	2064	broad.mit.edu	37	17	37868208	37868208	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-2656-TP	Broad	Missense_Mutation	SNP	37868208	37868208	ERBB2	17	C	C	T	T	1	0	0	0	0	1	0	0	0	390	30	3	3	5154	106	2
SMAD4	4089	broad.mit.edu	37	18	48575671	48575671	+	Nonsense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-2662-TP	Broad	Nonsense_Mutation	SNP	48575671	48575671	SMAD4	18	C	C	G	G	1	0	0	0	0	0	1	0	0	377	29	5	3	14615	110	2
AKAP4	8852	broad.mit.edu	37	X	49958170	49958170	+	Missense_Mutation	SNP	C	A	A			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-3918-TP	Broad	Missense_Mutation	SNP	49958170	49958170	AKAP4	23	C	A	A	A	1	0	0	0	0	1	0	0	0	377	29	2	2	452	116	2
TP53	7157	broad.mit.edu	37	17	7574034	7574034	+	Splice_Site	SNP	C	A	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-6145-TP	Broad	Splice_Site	SNP	7574034	7574034	TP53	17	C	C	A	A	1	0	0	0	0	0	0	1	0	416	32	5	2	16226	122	2
STK11	6794	broad.mit.edu	37	19	1220640	1220640	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-6776-01A-11D-1855-08	TCGA-44-6776-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-6776-TP	Broad	Nonsense_Mutation	SNP	1220640	1220640	STK11	19	C	C	T	T	1	0	0	0	0	0	1	0	0	273	21	5	3	15139	128	2
STK11	6794	broad.mit.edu	37	19	1220685	1220685	+	Nonsense_Mutation	SNP	A	T	T			TCGA-44-6779-01A-11D-1855-08	TCGA-44-6779-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-6779-TP	Broad	Nonsense_Mutation	SNP	1220685	1220685	STK11	19	A	A	T	T	1	0	0	0	0	0	1	0	0	65	5	5	4	15139	131	2
NF1	4763	broad.mit.edu	37	17	29661894	29661894	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-5068-01A-01D-1625-08	TCGA-50-5068-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5068-TP	Broad	Frame_Shift_Del	DEL	29661894	29661894	NF1	17	C	-	-	-	1	0	1	0	1	0	0	0	0	390	30	5	5	10240	155	2
TP53	7157	broad.mit.edu	37	17	7579471	7579471	+	Frame_Shift_Del	DEL	G	-	-	rs56275308		TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5941-TP	Broad	Frame_Shift_Del	DEL	7579471	7579471	TP53	17	G	-	-	-	1	0	1	0	1	0	0	0	0	496	39	5	5	16226	164	2
STK11	6794	broad.mit.edu	37	19	1220706	1220706	+	Missense_Mutation	SNP	G	T	T			TCGA-55-1596-01A-01D-1040-01	TCGA-55-1596-11A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-55-1596-TP	Broad	Missense_Mutation	SNP	1220706	1220706	STK11	19	G	T	T	T	1	0	0	0	0	1	0	0	0	611	47	2	2	15139	178	2
ATM	472	broad.mit.edu	37	11	108205768	108205768	+	Missense_Mutation	SNP	G	T	T			TCGA-55-6642-01A-11D-1855-08	TCGA-55-6642-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-55-6642-TP	Broad	Missense_Mutation	SNP	108205768	108205768	ATM	11	G	T	T	T	1	0	0	0	0	1	0	0	0	455	35	2	2	1098	181	2
TP53	7157	broad.mit.edu	37	17	7579471	7579471	+	Frame_Shift_Del	DEL	G	-	-	rs56275308		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-91-6829-TP	Broad	Frame_Shift_Del	DEL	7579471	7579471	TP53	17	G	-	-	-	1	0	1	0	1	0	0	0	0	496	39	5	5	16226	226	2
APC	324	broad.mit.edu	37	5	112175975	112175975	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4382-TP	Broad	Missense_Mutation	SNP	112175975	112175975	APC	5	G	A	A	A	1	0	0	0	0	1	0	0	0	533	41	3	3	754	4	1
GIMAP1	170575	broad.mit.edu	37	7	150417496	150417496	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4382-TP	Broad	Missense_Mutation	SNP	150417496	150417496	GIMAP1	7	T	A	A	A	1	0	0	0	0	1	0	0	0	767	59	4	4	6303	4	1
SMC2	10592	broad.mit.edu	37	9	106889740	106889740	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4382-01A-01D-1265-08	TCGA-05-4382-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4382-TP	Broad	Missense_Mutation	SNP	106889740	106889740	SMC2	9	G	T	T	T	1	0	0	0	0	1	0	0	0	451	35	2	2	14638	4	1
TIMELESS	8914	broad.mit.edu	37	12	56814763	56814763	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4390-01A-02D-1753-08	TCGA-05-4390-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4390-TP	Broad	Missense_Mutation	SNP	56814763	56814763	TIMELESS	12	T	A	A	A	1	0	0	0	0	1	0	0	0	829	64	4	4	15752	7	1
APBB1IP	54518	broad.mit.edu	37	10	26825106	26825106	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	26825106	26825106	APBB1IP	10	G	T	T	T	1	0	0	0	0	1	0	0	0	507	39	1	1	751	9	1
BAP1	8314	broad.mit.edu	37	3	52441448	52441448	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	52441448	52441448	BAP1	3	G	T	T	T	1	0	0	0	0	1	0	0	0	507	39	1	1	1298	9	1
C2orf44	80304	broad.mit.edu	37	2	24261004	24261004	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	24261004	24261004	C2orf44	2	G	T	T	T	1	0	0	0	0	1	0	0	0	507	39	1	1	2143	9	1
CNOT7	29883	broad.mit.edu	37	8	17090006	17090006	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	17090006	17090006	CNOT7	8	C	A	A	A	1	0	0	0	0	1	0	0	0	299	23	1	1	3582	9	1
CSNK1E	1454	broad.mit.edu	37	22	38689301	38689301	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	38689301	38689301	CSNK1E	22	C	A	A	A	1	0	0	0	0	1	0	0	0	299	23	1	1	3911	9	1
FBXO40	51725	broad.mit.edu	37	3	121340508	121340508	+	Missense_Mutation	SNP	C	A	A	rs137929409		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	121340508	121340508	FBXO40	3	C	A	A	A	1	0	0	0	0	1	0	0	0	299	23	1	1	5686	9	1
FOXP1	27086	broad.mit.edu	37	3	71015122	71015122	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	71015122	71015122	FOXP1	3	C	A	A	A	1	0	0	0	0	1	0	0	0	299	23	1	1	5959	9	1
GDF11	10220	broad.mit.edu	37	12	56143376	56143376	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	56143376	56143376	GDF11	12	C	A	A	A	1	0	0	0	0	1	0	0	0	299	23	1	1	6237	9	1
HIPK2	28996	broad.mit.edu	37	7	139311473	139311473	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	139311473	139311473	HIPK2	7	C	A	A	A	1	0	0	0	0	1	0	0	0	299	23	1	1	7025	9	1
IKZF3	22806	broad.mit.edu	37	17	37947753	37947753	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	37947753	37947753	IKZF3	17	C	A	A	A	1	0	0	0	0	1	0	0	0	312	24	2	2	7521	9	1
ITGAD	3681	broad.mit.edu	37	16	31427905	31427905	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Nonsense_Mutation	SNP	31427905	31427905	ITGAD	16	G	T	T	T	1	0	0	0	0	0	1	0	0	507	39	5	1	7788	9	1
LEF1	51176	broad.mit.edu	37	4	109084801	109084801	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	109084801	109084801	LEF1	4	C	A	A	A	1	0	0	0	0	1	0	0	0	299	23	1	1	8612	9	1
LRP1B	53353	broad.mit.edu	37	2	141264383	141264383	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	141264383	141264383	LRP1B	2	C	T	T	T	1	0	0	0	0	1	0	0	0	377	29	3	3	8849	9	1
LRP1B	53353	broad.mit.edu	37	2	141473606	141473606	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	141473606	141473606	LRP1B	2	G	T	T	T	1	0	0	0	0	1	0	0	0	507	39	1	1	8849	9	1
NOTCH2	4853	broad.mit.edu	37	1	120457987	120457987	+	Missense_Mutation	SNP	C	A	A	rs145366664		TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	120457987	120457987	NOTCH2	1	C	A	A	A	1	0	0	0	0	1	0	0	0	299	23	1	1	10430	9	1
PTPLA	9200	broad.mit.edu	37	10	17636294	17636294	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Nonsense_Mutation	SNP	17636294	17636294	PTPLA	10	C	A	A	A	1	0	0	0	0	0	1	0	0	312	24	5	2	12639	9	1
RAF1	5894	broad.mit.edu	37	3	12641688	12641688	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	12641688	12641688	RAF1	3	C	A	A	A	1	0	0	0	0	1	0	0	0	299	23	1	1	12867	9	1
SMC2	10592	broad.mit.edu	37	9	106889736	106889736	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	106889736	106889736	SMC2	9	G	T	T	T	1	0	0	0	0	1	0	0	0	507	39	1	1	14638	9	1
TMEM74	157753	broad.mit.edu	37	8	109797038	109797038	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	109797038	109797038	TMEM74	8	C	A	A	A	1	0	0	0	0	1	0	0	0	299	23	1	1	16047	9	1
TTN	7273	broad.mit.edu	37	2	179641600	179641600	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4396-01A-21D-1855-08	TCGA-05-4396-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4396-TP	Broad	Missense_Mutation	SNP	179641600	179641600	TTN	2	C	A	A	A	1	0	0	0	0	1	0	0	0	299	23	1	1	16580	9	1
KCNA4	3739	broad.mit.edu	37	11	30034042	30034042	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4397-TP	Broad	Missense_Mutation	SNP	30034042	30034042	KCNA4	11	G	T	T	T	1	0	0	0	0	1	0	0	0	611	47	2	2	7908	10	1
PPIG	9360	broad.mit.edu	37	2	170489708	170489708	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4397-TP	Broad	Missense_Mutation	SNP	170489708	170489708	PPIG	2	G	C	C	C	1	0	0	0	0	1	0	0	0	481	37	3	3	12193	10	1
LMTK2	22853	broad.mit.edu	37	7	97800896	97800896	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4405-01A-21D-1855-08	TCGA-05-4405-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4405-TP	Broad	Frame_Shift_Del	DEL	97800896	97800896	LMTK2	7	G	-	-	-	1	0	1	0	1	0	0	0	0	507	39	5	5	8758	14	1
CDH4	1002	broad.mit.edu	37	20	60348144	60348144	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4410-TP	Broad	Missense_Mutation	SNP	60348144	60348144	CDH4	20	C	G	G	G	1	0	0	0	0	1	0	0	0	338	26	3	3	3079	15	1
ITGB3	3690	broad.mit.edu	37	17	45376866	45376867	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-05-4410-01A-21D-1855-08	TCGA-05-4410-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4410-TP	Broad	Missense_Mutation	DNP	45376866	45376867	ITGB3	17	CC	AA	AA	AA	1	0	0	0	0	1	0	0	0	286	22	2	2	7799	15	1
RB1	5925	broad.mit.edu	37	13	49039189	49039189	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4415-01A-22D-1855-08	TCGA-05-4415-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4415-TP	Broad	Missense_Mutation	SNP	49039189	49039189	RB1	13	A	G	G	G	1	0	0	0	0	1	0	0	0	208	16	4	4	12963	16	1
CDK5	1020	broad.mit.edu	37	7	150754239	150754239	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4417-TP	Broad	Nonsense_Mutation	SNP	150754239	150754239	CDK5	7	C	A	A	A	1	0	0	0	0	0	1	0	0	299	23	5	1	3108	17	1
PKHD1	5314	broad.mit.edu	37	6	51882392	51882392	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4422-01A-01D-1265-08	TCGA-05-4422-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4422-TP	Broad	Nonsense_Mutation	SNP	51882392	51882392	PKHD1	6	C	A	A	A	1	0	0	0	0	0	1	0	0	390	30	5	2	11844	20	1
C12orf12	196477	broad.mit.edu	37	12	91348087	91348087	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4424-TP	Broad	Missense_Mutation	SNP	91348087	91348087	C12orf12	12	G	A	A	A	1	0	0	0	0	1	0	0	0	507	39	3	3	1660	21	1
CDH23	64072	broad.mit.edu	37	10	73464725	73464725	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4424-TP	Broad	Missense_Mutation	SNP	73464725	73464725	CDH23	10	G	T	T	T	1	0	0	0	0	1	0	0	0	572	44	2	2	3075	21	1
GRM1	2911	broad.mit.edu	37	6	146720225	146720225	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4426-01A-01D-1265-08	TCGA-05-4426-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4426-TP	Broad	Missense_Mutation	SNP	146720225	146720225	GRM1	6	C	T	T	T	1	0	0	0	0	1	0	0	0	247	19	3	3	6712	23	1
DRD3	1814	broad.mit.edu	37	3	113850212	113850212	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4427-TP	Broad	Missense_Mutation	SNP	113850212	113850212	DRD3	3	C	G	G	G	1	0	0	0	0	1	0	0	0	363	28	3	3	4706	24	1
MMP16	4325	broad.mit.edu	37	8	89180170	89180170	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4427-01A-21D-1855-08	TCGA-05-4427-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4427-TP	Broad	Missense_Mutation	SNP	89180170	89180170	MMP16	8	G	T	T	T	1	0	0	0	0	1	0	0	0	455	35	2	2	9544	24	1
MAPK7	5598	broad.mit.edu	37	17	19285382	19285382	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4430-01A-02D-1265-08	TCGA-05-4430-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-4430-TP	Broad	Missense_Mutation	SNP	19285382	19285382	MAPK7	17	C	G	G	G	1	0	0	0	0	1	0	0	0	312	24	3	3	9172	25	1
MMP3	4314	broad.mit.edu	37	11	102709964	102709964	+	Missense_Mutation	SNP	G	A	A	rs147533686	by1000genomes	TCGA-05-5423-01A-01D-1625-08	TCGA-05-5423-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-5423-TP	Broad	Missense_Mutation	SNP	102709964	102709964	MMP3	11	G	A	A	A	1	0	0	0	0	1	0	0	0	494	38	3	3	9555	30	1
EPHB6	2051	broad.mit.edu	37	7	142565423	142565423	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-05-5428-TP	Broad	Missense_Mutation	SNP	142565423	142565423	EPHB6	7	C	G	G	G	1	0	0	0	0	1	0	0	0	364	28	3	3	5126	32	1
UNC45B	146862	broad.mit.edu	37	17	33496891	33496891	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z001-TP	Broad	Missense_Mutation	SNP	33496891	33496891	UNC45B	17	C	G	G	G	1	0	0	0	0	1	0	0	0	259	20	3	3	16834	36	1
LRP1B	53353	broad.mit.edu	37	2	141027875	141027875	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z003-01A-01W-0746-08	TCGA-17-Z003-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z003-TP	Broad	Missense_Mutation	SNP	141027875	141027875	LRP1B	2	C	A	A	A	1	0	0	0	0	1	0	0	0	377	29	2	2	8849	37	1
LRP1B	53353	broad.mit.edu	37	2	141027872	141027873	+	Missense_Mutation	DNP	CA	AT	AT			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z005-TP	Broad	Missense_Mutation	DNP	141027872	141027873	LRP1B	2	CA	AT	AT	AT	1	0	0	0	0	1	0	0	0	273	21	2	2	8849	39	1
BRAF	673	broad.mit.edu	37	7	140482873	140482873	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z008-TP	Broad	Missense_Mutation	SNP	140482873	140482873	BRAF	7	C	A	A	A	1	0	0	0	0	1	0	0	0	390	30	2	2	1481	41	1
ERAS	3266	broad.mit.edu	37	X	48688026	48688026	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z008-TP	Broad	Missense_Mutation	SNP	48688026	48688026	ERAS	23	G	T	T	T	1	0	0	0	0	1	0	0	0	494	38	1	1	5153	41	1
IGF1R	3480	broad.mit.edu	37	15	99440124	99440124	+	Missense_Mutation	SNP	C	G	G	rs149559330		TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z008-TP	Broad	Missense_Mutation	SNP	99440124	99440124	IGF1R	15	C	G	G	G	1	0	0	0	0	1	0	0	0	382	30	3	3	7478	41	1
MAP3K4	4216	broad.mit.edu	37	6	161470818	161470818	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z008-TP	Broad	Missense_Mutation	SNP	161470818	161470818	MAP3K4	6	G	T	T	T	1	0	0	0	0	1	0	0	0	546	42	2	2	9143	41	1
NKRF	55922	broad.mit.edu	37	X	118724465	118724465	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z008-TP	Broad	Missense_Mutation	SNP	118724465	118724465	NKRF	23	G	T	T	T	1	0	0	0	0	1	0	0	0	455	35	2	2	10331	41	1
NTRK1	4914	broad.mit.edu	37	1	156834171	156834171	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z008-TP	Broad	Nonsense_Mutation	SNP	156834171	156834171	NTRK1	1	C	T	T	T	1	0	0	0	0	0	1	0	0	325	25	5	3	10588	41	1
STK10	6793	broad.mit.edu	37	5	171481638	171481638	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z008-TP	Broad	Missense_Mutation	SNP	171481638	171481638	STK10	5	C	G	G	G	1	0	0	0	0	1	0	0	0	403	31	3	3	15138	41	1
TEK	7010	broad.mit.edu	37	9	27203075	27203075	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z008-TP	Broad	Missense_Mutation	SNP	27203075	27203075	TEK	9	C	A	A	A	1	0	0	0	0	1	0	0	0	286	22	2	2	15599	41	1
VEGFC	7424	broad.mit.edu	37	4	177608587	177608587	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z008-01A-01W-0746-08	TCGA-17-Z008-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z008-TP	Broad	Missense_Mutation	SNP	177608587	177608587	VEGFC	4	C	A	A	A	1	0	0	0	0	1	0	0	0	299	23	1	1	16997	41	1
PEX5L	51555	broad.mit.edu	37	3	179592167	179592167	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z012-TP	Broad	Missense_Mutation	SNP	179592167	179592167	PEX5L	3	C	T	T	T	1	0	0	0	0	1	0	0	0	364	28	3	3	11623	45	1
ATM	472	broad.mit.edu	37	11	108205807	108205807	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z014-TP	Broad	Missense_Mutation	SNP	108205807	108205807	ATM	11	G	A	A	A	1	0	0	0	0	1	0	0	0	481	37	3	3	1098	47	1
CDC42BPA	8476	broad.mit.edu	37	1	227333438	227333438	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z014-TP	Broad	Missense_Mutation	SNP	227333438	227333438	CDC42BPA	1	C	G	G	G	1	0	0	0	0	1	0	0	0	390	30	3	3	3039	47	1
PDGFRA	5156	broad.mit.edu	37	4	55141092	55141092	+	Missense_Mutation	SNP	C	A	A	rs143003840		TCGA-17-Z014-01A-01W-0746-08	TCGA-17-Z014-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z014-TP	Broad	Missense_Mutation	SNP	55141092	55141092	PDGFRA	4	C	A	A	A	1	0	0	0	0	1	0	0	0	363	28	2	2	11535	47	1
COL19A1	1310	broad.mit.edu	37	6	70744137	70744137	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z015-01A-01W-0746-08	TCGA-17-Z015-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z015-TP	Broad	Missense_Mutation	SNP	70744137	70744137	COL19A1	6	G	T	T	T	1	0	0	0	0	1	0	0	0	559	43	2	2	3634	48	1
ATM	472	broad.mit.edu	37	11	108143552	108143552	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z016-TP	Broad	Missense_Mutation	SNP	108143552	108143552	ATM	11	G	T	T	T	1	0	0	0	0	1	0	0	0	494	38	1	1	1098	49	1
CDH11	1009	broad.mit.edu	37	16	65026938	65026938	+	Splice_Site	SNP	C	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z016-TP	Broad	Splice_Site	SNP	65026938	65026938	CDH11	16	C	A	A	A	1	0	0	0	0	0	0	1	0	312	24	5	2	3064	49	1
EPHA5	2044	broad.mit.edu	37	4	66189926	66189926	+	Missense_Mutation	SNP	C	T	T	rs145811811		TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z016-TP	Broad	Missense_Mutation	SNP	66189926	66189926	EPHA5	4	C	T	T	T	1	0	0	0	0	1	0	0	0	299	23	3	3	5118	49	1
JAK3	3718	broad.mit.edu	37	19	17949164	17949164	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z016-TP	Broad	Missense_Mutation	SNP	17949164	17949164	JAK3	19	T	A	A	A	1	0	0	0	0	1	0	0	0	715	55	4	4	7843	49	1
MYBL2	4605	broad.mit.edu	37	20	42331376	42331376	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z016-TP	Broad	Missense_Mutation	SNP	42331376	42331376	MYBL2	20	G	T	T	T	1	0	0	0	0	1	0	0	0	559	43	2	2	9897	49	1
NTRK2	4915	broad.mit.edu	37	9	87549120	87549120	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z016-01A-01W-0746-08	TCGA-17-Z016-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z016-TP	Broad	Missense_Mutation	SNP	87549120	87549120	NTRK2	9	G	C	C	C	1	0	0	0	0	1	0	0	0	438	34	3	3	10589	49	1
CCNG1	900	broad.mit.edu	37	5	162869132	162869132	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z017-TP	Broad	Missense_Mutation	SNP	162869132	162869132	CCNG1	5	C	T	T	T	1	0	0	0	0	1	0	0	0	416	32	3	3	2890	50	1
RASSF2	9770	broad.mit.edu	37	20	4771116	4771116	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z017-TP	Broad	Missense_Mutation	SNP	4771116	4771116	RASSF2	20	C	A	A	A	1	0	0	0	0	1	0	0	0	338	26	2	2	12951	50	1
ROR2	4920	broad.mit.edu	37	9	94486414	94486414	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z017-TP	Broad	Missense_Mutation	SNP	94486414	94486414	ROR2	9	C	A	A	A	1	0	0	0	0	1	0	0	0	286	22	2	2	13385	50	1
STYK1	55359	broad.mit.edu	37	12	10772762	10772762	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z017-01A-01W-0746-08	TCGA-17-Z017-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z017-TP	Broad	Missense_Mutation	SNP	10772762	10772762	STYK1	12	T	C	C	C	1	0	0	0	0	1	0	0	0	741	57	4	4	15211	50	1
PRKD3	23683	broad.mit.edu	37	2	37516584	37516584	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z020-01A-01W-0746-08	TCGA-17-Z020-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z020-TP	Broad	Missense_Mutation	SNP	37516584	37516584	PRKD3	2	C	T	T	T	1	0	0	0	0	1	0	0	0	247	19	3	3	12385	52	1
LRP1B	53353	broad.mit.edu	37	2	141665553	141665553	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z021-01A-01W-0746-08	TCGA-17-Z021-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z021-TP	Broad	Missense_Mutation	SNP	141665553	141665553	LRP1B	2	G	T	T	T	1	0	0	0	0	1	0	0	0	611	47	2	2	8849	53	1
MCF2L2	23101	broad.mit.edu	37	3	182948805	182948805	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z022-TP	Broad	Missense_Mutation	SNP	182948805	182948805	MCF2L2	3	C	A	A	A	1	0	0	0	0	1	0	0	0	337	26	2	2	9270	54	1
NOS3	4846	broad.mit.edu	37	7	150698505	150698505	+	Missense_Mutation	SNP	C	G	G	rs145805216		TCGA-17-Z022-01A-01W-0746-08	TCGA-17-Z022-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z022-TP	Broad	Missense_Mutation	SNP	150698505	150698505	NOS3	7	C	G	G	G	1	0	0	0	0	1	0	0	0	299	23	3	3	10426	54	1
CDC73	79577	broad.mit.edu	37	1	193110980	193110980	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z023-TP	Broad	Missense_Mutation	SNP	193110980	193110980	CDC73	1	G	T	T	T	1	0	0	0	0	1	0	0	0	568	44	2	2	3052	55	1
TP53	7157	broad.mit.edu	37	17	7578257	7578258	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-17-Z023-01A-01W-0746-08	TCGA-17-Z023-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z023-TP	Broad	Nonsense_Mutation	DNP	7578257	7578258	TP53	17	CC	AA	AA	AA	1	0	0	0	0	0	1	0	0	390	30	5	2	16226	55	1
FLT1	2321	broad.mit.edu	37	13	28895700	28895700	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z025-TP	Broad	Missense_Mutation	SNP	28895700	28895700	FLT1	13	G	C	C	C	1	0	0	0	0	1	0	0	0	494	38	3	3	5876	56	1
WISP1	8840	broad.mit.edu	37	8	134237689	134237689	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z025-TP	Broad	Missense_Mutation	SNP	134237689	134237689	WISP1	8	T	A	A	A	1	0	0	0	0	1	0	0	0	715	55	4	4	17216	56	1
EPHA3	2042	broad.mit.edu	37	3	89480446	89480446	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z026-TP	Broad	Missense_Mutation	SNP	89480446	89480446	EPHA3	3	G	T	T	T	1	0	0	0	0	1	0	0	0	451	35	2	2	5116	57	1
EPHB1	2047	broad.mit.edu	37	3	134851763	134851763	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z026-TP	Broad	Missense_Mutation	SNP	134851763	134851763	EPHB1	3	G	T	T	T	1	0	0	0	0	1	0	0	0	494	38	1	1	5122	57	1
LRP1B	53353	broad.mit.edu	37	2	141459407	141459407	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z026-TP	Broad	Missense_Mutation	SNP	141459407	141459407	LRP1B	2	C	A	A	A	1	0	0	0	0	1	0	0	0	325	25	2	2	8849	57	1
MRE11A	4361	broad.mit.edu	37	11	94204877	94204877	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z026-01A-01W-0746-08	TCGA-17-Z026-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z026-TP	Broad	Missense_Mutation	SNP	94204877	94204877	MRE11A	11	G	C	C	C	1	0	0	0	0	1	0	0	0	464	36	3	3	9646	57	1
CDK14	5218	broad.mit.edu	37	7	90741857	90741857	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z028-TP	Broad	Missense_Mutation	SNP	90741857	90741857	CDK14	7	G	C	C	C	1	0	0	0	0	1	0	0	0	542	42	3	3	3096	59	1
EPHA7	2045	broad.mit.edu	37	6	93965714	93965714	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z028-TP	Broad	Missense_Mutation	SNP	93965714	93965714	EPHA7	6	C	A	A	A	1	0	0	0	0	1	0	0	0	325	25	2	2	5120	59	1
NF1	4763	broad.mit.edu	37	17	29657349	29657349	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z028-TP	Broad	Missense_Mutation	SNP	29657349	29657349	NF1	17	G	T	T	T	1	0	0	0	0	1	0	0	0	624	48	2	2	10240	59	1
NF1	4763	broad.mit.edu	37	17	29657351	29657351	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z028-TP	Broad	Missense_Mutation	SNP	29657351	29657351	NF1	17	A	C	C	C	1	0	0	0	0	1	0	0	0	182	14	4	4	10240	59	1
PRKAR1A	5573	broad.mit.edu	37	17	66518895	66518896	+	Splice_Site	DNP	AG	TT	TT			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z028-TP	Broad	Splice_Site	DNP	66518895	66518896	PRKAR1A	17	AG	TT	TT	TT	1	0	0	0	0	0	0	1	0	91	7	5	4	12368	59	1
PRKCG	5582	broad.mit.edu	37	19	54403989	54403989	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z028-01A-01W-0746-08	TCGA-17-Z028-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z028-TP	Broad	Missense_Mutation	SNP	54403989	54403989	PRKCG	19	T	A	A	A	1	0	0	0	0	1	0	0	0	689	53	4	4	12377	59	1
DCAF6	55827	broad.mit.edu	37	1	168014281	168014281	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z030-01A-01W-0746-08	TCGA-17-Z030-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z030-TP	Broad	Missense_Mutation	SNP	168014281	168014281	DCAF6	1	A	G	G	G	1	0	0	0	0	1	0	0	0	195	15	4	4	4226	60	1
BCAR1	9564	broad.mit.edu	37	16	75263684	75263684	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z031-TP	Broad	Missense_Mutation	SNP	75263684	75263684	BCAR1	16	C	A	A	A	1	0	0	0	0	1	0	0	0	338	26	2	2	1334	61	1
LMO7	4008	broad.mit.edu	37	13	76393660	76393660	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z031-TP	Broad	Missense_Mutation	SNP	76393660	76393660	LMO7	13	G	T	T	T	1	0	0	0	0	1	0	0	0	598	46	2	2	8754	61	1
PRKAA1	5562	broad.mit.edu	37	5	40798243	40798243	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z031-TP	Broad	Missense_Mutation	SNP	40798243	40798243	PRKAA1	5	T	C	C	C	1	0	0	0	0	1	0	0	0	806	62	4	4	12358	61	1
RB1	5925	broad.mit.edu	37	13	48941739	48941739	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z031-01A-01W-0746-08	TCGA-17-Z031-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z031-TP	Broad	Missense_Mutation	SNP	48941739	48941739	RB1	13	G	T	T	T	1	0	0	0	0	1	0	0	0	455	35	2	2	12963	61	1
ACVR1B	91	broad.mit.edu	37	12	52377796	52377796	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z032-TP	Broad	Nonsense_Mutation	SNP	52377796	52377796	ACVR1B	12	G	A	A	A	1	0	0	0	0	0	1	0	0	533	41	5	3	221	62	1
GATA1	2623	broad.mit.edu	37	X	48650256	48650256	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z032-TP	Broad	Missense_Mutation	SNP	48650256	48650256	GATA1	23	C	G	G	G	1	0	0	0	0	1	0	0	0	377	29	3	3	6178	62	1
IKBKB	3551	broad.mit.edu	37	8	42174363	42174363	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z032-01A-01W-0746-08	TCGA-17-Z032-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z032-TP	Broad	Nonsense_Mutation	SNP	42174363	42174363	IKBKB	8	G	T	T	T	1	0	0	0	0	0	1	0	0	533	41	5	2	7517	62	1
ALK	238	broad.mit.edu	37	2	29541192	29541192	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z036-TP	Broad	Missense_Mutation	SNP	29541192	29541192	ALK	2	G	C	C	C	1	0	0	0	0	1	0	0	0	507	39	3	3	524	65	1
APC	324	broad.mit.edu	37	5	112103015	112103015	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z036-TP	Broad	Missense_Mutation	SNP	112103015	112103015	APC	5	C	T	T	T	1	0	0	0	0	1	0	0	0	377	29	3	3	754	65	1
LATS2	26524	broad.mit.edu	37	13	21549230	21549230	+	Missense_Mutation	SNP	C	T	T	rs113238499		TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z036-TP	Broad	Missense_Mutation	SNP	21549230	21549230	LATS2	13	C	T	T	T	1	0	0	0	0	1	0	0	0	403	31	3	3	8547	65	1
LRP1B	53353	broad.mit.edu	37	2	141245284	141245284	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z036-TP	Broad	Missense_Mutation	SNP	141245284	141245284	LRP1B	2	C	A	A	A	1	0	0	0	0	1	0	0	0	416	32	2	2	8849	65	1
RPTOR	57521	broad.mit.edu	37	17	78704429	78704429	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z036-01A-01W-0746-08	TCGA-17-Z036-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z036-TP	Broad	Missense_Mutation	SNP	78704429	78704429	RPTOR	17	G	A	A	A	1	0	0	0	0	1	0	0	0	520	40	3	3	13523	65	1
AXL	558	broad.mit.edu	37	19	41745202	41745202	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z045-TP	Broad	Missense_Mutation	SNP	41745202	41745202	AXL	19	T	A	A	A	1	0	0	0	0	1	0	0	0	715	55	4	4	1226	74	1
LRP1B	53353	broad.mit.edu	37	2	141773438	141773438	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z045-TP	Broad	Missense_Mutation	SNP	141773438	141773438	LRP1B	2	C	A	A	A	1	0	0	0	0	1	0	0	0	247	19	1	1	8849	74	1
MYO3B	140469	broad.mit.edu	37	2	171240248	171240248	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z045-TP	Broad	Missense_Mutation	SNP	171240248	171240248	MYO3B	2	G	T	T	T	1	0	0	0	0	1	0	0	0	494	38	1	1	9964	74	1
PRKCG	5582	broad.mit.edu	37	19	54392933	54392933	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z045-TP	Broad	Missense_Mutation	SNP	54392933	54392933	PRKCG	19	C	A	A	A	1	0	0	0	0	1	0	0	0	324	25	2	2	12377	74	1
PRKD1	5587	broad.mit.edu	37	14	30066904	30066904	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z045-01A-01W-0746-08	TCGA-17-Z045-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z045-TP	Broad	Missense_Mutation	SNP	30066904	30066904	PRKD1	14	C	A	A	A	1	0	0	0	0	1	0	0	0	260	20	2	2	12383	74	1
MAPK4	5596	broad.mit.edu	37	18	48248352	48248352	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z046-TP	Broad	Missense_Mutation	SNP	48248352	48248352	MAPK4	18	C	A	A	A	1	0	0	0	0	1	0	0	0	286	22	2	2	9170	75	1
MYO3B	140469	broad.mit.edu	37	2	171056660	171056660	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z046-TP	Broad	Missense_Mutation	SNP	171056660	171056660	MYO3B	2	G	T	T	T	1	0	0	0	0	1	0	0	0	533	41	2	2	9964	75	1
PAK3	5063	broad.mit.edu	37	X	110366488	110366488	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z046-TP	Broad	Missense_Mutation	SNP	110366488	110366488	PAK3	23	C	A	A	A	1	0	0	0	0	1	0	0	0	286	22	2	2	11278	75	1
PDGFRB	5159	broad.mit.edu	37	5	149514398	149514398	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z046-TP	Broad	Missense_Mutation	SNP	149514398	149514398	PDGFRB	5	G	C	C	C	1	0	0	0	0	1	0	0	0	421	33	3	3	11536	75	1
PTK2	5747	broad.mit.edu	37	8	141874421	141874421	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z046-TP	Broad	Missense_Mutation	SNP	141874421	141874421	PTK2	8	A	C	C	C	1	0	0	0	0	1	0	0	0	117	9	4	4	12627	75	1
RBL1	5933	broad.mit.edu	37	20	35668595	35668595	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z046-TP	Broad	Missense_Mutation	SNP	35668595	35668595	RBL1	20	C	A	A	A	1	0	0	0	0	1	0	0	0	260	20	2	2	12974	75	1
TNK2	10188	broad.mit.edu	37	3	195594873	195594873	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z046-TP	Broad	Missense_Mutation	SNP	195594873	195594873	TNK2	3	G	C	C	C	1	0	0	0	0	1	0	0	0	494	38	3	3	16163	75	1
YES1	7525	broad.mit.edu	37	18	751704	751704	+	Splice_Site	SNP	C	A	A			TCGA-17-Z046-01A-01W-0746-08	TCGA-17-Z046-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z046-TP	Broad	Splice_Site	SNP	751704	751704	YES1	18	C	A	A	A	1	0	0	0	0	0	0	1	0	247	19	5	1	17318	75	1
APBB1IP	54518	broad.mit.edu	37	10	26800771	26800771	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z051-01A-01W-0747-08	TCGA-17-Z051-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z051-TP	Broad	Missense_Mutation	SNP	26800771	26800771	APBB1IP	10	G	T	T	T	1	0	0	0	0	1	0	0	0	425	33	2	2	751	80	1
DDX23	9416	broad.mit.edu	37	12	49237828	49237828	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z055-TP	Broad	Missense_Mutation	SNP	49237828	49237828	DDX23	12	C	A	A	A	1	0	0	0	0	1	0	0	0	403	31	1	1	4301	84	1
NLGN4X	57502	broad.mit.edu	37	X	5827266	5827266	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z056-01A-01W-0747-08	TCGA-17-Z056-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z056-TP	Broad	Missense_Mutation	SNP	5827266	5827266	NLGN4X	23	C	A	A	A	1	0	0	0	0	1	0	0	0	299	23	1	1	10346	85	1
PSKH2	85481	broad.mit.edu	37	8	87076698	87076698	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z060-01A-01W-0747-08	TCGA-17-Z060-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-17-Z060-TP	Broad	Missense_Mutation	SNP	87076698	87076698	PSKH2	8	G	C	C	C	1	0	0	0	0	1	0	0	0	542	42	3	3	12530	89	1
RAB31	11031	broad.mit.edu	37	18	9814045	9814045	+	Missense_Mutation	SNP	G	A	A			TCGA-35-3615-01A-01D-1040-01	TCGA-35-3615-10A-01D-1489-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-35-3615-TP	Broad	Missense_Mutation	SNP	9814045	9814045	RAB31	18	G	G	A	A	1	0	0	0	0	1	0	0	0	481	37	3	3	12785	92	1
LTBP1	4052	broad.mit.edu	37	2	33590483	33590483	+	Missense_Mutation	SNP	G	C	C			TCGA-35-4123-01A-01D-1105-08	TCGA-35-4123-10A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-35-4123-TP	Broad	Missense_Mutation	SNP	33590483	33590483	LTBP1	2	G	C	C	C	1	0	0	0	0	1	0	0	0	559	43	3	3	8966	94	1
DSCR6	53820	broad.mit.edu	37	21	38380502	38380502	+	Missense_Mutation	SNP	G	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-35-5375-TP	Broad	Missense_Mutation	SNP	38380502	38380502	DSCR6	21	G	T	T	T	1	0	0	0	0	1	0	0	0	438	34	2	2	4721	95	1
RB1	5925	broad.mit.edu	37	13	48954377	48954377	+	Nonsense_Mutation	SNP	A	T	T			TCGA-35-5375-01A-01D-1625-08	TCGA-35-5375-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-35-5375-TP	Broad	Nonsense_Mutation	SNP	48954377	48954377	RB1	13	A	T	T	T	1	0	0	0	0	0	1	0	0	88	7	5	4	12963	95	1
APOB	338	broad.mit.edu	37	2	21234718	21234718	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-38-4625-TP	Broad	Missense_Mutation	SNP	21234718	21234718	APOB	2	C	G	G	G	1	0	0	0	0	1	0	0	0	363	28	3	3	776	96	1
KRT73	319101	broad.mit.edu	37	12	53009975	53009975	+	Nonsense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-38-4625-TP	Broad	Nonsense_Mutation	SNP	53009975	53009975	KRT73	12	C	A	A	A	1	0	0	0	0	0	1	0	0	403	31	5	1	8386	96	1
TP53	7157	broad.mit.edu	37	17	7578246	7578247	+	Frame_Shift_Ins	INS	-	A	A			TCGA-38-4629-01A-02D-1265-08	TCGA-38-4629-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-38-4629-TP	Broad	Frame_Shift_Ins	INS	7578246	7578247	TP53	17	-	A	A	A	1	0	1	1	0	0	0	0	0	324	25	5	5	16226	100	1
CASP3	836	broad.mit.edu	37	4	185552920	185552920	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-38-4631-TP	Broad	Missense_Mutation	SNP	185552920	185552920	CASP3	4	T	A	A	A	1	0	0	0	0	1	0	0	0	715	55	4	4	2645	102	1
NF1	4763	broad.mit.edu	37	17	29654692	29654692	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4631-01A-01D-1753-08	TCGA-38-4631-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-38-4631-TP	Broad	Missense_Mutation	SNP	29654692	29654692	NF1	17	A	T	T	T	1	0	0	0	0	1	0	0	0	91	7	4	4	10240	102	1
ZIC3	7547	broad.mit.edu	37	X	136649500	136649500	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2655-01A-01D-1553-08	TCGA-44-2655-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-2655-TP	Broad	Missense_Mutation	SNP	136649500	136649500	ZIC3	23	C	C	G	G	1	0	0	0	0	1	0	0	0	312	24	3	3	17523	105	1
ACVR2A	92	broad.mit.edu	37	2	148683685	148683686	+	Frame_Shift_Ins	INS	-	A	A			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-2656-TP	Broad	Nonsense_Mutation	SNP	148683685	148683686	ACVR2A	2	--	--	A	A	1	0	0	0	0	0	1	0	0	634	49	5	4	223	106	1
ADAM12	8038	broad.mit.edu	37	10	127753557	127753557	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-2656-TP	Broad	Missense_Mutation	SNP	127753557	127753557	ADAM12	10	C	C	A	A	1	0	0	0	0	1	0	0	0	390	30	2	2	236	106	1
LRRC7	57554	broad.mit.edu	37	1	70504811	70504811	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2656-01A-02D-0969-08	TCGA-44-2656-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-2656-TP	Broad	Missense_Mutation	SNP	70504811	70504811	LRRC7	1	A	A	G	G	1	0	0	0	0	1	0	0	0	65	5	4	4	8913	106	1
MAML2	84441	broad.mit.edu	37	11	95713012	95713012	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2656-01A-02W-0928-08	TCGA-44-2656-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-2656-TP	Broad	Missense_Mutation	SNP	95713012	95713012	MAML2	11	C	T	T	T	1	0	0	0	0	1	0	0	0	325	25	3	3	9097	106	1
NF1	4763	broad.mit.edu	37	17	29667614	29667614	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-2659-TP	Broad	Missense_Mutation	SNP	29667614	29667614	NF1	17	T	A	A	A	1	0	0	0	0	1	0	0	0	728	56	4	4	10240	108	1
PIK3CA	5290	broad.mit.edu	37	3	178921566	178921566	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2668-01A-01D-0969-08	TCGA-44-2668-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-2668-TP	Broad	Missense_Mutation	SNP	178921566	178921566	PIK3CA	3	G	G	A	A	1	0	0	0	0	1	0	0	0	429	33	3	3	11786	113	1
TGFBR2	7048	broad.mit.edu	37	3	30732969	30732969	+	Missense_Mutation	SNP	C	T	T	rs104893810		TCGA-44-2668-01A-01D-0969-08	TCGA-44-2668-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-2668-TP	Broad	Missense_Mutation	SNP	30732969	30732969	TGFBR2	3	C	C	T	T	1	0	0	0	0	1	0	0	0	299	23	3	3	15670	113	1
CSMD3	114788	broad.mit.edu	37	8	113246653	113246653	+	Missense_Mutation	SNP	C	A	A			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-3918-TP	Broad	Missense_Mutation	SNP	113246653	113246653	CSMD3	8	C	A	A	A	1	0	0	0	0	1	0	0	0	260	20	2	2	3904	116	1
TRRAP	8295	broad.mit.edu	37	7	98519430	98519430	+	Missense_Mutation	SNP	C	A	A			TCGA-44-3918-01A-01D-1105-08	TCGA-44-3918-11A-01D-1105-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-3918-TP	Broad	Missense_Mutation	SNP	98519430	98519430	TRRAP	7	C	A	A	A	1	0	0	0	0	1	0	0	0	299	23	1	1	16446	116	1
APOBEC3G	60489	broad.mit.edu	37	22	39477517	39477517	+	Missense_Mutation	SNP	G	C	C			TCGA-44-3919-01A-02D-1458-08	TCGA-44-3919-10A-01D-1458-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-3919-TP	Broad	Missense_Mutation	SNP	39477517	39477517	APOBEC3G	22	G	C	C	C	1	0	0	0	0	1	0	0	0	429	33	3	3	785	117	1
TP53	7157	broad.mit.edu	37	17	7579580	7579580	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-5643-TP	Broad	Frame_Shift_Del	DEL	7579580	7579580	TP53	17	G	-	-	-	1	0	1	0	1	0	0	0	0	507	39	5	5	16226	119	1
MAP2	4133	broad.mit.edu	37	2	210518007	210518007	+	Missense_Mutation	SNP	G	T	T			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-6144-TP	Broad	Missense_Mutation	SNP	210518007	210518007	MAP2	2	G	G	T	T	1	0	0	0	0	1	0	0	0	559	43	2	2	9126	121	1
NF1	4763	broad.mit.edu	37	17	29546053	29546053	+	Missense_Mutation	SNP	G	C	C			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-6144-TP	Broad	Missense_Mutation	SNP	29546053	29546053	NF1	17	G	G	C	C	1	0	0	0	0	1	0	0	0	455	35	3	3	10240	121	1
STK11	6794	broad.mit.edu	37	19	1218447	1218447	+	Nonsense_Mutation	SNP	A	T	T			TCGA-44-6144-01A-11D-1753-08	TCGA-44-6144-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-6144-TP	Broad	Nonsense_Mutation	SNP	1218447	1218447	STK11	19	A	A	T	T	1	0	0	0	0	0	1	0	0	65	5	5	4	15139	121	1
MAP2	4133	broad.mit.edu	37	2	210557723	210557723	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-6147-01A-11D-1753-08	TCGA-44-6147-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-44-6147-TP	Broad	Nonsense_Mutation	SNP	210557723	210557723	MAP2	2	G	G	T	T	1	0	0	0	0	0	1	0	0	585	45	5	2	9126	124	1
STK11	6794	broad.mit.edu	37	19	1220449	1220449	+	Missense_Mutation	SNP	A	T	T			TCGA-49-4486-01A-01D-1265-08	TCGA-49-4486-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-4486-TP	Broad	Missense_Mutation	SNP	1220449	1220449	STK11	19	A	T	T	T	1	0	0	0	0	1	0	0	0	26	2	4	4	15139	132	1
ANKRD30A	91074	broad.mit.edu	37	10	37422904	37422904	+	Missense_Mutation	SNP	G	T	T			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-4507-TP	Broad	Missense_Mutation	SNP	37422904	37422904	ANKRD30A	10	G	T	T	T	1	0	0	0	0	1	0	0	0	438	34	2	2	653	140	1
GJB1	2705	broad.mit.edu	37	X	70443955	70443955	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-4507-TP	Broad	Nonsense_Mutation	SNP	70443955	70443955	GJB1	23	G	A	A	A	1	0	0	0	0	0	1	0	0	611	47	5	3	6329	140	1
STK11	6794	broad.mit.edu	37	19	1220434	1220434	+	Missense_Mutation	SNP	A	C	C			TCGA-49-4507-01A-01D-1265-08	TCGA-49-4507-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-4507-TP	Broad	Missense_Mutation	SNP	1220434	1220434	STK11	19	A	C	C	C	1	0	0	0	0	1	0	0	0	130	10	4	4	15139	140	1
KCNH5	27133	broad.mit.edu	37	14	63246447	63246447	+	Missense_Mutation	SNP	C	A	A			TCGA-49-4510-01A-01D-1265-08	TCGA-49-4510-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-4510-TP	Broad	Missense_Mutation	SNP	63246447	63246447	KCNH5	14	C	A	A	A	1	0	0	0	0	1	0	0	0	299	23	1	1	7938	141	1
TTN	7273	broad.mit.edu	37	2	179438325	179438325	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6742-01A-11D-1855-08	TCGA-49-6742-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-6742-TP	Broad	Missense_Mutation	SNP	179438325	179438325	TTN	2	T	G	G	G	1	0	0	0	0	1	0	0	0	725	56	4	4	16580	144	1
EYA4	2070	broad.mit.edu	37	6	133783490	133783490	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-6743-TP	Broad	Missense_Mutation	SNP	133783490	133783490	EYA4	6	T	A	A	A	1	0	0	0	0	1	0	0	0	728	56	4	4	5279	145	1
STS	412	broad.mit.edu	37	X	7175602	7175602	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6744-01A-11D-1855-08	TCGA-49-6744-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-6744-TP	Broad	Missense_Mutation	SNP	7175602	7175602	STS	23	G	T	T	T	1	0	0	0	0	1	0	0	0	533	41	2	2	15184	146	1
NLRP3	114548	broad.mit.edu	37	1	247588432	247588432	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6745-01A-11D-1855-08	TCGA-49-6745-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-49-6745-TP	Broad	Missense_Mutation	SNP	247588432	247588432	NLRP3	1	G	A	A	A	1	0	0	0	0	1	0	0	0	533	41	3	3	10360	147	1
CCDC93	54520	broad.mit.edu	37	2	118716003	118716003	+	Missense_Mutation	SNP	G	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5045-TP	Broad	Missense_Mutation	SNP	118716003	118716003	CCDC93	2	G	A	A	A	1	0	0	0	0	1	0	0	0	624	48	3	3	2841	150	1
GRID2	2895	broad.mit.edu	37	4	94031995	94031995	+	Missense_Mutation	SNP	C	A	A			TCGA-50-5045-01A-01D-1625-08	TCGA-50-5045-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5045-TP	Broad	Missense_Mutation	SNP	94031995	94031995	GRID2	4	C	A	A	A	1	0	0	0	0	1	0	0	0	234	18	2	2	6688	150	1
TAF1L	138474	broad.mit.edu	37	9	32633194	32633194	+	Missense_Mutation	SNP	A	G	G			TCGA-50-5049-01A-01D-1625-08	TCGA-50-5049-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5049-TP	Broad	Missense_Mutation	SNP	32633194	32633194	TAF1L	9	A	G	G	G	1	0	0	0	0	1	0	0	0	169	13	4	4	15373	151	1
EPHA6	285220	broad.mit.edu	37	3	96706660	96706660	+	Missense_Mutation	SNP	G	T	T			TCGA-50-5066-01A-01D-1625-08	TCGA-50-5066-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5066-TP	Broad	Missense_Mutation	SNP	96706660	96706660	EPHA6	3	G	T	T	T	1	0	0	0	0	1	0	0	0	585	45	2	2	5119	154	1
STK11	6794	broad.mit.edu	37	19	1218415	1218415	+	Splice_Site	SNP	G	T	T	rs112675807		TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5072-TP	Broad	Splice_Site	SNP	1218415	1218415	STK11	19	G	T	T	T	1	0	0	0	0	0	0	1	0	455	35	5	2	15139	156	1
TBC1D19	55296	broad.mit.edu	37	4	26744202	26744202	+	Nonsense_Mutation	SNP	C	T	T	rs141345574		TCGA-50-5931-01A-11D-1753-08	TCGA-50-5931-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5931-TP	Broad	Nonsense_Mutation	SNP	26744202	26744202	TBC1D19	4	C	T	T	T	1	0	0	0	0	0	1	0	0	243	19	5	3	15457	158	1
KCNA10	3744	broad.mit.edu	37	1	111060811	111060811	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5941-01A-11D-1753-08	TCGA-50-5941-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5941-TP	Broad	Missense_Mutation	SNP	111060811	111060811	KCNA10	1	C	T	T	T	1	0	0	0	0	1	0	0	0	247	19	3	3	7905	164	1
IRX6	79190	broad.mit.edu	37	16	55360423	55360423	+	Missense_Mutation	SNP	C	T	T			TCGA-50-5944-01A-11D-1753-08	TCGA-50-5944-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-5944-TP	Broad	Missense_Mutation	SNP	55360423	55360423	IRX6	16	C	T	T	T	1	0	0	0	0	1	0	0	0	286	22	3	3	7752	166	1
PIK3CA	5290	broad.mit.edu	37	3	178921542	178921542	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-6590-TP	Broad	Missense_Mutation	SNP	178921542	178921542	PIK3CA	3	A	T	T	T	1	0	0	0	0	1	0	0	0	26	2	4	4	11786	168	1
PMS1	5378	broad.mit.edu	37	2	190682749	190682749	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-6590-TP	Broad	Missense_Mutation	SNP	190682749	190682749	PMS1	2	C	G	G	G	1	0	0	0	0	1	0	0	0	260	20	3	3	12013	168	1
REM1	28954	broad.mit.edu	37	20	30070119	30070120	+	Frame_Shift_Ins	INS	-	C	C			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-6590-TP	Broad	Frame_Shift_Ins	INS	30070119	30070120	REM1	20	-	C	C	C	1	0	1	1	0	0	0	0	0	587	46	5	5	13087	168	1
ZNF385D	79750	broad.mit.edu	37	3	21462738	21462738	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6590-01A-12D-1855-08	TCGA-50-6590-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-6590-TP	Broad	Missense_Mutation	SNP	21462738	21462738	ZNF385D	3	C	T	T	T	1	0	0	0	0	1	0	0	0	351	27	3	3	17721	168	1
EGFR	1956	broad.mit.edu	37	7	55242490	55242507	+	In_Frame_Del	DEL	AAAGCCAACAAGGAAATC	-	-			TCGA-50-6591-01A-11D-1753-08	TCGA-50-6591-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-6591-TP	Broad	In_Frame_Del	DEL	55242490	55242507	EGFR	7	AAAGCCAACAAGGAAATC	-	-	-	1	0	1	0	1	0	0	0	0	117	9	5	5	4915	169	1
OR2L13	284521	broad.mit.edu	37	1	248262995	248262995	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-50-6594-TP	Broad	Missense_Mutation	SNP	248262995	248262995	OR2L13	1	G	T	T	T	1	0	0	0	0	1	0	0	0	611	47	2	2	10884	172	1
NF1	4763	broad.mit.edu	37	17	29657349	29657349	+	Missense_Mutation	SNP	G	A	A			TCGA-55-1592-01A-01D-0969-08	TCGA-55-1592-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-55-1592-TP	Broad	Missense_Mutation	SNP	29657349	29657349	NF1	17	G	G	A	A	1	0	0	0	0	1	0	0	0	624	48	3	3	10240	175	1
KCNV1	27012	broad.mit.edu	37	8	110980325	110980325	+	Missense_Mutation	SNP	A	G	G			TCGA-55-1595-01A-01D-0969-08	TCGA-55-1595-11A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-55-1595-TP	Broad	Missense_Mutation	SNP	110980325	110980325	KCNV1	8	A	G	G	G	1	0	0	0	0	1	0	0	0	91	7	4	4	7997	177	1
ADCY8	114	broad.mit.edu	37	8	131848553	131848553	+	Missense_Mutation	SNP	A	G	G			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-55-5899-TP	Broad	Missense_Mutation	SNP	131848553	131848553	ADCY8	8	A	G	G	G	1	0	0	0	0	1	0	0	0	91	7	4	4	300	179	1
APC	324	broad.mit.edu	37	5	112173704	112173704	+	Frame_Shift_Del	DEL	C	-	-			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-55-5899-TP	Broad	Frame_Shift_Del	DEL	112173704	112173704	APC	5	C	-	-	-	1	0	1	0	1	0	0	0	0	399	31	5	5	754	179	1
HCK	3055	broad.mit.edu	37	20	30686834	30686834	+	Missense_Mutation	SNP	C	A	A			TCGA-55-5899-01A-11D-1625-08	TCGA-55-5899-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-55-5899-TP	Broad	Missense_Mutation	SNP	30686834	30686834	HCK	20	C	A	A	A	1	0	0	0	0	1	0	0	0	364	28	2	2	6903	179	1
RFC1	5981	broad.mit.edu	37	4	39314400	39314400	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1676-01A-01D-0969-08	TCGA-64-1676-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-64-1676-TP	Broad	Missense_Mutation	SNP	39314400	39314400	RFC1	4	C	C	A	A	1	0	0	0	0	1	0	0	0	247	19	1	1	13109	183	1
TP53	7157	broad.mit.edu	37	17	7579536	7579545	+	Frame_Shift_Del	DEL	CAATATCGTC	-	-			TCGA-64-1677-01A-01W-0928-08	TCGA-64-1677-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-64-1677-TP	Broad	Frame_Shift_Del	DEL	7579536	7579545	TP53	17	CAATATCGTC	-	-	-	1	0	1	0	1	0	0	0	0	377	29	5	5	16226	184	1
DDX1	1653	broad.mit.edu	37	2	15742716	15742716	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-5774-01A-01D-1625-08	TCGA-64-5774-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-64-5774-TP	Broad	Nonsense_Mutation	SNP	15742716	15742716	DDX1	2	G	T	T	T	1	0	0	0	0	0	1	0	0	533	41	5	2	4292	187	1
WT1	7490	broad.mit.edu	37	11	32414272	32414272	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-64-5775-TP	Broad	Missense_Mutation	SNP	32414272	32414272	WT1	11	C	A	A	A	1	0	0	0	0	1	0	0	0	390	30	2	2	17252	188	1
MTOR	2475	broad.mit.edu	37	1	11319445	11319445	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5779-01A-01D-1625-08	TCGA-64-5779-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-64-5779-TP	Broad	Missense_Mutation	SNP	11319445	11319445	MTOR	1	C	A	A	A	1	0	0	0	0	1	0	0	0	351	27	1	1	9841	190	1
EPHA5	2044	broad.mit.edu	37	4	66356246	66356246	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-64-5781-TP	Broad	Frame_Shift_Del	DEL	66356246	66356246	EPHA5	4	C	-	-	-	1	0	1	0	1	0	0	0	0	327	26	5	5	5118	191	1
TBX22	50945	broad.mit.edu	37	X	79277918	79277918	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5781-01A-01D-1625-08	TCGA-64-5781-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-64-5781-TP	Broad	Missense_Mutation	SNP	79277918	79277918	TBX22	23	C	A	A	A	1	0	0	0	0	1	0	0	0	350	27	1	1	15507	191	1
AURKC	6795	broad.mit.edu	37	19	57744834	57744834	+	Nonsense_Mutation	SNP	G	T	T			TCGA-67-3771-01A-01W-0928-08	TCGA-67-3771-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-67-3771-TP	Broad	Nonsense_Mutation	SNP	57744834	57744834	AURKC	19	G	T	T	T	1	0	0	0	0	0	1	0	0	429	33	5	2	1212	194	1
C17orf57	124989	broad.mit.edu	37	17	45447856	45447856	+	Missense_Mutation	SNP	G	C	C			TCGA-67-3771-01A-01W-0928-08	TCGA-67-3771-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-67-3771-TP	Broad	Missense_Mutation	SNP	45447856	45447856	C17orf57	17	G	C	C	C	1	0	0	0	0	1	0	0	0	533	41	3	3	1847	194	1
PABPC3	5042	broad.mit.edu	37	13	25671037	25671037	+	Missense_Mutation	SNP	G	T	T			TCGA-67-3771-01A-01W-0928-08	TCGA-67-3771-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-67-3771-TP	Broad	Missense_Mutation	SNP	25671037	25671037	PABPC3	13	G	T	T	T	1	0	0	0	0	1	0	0	0	533	41	2	2	11241	194	1
PTCH1	5727	broad.mit.edu	37	9	98242849	98242849	+	Missense_Mutation	SNP	C	G	G			TCGA-67-3771-01A-01D-1040-01	TCGA-67-3771-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-67-3771-TP	Broad	Missense_Mutation	SNP	98242849	98242849	PTCH1	9	C	C	G	G	1	0	0	0	0	1	0	0	0	390	30	3	3	12595	194	1
NLRP10	338322	broad.mit.edu	37	11	7981660	7981660	+	Missense_Mutation	SNP	T	C	C			TCGA-67-3772-01A-01W-0928-08	TCGA-67-3772-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-67-3772-TP	Broad	Missense_Mutation	SNP	7981660	7981660	NLRP10	11	T	C	C	C	1	0	0	0	0	1	0	0	0	702	54	4	4	10354	195	1
CROT	54677	broad.mit.edu	37	7	86998766	86998766	+	Missense_Mutation	SNP	G	A	A			TCGA-67-6216-01A-11D-1753-08	TCGA-67-6216-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-67-6216-TP	Broad	Missense_Mutation	SNP	86998766	86998766	CROT	7	G	A	A	A	1	0	0	0	0	1	0	0	0	585	45	3	3	3852	200	1
TMPRSS6	164656	broad.mit.edu	37	22	37499438	37499438	+	Missense_Mutation	SNP	G	A	A			TCGA-71-6725-01A-11D-1855-08	TCGA-71-6725-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-71-6725-TP	Broad	Missense_Mutation	SNP	37499438	37499438	TMPRSS6	22	G	A	A	A	1	0	0	0	0	1	0	0	0	559	43	3	3	16096	202	1
C14orf49	161176	broad.mit.edu	37	14	95921952	95921952	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4670-01A-01D-1265-08	TCGA-73-4670-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-73-4670-TP	Broad	Missense_Mutation	SNP	95921952	95921952	C14orf49	14	C	G	G	G	1	0	0	0	0	1	0	0	0	390	30	3	3	1760	208	1
SETD2	29072	broad.mit.edu	37	3	47158225	47158225	+	Nonsense_Mutation	SNP	G	A	A			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-73-4676-TP	Broad	Nonsense_Mutation	SNP	47158225	47158225	SETD2	3	G	A	A	A	1	0	0	0	0	0	1	0	0	480	37	5	3	13988	210	1
SLITRK4	139065	broad.mit.edu	37	X	142716785	142716785	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4676-01A-01D-1753-08	TCGA-73-4676-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-73-4676-TP	Broad	Missense_Mutation	SNP	142716785	142716785	SLITRK4	23	G	T	T	T	1	0	0	0	0	1	0	0	0	533	41	2	2	14600	210	1
MAGEB16	139604	broad.mit.edu	37	X	35820648	35820648	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4677-01A-01D-1265-08	TCGA-73-4677-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-73-4677-TP	Broad	Missense_Mutation	SNP	35820648	35820648	MAGEB16	23	C	T	T	T	1	0	0	0	0	1	0	0	0	364	28	3	3	9065	211	1
CXorf59	286464	broad.mit.edu	37	X	36091444	36091444	+	Nonsense_Mutation	SNP	G	T	T			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-75-5126-TP	Broad	Nonsense_Mutation	SNP	36091444	36091444	CXorf59	23	G	T	T	T	1	0	0	0	0	0	1	0	0	455	35	5	2	4068	214	1
STRA6	64220	broad.mit.edu	37	15	74487672	74487672	+	Missense_Mutation	SNP	G	T	T			TCGA-75-5126-01A-01D-1753-08	TCGA-75-5126-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-75-5126-TP	Broad	Missense_Mutation	SNP	74487672	74487672	STRA6	15	G	T	T	T	1	0	0	0	0	1	0	0	0	598	46	2	2	15174	214	1
MET	4233	broad.mit.edu	37	7	116412024	116412024	+	Nonsense_Mutation	SNP	C	G	G			TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-75-6205-TP	Broad	Nonsense_Mutation	SNP	116412024	116412024	MET	7	C	G	G	G	1	0	0	0	0	0	1	0	0	233	18	5	3	9374	218	1
STK36	27148	broad.mit.edu	37	2	219563892	219563892	+	Missense_Mutation	SNP	C	T	T	rs142956585		TCGA-75-6205-01A-11D-1753-08	TCGA-75-6205-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-75-6205-TP	Broad	Missense_Mutation	SNP	219563892	219563892	STK36	2	C	T	T	T	1	0	0	0	0	1	0	0	0	295	23	3	3	15154	218	1
CBFA2T3	863	broad.mit.edu	37	16	88951655	88951655	+	Missense_Mutation	SNP	G	T	T			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-75-6211-TP	Broad	Missense_Mutation	SNP	88951655	88951655	CBFA2T3	16	G	T	T	T	1	0	0	0	0	1	0	0	0	507	39	1	1	2671	221	1
COL3A1	1281	broad.mit.edu	37	2	189876399	189876399	+	Missense_Mutation	SNP	C	A	A			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-75-6211-TP	Broad	Missense_Mutation	SNP	189876399	189876399	COL3A1	2	C	A	A	A	1	0	0	0	0	1	0	0	0	247	19	1	1	3646	221	1
TP53	7157	broad.mit.edu	37	17	7579481	7579482	+	Frame_Shift_Ins	INS	-	C	C			TCGA-75-6211-01A-11D-1753-08	TCGA-75-6211-10A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-75-6211-TP	Broad	Frame_Shift_Ins	INS	7579481	7579482	TP53	17	-	C	C	C	1	0	1	1	0	0	0	0	0	442	34	5	5	16226	221	1
ANK1	286	broad.mit.edu	37	8	41519378	41519378	+	Missense_Mutation	SNP	G	A	A			TCGA-80-5611-01A-01D-1625-08	TCGA-80-5611-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-80-5611-TP	Broad	Missense_Mutation	SNP	41519378	41519378	ANK1	8	G	A	A	A	1	0	0	0	0	1	0	0	0	546	42	3	3	616	223	1
RB1	5925	broad.mit.edu	37	13	48941720	48941720	+	Nonsense_Mutation	SNP	C	T	T			TCGA-91-6835-01A-11D-1855-08	TCGA-91-6835-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-91-6835-TP	Broad	Nonsense_Mutation	SNP	48941720	48941720	RB1	13	C	T	T	T	1	0	0	0	0	0	1	0	0	377	29	5	3	12963	228	1
NLRP5	126206	broad.mit.edu	37	19	56538872	56538872	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6836-01A-21D-1855-08	TCGA-91-6836-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx	LUAD-91-6836-TP	Broad	Missense_Mutation	SNP	56538872	56538872	NLRP5	19	C	T	T	T	1	0	0	0	0	1	0	0	0	299	23	3	3	10362	229	1
