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fh_MutSigPreprocess
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigPreprocess.90.3705/
-i
THCA
-b
hg19
-t
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_hg19.txt
-c
/xchip/cga1/annotation/db/tracks/hg19/c65e
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-cat
4
-maf1
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/THCA/1911605/maf1.input.tsv
-maflabel1
Broad
-maflabel2
WashU
-maflabel3
Baylor
-wig1
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/THCA/1911605/wig1.input.tsv
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt

               perform_mutsig2_analysis: 1
     use_sample_specific_mutation_rates: 1
        analyze_silent_nonsilent_ratios: 1
                 sig_calculation_method: 'projection'
                           print_report: 0
                  clip_tumor_from_names: 1
                                  build: 'hg19'
                              build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
             keep_barebones_fields_only: 0
    consolidate_adjacent_muts_threshold: 1
             remove_noncoding_mutations: 1
                    enforce_target_list: 0
                            target_list: [1x69 char]
                     mutation_blacklist: []
                     mutation_whitelist: []

Loading MAFs for Broad
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A0YZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A0Z0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A0Z2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A0Z3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A0Z5-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A0Z9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A0ZA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A0ZB-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A0ZC-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A0ZE-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A0ZF-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A0ZG-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A0ZH-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A0ZJ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A18Y-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A18Z-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A190-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A191-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A192-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A28R-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A28S-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A28T-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A28V-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A28X-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A28Z-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A290-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A2N7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A2N8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A2N9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A2NA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A2P4-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A3EZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A3F0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A3PR-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A3PT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-BJ-A3PU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-CE-A13K-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-CE-A27D-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-CE-A3MD-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-CE-A3ME-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DE-A0XZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DE-A0Y2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DE-A0Y3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DE-A2OL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DE-A3KN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A13L-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A13M-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A13O-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A13P-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A13R-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A13S-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A13T-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A13U-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A13V-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A13W-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A13X-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A1QD-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A1QE-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A1QF-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A1QG-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A1QH-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A1QI-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A1QL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A1QM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A1QN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A1QO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A1QQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2PN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2PO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2PP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2PQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2PR-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2PS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2PT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2PU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2PV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2PW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2PX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2PY-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2PZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2Q0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2Q1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2Q2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2Q3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2Q4-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2Q5-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2Q6-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2Q7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2Q8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2Q9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2QA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2QB-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A2QC-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A3UK-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A3UM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A3UN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A3UO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A3UP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A3UQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A3UR-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A3US-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A3UT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A3UU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A3UV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A3UW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A3UX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DJ-A3UY-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DO-A1JZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DO-A1K0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-DO-A2HM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-E3-A3DY-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-E3-A3DZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-E3-A3E0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-E3-A3E1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-E3-A3E2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-E3-A3E3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-E3-A3E5-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-E8-A242-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-E8-A2EA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3CL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3CM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3CN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3CO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3CP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3CR-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3CS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3CT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3CU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3CV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3CW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3CX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3CY-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3CZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3D0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3D1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3D4-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3D5-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3D6-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3GO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3GP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3GQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3GR-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3GS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3GU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3GV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3GW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3GX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3GY-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3GZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3H1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3H2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3H3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3H4-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3H5-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3H7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3H8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3MW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3MX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3MY-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3MZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3N2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3N3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3T0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3T1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3T2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3T3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3T6-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3T7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3T8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3T9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3TA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EL-A3TB-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A1CS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A1CT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A1CU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A1CV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A1CW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A1YA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A1YB-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A1YC-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A1YD-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A1YE-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A22I-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A22J-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A22K-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A22L-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A22M-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A22N-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A22O-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A22P-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A22Q-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A2CJ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A2CK-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A2CL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A2CM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A2CN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A2CO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A2CP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A2CQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A2CR-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A2CT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A2CU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A2OV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A2OW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A2OX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A2OY-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A2P0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A2P1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A2P2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A2P3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3AI-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3AJ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3AK-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3AL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3AN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3AO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3AP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3AQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3AR-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3FJ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3FK-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3FL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3FM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3FN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3FO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3FP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3FQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3FR-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3O3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3O6-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3O7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3O8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3O9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3OA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-EM-A3OB-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A25G-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A25I-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A25J-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A25K-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A25O-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A25R-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A2MY-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A2MZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A2N0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A2N1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A2N4-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A2N5-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A39I-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A39J-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A39K-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A39L-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A39M-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A39N-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A39O-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A39P-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A39R-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A39S-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A39T-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A3BN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A3BO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A3BP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A3BQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A3BS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A3BT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A3BU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A3BV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A3BW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A3BX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A3DO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A3DP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A3DQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A3DR-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A3DS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A3DT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A3DU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A3DV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-ET-A3DW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FE-A22Z-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FE-A230-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FE-A231-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FE-A232-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FE-A233-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FE-A234-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FE-A235-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FE-A236-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FE-A237-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FE-A23A-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FE-A3PB-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FE-A3PC-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FE-A3PD-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FK-A3S3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FK-A3SB-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FK-A3SD-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FK-A3SE-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FK-A3SG-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FK-A3SH-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FY-A2QD-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FY-A3BL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FY-A3I4-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FY-A3I5-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FY-A3NM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FY-A3NN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FY-A3NP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FY-A3ON-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FY-A3R6-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FY-A3R7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FY-A3R8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FY-A3R9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FY-A3RA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FY-A3W9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-FY-A3WA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-GE-A2C6-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-H2-A26U-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-H2-A2K9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-H2-A3RH-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-H2-A3RI-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-IM-A3EB-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-IM-A3ED-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-IM-A3U2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-IM-A3U3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-J8-A3NZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-J8-A3O0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/thca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_THCA.IlluminaGA_DNASeq.Level_2.2.0.0/TCGA-J8-A3O1-01.maf.txt
Concatenating structs...

                   Annotation_Transcript: [323]
                                BAM_file: [323]
      CCLE_ONCOMAP_overlapping_mutations: [323]
    CCLE_ONCOMAP_total_mutations_in_gene: [323]
                       CGC_Mutation_Type: [323]
                      CGC_Other_Diseases: [323]
               CGC_Translocation_Partner: [323]
                CGC_Tumor_Types_Germline: [323]
                 CGC_Tumor_Types_Somatic: [323]
                     COSMIC_fusion_genes: [323]
            COSMIC_overlapping_mutations: [323]
            COSMIC_tissue_types_affected: [323]
        COSMIC_total_alterations_in_gene: [323]
                                  Center: [323]
                              Chromosome: [323]
                            Codon_Change: [323]
                     DNARepairGenes_Role: [323]
                             Description: [323]
                                DrugBank: [323]
                            End_position: [323]
                          Entrez_Gene_Id: [323]
        FamilialCancerDatabase_Syndromes: [323]
                   GO_Biological_Process: [323]
                   GO_Cellular_Component: [323]
                   GO_Molecular_Function: [323]
                           Genome_Change: [323]
                             Hugo_Symbol: [323]
                MUTSIG_Published_Results: [323]
                  Match_Norm_Seq_Allele1: [323]
                  Match_Norm_Seq_Allele2: [323]
           Match_Norm_Validation_Allele1: [323]
           Match_Norm_Validation_Allele2: [323]
             Matched_Norm_Sample_Barcode: [323]
                Matched_Norm_Sample_UUID: [323]
                         Mutation_Status: [323]
                              NCBI_Build: [323]
                             OREGANNO_ID: [323]
                         OREGANNO_Values: [323]
                       Other_Transcripts: [323]
                          Protein_Change: [323]
                        Reference_Allele: [323]
                          Refseq_mRNA_Id: [323]
                          Refseq_prot_Id: [323]
                                   Score: [323]
                         Sequence_Source: [323]
                               Sequencer: [323]
                        Sequencing_Phase: [323]
                          Start_position: [323]
                                  Strand: [323]
                        SwissProt_acc_Id: [323]
                      SwissProt_entry_Id: [323]
           TCGAscape_Amplification_Peaks: [323]
                TCGAscape_Deletion_Peaks: [323]
                         Transcript_Exon: [323]
                     Transcript_Position: [323]
                       Transcript_Strand: [323]
                    Tumor_Sample_Barcode: [323]
                       Tumor_Sample_UUID: [323]
                       Tumor_Seq_Allele1: [323]
                       Tumor_Seq_Allele2: [323]
                Tumor_Validation_Allele1: [323]
                Tumor_Validation_Allele2: [323]
          Tumorscape_Amplification_Peaks: [323]
               Tumorscape_Deletion_Peaks: [323]
                           UniProt_AApos: [323]
               UniProt_Experimental_Info: [323]
              UniProt_Natural_Variations: [323]
                          UniProt_Region: [323]
                            UniProt_Site: [323]
                       Validation_Method: [323]
                       Validation_Status: [323]
                  Variant_Classification: [323]
                            Variant_Type: [323]
                     Verification_Status: [323]
                             cDNA_Change: [323]
                                 dataset: [323]
                                dbSNP_RS: [323]
                        dbSNP_Val_Status: [323]
                              gc_content: [323]
                          isArtifactMode: [323]
                                 oxoGCut: [323]
                                 patient: [323]
                                     pox: [323]
                              pox_cutoff: [323]
                                     qox: [323]
                             ref_context: [323]
                             t_alt_count: [323]
                             t_ref_count: [323]
                   validation_alt_allele: [323]
                       validation_method: [323]
                       validation_status: [323]
                 validation_tumor_sample: [323]
                               ----TOTAL: [29716]
Calling preprocess_mutations...
WARNING: unknown chromosome(s):
    'M'
    'MT'

Validation_Status:

             : [11439]
    ----TOTAL: [11439]
Omitting the following 99 mutations on nonstandard chromosomes:

            M: [27]
           MT: [72]
    ----TOTAL: [99]
Removing the following non-coding mutations (based on "type" field):
      5'Flank: [352]
          IGR: [3156]
          RNA: [689]
    ----TOTAL: [4197]
Not enforcing any target list.
Collapsing adjacent mutations:
convert_chr: assuming human for chrX/chrY

    2 SNPs to one Complex_substitution (guessing "Missense"): [2]
                     2 SNPs to one DNP (guessing "Missense"): [1]
                                                   ----TOTAL: [3]

Genes affected:
       ANAPC1: [1]
       EIF1AX: [1]
       SDHAP2: [1]
    ----TOTAL: [3]

Patients affected:
    THCA-BJ-A0Z0-TP: [1]
    THCA-EL-A3CT-TP: [1]
    THCA-EM-A1YA-TP: [1]
          ----TOTAL: [3]
convert_chr: assuming human for chrX/chrY
Collapsed 7143 muts to 7140 muts
Getting context: 
Done.
Saved THCA.mutation_preprocessing_report.txt
Saved THCA.maf
Total of 323 patients had both MAF and WIG data.
Saved THCA.patients.txt
Saved THCA.coverage.prepare.txt
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigPreprocess.90.3705/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/215802
mFile: fh_MutSigPreprocess
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigPreprocess.90.3705/fh_MutSigPreprocess /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigPreprocess.90.3705/ -i THCA -b hg19 -t /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_hg19.txt -c /xchip/cga1/annotation/db/tracks/hg19/c65e -bd /xchip/cga1/annotation/db/ucsc/hg19 -cat 4 -maf1 /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/THCA/1911605/maf1.input.tsv -maflabel1 Broad -maflabel2 WashU -maflabel3 Baylor -wig1 /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/THCA/1911605/wig1.input.tsv -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
