Warning: No display specified.  You will not be able to display graphics on the screen.
fh_MutSigPreprocess
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigPreprocess.90.3705/
-i
BLCA-TP
-b
hg19
-t
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_hg19.txt
-c
/xchip/cga1/annotation/db/tracks/hg19/c65e
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-cat
4
-maf1
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/BLCA-TP/2283637/maf1.input.tsv
-maflabel1
Broad
-maflabel2
WashU
-maflabel3
Baylor
-wig1
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/BLCA-TP/2283637/wig1.input.tsv
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0_cga.pancan.blacklist.v7.hg19.params.txt

                     mutation_blacklist: [1x73 char]
               perform_mutsig2_analysis: 1
     use_sample_specific_mutation_rates: 1
        analyze_silent_nonsilent_ratios: 1
                 sig_calculation_method: 'projection'
                           print_report: 0
                  clip_tumor_from_names: 1
                                  build: 'hg19'
                              build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
             keep_barebones_fields_only: 0
    consolidate_adjacent_muts_threshold: 1
             remove_noncoding_mutations: 1
                    enforce_target_list: 0
                            target_list: [1x69 char]
                     mutation_whitelist: []

Loading MAFs for Broad
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BL-A0C8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BL-A13I-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BL-A13J-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BT-A0S7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BT-A0YX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BT-A20J-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BT-A20N-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BT-A20O-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BT-A20P-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BT-A20Q-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BT-A20T-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BT-A20U-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BT-A20V-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BT-A20W-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-C4-A0EZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-C4-A0F0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-C4-A0F1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-C4-A0F6-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-C4-A0F7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-CF-A1HR-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-CF-A1HS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-CU-A0YN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-CU-A0YO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-CU-A0YR-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-DK-A1A3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-DK-A1A5-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-DK-A1A7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-DK-A1AB-01.maf.txt
Concatenating structs...

                   Annotation_Transcript: [28]
                                BAM_file: [28]
      CCLE_ONCOMAP_overlapping_mutations: [28]
    CCLE_ONCOMAP_total_mutations_in_gene: [28]
                       CGC_Mutation_Type: [28]
                      CGC_Other_Diseases: [28]
               CGC_Translocation_Partner: [28]
                CGC_Tumor_Types_Germline: [28]
                 CGC_Tumor_Types_Somatic: [28]
                     COSMIC_fusion_genes: [28]
            COSMIC_overlapping_mutations: [28]
            COSMIC_tissue_types_affected: [28]
        COSMIC_total_alterations_in_gene: [28]
                                  Center: [28]
                              Chromosome: [28]
                            Codon_Change: [28]
                     DNARepairGenes_Role: [28]
                             Description: [28]
                                DrugBank: [28]
                            End_position: [28]
                          Entrez_Gene_Id: [28]
        FamilialCancerDatabase_Syndromes: [28]
                   GO_Biological_Process: [28]
                   GO_Cellular_Component: [28]
                   GO_Molecular_Function: [28]
                           Genome_Change: [28]
                             Hugo_Symbol: [28]
                MUTSIG_Published_Results: [28]
                  Match_Norm_Seq_Allele1: [28]
                  Match_Norm_Seq_Allele2: [28]
           Match_Norm_Validation_Allele1: [28]
           Match_Norm_Validation_Allele2: [28]
             Matched_Norm_Sample_Barcode: [28]
                         Mutation_Status: [28]
                              NCBI_Build: [28]
                             OREGANNO_ID: [28]
                         OREGANNO_Values: [28]
                       Other_Transcripts: [28]
                          Protein_Change: [28]
                        Reference_Allele: [28]
                          Refseq_mRNA_Id: [28]
                          Refseq_prot_Id: [28]
                                   Score: [28]
                         Sequence_Source: [28]
                               Sequencer: [28]
                        Sequencing_Phase: [28]
                          Start_position: [28]
                                  Strand: [28]
                        SwissProt_acc_Id: [28]
                      SwissProt_entry_Id: [28]
           TCGAscape_Amplification_Peaks: [28]
                TCGAscape_Deletion_Peaks: [28]
                         Transcript_Exon: [28]
                     Transcript_Position: [28]
                       Transcript_Strand: [28]
                    Tumor_Sample_Barcode: [28]
                       Tumor_Seq_Allele1: [28]
                       Tumor_Seq_Allele2: [28]
                Tumor_Validation_Allele1: [28]
                Tumor_Validation_Allele2: [28]
          Tumorscape_Amplification_Peaks: [28]
               Tumorscape_Deletion_Peaks: [28]
                           UniProt_AApos: [28]
               UniProt_Experimental_Info: [28]
              UniProt_Natural_Variations: [28]
                          UniProt_Region: [28]
                            UniProt_Site: [28]
                       Validation_Method: [28]
                       Validation_Status: [28]
                  Variant_Classification: [28]
                            Variant_Type: [28]
                     Verification_Status: [28]
                             cDNA_Change: [28]
                                 dataset: [28]
                                dbSNP_RS: [28]
                        dbSNP_Val_Status: [28]
                                  filter: [28]
                              gc_content: [28]
                                 patient: [28]
                             ref_context: [28]
                             t_alt_count: [28]
                             t_ref_count: [28]
                   validation_alt_allele: [28]
                       validation_method: [28]
                       validation_status: [28]
                 validation_tumor_sample: [28]
                               ----TOTAL: [2408]
Calling preprocess_mutations...
WARNING: unknown chromosome(s):
    'M'

Validation_Status:

             : [10380]
    ----TOTAL: [10380]
Omitting the following 4 mutations on nonstandard chromosomes:

            M: [4]
    ----TOTAL: [4]
Applying mutation blacklist:  /xchip/cga1/reference/mutsig_params/pancan_mutation_blacklist.v7.hg19.txt
WARNING: unknown chromosome(s):
    {''}

WARNING: chromosome number(s) out of range for this genome
     0

{Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In convert_chr at 104
  In add_and_convert_simple_fieldnames at 32
  In preprocess_mutations at 77
  In fh_MutSigPreprocess at 200
Omitting the following 553 blacklisted mutations:
  Columns 1 through 4

    'BLCA-BL-A0C8-TP'    'MACC1'           [ 7]    [ 20180451]
    'BLCA-BL-A0C8-TP'    'ANKRD20A3'       [ 9]    [ 67938633]
    'BLCA-BL-A0C8-TP'    'CACNG8'          [19]    [ 54483190]
    'BLCA-BL-A0C8-TP'    'RAB3B'           [ 1]    [ 52446101]
    'BLCA-BL-A0C8-TP'    'TM2D1'           [ 1]    [ 62160525]
    'BLCA-BL-A0C8-TP'    'TCTEX1D1'        [ 1]    [ 67242226]
    'BLCA-BL-A0C8-TP'    'C1orf100'        [ 1]    [244542155]
    'BLCA-BL-A0C8-TP'    'UGDH'            [ 4]    [ 39505927]
    'BLCA-BL-A0C8-TP'    'LRBA'            [ 4]    [151642666]
    'BLCA-BL-A0C8-TP'    'CYP4V2'          [ 4]    [187118942]
    'BLCA-BL-A0C8-TP'    'IK'              [ 5]    [140031161]
    'BLCA-BL-A0C8-TP'    'GEMIN5'          [ 5]    [154270615]
    'BLCA-BL-A0C8-TP'    'SYCP2L'          [ 6]    [ 10964195]
    'BLCA-BL-A0C8-TP'    'C9orf96'         [ 9]    [136249341]
    'BLCA-BL-A0C8-TP'    'MAGOHB'          [12]    [ 10763420]
    'BLCA-BL-A0C8-TP'    'HERC2'           [15]    [ 28517891]
    'BLCA-BL-A0C8-TP'    'DNAH3'           [16]    [ 21071848]
    'BLCA-BL-A0C8-TP'    'Unknown'         [16]    [ 60214732]
    'BLCA-BL-A0C8-TP'    'USP6'            [17]    [  5035457]
    'BLCA-BL-A0C8-TP'    'TAC4'            [17]    [ 47925054]
    'BLCA-BL-A0C8-TP'    'C19orf44'        [19]    [ 16625197]
    'BLCA-BL-A0C8-TP'    'RYR1'            [19]    [ 39009568]
    'BLCA-BL-A0C8-TP'    'CYTSA'           [22]    [ 24761815]
    'BLCA-BL-A13I-TP'    'MST1P2'          [ 1]    [ 16974549]
    'BLCA-BL-A13I-TP'    'ARHGAP11B'       [15]    [ 30938316]
    'BLCA-BL-A13I-TP'    'ARHGAP11B'       [15]    [ 30938483]
    'BLCA-BL-A13I-TP'    'GLIS1'           [ 1]    [ 53975643]
    'BLCA-BL-A13I-TP'    'Unknown'         [ 1]    [148855840]
    'BLCA-BL-A13I-TP'    'CCDC36'          [ 3]    [ 49278972]
    'BLCA-BL-A13I-TP'    'ATP13A5'         [ 3]    [193069205]
    'BLCA-BL-A13I-TP'    'KCNIP4'          [ 4]    [ 21305673]
    'BLCA-BL-A13I-TP'    'Unknown'         [ 5]    [177398373]
    'BLCA-BL-A13I-TP'    'EXT1'            [ 8]    [119108904]
    'BLCA-BL-A13I-TP'    'GLDC'            [ 9]    [  6594803]
    'BLCA-BL-A13I-TP'    'NCS1'            [ 9]    [132985259]
    'BLCA-BL-A13I-TP'    'PTF1A'           [10]    [ 23482393]
    'BLCA-BL-A13I-TP'    'GPR81'           [12]    [123201446]
    'BLCA-BL-A13I-TP'    'ACOT2'           [14]    [ 74036674]
    'BLCA-BL-A13I-TP'    'MTA1'            [14]    [105905492]
    'BLCA-BL-A13I-TP'    'ABCA7'           [19]    [  1049471]
    'BLCA-BL-A13I-TP'    'INSR'            [19]    [  7153065]
    'BLCA-BL-A13I-TP'    'EDN3'            [20]    [ 57899654]
    'BLCA-BL-A13J-TP'    'NBPF1'           [ 1]    [ 16918783]
    'BLCA-BL-A13J-TP'    'LOC642826'       [10]    [ 47207813]
    'BLCA-BL-A13J-TP'    'Unknown'         [16]    [ 28354353]
    'BLCA-BL-A13J-TP'    'Unknown'         [16]    [ 90161902]
    'BLCA-BL-A13J-TP'    'FLJ36000'        [17]    [ 21904125]
    'BLCA-BL-A13J-TP'    'RPSAP58'         [19]    [ 24010294]
    'BLCA-BL-A13J-TP'    'ZNF780A'         [19]    [ 40578057]
    'BLCA-BL-A13J-TP'    'ZNF780A'         [19]    [ 40578071]
    'BLCA-BL-A13J-TP'    'ACOT7'           [ 1]    [  6390127]
    'BLCA-BL-A13J-TP'    'MCOLN2'          [ 1]    [ 85417779]
    'BLCA-BL-A13J-TP'    'SOAT1'           [ 1]    [179310672]
    'BLCA-BL-A13J-TP'    'REV1'            [ 2]    [100017907]
    'BLCA-BL-A13J-TP'    'RGPD5'           [ 2]    [113127926]
    'BLCA-BL-A13J-TP'    'SERPINE2'        [ 2]    [224866712]
    'BLCA-BL-A13J-TP'    'VGLL4'           [ 3]    [ 11685143]
    'BLCA-BL-A13J-TP'    'NMD3'            [ 3]    [160953120]
    'BLCA-BL-A13J-TP'    'WDR19'           [ 4]    [ 39280429]
    'BLCA-BL-A13J-TP'    'Unknown'         [ 7]    [142223659]
    'BLCA-BL-A13J-TP'    'Unknown'         [ 8]    [ 49826831]
    'BLCA-BL-A13J-TP'    'CA1'             [ 8]    [ 86250862]
    'BLCA-BL-A13J-TP'    'Unknown'         [10]    [ 27620447]
    'BLCA-BL-A13J-TP'    'PAMR1'           [11]    [ 35462851]
    'BLCA-BL-A13J-TP'    'SRRM4'           [12]    [119560098]
    'BLCA-BL-A13J-TP'    'Unknown'         [12]    [120706716]
    'BLCA-BL-A13J-TP'    'TBC1D2B'         [15]    [ 78316386]
    'BLCA-BL-A13J-TP'    'SLC5A11'         [16]    [ 24869749]
    'BLCA-BL-A13J-TP'    'FANCA'           [16]    [ 89845035]
    'BLCA-BL-A13J-TP'    'RPH3AL'          [17]    [    69293]
    'BLCA-BL-A13J-TP'    'Unknown'         [18]    [   112402]
    'BLCA-BL-A13J-TP'    'Unknown'         [20]    [  2056544]
    'BLCA-BL-A13J-TP'    'Unknown'         [22]    [ 20151725]
    'BLCA-BT-A0S7-TP'    'CENPF'           [ 1]    [214782168]
    'BLCA-BT-A0S7-TP'    'FAM86D'          [ 3]    [ 75476630]
    'BLCA-BT-A0S7-TP'    'MUC4'            [ 3]    [195505836]
    'BLCA-BT-A0S7-TP'    'LOC650368'       [11]    [  3427845]
    'BLCA-BT-A0S7-TP'    'POTEC'           [18]    [ 14513675]
    'BLCA-BT-A0S7-TP'    'FUCA1'           [ 1]    [ 24175456]
    'BLCA-BT-A0S7-TP'    'OR2T35'          [ 1]    [248801602]
    'BLCA-BT-A0S7-TP'    'Unknown'         [ 2]    [ 97691619]
    'BLCA-BT-A0S7-TP'    'GUSBP1'          [ 5]    [ 21344713]
    'BLCA-BT-A0S7-TP'    'SORCS1'          [10]    [108850678]
    'BLCA-BT-A0S7-TP'    'CLEC16A'         [16]    [ 11064866]
    'BLCA-BT-A0S7-TP'    'DHRS7C'          [17]    [  9683469]
    'BLCA-BT-A0S7-TP'    'TRIM16'          [17]    [ 15496417]
    'BLCA-BT-A0S7-TP'    'NXPH3'           [17]    [ 47655757]
    'BLCA-BT-A0S7-TP'    'DLGAP1'          [18]    [  3581662]
    'BLCA-BT-A0S7-TP'    'BAGE2'           [21]    [ 11085863]
    'BLCA-BT-A0YX-TP'    'MST1P9'          [ 1]    [ 17085908]
    'BLCA-BT-A0YX-TP'    'ATR'             [ 3]    [142170203]
    'BLCA-BT-A0YX-TP'    'SDHAP1'          [ 3]    [195692349]
    'BLCA-BT-A0YX-TP'    'Unknown'         [15]    [ 82620400]
    'BLCA-BT-A0YX-TP'    'YBX1'            [ 1]    [ 43162183]
    'BLCA-BT-A0YX-TP'    'CTNNA2'          [ 2]    [ 79423063]
    'BLCA-BT-A0YX-TP'    'NOP58'           [ 2]    [203149027]
    'BLCA-BT-A0YX-TP'    'SDHAP1'          [ 3]    [195711343]
    'BLCA-BT-A0YX-TP'    'MIR606'          [10]    [ 77312184]
    'BLCA-BT-A0YX-TP'    'Unknown'         [10]    [134206019]
    'BLCA-BT-A0YX-TP'    'SLCO3A1'         [15]    [ 92638333]
    'BLCA-BT-A0YX-TP'    'CNTNAP4'         [16]    [ 76482606]
    'BLCA-BT-A0YX-TP'    'DHX8'            [17]    [ 41585987]
    'BLCA-BT-A0YX-TP'    'HOXB5'           [17]    [ 46671172]
    'BLCA-BT-A0YX-TP'    'NAPG'            [18]    [ 10548537]
    'BLCA-BT-A20J-TP'    'PCDHA10'         [ 5]    [140237249]
    'BLCA-BT-A20J-TP'    'CNTNAP2'         [ 7]    [147183114]
    'BLCA-BT-A20J-TP'    'DDX12'           [12]    [  9580293]
    'BLCA-BT-A20J-TP'    'POLR3B'          [12]    [106820987]
    'BLCA-BT-A20J-TP'    'CYP2D6'          [22]    [ 42522550]
    'BLCA-BT-A20J-TP'    'MACF1'           [ 1]    [ 39799059]
    'BLCA-BT-A20J-TP'    'GON4L'           [ 1]    [155774575]
    'BLCA-BT-A20J-TP'    'Unknown'         [ 6]    [107231882]
    'BLCA-BT-A20J-TP'    'KIF27'           [ 9]    [ 86457387]
    'BLCA-BT-A20J-TP'    'CCDC60'          [12]    [119957682]
    'BLCA-BT-A20J-TP'    'CPB2'            [13]    [ 46641324]
    'BLCA-BT-A20J-TP'    'SNX6'            [14]    [ 35037841]
    'BLCA-BT-A20J-TP'    'KIAA0182'        [16]    [ 85701506]
    'BLCA-BT-A20J-TP'    'TBX4'            [17]    [ 59557756]
    'BLCA-BT-A20J-TP'    'CCDC57'          [17]    [ 80152185]
    'BLCA-BT-A20J-TP'    'RBL1'            [20]    [ 35696195]
    'BLCA-BT-A20J-TP'    'COL6A1'          [21]    [ 47410424]
    'BLCA-BT-A20N-TP'    'WASH2P'          [ 2]    [114355998]
    'BLCA-BT-A20N-TP'    'ZNF814'          [19]    [ 58385546]
    'BLCA-BT-A20N-TP'    'LOC96610'        [22]    [ 23006961]
    'BLCA-BT-A20N-TP'    'CYP2D7P1'        [22]    [ 42538870]
    'BLCA-BT-A20N-TP'    'RIF1'            [ 2]    [152292281]
    'BLCA-BT-A20N-TP'    'ADCY5'           [ 3]    [123066917]
    'BLCA-BT-A20N-TP'    'SNTB1'           [ 8]    [121823372]
    'BLCA-BT-A20N-TP'    'CHKA'            [11]    [ 67831875]
    'BLCA-BT-A20N-TP'    'NCAM1'           [11]    [112832392]
    'BLCA-BT-A20N-TP'    'COL4A2'          [13]    [111164629]
    'BLCA-BT-A20N-TP'    'HECTD1'          [14]    [ 31647112]
    'BLCA-BT-A20N-TP'    'TMCO7'           [16]    [ 69059906]
    'BLCA-BT-A20N-TP'    'Unknown'         [18]    [ 15198505]
    'BLCA-BT-A20N-TP'    'HMHA1'           [19]    [  1079503]
    'BLCA-BT-A20O-TP'    'PTPN14'          [ 1]    [214656164]
    'BLCA-BT-A20O-TP'    'SMYD1'           [ 2]    [ 88387407]
    'BLCA-BT-A20O-TP'    'PMS2L11'         [ 7]    [ 76669180]
    'BLCA-BT-A20O-TP'    'NCOA6'           [20]    [ 33345744]
    'BLCA-BT-A20O-TP'    'EPHA2'           [ 1]    [ 16458076]
    'BLCA-BT-A20O-TP'    'LOC200030'       [ 1]    [148349431]
    'BLCA-BT-A20O-TP'    'CACNA2D3'        [ 3]    [ 54420721]
    'BLCA-BT-A20O-TP'    'SDHAP1'          [ 3]    [195711343]
    'BLCA-BT-A20O-TP'    'ANKRD17'         [ 4]    [ 74010556]
    'BLCA-BT-A20O-TP'    'BAZ1B'           [ 7]    [ 72877570]
    'BLCA-BT-A20O-TP'    'ATXN7L1'         [ 7]    [105459892]
    'BLCA-BT-A20O-TP'    'ANXA13'          [ 8]    [124706232]
    'BLCA-BT-A20O-TP'    'VAX1'            [10]    [118897632]
    'BLCA-BT-A20O-TP'    'FRG2B'           [10]    [135439939]
    'BLCA-BT-A20O-TP'    'DDX11'           [12]    [ 31255056]
    'BLCA-BT-A20O-TP'    'ATP2B1'          [12]    [ 90010464]
    'BLCA-BT-A20O-TP'    'PPL'             [16]    [  4938713]
    'BLCA-BT-A20O-TP'    'Unknown'         [16]    [ 32077916]
    'BLCA-BT-A20O-TP'    'Unknown'         [16]    [ 33942128]
    'BLCA-BT-A20O-TP'    'Unknown'         [19]    [ 21817605]
    'BLCA-BT-A20O-TP'    'LAMA5'           [20]    [ 60904422]
    'BLCA-BT-A20P-TP'    'MLLT3'           [ 9]    [ 20414340]
    'BLCA-BT-A20P-TP'    'SLC2A3'          [12]    [  8082245]
    'BLCA-BT-A20P-TP'    'SLC6A10P'        [16]    [ 32890622]
    'BLCA-BT-A20P-TP'    'C3orf19'         [ 3]    [ 14702848]
    'BLCA-BT-A20P-TP'    'Unknown'         [ 3]    [146995077]
    'BLCA-BT-A20P-TP'    'FGFRL1'          [ 4]    [  1019055]
    'BLCA-BT-A20P-TP'    'Unknown'         [ 5]    [ 37086022]
    'BLCA-BT-A20P-TP'    'Unknown'         [ 7]    [ 98408891]
    'BLCA-BT-A20P-TP'    'DDHD2'           [ 8]    [ 38112713]
    'BLCA-BT-A20P-TP'    'NKAIN3'          [ 8]    [ 63502435]
    'BLCA-BT-A20P-TP'    'TOP1MT'          [ 8]    [144403663]
    'BLCA-BT-A20P-TP'    'DOCK1'           [10]    [128821807]
    'BLCA-BT-A20P-TP'    'DNAH10'          [12]    [124315343]
    'BLCA-BT-A20P-TP'    'TUBGCP4'         [15]    [ 43690581]
    'BLCA-BT-A20P-TP'    'RNF111'          [15]    [ 59341944]
    'BLCA-BT-A20P-TP'    'USP7'            [16]    [  8994680]
    'BLCA-BT-A20P-TP'    'DNAH3'           [16]    [ 21071848]
    'BLCA-BT-A20P-TP'    'LLGL2'           [17]    [ 73569700]
    'BLCA-BT-A20P-TP'    'KANK3'           [19]    [  8398950]
    'BLCA-BT-A20P-TP'    'COL9A3'          [20]    [ 61471746]
    'BLCA-BT-A20P-TP'    'SRPX'            [23]    [ 38079976]
    'BLCA-BT-A20Q-TP'    'MST1'            [ 3]    [ 49723526]
    'BLCA-BT-A20Q-TP'    'LOC374491'       [13]    [ 25168432]
    'BLCA-BT-A20Q-TP'    'C21orf45'        [21]    [ 33641252]
    'BLCA-BT-A20Q-TP'    'ITLN1'           [ 1]    [160850095]
    'BLCA-BT-A20Q-TP'    'RFTN2'           [ 2]    [198540354]
    'BLCA-BT-A20Q-TP'    'ATG9A'           [ 2]    [220092238]
    'BLCA-BT-A20Q-TP'    'TMEM192'         [ 4]    [166023937]
    'BLCA-BT-A20Q-TP'    'DDX60L'          [ 4]    [169317284]
    'BLCA-BT-A20Q-TP'    'C7'              [ 5]    [ 40979699]
    'BLCA-BT-A20Q-TP'    'Unknown'         [ 9]    [ 44109097]
    'BLCA-BT-A20Q-TP'    'CAMSAP1'         [ 9]    [138715799]
    'BLCA-BT-A20Q-TP'    'POTEB'           [15]    [ 22074567]
    'BLCA-BT-A20Q-TP'    'Unknown'         [15]    [ 30384348]
    'BLCA-BT-A20Q-TP'    'ST8SIA2'         [15]    [ 93007302]
    'BLCA-BT-A20Q-TP'    'SOLH'            [16]    [   600733]
    'BLCA-BT-A20Q-TP'    'HMHA1'           [19]    [  1079503]
    'BLCA-BT-A20Q-TP'    'TLE2'            [19]    [  3013987]
    'BLCA-BT-A20Q-TP'    'PLIN4'           [19]    [  4510389]
    'BLCA-BT-A20Q-TP'    'PTPRT'           [20]    [ 41306344]
    'BLCA-BT-A20Q-TP'    'KCNQ2'           [20]    [ 62074087]
    'BLCA-BT-A20Q-TP'    'USP25'           [21]    [ 17238522]
    'BLCA-BT-A20T-TP'    'RP9'             [ 7]    [ 33139017]
    'BLCA-BT-A20T-TP'    'EP400'           [12]    [132547087]
    'BLCA-BT-A20T-TP'    'PDXDC1'          [16]    [ 15198590]
    'BLCA-BT-A20T-TP'    'POTEC'           [18]    [ 14513764]
    'BLCA-BT-A20T-TP'    'ZNF814'          [19]    [ 58385546]
    'BLCA-BT-A20T-TP'    'RPRD2'           [ 1]    [150432871]
    'BLCA-BT-A20T-TP'    'C3orf19'         [ 3]    [ 14702848]
    'BLCA-BT-A20T-TP'    'ECT2L'           [ 6]    [139170711]
    'BLCA-BT-A20T-TP'    'BMPER'           [ 7]    [ 34193010]
    'BLCA-BT-A20T-TP'    'Unknown'         [ 7]    [148888416]
    'BLCA-BT-A20T-TP'    'C9orf150'        [ 9]    [ 12775861]
    'BLCA-BT-A20T-TP'    'AQP7'            [ 9]    [ 33395300]
    'BLCA-BT-A20T-TP'    'Unknown'         [10]    [ 30978028]
    'BLCA-BT-A20T-TP'    'HNRNPM'          [19]    [  8520629]
    'BLCA-BT-A20T-TP'    'KDELR1'          [19]    [ 48893549]
    'BLCA-BT-A20T-TP'    'COL9A3'          [20]    [ 61463679]
    'BLCA-BT-A20U-TP'    'FAM47C'          [23]    [ 37028425]
    'BLCA-BT-A20U-TP'    'NOTCH2'          [ 1]    [120612003]
    'BLCA-BT-A20U-TP'    'SNTB1'           [ 8]    [121823372]
    'BLCA-BT-A20U-TP'    'MBL1P'           [10]    [ 81680656]
    'BLCA-BT-A20U-TP'    'Unknown'         [10]    [134206019]
    'BLCA-BT-A20U-TP'    'HOXC12'          [12]    [ 54348571]
    'BLCA-BT-A20U-TP'    'PLEKHG3'         [14]    [ 65204696]
    'BLCA-BT-A20U-TP'    'NOMO3'           [16]    [ 16350133]
    'BLCA-BT-A20U-TP'    'CDH3'            [16]    [ 68684841]
    'BLCA-BT-A20U-TP'    'TNRC6C'          [17]    [ 76087407]
    'BLCA-BT-A20U-TP'    'ANKRD27'         [19]    [ 33132673]
    'BLCA-BT-A20V-TP'    'MLLT3'           [ 9]    [ 20414346]
    'BLCA-BT-A20V-TP'    'LOC653544'       [10]    [135491113]
    'BLCA-BT-A20V-TP'    'KRTAP5-4'        [11]    [  1643335]
    'BLCA-BT-A20V-TP'    'AMAC1L3'         [17]    [  7386366]
    'BLCA-BT-A20V-TP'    'CYP2A7'          [19]    [ 41533104]
    'BLCA-BT-A20V-TP'    'PNKP'            [19]    [ 50370414]
    'BLCA-BT-A20V-TP'    'FRG1B'           [20]    [ 29624081]
    'BLCA-BT-A20V-TP'    'TDRKH'           [ 1]    [151743871]
    'BLCA-BT-A20V-TP'    'WDR26'           [ 1]    [224599406]
    'BLCA-BT-A20V-TP'    'ZNF512'          [ 2]    [ 27824511]
    'BLCA-BT-A20V-TP'    'RGPD1'           [ 2]    [ 88091357]
    'BLCA-BT-A20V-TP'    'LONRF2'          [ 2]    [100916481]
    'BLCA-BT-A20V-TP'    'ANKAR'           [ 2]    [190541843]
    'BLCA-BT-A20V-TP'    'FANCD2'          [ 3]    [ 10088533]
    'BLCA-BT-A20V-TP'    'PBRM1'           [ 3]    [ 52692429]
    'BLCA-BT-A20V-TP'    'RBM27'           [ 5]    [145647320]
    'BLCA-BT-A20V-TP'    'SMAP1'           [ 6]    [ 71508370]
    'BLCA-BT-A20V-TP'    'COL5A1'          [ 9]    [137709530]
    'BLCA-BT-A20V-TP'    'KRTAP5-5'        [11]    [  1651191]
    'BLCA-BT-A20V-TP'    'Unknown'         [12]    [113492284]
    'BLCA-BT-A20V-TP'    'ATF7IP2'         [16]    [ 10532277]
    'BLCA-BT-A20V-TP'    'RPL23'           [17]    [ 37006922]
    'BLCA-BT-A20V-TP'    'TMC6'            [17]    [ 76127849]
    'BLCA-BT-A20V-TP'    'ZNF587'          [19]    [ 58367778]
    'BLCA-BT-A20W-TP'    'MACC1'           [ 7]    [ 20180451]
    'BLCA-BT-A20W-TP'    'TUBBP5'          [ 9]    [141070116]
    'BLCA-BT-A20W-TP'    'CLCNKB'          [ 1]    [ 16372283]
    'BLCA-BT-A20W-TP'    'TCTEX1D1'        [ 1]    [ 67242226]
    'BLCA-BT-A20W-TP'    'Unknown'         [ 1]    [148855840]
    'BLCA-BT-A20W-TP'    'RGS16'           [ 1]    [182569291]
    'BLCA-BT-A20W-TP'    'LGTN'            [ 1]    [206766826]
    'BLCA-BT-A20W-TP'    'SYN2'            [ 3]    [ 12046124]
    'BLCA-BT-A20W-TP'    'RGNEF'           [ 5]    [ 73142411]
    'BLCA-BT-A20W-TP'    'HLA-C'           [ 6]    [ 31239271]
    'BLCA-BT-A20W-TP'    'SPDYE2'          [ 7]    [102197800]
    'BLCA-BT-A20W-TP'    'Unknown'         [ 9]    [ 67331359]
    'BLCA-BT-A20W-TP'    'MCM10'           [10]    [ 13233564]
    'BLCA-BT-A20W-TP'    'MRC1'            [10]    [ 17951300]
    'BLCA-BT-A20W-TP'    'KIF5B'           [10]    [ 32307648]
    'BLCA-BT-A20W-TP'    'VDAC2'           [10]    [ 76989625]
    'BLCA-BT-A20W-TP'    'JAKMIP3'         [10]    [133961636]
    'BLCA-BT-A20W-TP'    'USP30'           [12]    [109519423]
    'BLCA-BT-A20W-TP'    'CIT'             [12]    [120194922]
    'BLCA-BT-A20W-TP'    'Unknown'         [13]    [ 19985459]
    'BLCA-BT-A20W-TP'    'IGDCC3'          [15]    [ 65623124]
    'BLCA-BT-A20W-TP'    'RSL1D1'          [16]    [ 11940251]
    'BLCA-BT-A20W-TP'    'PLSCR3'          [17]    [  7307102]
    'BLCA-BT-A20W-TP'    'UTP18'           [17]    [ 49350959]
    'BLCA-BT-A20W-TP'    'TLK2'            [17]    [ 60593626]
    'BLCA-BT-A20W-TP'    'DLGAP1'          [18]    [  3741135]
    'BLCA-BT-A20W-TP'    'CALR3'           [19]    [ 16590240]
    'BLCA-BT-A20W-TP'    'Unknown'         [21]    [ 11114442]
    'BLCA-BT-A20W-TP'    'GCFC1'           [21]    [ 34133202]
    'BLCA-C4-A0EZ-TP'    'Unknown'         [12]    [    92000]
    'BLCA-C4-A0EZ-TP'    'CLEC18B'         [16]    [ 74445808]
    'BLCA-C4-A0EZ-TP'    'LRRC37A4'        [17]    [ 43587576]
    'BLCA-C4-A0EZ-TP'    'Unknown'         [ 1]    [100288464]
    'BLCA-C4-A0EZ-TP'    'KPNA4'           [ 3]    [160219811]
    'BLCA-C4-A0EZ-TP'    'Unknown'         [ 5]    [ 20095674]
    'BLCA-C4-A0EZ-TP'    'C6orf223'        [ 6]    [ 43970504]
    'BLCA-C4-A0EZ-TP'    'XKR5'            [ 8]    [  6679301]
    'BLCA-C4-A0EZ-TP'    'IARS'            [ 9]    [ 94984623]
    'BLCA-C4-A0EZ-TP'    'BICC1'           [10]    [ 60273190]
    'BLCA-C4-A0EZ-TP'    'TTC7B'           [14]    [ 91233373]
    'BLCA-C4-A0EZ-TP'    'GOT2'            [16]    [ 58767917]
    'BLCA-C4-A0EZ-TP'    'Unknown'         [19]    [ 53703995]
    'BLCA-C4-A0F0-TP'    'SRRM1'           [ 1]    [ 24993374]
    'BLCA-C4-A0F0-TP'    'SRRM1'           [ 1]    [ 24993386]
    'BLCA-C4-A0F0-TP'    'NBPF10'          [ 1]    [145367767]
    'BLCA-C4-A0F0-TP'    'FAHD2B'          [ 2]    [ 97749407]
    'BLCA-C4-A0F0-TP'    'DDX11'           [12]    [ 31242218]
    'BLCA-C4-A0F0-TP'    'Unknown'         [17]    [ 21730916]
    'BLCA-C4-A0F0-TP'    'ZNF814'          [19]    [ 58385546]
    'BLCA-C4-A0F0-TP'    'Unknown'         [ 1]    [ 36872149]
    'BLCA-C4-A0F0-TP'    'FCRL1'           [ 1]    [157774037]
    'BLCA-C4-A0F0-TP'    'NME7'            [ 1]    [169256356]
    'BLCA-C4-A0F0-TP'    'Unknown'         [ 2]    [ 90048090]
    'BLCA-C4-A0F0-TP'    'RQCD1'           [ 2]    [219447953]
    'BLCA-C4-A0F0-TP'    'ATP1B3'          [ 3]    [141632860]
    'BLCA-C4-A0F0-TP'    'STIM2'           [ 4]    [ 27009063]
    'BLCA-C4-A0F0-TP'    'UBA6'            [ 4]    [ 68531131]
    'BLCA-C4-A0F0-TP'    'INTS1'           [ 7]    [  1546840]
    'BLCA-C4-A0F0-TP'    'EBF2'            [ 8]    [ 25708397]
    'BLCA-C4-A0F0-TP'    'MRPL13'          [ 8]    [121426426]
    'BLCA-C4-A0F0-TP'    'BICC1'           [10]    [ 60273190]
    'BLCA-C4-A0F0-TP'    'MMP12'           [11]    [102738795]
    'BLCA-C4-A0F0-TP'    'Unknown'         [13]    [111293683]
    'BLCA-C4-A0F0-TP'    'RTN1'            [14]    [ 60096966]
    'BLCA-C4-A0F0-TP'    'ERH'             [14]    [ 69847046]
    'BLCA-C4-A0F0-TP'    'Unknown'         [14]    [103770193]
    'BLCA-C4-A0F0-TP'    'HCRT'            [17]    [ 40336501]
    'BLCA-C4-A0F0-TP'    'RECQL5'          [17]    [ 73626918]
    'BLCA-C4-A0F0-TP'    'ATP8B1'          [18]    [ 55328853]
    'BLCA-C4-A0F0-TP'    'PLCB1'           [20]    [  8731631]
    'BLCA-C4-A0F1-TP'    'WASH2P'          [ 2]    [114355998]
    'BLCA-C4-A0F1-TP'    'KPNA4'           [ 3]    [160219829]
    'BLCA-C4-A0F1-TP'    'LRRC37A4'        [17]    [ 43587708]
    'BLCA-C4-A0F1-TP'    'SLC12A7'         [ 5]    [  1093609]
    'BLCA-C4-A0F1-TP'    'MARCH6'          [ 5]    [ 10424069]
    'BLCA-C4-A0F1-TP'    'AVL9'            [ 7]    [ 33066270]
    'BLCA-C4-A0F1-TP'    'TAF2'            [ 8]    [120793175]
    'BLCA-C4-A0F1-TP'    'NOX4'            [11]    [ 89106446]
    'BLCA-C4-A0F1-TP'    'Unknown'         [12]    [132152375]
    'BLCA-C4-A0F1-TP'    'DHRS12'          [13]    [ 52343500]
    'BLCA-C4-A0F1-TP'    'Unknown'         [15]    [ 76039782]
    'BLCA-C4-A0F1-TP'    'LGALS9B'         [17]    [ 20370782]
    'BLCA-C4-A0F1-TP'    'Unknown'         [17]    [ 20978234]
    'BLCA-C4-A0F1-TP'    'CACNA1A'         [19]    [ 13445408]
    'BLCA-C4-A0F1-TP'    'Unknown'         [20]    [ 49068651]
    'BLCA-C4-A0F6-TP'    'LOC200030'       [ 1]    [148251713]
    'BLCA-C4-A0F6-TP'    'Unknown'         [ 1]    [143391935]
    'BLCA-C4-A0F6-TP'    'NUP133'          [ 1]    [229631436]
    'BLCA-C4-A0F6-TP'    'TRAK2'           [ 2]    [202262685]
    'BLCA-C4-A0F6-TP'    'C2orf67'         [ 2]    [210894384]
    'BLCA-C4-A0F6-TP'    'Unknown'         [ 2]    [234699319]
    'BLCA-C4-A0F6-TP'    'CGGBP1'          [ 3]    [ 88104473]
    'BLCA-C4-A0F6-TP'    'COL6A6'          [ 3]    [130367860]
    'BLCA-C4-A0F6-TP'    'Unknown'         [ 4]    [104444929]
    'BLCA-C4-A0F6-TP'    'PET112L'         [ 4]    [152625233]
    'BLCA-C4-A0F6-TP'    'Unknown'         [ 5]    [ 32848539]
    'BLCA-C4-A0F6-TP'    'CAMK2B'          [ 7]    [ 44294370]
    'BLCA-C4-A0F6-TP'    'CHCHD3'          [ 7]    [132719268]
    'BLCA-C4-A0F6-TP'    'MCPH1'           [ 8]    [  6272541]
    'BLCA-C4-A0F6-TP'    'Unknown'         [ 8]    [134727338]
    'BLCA-C4-A0F6-TP'    'TOP1MT'          [ 8]    [144403663]
    'BLCA-C4-A0F6-TP'    'Unknown'         [14]    [ 95044018]
    'BLCA-C4-A0F6-TP'    'LOC100132247'    [16]    [ 22545540]
    'BLCA-C4-A0F6-TP'    'Unknown'         [16]    [ 33365420]
    'BLCA-C4-A0F6-TP'    'Unknown'         [17]    [ 25289230]
    'BLCA-C4-A0F6-TP'    'GALR1'           [18]    [ 74964874]
    'BLCA-C4-A0F6-TP'    'PRKCG'           [19]    [ 54396035]
    'BLCA-C4-A0F6-TP'    'SSX8'            [23]    [ 52662823]
    'BLCA-C4-A0F6-TP'    'Unknown'         [23]    [100165575]
    'BLCA-C4-A0F7-TP'    'MUC4'            [ 3]    [195505836]
    'BLCA-C4-A0F7-TP'    'AGAP6'           [10]    [ 51748381]
    'BLCA-C4-A0F7-TP'    'Unknown'         [ 1]    [242995203]
    'BLCA-C4-A0F7-TP'    'STK17B'          [ 2]    [197028246]
    'BLCA-C4-A0F7-TP'    'KLHL30'          [ 2]    [239053011]
    'BLCA-C4-A0F7-TP'    'NMD3'            [ 3]    [160953120]
    'BLCA-C4-A0F7-TP'    'C7orf10'         [ 7]    [ 40192302]
    'BLCA-C4-A0F7-TP'    'Unknown'         [ 7]    [ 67206114]
    'BLCA-C4-A0F7-TP'    'VAX1'            [10]    [118897631]
    'BLCA-C4-A0F7-TP'    'KDM2B'           [12]    [122018158]
    'BLCA-C4-A0F7-TP'    'HECTD1'          [14]    [ 31647112]
    'BLCA-C4-A0F7-TP'    'AK7'             [14]    [ 96953557]
    'BLCA-C4-A0F7-TP'    'Unknown'         [14]    [ 98311208]
    'BLCA-C4-A0F7-TP'    'Unknown'         [19]    [  3131446]
    'BLCA-C4-A0F7-TP'    'ARHGEF18'        [19]    [  7515569]
    'BLCA-C4-A0F7-TP'    'NFIX'            [19]    [ 13105127]
    'BLCA-C4-A0F7-TP'    'ANKRD27'         [19]    [ 33132673]
    'BLCA-C4-A0F7-TP'    'KCNQ2'           [20]    [ 62074087]
    'BLCA-C4-A0F7-TP'    'BAGE2'           [21]    [ 11085863]
    'BLCA-CF-A1HR-TP'    'PTMA'            [ 2]    [232577877]
    'BLCA-CF-A1HR-TP'    'LOC100133050'    [ 5]    [ 99715528]
    'BLCA-CF-A1HR-TP'    'TUBB2C'          [ 9]    [140137426]
    'BLCA-CF-A1HR-TP'    'CLEC18C'         [16]    [ 70065826]
    'BLCA-CF-A1HR-TP'    'FRG1B'           [20]    [ 29628243]
    'BLCA-CF-A1HR-TP'    'FRG1B'           [20]    [ 29628245]
    'BLCA-CF-A1HR-TP'    'NBPF1'           [ 1]    [ 16894081]
    'BLCA-CF-A1HR-TP'    'RFT1'            [ 3]    [ 53139428]
    'BLCA-CF-A1HR-TP'    'RFC1'            [ 4]    [ 39304919]
    'BLCA-CF-A1HR-TP'    'MOBKL2B'         [ 9]    [ 27359377]
    'BLCA-CF-A1HR-TP'    'PARD3'           [10]    [ 34964519]
    'BLCA-CF-A1HR-TP'    'MBL1P'           [10]    [ 81680656]
    'BLCA-CF-A1HR-TP'    'ZNF259'          [11]    [116652729]
    'BLCA-CF-A1HR-TP'    'AP1G2'           [14]    [ 24034602]
    'BLCA-CF-A1HR-TP'    'HGS'             [17]    [ 79663194]
    'BLCA-CF-A1HR-TP'    'Unknown'         [18]    [   112402]
    'BLCA-CF-A1HR-TP'    'INSR'            [19]    [  7153023]
    'BLCA-CF-A1HS-TP'    'PTPN14'          [ 1]    [214656740]
    'BLCA-CF-A1HS-TP'    'CCDC144NL'       [17]    [ 20768623]
    'BLCA-CF-A1HS-TP'    'C1orf57'         [ 1]    [233091296]
    'BLCA-CF-A1HS-TP'    'OR2T35'          [ 1]    [248801602]
    'BLCA-CF-A1HS-TP'    'FRAS1'           [ 4]    [ 79101922]
    'BLCA-CF-A1HS-TP'    'LOC100132354'    [ 6]    [ 43872656]
    'BLCA-CF-A1HS-TP'    'Unknown'         [ 7]    [ 98409055]
    'BLCA-CF-A1HS-TP'    'CBWD6'           [ 9]    [ 69207122]
    'BLCA-CF-A1HS-TP'    'CELF2'           [10]    [ 11363483]
    'BLCA-CF-A1HS-TP'    'RTKN2'           [10]    [ 64005582]
    'BLCA-CF-A1HS-TP'    'GGA2'            [16]    [ 23498305]
    'BLCA-CF-A1HS-TP'    'RYR1'            [19]    [ 39018582]
    'BLCA-CF-A1HS-TP'    'GRIK1'           [21]    [ 30963767]
    'BLCA-CU-A0YN-TP'    'WASH2P'          [ 2]    [114355998]
    'BLCA-CU-A0YN-TP'    'PELI1'           [ 2]    [ 64331637]
    'BLCA-CU-A0YN-TP'    'TANC1'           [ 2]    [159992561]
    'BLCA-CU-A0YN-TP'    'Unknown'         [ 3]    [ 26990550]
    'BLCA-CU-A0YN-TP'    'BTN2A3'          [ 6]    [ 26430816]
    'BLCA-CU-A0YN-TP'    'LRRC1'           [ 6]    [ 53787794]
    'BLCA-CU-A0YN-TP'    'LOC729156'       [ 7]    [ 66304731]
    'BLCA-CU-A0YN-TP'    'Unknown'         [ 9]    [ 92908435]
    'BLCA-CU-A0YN-TP'    'Unknown'         [11]    [ 42010406]
    'BLCA-CU-A0YN-TP'    'Unknown'         [13]    [ 31652509]
    'BLCA-CU-A0YN-TP'    'HEATR4'          [14]    [ 73986075]
    'BLCA-CU-A0YN-TP'    'Unknown'         [15]    [ 21270386]
    'BLCA-CU-A0YN-TP'    'SCNN1B'          [16]    [ 23354834]
    'BLCA-CU-A0YN-TP'    'USP6'            [17]    [  5035457]
    'BLCA-CU-A0YN-TP'    'SDK2'            [17]    [ 71397914]
    'BLCA-CU-A0YN-TP'    'MYOM1'           [18]    [  3085192]
    'BLCA-CU-A0YN-TP'    'LDLR'            [19]    [ 11233654]
    'BLCA-CU-A0YN-TP'    'Unknown'         [22]    [ 21022401]
    'BLCA-CU-A0YO-TP'    'NOTCH2'          [ 1]    [120612034]
    'BLCA-CU-A0YO-TP'    'HLA-H'           [ 6]    [ 29856977]
    'BLCA-CU-A0YO-TP'    'INPPL1'          [11]    [ 71949087]
    'BLCA-CU-A0YO-TP'    'PTCHD2'          [ 1]    [ 11587001]
    'BLCA-CU-A0YO-TP'    'NOTCH2'          [ 1]    [120612003]
    'BLCA-CU-A0YO-TP'    'Unknown'         [ 1]    [223352880]
    'BLCA-CU-A0YO-TP'    'ZNF512'          [ 2]    [ 27824511]
    'BLCA-CU-A0YO-TP'    'GALNT5'          [ 2]    [158165415]
    'BLCA-CU-A0YO-TP'    'LRP2'            [ 2]    [170038236]
    'BLCA-CU-A0YO-TP'    'Unknown'         [ 3]    [149701114]
    'BLCA-CU-A0YO-TP'    'WBSCR17'         [ 7]    [ 70786853]
    'BLCA-CU-A0YO-TP'    'FBLN5'           [14]    [ 92347465]
    'BLCA-CU-A0YO-TP'    'UBTF'            [17]    [ 42284469]
    'BLCA-CU-A0YO-TP'    'NPEPPS'          [17]    [ 45646982]
    'BLCA-CU-A0YO-TP'    'Unknown'         [18]    [ 64559977]
    'BLCA-CU-A0YO-TP'    'INSR'            [19]    [  7153066]
    'BLCA-CU-A0YO-TP'    'PLCB1'           [20]    [  8731631]
    'BLCA-CU-A0YO-TP'    'Unknown'         [22]    [ 25627899]
    'BLCA-CU-A0YO-TP'    'PHEX'            [23]    [ 22129815]
    'BLCA-CU-A0YR-TP'    'C1orf21'         [ 1]    [184528723]
    'BLCA-CU-A0YR-TP'    'C1orf57'         [ 1]    [233091276]
    'BLCA-CU-A0YR-TP'    'Unknown'         [ 2]    [ 34041837]
    'BLCA-CU-A0YR-TP'    'TBC1D14'         [ 4]    [  6998263]
    'BLCA-CU-A0YR-TP'    'STIM2'           [ 4]    [ 27009063]
    'BLCA-CU-A0YR-TP'    'WDR19'           [ 4]    [ 39216394]
    'BLCA-CU-A0YR-TP'    'NSUN2'           [ 5]    [  6623158]
    'BLCA-CU-A0YR-TP'    'TPD52L1'         [ 6]    [125493266]
    'BLCA-CU-A0YR-TP'    'Unknown'         [ 7]    [ 22813177]
    'BLCA-CU-A0YR-TP'    'FER1L6'          [ 8]    [125034095]
    'BLCA-CU-A0YR-TP'    'SRRM4'           [12]    [119560098]
    'BLCA-CU-A0YR-TP'    'LOC374491'       [13]    [ 25169014]
    'BLCA-CU-A0YR-TP'    'ALDH3A2'         [17]    [ 19576700]
    'BLCA-CU-A0YR-TP'    'Unknown'         [19]    [  3131446]
    'BLCA-CU-A0YR-TP'    'ZNF512B'         [20]    [ 62602059]
    'BLCA-CU-A0YR-TP'    'Unknown'         [21]    [ 11114453]
    'BLCA-CU-A0YR-TP'    'Unknown'         [22]    [ 20151841]
    'BLCA-CU-A0YR-TP'    'TAB1'            [22]    [ 39815792]
    'BLCA-DK-A1A3-TP'    'COLQ'            [ 3]    [ 15563255]
    'BLCA-DK-A1A3-TP'    'SDHAP2'          [ 3]    [195400728]
    'BLCA-DK-A1A3-TP'    'LOC442421'       [ 9]    [ 66500841]
    'BLCA-DK-A1A3-TP'    'Unknown'         [16]    [ 70268158]
    'BLCA-DK-A1A3-TP'    'Unknown'         [17]    [ 21730916]
    'BLCA-DK-A1A3-TP'    'LRRC39'          [ 1]    [100625161]
    'BLCA-DK-A1A3-TP'    'NBPF9'           [ 1]    [145109312]
    'BLCA-DK-A1A3-TP'    'Unknown'         [ 3]    [ 32677110]
    'BLCA-DK-A1A3-TP'    'TEX264'          [ 3]    [ 51728004]
    'BLCA-DK-A1A3-TP'    'LPP'             [ 3]    [188295546]
    'BLCA-DK-A1A3-TP'    'Unknown'         [ 6]    [ 15125363]
    'BLCA-DK-A1A3-TP'    'ANKRD20A4'       [ 9]    [ 69420250]
    'BLCA-DK-A1A3-TP'    'ARFGAP2'         [11]    [ 47189417]
    'BLCA-DK-A1A3-TP'    'Unknown'         [12]    [ 80650276]
    'BLCA-DK-A1A3-TP'    'WDR72'           [15]    [ 53906143]
    'BLCA-DK-A1A3-TP'    'Unknown'         [16]    [ 21902060]
    'BLCA-DK-A1A3-TP'    'ABCA6'           [17]    [ 67081660]
    'BLCA-DK-A1A3-TP'    'RNF24'           [20]    [  3915479]
    'BLCA-DK-A1A3-TP'    'CYTSA'           [22]    [ 24761815]
    'BLCA-DK-A1A5-TP'    'TUBBP5'          [ 9]    [141070139]
    'BLCA-DK-A1A5-TP'    'GOLGA6L10'       [15]    [ 82635117]
    'BLCA-DK-A1A5-TP'    'PDXDC1'          [16]    [ 15198590]
    'BLCA-DK-A1A5-TP'    'C21orf45'        [21]    [ 33641251]
    'BLCA-DK-A1A5-TP'    'GGT3P'           [22]    [ 18769145]
    'BLCA-DK-A1A5-TP'    'MACF1'           [ 1]    [ 39770237]
    'BLCA-DK-A1A5-TP'    'NBPF9'           [ 1]    [145109312]
    'BLCA-DK-A1A5-TP'    'LOC200030'       [ 1]    [148349431]
    'BLCA-DK-A1A5-TP'    'CR1L'            [ 1]    [207842739]
    'BLCA-DK-A1A5-TP'    'Unknown'         [ 2]    [175585079]
    'BLCA-DK-A1A5-TP'    'N4BP2'           [ 4]    [ 40143745]
    'BLCA-DK-A1A5-TP'    'GLP1R'           [ 6]    [ 39053973]
    'BLCA-DK-A1A5-TP'    'Unknown'         [ 7]    [ 45923555]
    'BLCA-DK-A1A5-TP'    'KIAA0146'        [ 8]    [ 48614649]
    'BLCA-DK-A1A5-TP'    'TOP1MT'          [ 8]    [144403663]
    'BLCA-DK-A1A5-TP'    'FGF3'            [11]    [ 69628573]
    'BLCA-DK-A1A5-TP'    'ANO1'            [11]    [ 69971958]
    'BLCA-DK-A1A5-TP'    'LETMD1'          [12]    [ 51449448]
    'BLCA-DK-A1A5-TP'    'TIMELESS'        [12]    [ 56822987]
    'BLCA-DK-A1A5-TP'    'ADAM6'           [14]    [106877447]
    'BLCA-DK-A1A5-TP'    'NUSAP1'          [15]    [ 41672441]
    'BLCA-DK-A1A5-TP'    'ZNF710'          [15]    [ 90617221]
    'BLCA-DK-A1A5-TP'    'NAE1'            [16]    [ 66839541]
    'BLCA-DK-A1A5-TP'    'LLGL2'           [17]    [ 73569700]
    'BLCA-DK-A1A5-TP'    'FOXK2'           [17]    [ 80544277]
    'BLCA-DK-A1A5-TP'    'AP2A1'           [19]    [ 50309616]
    'BLCA-DK-A1A5-TP'    'GGT1'            [22]    [ 25016169]
    'BLCA-DK-A1A7-TP'    'MST1P2'          [ 1]    [ 16974868]
    'BLCA-DK-A1A7-TP'    'SDHAP2'          [ 3]    [195400795]
    'BLCA-DK-A1A7-TP'    'MACC1'           [ 7]    [ 20180449]
    'BLCA-DK-A1A7-TP'    'BAG4'            [ 8]    [ 38068103]
    'BLCA-DK-A1A7-TP'    'AQP7'            [ 9]    [ 33385532]
    'BLCA-DK-A1A7-TP'    'TRIM65'          [17]    [ 73887267]
    'BLCA-DK-A1A7-TP'    'Unknown'         [ 1]    [ 20200621]
    'BLCA-DK-A1A7-TP'    'RYR2'            [ 1]    [237819091]
    'BLCA-DK-A1A7-TP'    'Unknown'         [ 2]    [132768083]
    'BLCA-DK-A1A7-TP'    'SDHAP2'          [ 3]    [195400918]
    'BLCA-DK-A1A7-TP'    'IGJ'             [ 4]    [ 71521932]
    'BLCA-DK-A1A7-TP'    'ERAP2'           [ 5]    [ 96219739]
    'BLCA-DK-A1A7-TP'    'C7orf26'         [ 7]    [  6646327]
    'BLCA-DK-A1A7-TP'    'Unknown'         [ 7]    [ 61968770]
    'BLCA-DK-A1A7-TP'    'PKHD1L1'         [ 8]    [110460747]
    'BLCA-DK-A1A7-TP'    'Unknown'         [10]    [ 42383712]
    'BLCA-DK-A1A7-TP'    'Unknown'         [10]    [ 42383716]
    'BLCA-DK-A1A7-TP'    'Unknown'         [10]    [ 42385707]
    'BLCA-DK-A1A7-TP'    'ATF7'            [12]    [ 53926424]
    'BLCA-DK-A1A7-TP'    'KSR2'            [12]    [117965094]
    'BLCA-DK-A1A7-TP'    'Unknown'         [14]    [ 98311208]
    'BLCA-DK-A1A7-TP'    'SLC5A5'          [19]    [ 17994332]
    'BLCA-DK-A1A7-TP'    'TMPRSS6'         [22]    [ 37469387]
    'BLCA-DK-A1AB-TP'    'RGPD5'           [ 2]    [113127775]
    'BLCA-DK-A1AB-TP'    'ARL17A'          [17]    [ 44630635]
    'BLCA-DK-A1AB-TP'    'POTEC'           [18]    [ 14513764]
    'BLCA-DK-A1AB-TP'    'CDK11B'          [ 1]    [  1600092]
    'BLCA-DK-A1AB-TP'    'CLCNKB'          [ 1]    [ 16379015]
    'BLCA-DK-A1AB-TP'    'Unknown'         [ 1]    [207273434]
    'BLCA-DK-A1AB-TP'    'SNTG2'           [ 2]    [  1133189]
    'BLCA-DK-A1AB-TP'    'NOP14'           [ 4]    [  2952613]
    'BLCA-DK-A1AB-TP'    'Unknown'         [ 4]    [ 49121582]
    'BLCA-DK-A1AB-TP'    'CCRN4L'          [ 4]    [139964674]
    'BLCA-DK-A1AB-TP'    'AKD1'            [ 6]    [109818588]
    'BLCA-DK-A1AB-TP'    'SERAC1'          [ 6]    [158579538]
    'BLCA-DK-A1AB-TP'    'COBL'            [ 7]    [ 51085963]
    'BLCA-DK-A1AB-TP'    'Unknown'         [ 9]    [ 66545695]
    'BLCA-DK-A1AB-TP'    'MCM10'           [10]    [ 13233564]
    'BLCA-DK-A1AB-TP'    'SLC18A2'         [10]    [119013080]
    'BLCA-DK-A1AB-TP'    'CDADC1'          [13]    [ 49830213]
    'BLCA-DK-A1AB-TP'    'Unknown'         [16]    [ 32176904]
    'BLCA-DK-A1AB-TP'    'Unknown'         [17]    [ 53285938]
    'BLCA-DK-A1AB-TP'    'CIB3'            [19]    [ 16283777]
    'BLCA-DK-A1AB-TP'    'KRTAP10-9'       [21]    [ 46048132]
    'BLCA-DK-A1AB-TP'    'TAB1'            [22]    [ 39815792]

  Column 5

    'G'               
    'T'               
    'G'               
    'A'               
    'TA'              
    '-'               
    '-'               
    'A'               
    '-'               
    '-'               
    '-'               
    'T'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    'AC'              
    'A'               
    '-'               
    '-'               
    'G'               
    'A'               
    'C'               
    'G'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    'AAAGAAAG'        
    '-'               
    '-'               
    '-'               
    'C'               
    'T'               
    'CA'              
    '-'               
    '-'               
    'T'               
    'C'               
    'G'               
    'G'               
    'A'               
    'G'               
    'T'               
    'A'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    'A'               
    'A'               
    '-'               
    '-'               
    '-'               
    '-'               
    'TT'              
    '-'               
    '-'               
    'A'               
    '-'               
    'TGAA'            
    'A'               
    'TTTCT'           
    '-'               
    '-'               
    'ACC'             
    'A'               
    'G'               
    'C'               
    'T'               
    'C'               
    '-'               
    'CA'              
    'A'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    'A'               
    'C'               
    'G'               
    'G'               
    'A'               
    'C'               
    '-'               
    '-'               
    '-'               
    'T'               
    '-'               
    'G'               
    '-'               
    '-'               
    '-'               
    'G'               
    '-'               
    'C'               
    'G'               
    'G'               
    'T'               
    'A'               
    'G'               
    '-'               
    '-'               
    'T'               
    '-'               
    'A'               
    '-'               
    'GTCCA'           
    '-'               
    'TT'              
    '-'               
    '-'               
    'G'               
    'T'               
    'T'               
    'C'               
    'T'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    'G'               
    'G'               
    'A'               
    'T'               
    'A'               
    'G'               
    'TTT'             
    'T'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    'A'               
    '-'               
    '-'               
    'TTT'             
    'TTT'             
    'T'               
    '-'               
    '-'               
    'A'               
    'G'               
    'G'               
    'T'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    'TT'              
    '-'               
    '-'               
    'G'               
    '-'               
    'CT'              
    '-'               
    'T'               
    'C'               
    'C'               
    'A'               
    '-'               
    '-'               
    '-'               
    'A'               
    '-'               
    'A'               
    'T'               
    'AC'              
    'C'               
    'T'               
    'T'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    'C'               
    'A'               
    'T'               
    'T'               
    'T'               
    '-'               
    'T'               
    '-'               
    'TA'              
    '-'               
    'GGCGGCGGC'       
    '-'               
    '-'               
    'T'               
    '-'               
    '-'               
    'G'               
    '-'               
    '-'               
    '-'               
    'G'               
    'A'               
    '-'               
    'T'               
    '-'               
    'A'               
    '-'               
    'A'               
    'T'               
    'G'               
    'A'               
    'A'               
    'G'               
    'T'               
    '-'               
    'T'               
    'TTTTG'           
    '-'               
    'GG'              
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    'A'               
    '-'               
    '-'               
    'G'               
    '-'               
    'G'               
    'A'               
    '-'               
    '-'               
    '-'               
    'TT'              
    '-'               
    '-'               
    'T'               
    '-'               
    '-'               
    '-'               
    '-'               
    'T'               
    'A'               
    '-'               
    'TGAACA'          
    'GC'              
    '-'               
    '-'               
    'TCTA'            
    'A'               
    '-'               
    'T'               
    '-'               
    'C'               
    'A'               
    '-'               
    '-'               
    'T'               
    'C'               
    'G'               
    '-'               
    '-'               
    'AAGAAAGG'        
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    'A'               
    'T'               
    'A'               
    'T'               
    'G'               
    'T'               
    'T'               
    'CCTT'            
    '-'               
    'A'               
    '-'               
    '-'               
    'A'               
    '-'               
    'T'               
    '-'               
    '-'               
    '-'               
    '-'               
    'T'               
    'ATCG'            
    '-'               
    '-'               
    '-'               
    '-'               
    'TG'              
    '-'               
    'GAGTGCA'         
    'G'               
    'T'               
    'G'               
    'GGGCGGGGACT'     
    '-'               
    '-'               
    '-'               
    '-'               
    'AAA'             
    '-'               
    '-'               
    'TC'              
    '-'               
    '-'               
    '-'               
    'C'               
    'TG'              
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    'T'               
    '-'               
    '-'               
    '-'               
    '-'               
    'TTT'             
    '-'               
    '-'               
    '-'               
    'ATGG'            
    'GAGCGTCTGCGGG'   
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    'C'               
    'C'               
    'GAAA'            
    '-'               
    'GAAGGAAA'        
    'A'               
    'T'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    'C'               
    'G'               
    'T'               
    'T'               
    'C'               
    'C'               
    'A'               
    '-'               
    '-'               
    '-'               
    '-'               
    'T'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    'G'               
    'G'               
    '-'               
    'CA'              
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    'A'               
    'TTT'             
    'A'               
    '-'               
    'G'               
    '-'               
    '-'               
    '-'               
    'A'               
    '-'               
    '-'               
    '-'               
    'AAAG'            
    '-'               
    '-'               
    '-'               
    'A'               
    '-'               
    'C'               
    '-'               
    '-'               
    '-'               
    'G'               
    'G'               
    'A'               
    'T'               
    '-'               
    'CTTCCTTT'        
    'TTTTG'           
    'T'               
    '-'               
    '-'               
    '-'               
    'CACC'            
    '-'               
    '-'               
    'AAGGAAGGAAGGAAGA'
    '-'               
    'GAGTGCA'         
    '-'               
    '-'               
    'CCTT'            
    'T'               
    'CCTCC'           
    '-'               
    '-'               
    '-'               
    '-'               
    'T'               
    'C'               
    'T'               
    '-'               
    'TAG'             
    '-'               
    '-'               
    '-'               
    '-'               
    'CAC'             
    '-'               
    'C'               
    'G'               
    'T'               
    'C'               
    'T'               
    '-'               
    'A'               
    'G'               
    '-'               
    '-'               
    '-'               
    'CTTA'            
    '-'               
    'CAAA'            
    'TTAT'            
    'A'               
    'A'               
    '-'               
    '-'               
    'T'               
    'C'               
    'T'               
    'T'               
    'A'               
    'T'               
    'A'               
    'G'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    'A'               
    'T'               
    'TGATCT'          
    'T'               
    'A'               
    '-'               
    'G'               
    'A'               
    '-'               
    'T'               
    'T'               
    'T'               
    'C'               
    'T'               
    'C'               
    'T'               
    '-'               
    '-'               
    'G'               
    'T'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    'A'               
    'G'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    'C'               
    'G'               
    'T'               
    '-'               
    'GGGGCTGGGA'      
    '-'               
    '-'               
    '-'               
    '-'               
    'T'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    '-'               
    'A'               
    '-'               
    'GAAG'            
    '-'               
    '-'               
    '-'               

Removing the following non-coding mutations (based on "type" field):
        3'UTR: [505]
      5'Flank: [51]
        5'UTR: [245]
          IGR: [239]
       Intron: [1317]
          RNA: [140]
    ----TOTAL: [2497]
Not enforcing any target list.
Collapsing adjacent mutations:
convert_chr: assuming human for chrX/chrY

    2 SNPs to one DNP (guessing "Missense"): [41]
                                  ----TOTAL: [41]

Genes affected:
        ASTN1: [1]
         CD27: [1]
         CDH8: [1]
       CELSR3: [1]
       CORO2B: [1]
       CRYBB1: [1]
          FGA: [1]
          FLG: [1]
      FOXRED2: [1]
        GANAB: [1]
       GXYLT2: [1]
        HERC2: [1]
       INPP4B: [1]
        ITIH5: [1]
        MECOM: [1]
        MIER1: [1]
       MIPOL1: [1]
        MYO5B: [1]
        NTRK1: [1]
        NXPH2: [1]
        OPCML: [1]
       OR51A7: [1]
        OR6K2: [1]
         OXR1: [1]
        PKHD1: [1]
         PLP2: [1]
       PRPF31: [1]
    RPL23AP32: [1]
        S1PR1: [1]
         SIM1: [1]
      SLC20A1: [1]
      SLC26A9: [1]
         ST7L: [1]
         TP53: [1]
      Unknown: [1]
        VASH1: [1]
        ZFP57: [1]
       ZNF283: [1]
       ZNF317: [1]
     C6orf222: [2]
    ----TOTAL: [41]

Patients affected:
    BLCA-BL-A13I-TP: [1]
    BLCA-BL-A13J-TP: [1]
    BLCA-BT-A0S7-TP: [1]
    BLCA-BT-A20T-TP: [1]
    BLCA-BT-A20U-TP: [1]
    BLCA-C4-A0EZ-TP: [1]
    BLCA-C4-A0F1-TP: [1]
    BLCA-BT-A0YX-TP: [2]
    BLCA-CF-A1HS-TP: [2]
    BLCA-BT-A20J-TP: [3]
    BLCA-BT-A20O-TP: [4]
    BLCA-CU-A0YN-TP: [4]
    BLCA-CU-A0YR-TP: [4]
    BLCA-DK-A1A3-TP: [5]
    BLCA-BT-A20N-TP: [10]
          ----TOTAL: [41]
convert_chr: assuming human for chrX/chrY
Collapsed 7326 muts to 7285 muts
Getting context: 
Done.
Saved BLCA-TP.mutation_preprocessing_report.txt
Saved BLCA-TP.maf
Total of 28 patients had both MAF and WIG data.
Saved BLCA-TP.patients.txt
Saved BLCA-TP.coverage.prepare.txt
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigPreprocess.90.3705/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285753
mFile: fh_MutSigPreprocess
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigPreprocess.90.3705/fh_MutSigPreprocess /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigPreprocess.90.3705/ -i BLCA-TP -b hg19 -t /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_hg19.txt -c /xchip/cga1/annotation/db/tracks/hg19/c65e -bd /xchip/cga1/annotation/db/ucsc/hg19 -cat 4 -maf1 /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/BLCA-TP/2283637/maf1.input.tsv -maflabel1 Broad -maflabel2 WashU -maflabel3 Baylor -wig1 /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/BLCA-TP/2283637/wig1.input.tsv -p /xchip/cga1/reference/mutsig_params/MutSig2.0_cga.pancan.blacklist.v7.hg19.params.txt
