Warning: No display specified.  You will not be able to display graphics on the screen.
fh_MutSigPreprocess
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigPreprocess.90.3705/
-i
BRCA-TP
-b
hg19
-t
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_hg19.txt
-c
/xchip/cga1/annotation/db/tracks/hg19/c65e
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-cat
4
-maf2
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/BRCA-TP/2283692/maf2.input.tsv
-maflabel1
Broad
-maflabel2
WashU
-maflabel3
Baylor
-wig2
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/BRCA-TP/2283692/wig2.input.tsv
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0_cga.pancan.blacklist.v7.hg19.params.txt

                     mutation_blacklist: [1x73 char]
               perform_mutsig2_analysis: 1
     use_sample_specific_mutation_rates: 1
        analyze_silent_nonsilent_ratios: 1
                 sig_calculation_method: 'projection'
                           print_report: 0
                  clip_tumor_from_names: 1
                                  build: 'hg19'
                              build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
             keep_barebones_fields_only: 0
    consolidate_adjacent_muts_threshold: 1
             remove_noncoding_mutations: 1
                    enforce_target_list: 0
                            target_list: [1x69 char]
                     mutation_whitelist: []

Loading MAFs for WashU
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A1-A0SD-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A1-A0SE-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A1-A0SH-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A1-A0SJ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A1-A0SK-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A1-A0SM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A1-A0SO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A04N-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A04P-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A04Q-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A04R-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A04U-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A04V-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A04W-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A04X-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A04Y-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0CL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0CM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0CP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0CQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0CS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0CT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0CU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0CV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0CW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0CX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0CZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0D0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0D1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0D2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0D3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0D4-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0EM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0EN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0EO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0EQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0ER-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0ES-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0ET-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0EU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0EV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0EW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0EX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0EY-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0ST-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0SU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0SV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0SW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0SX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0SY-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0T0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0T1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0T2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0T3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0T4-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0T6-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0T7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0YC-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0YD-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0YF-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0YG-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0YH-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0YI-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0YJ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0YK-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0YL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A2-A0YM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A7-A0CD-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A7-A0CE-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A7-A0CG-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A7-A0CH-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A7-A0CJ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A7-A0D9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A7-A0DA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A7-A0DB-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A7-A13D-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A7-A13F-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A06N-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A06O-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A06P-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A06Q-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A06R-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A06T-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A06U-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A06X-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A06Y-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A06Z-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A075-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A076-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A079-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A07B-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A07C-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A07E-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A07F-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A07G-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A07I-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A07J-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A07L-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A07O-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A07P-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A07R-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A07U-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A07W-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A07Z-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A081-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A082-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A083-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A084-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A085-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A086-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A08A-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A08B-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A08C-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A08F-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A08G-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A08H-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A08I-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A08J-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A08L-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A08O-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A08P-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A08R-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A08T-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A08X-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A08Z-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A090-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A091-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A092-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A093-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A094-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A095-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A096-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A097-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A099-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A09A-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A09B-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A09C-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A09D-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A09G-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A09I-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A09M-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A09N-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A09Q-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A09R-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A09T-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A09V-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A09W-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A09X-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A0A1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A0A2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A0A4-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A0A7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A0A9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A0AB-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A8-A0AD-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A03X-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A03Y-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A041-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A049-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A04A-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A04C-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A04D-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0AJ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0AL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0AM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0AR-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0AS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0AT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0FD-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0FF-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0FJ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0FK-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0FL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0FN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0FS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0FT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0FV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0FW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0FX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0FY-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0FZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0G0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0XL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0XN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0XO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0XP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0XR-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0XS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0XT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0XU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0XV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AN-A0XW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A03L-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A03N-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A03O-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A03P-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A03R-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A03T-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A03U-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A03V-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A0J2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A0J3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A0J4-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A0J6-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A0J7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A0J8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A0J9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A0JA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A0JB-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A0JC-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A0JD-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A0JE-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A0JF-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A0JG-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A0JI-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A0JJ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A0JL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A0JM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A124-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A125-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A126-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A129-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A12A-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A12B-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A12D-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A12E-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A12F-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A12G-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AO-A12H-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AQ-A04H-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AQ-A04J-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AQ-A04L-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A0TP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A0TQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A0TR-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A0TS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A0TT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A0TU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A0TV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A0TW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A0TX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A0TY-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A0TZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A0U0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A0U1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A0U2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A0U3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A0U4-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A1AH-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A1AI-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A1AJ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A1AK-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A1AL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A1AN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A1AO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A1AP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A1AQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A1AR-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A1AS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A1AT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A1AU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A1AV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A1AW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A1AX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AR-A1AY-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0I2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0I5-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0I6-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0I8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0I9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0IA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0IB-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0IC-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0IE-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0IG-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0IH-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0IJ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0IK-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0IM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0IN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0IO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0IP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0IQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0RE-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0RG-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0RH-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0RI-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0RL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0RM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0RN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0RO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0RP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0RQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0RS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0RT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0RU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0RV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0WS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0WT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0WV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0WW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0WX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0WY-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0WZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0X0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0X1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0X4-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0X5-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B6-A0X7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0AU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0AV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0AW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0AY-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0AZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0B0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0B1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0B3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0B4-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0B5-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0B7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0B8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0B9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0BA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0BC-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0BD-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0BF-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0BG-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0BJ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0BL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0BM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0BO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0BP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0BQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0BR-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0BS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0BT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0BV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0BW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0BZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0C0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0C1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0C3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0C7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0DD-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0DE-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0DG-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0DH-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0DI-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0DK-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0DL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0DO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0DP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0DQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0DS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0DT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0DV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0DX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0DZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0E0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0E1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0E2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0E6-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0E7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0E9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0EA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0EB-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0EE-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0EI-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0GY-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0GZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0H0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0H3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0H5-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0H6-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0H7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0H9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0HA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0HB-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0HI-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0HK-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0HL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0HN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0HO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0HP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0HQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0HU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0HW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0HX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0HY-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0RX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0W3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0W4-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0W5-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0W7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A0WA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A18F-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A18H-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A18I-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A18J-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A18K-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A18L-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A18M-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A18N-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A18P-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A18Q-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A18R-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A18S-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A18T-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A18U-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A18V-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A1EO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A1ES-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A1ET-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A1EU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A1EV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A1EW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BH-A1F0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A12K-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A12L-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A12M-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A12N-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A12O-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A12P-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A12Q-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A12T-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A12U-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A12V-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A12W-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A12X-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A12Y-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A12Z-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A130-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A131-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A132-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A133-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A134-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A135-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A137-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A138-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A1HF-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A1HG-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A1HI-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A1HL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A1HM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-C8-A1HN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D8-A13Y-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D8-A13Z-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D8-A140-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D8-A141-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D8-A142-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D8-A143-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D8-A145-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D8-A147-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A105-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A107-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A108-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A109-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A10A-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A10B-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A10C-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A10E-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A10F-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A14N-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A14O-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A14P-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A14Q-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A14R-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A14S-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A14T-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A14V-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A14W-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A14X-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A14Y-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A14Z-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A150-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A152-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A153-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A154-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A155-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A156-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A158-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A159-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A15A-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A15C-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A15D-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A15E-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A15F-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A15G-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A15H-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A15I-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A15J-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A15K-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A15L-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A15M-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A15O-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A15P-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A15R-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A15S-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A15T-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A1AZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A1B0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A1B1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A1B4-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A1B5-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A1B6-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A1BC-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/brca/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_BRCA.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E2-A1BD-01.maf.txt
Concatenating structs...

                         BAM_file: [507]
                           Center: [507]
                       Chromosome: [507]
                     End_position: [507]
                   Entrez_Gene_Id: [507]
                      Hugo_Symbol: [507]
           Match_Norm_Seq_Allele1: [507]
           Match_Norm_Seq_Allele2: [507]
    Match_Norm_Validation_Allele1: [507]
    Match_Norm_Validation_Allele2: [507]
      Matched_Norm_Sample_Barcode: [507]
                  Mutation_Status: [507]
                       NCBI_Build: [507]
                 Reference_Allele: [507]
                            Score: [507]
                  Sequence_Source: [507]
                        Sequencer: [507]
                 Sequencing_Phase: [507]
                   Start_position: [507]
                           Strand: [507]
             Tumor_Sample_Barcode: [507]
                Tumor_Seq_Allele1: [507]
                Tumor_Seq_Allele2: [507]
         Tumor_Validation_Allele1: [507]
         Tumor_Validation_Allele2: [507]
                Validation_Method: [507]
                Validation_Status: [507]
           Variant_Classification: [507]
                     Variant_Type: [507]
              Verification_Status: [507]
                   all_domains_WU: [507]
             amino_acid_change_WU: [507]
             annotation_errors_WU: [507]
                    c_position_WU: [507]
               chromosome_name_WU: [507]
                          dataset: [507]
                         dbSNP_RS: [507]
                 dbSNP_Val_Status: [507]
        deletion_substructures_WU: [507]
                        domain_WU: [507]
                     gene_name_WU: [507]
                          patient: [507]
                     reference_WU: [507]
                         start_WU: [507]
                          stop_WU: [507]
                        strand_WU: [507]
               transcript_name_WU: [507]
             transcript_source_WU: [507]
            transcript_species_WU: [507]
             transcript_status_WU: [507]
            transcript_version_WU: [507]
                      trv_type_WU: [507]
                          type_WU: [507]
                     ucsc_cons_WU: [507]
                       variant_WU: [507]
                        ----TOTAL: [27885]
Calling preprocess_mutations...
WARNING: unknown chromosome(s):
    'GL000192.1'
    'GL000205.1'
    'GL000229.1'
    'MT'

Validation_Status:

      Unknown: [33982]
    ----TOTAL: [33982]
Omitting the following 41 mutations on nonstandard chromosomes:

    GL000192.1: [2]
    GL000205.1: [3]
    GL000229.1: [4]
            MT: [32]
     ----TOTAL: [41]
Applying mutation blacklist:  /xchip/cga1/reference/mutsig_params/pancan_mutation_blacklist.v7.hg19.txt
WARNING: unknown chromosome(s):
    {''}

WARNING: chromosome number(s) out of range for this genome
     0

{Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In convert_chr at 104
  In add_and_convert_simple_fieldnames at 32
  In preprocess_mutations at 77
  In fh_MutSigPreprocess at 200
Omitting the following 190 blacklisted mutations:
  Columns 1 through 4

    'BRCA-A1-A0SJ-TP'    'ENSG00000245549'    [ 1]    [ 16950916]
    'BRCA-A1-A0SK-TP'    'CYP21A2'            [ 6]    [ 32007849]
    'BRCA-A1-A0SK-TP'    'POU4F1'             [13]    [ 79176484]
    'BRCA-A2-A04Q-TP'    'CHAF1A'             [19]    [  4432011]
    'BRCA-A2-A04V-TP'    'LOC100288406'       [12]    [    92627]
    'BRCA-A2-A04W-TP'    'ENSG00000228637'    [10]    [ 42392737]
    'BRCA-A2-A0CP-TP'    'ENSG00000222088'    [24]    [ 10037883]
    'BRCA-A2-A0CU-TP'    'RSBN1L'             [ 7]    [ 77379331]
    'BRCA-A2-A0CX-TP'    'GGT1'               [22]    [ 25023419]
    'BRCA-A2-A0D0-TP'    'CATSPERG'           [19]    [ 38851193]
    'BRCA-A2-A0D0-TP'    'CECR2'              [22]    [ 18022097]
    'BRCA-A2-A0D0-TP'    'FAM166B'            [ 9]    [ 35562393]
    'BRCA-A2-A0D2-TP'    'ADCY5'              [ 3]    [123005626]
    'BRCA-A2-A0D3-TP'    'ENSG00000245549'    [ 1]    [ 16950916]
    'BRCA-A2-A0EM-TP'    'CROCCL1'            [ 1]    [ 16955128]
    'BRCA-A2-A0ES-TP'    'SCHIP1'             [ 3]    [159482272]
    'BRCA-A2-A0EU-TP'    'ENSG00000246060'    [13]    [ 45976793]
    'BRCA-A2-A0EV-TP'    'PCSK9'              [ 1]    [ 55505552]
    'BRCA-A2-A0EX-TP'    'ONECUT2'            [18]    [ 55103477]
    'BRCA-A2-A0ST-TP'    'FIP1L1'             [ 4]    [ 54319248]
    'BRCA-A2-A0ST-TP'    'MSH3'               [ 5]    [ 79950742]
    'BRCA-A2-A0SX-TP'    'TCOF1'              [ 5]    [149776147]
    'BRCA-A2-A0T0-TP'    'ENSG00000245549'    [ 1]    [ 16947282]
    'BRCA-A2-A0T0-TP'    'LOC100289574'       [16]    [ 32191941]
    'BRCA-A2-A0T0-TP'    'PCSK9'              [ 1]    [ 55505552]
    'BRCA-A2-A0T3-TP'    'CROCCL1'            [ 1]    [ 16955128]
    'BRCA-A2-A0T7-TP'    'RNF5P1'             [ 8]    [ 38458371]
    'BRCA-A2-A0YC-TP'    'HLA-DRB5'           [ 6]    [ 32487229]
    'BRCA-A2-A0YF-TP'    'SDK1'               [ 7]    [  4169665]
    'BRCA-A2-A0YG-TP'    'GPR32'              [19]    [ 51274851]
    'BRCA-A2-A0YH-TP'    'TPM2'               [ 9]    [ 35682764]
    'BRCA-A2-A0YL-TP'    'FNBP4'              [11]    [ 47788664]
    'BRCA-A7-A0CD-TP'    'LOC100288406'       [12]    [    92498]
    'BRCA-A7-A0CD-TP'    'MUC5B'              [11]    [  1270178]
    'BRCA-A8-A06N-TP'    'LOC442421'          [ 9]    [ 66500575]
    'BRCA-A8-A06O-TP'    'MST1P9'             [ 1]    [ 17086183]
    'BRCA-A8-A06P-TP'    'OR2T2'              [ 1]    [248616749]
    'BRCA-A8-A06R-TP'    'CRIPAK'             [ 4]    [  1388379]
    'BRCA-A8-A06T-TP'    'GGT3P'              [22]    [ 18778612]
    'BRCA-A8-A06Y-TP'    'OR4C45'             [11]    [ 48373834]
    'BRCA-A8-A07B-TP'    'PRG4'               [ 1]    [186276240]
    'BRCA-A8-A07C-TP'    'LOC100288406'       [12]    [    92498]
    'BRCA-A8-A07E-TP'    'TRIM16'             [17]    [ 15554897]
    'BRCA-A8-A082-TP'    'CROCCL1'            [ 1]    [ 16946407]
    'BRCA-A8-A08A-TP'    'ENSG00000246221'    [ 5]    [ 34192694]
    'BRCA-A8-A08A-TP'    'SFTPC'              [ 8]    [ 22021060]
    'BRCA-A8-A08C-TP'    'GPRIN2'             [10]    [ 46999863]
    'BRCA-A8-A08C-TP'    'LOC100289574'       [16]    [ 32191941]
    'BRCA-A8-A08R-TP'    'TCEB3CL'            [18]    [ 44549025]
    'BRCA-A8-A08T-TP'    'C1orf222'           [ 1]    [  1886756]
    'BRCA-A8-A08T-TP'    'CNTN5'              [11]    [ 99690286]
    'BRCA-A8-A08T-TP'    'CROCCL1'            [ 1]    [ 16946434]
    'BRCA-A8-A097-TP'    'ABCC8'              [11]    [ 17415836]
    'BRCA-A8-A09I-TP'    'ENSG00000245549'    [ 1]    [ 16950638]
    'BRCA-A8-A09N-TP'    'CLEC18B'            [16]    [ 74451960]
    'BRCA-A8-A09V-TP'    'FMN2'               [ 1]    [240370946]
    'BRCA-A8-A09V-TP'    'MUC4'               [ 3]    [195515003]
    'BRCA-A8-A09W-TP'    'ICA1'               [ 7]    [  8196560]
    'BRCA-AN-A03X-TP'    'C15orf51'           [15]    [100340308]
    'BRCA-AN-A04C-TP'    'ZNF799'             [19]    [ 12501907]
    'BRCA-AN-A0AL-TP'    'LOC440300'          [15]    [ 84859462]
    'BRCA-AN-A0AR-TP'    'ENSG00000228637'    [10]    [ 42396414]
    'BRCA-AN-A0FN-TP'    'TNXB'               [ 6]    [ 32063513]
    'BRCA-AN-A0FV-TP'    'GOLGA6L3'           [15]    [ 83014132]
    'BRCA-AN-A0FX-TP'    'C1QTNF7'            [ 4]    [ 15443812]
    'BRCA-AN-A0FY-TP'    'LOC728026'          [ 9]    [ 97109768]
    'BRCA-AN-A0G0-TP'    'ENSG00000245609'    [16]    [ 21831680]
    'BRCA-AN-A0XN-TP'    'LOC440300'          [15]    [ 84859462]
    'BRCA-AN-A0XN-TP'    'MAFA'               [ 8]    [144511954]
    'BRCA-AN-A0XO-TP'    'ARID4B'             [ 1]    [235383188]
    'BRCA-AN-A0XO-TP'    'COL11A1'            [ 1]    [103354428]
    'BRCA-AN-A0XO-TP'    'GPR32'              [19]    [ 51274851]
    'BRCA-AN-A0XT-TP'    'KDM6B'              [17]    [  7750178]
    'BRCA-AN-A0XU-TP'    'SRRM2'              [16]    [  2818050]
    'BRCA-AO-A03R-TP'    'INPPL1'             [11]    [ 71949087]
    'BRCA-AO-A03T-TP'    'PCDHB10'            [ 5]    [140574045]
    'BRCA-AO-A03U-TP'    'C5orf60'            [ 5]    [179071958]
    'BRCA-AO-A03U-TP'    'GPRIN2'             [10]    [ 46999863]
    'BRCA-AO-A0JC-TP'    'KCNJ12'             [17]    [ 21318821]
    'BRCA-AO-A0JC-TP'    'TSKU'               [11]    [ 76506673]
    'BRCA-AO-A0JI-TP'    'TPTE2'              [13]    [ 20006620]
    'BRCA-AO-A12F-TP'    'FBXW10'             [17]    [ 18682505]
    'BRCA-AO-A12F-TP'    'SOX3'               [23]    [139586617]
    'BRCA-AR-A0TP-TP'    'APLP2'              [11]    [129991670]
    'BRCA-AR-A0TS-TP'    'TNXB'               [ 6]    [ 32063896]
    'BRCA-AR-A0TU-TP'    'ENSG00000245569'    [ 5]    [ 14870158]
    'BRCA-AR-A0TU-TP'    'MAST2'              [ 1]    [ 46500613]
    'BRCA-AR-A0TV-TP'    'ENSG00000247869'    [10]    [ 29751492]
    'BRCA-AR-A0TV-TP'    'SRRM5'              [19]    [ 44117582]
    'BRCA-AR-A0TY-TP'    'C11orf95'           [11]    [ 63533335]
    'BRCA-AR-A0TZ-TP'    'DHX37'              [12]    [125465270]
    'BRCA-AR-A0TZ-TP'    'PGR'                [11]    [100999245]
    'BRCA-AR-A1AP-TP'    'ADCY5'              [ 3]    [123166640]
    'BRCA-AR-A1AQ-TP'    'DND1'               [ 5]    [140050940]
    'BRCA-AR-A1AT-TP'    'ENSG00000228637'    [10]    [ 42392701]
    'BRCA-AR-A1AY-TP'    'CROCCL1'            [ 1]    [ 16955128]
    'BRCA-AR-A1AY-TP'    'CSPG4'              [15]    [ 75977920]
    'BRCA-AR-A1AY-TP'    'ENSG00000163386'    [ 1]    [145367229]
    'BRCA-B6-A0I6-TP'    'VCX'                [23]    [  7811910]
    'BRCA-B6-A0I9-TP'    'PTK7'               [ 6]    [ 43111336]
    'BRCA-B6-A0IB-TP'    'MUC4'               [ 3]    [195512343]
    'BRCA-B6-A0IG-TP'    'TNXB'               [ 6]    [ 32017242]
    'BRCA-B6-A0IJ-TP'    'MUC4'               [ 3]    [195509886]
    'BRCA-B6-A0IK-TP'    'SULF2'              [20]    [ 46294864]
    'BRCA-B6-A0IM-TP'    'CCDC66'             [ 3]    [ 56655847]
    'BRCA-B6-A0IN-TP'    'GPR32'              [19]    [ 51274851]
    'BRCA-B6-A0IQ-TP'    'KRTAP4-11'          [17]    [ 39274087]
    'BRCA-B6-A0IQ-TP'    'PVRL2'              [19]    [ 45381598]
    'BRCA-B6-A0RH-TP'    'LOC440300'          [15]    [ 84859462]
    'BRCA-B6-A0RS-TP'    'PMS2CL'             [ 7]    [  6785797]
    'BRCA-B6-A0WS-TP'    'LOC440300'          [15]    [ 84860763]
    'BRCA-B6-A0WT-TP'    'ENSG00000245549'    [ 1]    [ 16950346]
    'BRCA-B6-A0WX-TP'    'C16orf71'           [16]    [  4796953]
    'BRCA-B6-A0WY-TP'    'COL13A1'            [10]    [ 71562437]
    'BRCA-B6-A0X1-TP'    'ENSG00000248029'    [ 1]    [ 17028168]
    'BRCA-B6-A0X5-TP'    'ENSG00000245569'    [ 5]    [ 14870158]
    'BRCA-BH-A0AY-TP'    'RPGR'               [23]    [ 38145181]
    'BRCA-BH-A0B0-TP'    'SAAL1'              [11]    [ 18127558]
    'BRCA-BH-A0B4-TP'    'OTOA'               [16]    [ 21742179]
    'BRCA-BH-A0B7-TP'    'TCERG1'             [ 5]    [145838674]
    'BRCA-BH-A0B8-TP'    'PRIM2'              [ 6]    [ 57499035]
    'BRCA-BH-A0B9-TP'    'ENSG00000188447'    [15]    [ 74356031]
    'BRCA-BH-A0BA-TP'    'TBC1D29'            [17]    [ 28887667]
    'BRCA-BH-A0BC-TP'    'HRNR'               [ 1]    [152185882]
    'BRCA-BH-A0BD-TP'    'MUC4'               [ 3]    [195508115]
    'BRCA-BH-A0BJ-TP'    'KRTAP5-5'           [11]    [  1651157]
    'BRCA-BH-A0BO-TP'    'ENSG00000228637'    [10]    [ 42396414]
    'BRCA-BH-A0BP-TP'    'NUPL2'              [ 7]    [ 23221797]
    'BRCA-BH-A0BQ-TP'    'CACNG8'             [19]    [ 54483190]
    'BRCA-BH-A0BS-TP'    'CCDC66'             [ 3]    [ 56591278]
    'BRCA-BH-A0BW-TP'    'GPR77'              [19]    [ 47845035]
    'BRCA-BH-A0BW-TP'    'KRTAP5-4'           [11]    [  1643225]
    'BRCA-BH-A0BW-TP'    'RPGR'               [23]    [ 38145532]
    'BRCA-BH-A0BZ-TP'    'CYP21A2'            [ 6]    [ 32006896]
    'BRCA-BH-A0C3-TP'    'TMEM132A'           [11]    [ 60695301]
    'BRCA-BH-A0DK-TP'    'CROCCL1'            [ 1]    [ 16946407]
    'BRCA-BH-A0DQ-TP'    'DMXL1'              [ 5]    [118469457]
    'BRCA-BH-A0DS-TP'    'ADAM21'             [14]    [ 70924294]
    'BRCA-BH-A0E7-TP'    'POLR3B'             [12]    [106820975]
    'BRCA-BH-A0E9-TP'    'LOC100131360'       [ 3]    [195723586]
    'BRCA-BH-A0EE-TP'    'LOC100288406'       [12]    [    92627]
    'BRCA-BH-A0GY-TP'    'POTEE'              [ 2]    [131976219]
    'BRCA-BH-A0H6-TP'    'CNTN5'              [11]    [ 99690286]
    'BRCA-BH-A0H6-TP'    'NKAIN4'             [20]    [ 61880169]
    'BRCA-BH-A0H9-TP'    'SHROOM4'            [23]    [ 50350711]
    'BRCA-BH-A0HA-TP'    'MUC5B'              [11]    [  1268579]
    'BRCA-BH-A0HB-TP'    'WASH2P'             [ 2]    [114355998]
    'BRCA-BH-A0HK-TP'    'LOC100288750'       [10]    [ 42608915]
    'BRCA-BH-A0HN-TP'    'AR'                 [23]    [ 66765161]
    'BRCA-BH-A0HO-TP'    'KCNJ12'             [17]    [ 21319230]
    'BRCA-BH-A0HU-TP'    'DHX37'              [12]    [125465270]
    'BRCA-BH-A0HU-TP'    'GPRIN2'             [10]    [ 46999863]
    'BRCA-BH-A0HU-TP'    'PLA2G4F'            [15]    [ 42439944]
    'BRCA-BH-A0W3-TP'    'UBAP2L'             [ 1]    [154233514]
    'BRCA-BH-A0W4-TP'    'PHLPP1'             [18]    [ 60645818]
    'BRCA-BH-A18L-TP'    'LOC100131360'       [ 3]    [195723586]
    'BRCA-BH-A18Q-TP'    'MLL3'               [ 7]    [151945140]
    'BRCA-BH-A18T-TP'    'PRSS50'             [ 3]    [ 46759228]
    'BRCA-BH-A18U-TP'    'MLL3'               [ 7]    [151932949]
    'BRCA-BH-A18U-TP'    'PHOSPHO1'           [17]    [ 47302390]
    'BRCA-BH-A1EV-TP'    'C15orf51'           [15]    [100339984]
    'BRCA-C8-A12K-TP'    'BTNL8'              [ 5]    [180335598]
    'BRCA-C8-A12N-TP'    'ENSG00000245549'    [ 1]    [ 16950449]
    'BRCA-C8-A12W-TP'    'CPNE7'              [16]    [ 89663025]
    'BRCA-C8-A12X-TP'    'CROCCL1'            [ 1]    [ 16946407]
    'BRCA-C8-A12X-TP'    'KRTAP10-7'          [21]    [ 46020656]
    'BRCA-C8-A12Z-TP'    'ENSG00000228637'    [10]    [ 42392701]
    'BRCA-C8-A135-TP'    'LOC100287382'       [ 9]    [    52584]
    'BRCA-C8-A1HG-TP'    'EMB'                [ 5]    [ 49736887]
    'BRCA-D8-A147-TP'    'FRG1'               [ 4]    [190878577]
    'BRCA-E2-A109-TP'    'OR8I2'              [11]    [ 55861593]
    'BRCA-E2-A14O-TP'    'DULLARD'            [17]    [  7154582]
    'BRCA-E2-A14Q-TP'    'CRIPAK'             [ 4]    [  1388441]
    'BRCA-E2-A14R-TP'    'MUC4'               [ 3]    [195508108]
    'BRCA-E2-A14R-TP'    'MUC4'               [ 3]    [195512343]
    'BRCA-E2-A14S-TP'    'C17orf76'           [17]    [ 16347325]
    'BRCA-E2-A14S-TP'    'MAP3K5'             [ 6]    [136977568]
    'BRCA-E2-A14S-TP'    'NOD2'               [16]    [ 50733859]
    'BRCA-E2-A14S-TP'    'TAS2R43'            [12]    [ 11244194]
    'BRCA-E2-A14Y-TP'    'ENSG00000228637'    [10]    [ 42394522]
    'BRCA-E2-A14Z-TP'    'GGT3P'              [22]    [ 18769145]
    'BRCA-E2-A152-TP'    'TPTE2'              [13]    [ 20006719]
    'BRCA-E2-A15D-TP'    'DULLARD'            [17]    [  7154582]
    'BRCA-E2-A15J-TP'    'ENSG00000188447'    [15]    [ 74356031]
    'BRCA-E2-A15K-TP'    'NOTCH4'             [ 6]    [ 32191659]
    'BRCA-E2-A15M-TP'    'ENSG00000247869'    [10]    [ 29751492]
    'BRCA-E2-A15R-TP'    'ACHE'               [ 7]    [100488658]
    'BRCA-E2-A1AZ-TP'    'GOLGA6L1'           [15]    [ 22743235]
    'BRCA-E2-A1B4-TP'    'BMP8B'              [ 1]    [ 40226145]
    'BRCA-E2-A1B5-TP'    'SSPO'               [ 7]    [149518533]

  Column 5

    'T'           
    'C'           
    '-'           
    'T'           
    'T'           
    'T'           
    'A'           
    'G'           
    'T'           
    'G'           
    'C'           
    'TAGT'        
    'C'           
    'T'           
    'G'           
    '-'           
    '-'           
    'CTG'         
    '-'           
    '-'           
    '-'           
    '-'           
    '-'           
    'T'           
    'CTG'         
    'G'           
    'T'           
    'T'           
    'A'           
    'C'           
    'G'           
    '-'           
    'G'           
    'T'           
    'T'           
    'G'           
    'G'           
    'A'           
    'T'           
    '-'           
    'C'           
    'G'           
    'G'           
    'G'           
    'G'           
    '-'           
    'G'           
    'T'           
    'GC'          
    'CTGGTGCGCGT' 
    'G'           
    'T'           
    'G'           
    'T'           
    'T'           
    'T'           
    'C'           
    '-'           
    'C'           
    'G'           
    'G'           
    'T'           
    '-'           
    'G'           
    'A'           
    'C'           
    '-'           
    'G'           
    '-'           
    'G'           
    'G'           
    'C'           
    '-'           
    'A'           
    'A'           
    'G'           
    'G'           
    'G'           
    'C'           
    '-'           
    'T'           
    'C'           
    'G'           
    'T'           
    'A'           
    'GAA'         
    'C'           
    '-'           
    'C'           
    '-'           
    '-'           
    'A'           
    'A'           
    'T'           
    'G'           
    'G'           
    'G'           
    'C'           
    'T'           
    'T'           
    'A'           
    'T'           
    'C'           
    'G'           
    '-'           
    'C'           
    'C'           
    '-'           
    'G'           
    'T'           
    'C'           
    'C'           
    '-'           
    'A'           
    'T'           
    'GAA'         
    '-'           
    'CGG'         
    'T'           
    'G'           
    'C'           
    'A'           
    'C'           
    'A'           
    'G'           
    'G'           
    'T'           
    'CGGCAGCAACCG'
    'G'           
    'GGGGTAAGCA'  
    'C'           
    'A'           
    '-'           
    'C'           
    'A'           
    'G'           
    'G'           
    'T'           
    'T'           
    'A'           
    'T'           
    'A'           
    'G'           
    'G'           
    '-'           
    'G'           
    'G'           
    'A'           
    'T'           
    'C'           
    '-'           
    'G'           
    'C'           
    'C'           
    'T'           
    'A'           
    'T'           
    'AGC'         
    'A'           
    '-'           
    'C'           
    'G'           
    'G'           
    'T'           
    'G'           
    '-'           
    'G'           
    'T'           
    'A'           
    'G'           
    'A'           
    'C'           
    'G'           
    'A'           
    'A'           
    'C'           
    'C'           
    'G'           
    'C'           
    'C'           
    'A'           
    'G'           
    'C'           
    'A'           
    '-'           
    '-'           
    'C'           
    'G'           
    'G'           
    '-'           

Removing the following non-coding mutations (based on "type" field):
          RNA: [1624]
    ----TOTAL: [1624]
Not enforcing any target list.
Collapsing adjacent mutations:
convert_chr: assuming human for chrX/chrY

       2 SNPs/Indels to one SNP: [91]
    2 redundant SNPs to one SNP: [174]
       4 SNPs/Indels to one SNP: [1]
    4 redundant SNPs to one SNP: [3]
                      ----TOTAL: [269]

Genes affected:
              ABCA1: [1]
             ABCB11: [1]
              ACAA1: [1]
                ACE: [1]
              ACRBP: [1]
              ACTN2: [1]
           ADAMTS18: [1]
               AFF2: [1]
             AGPAT5: [1]
            AGTPBP1: [1]
             AHCTF1: [1]
            ALDH8A1: [1]
                ALK: [1]
             AMICA1: [1]
               ANK1: [1]
            ANKRD12: [1]
             ANXA13: [1]
          ARHGAP11A: [1]
             ASPRV1: [1]
             ATAD2B: [1]
              ATG4A: [1]
               ATL3: [1]
             ATP10A: [1]
             BAT2L1: [1]
              BAZ1A: [1]
              BCAT1: [1]
            BCL2L11: [1]
               BCL9: [1]
                BSN: [1]
                BSX: [1]
           C11orf85: [1]
          C14orf145: [1]
           C19orf57: [1]
           C1orf103: [1]
          C21orf119: [1]
            C2orf86: [1]
           C6orf136: [1]
           C6orf142: [1]
               CA11: [1]
            CACNA1B: [1]
             CAMK2D: [1]
            CCDC155: [1]
             CCL4L2: [1]
              CCNB1: [1]
               CD74: [1]
             CEP250: [1]
               CHD6: [1]
             CHI3L1: [1]
             CLASP2: [1]
              CLIC5: [1]
              CNOT3: [1]
            CNTNAP2: [1]
            COL11A2: [1]
             COL3A1: [1]
              CRTAP: [1]
            CTNNAL1: [1]
             CYP2C8: [1]
                DCT: [1]
               DDX5: [1]
               DGKG: [1]
               DLX5: [1]
                DMD: [1]
              DNAH5: [1]
              DOCK7: [1]
              DOT1L: [1]
              DPEP1: [1]
              DSCAM: [1]
               DSG3: [1]
                DSP: [1]
             DYRK1A: [1]
                EED: [1]
              EEF2K: [1]
             EFEMP1: [1]
             EFTUD2: [1]
             EIF2C3: [1]
              EIF3H: [1]
               ELF1: [1]
    ENSG00000214210: [1]
             ERGIC1: [1]
               ETS1: [1]
               EXT1: [1]
            FAM169A: [1]
           FAM171A1: [1]
             FAM46A: [1]
               FAT4: [1]
              FBXL6: [1]
             FBXO44: [1]
              FGFR2: [1]
              FHDC1: [1]
             FLT3LG: [1]
                FN1: [1]
              FRAS1: [1]
              GATA3: [1]
             GCN1L1: [1]
             GOLGB1: [1]
              GPR20: [1]
              GPR61: [1]
              GPR98: [1]
             GRIN2A: [1]
             GRIN2B: [1]
              HERC5: [1]
           HIST1H3B: [1]
              HMHA1: [1]
              HTR1A: [1]
                HTT: [1]
              IFI35: [1]
             IFT140: [1]
               ILF2: [1]
              IPO13: [1]
              KCNH2: [1]
              KCNJ6: [1]
              KCNK2: [1]
              KDM6A: [1]
           KIAA0913: [1]
           KIAA1524: [1]
              KLRC1: [1]
              KLRC2: [1]
              KRT36: [1]
              KRT82: [1]
            L3MBTL3: [1]
              LAMA1: [1]
              LAMA5: [1]
             LARP4B: [1]
              LCE2A: [1]
             LHFPL4: [1]
               LIFR: [1]
              LMAN1: [1]
              LMOD3: [1]
       LOC100132364: [1]
       LOC100288413: [1]
       LOC100289661: [1]
          LOC440563: [1]
          LOC653720: [1]
          LOC732391: [1]
                LPA: [1]
              LPIN2: [1]
              LRRN3: [1]
              MAGI1: [1]
             MAP2K4: [1]
              MAPK8: [1]
                MAZ: [1]
               MBD1: [1]
              MED12: [1]
              MED23: [1]
              MEF2C: [1]
             MGAT5B: [1]
             MLLT10: [1]
             MTMR15: [1]
              MYCT1: [1]
              MYH10: [1]
               MYH4: [1]
               MYH9: [1]
           NAALADL2: [1]
               NAV3: [1]
                NF1: [1]
             NFATC4: [1]
               NGFR: [1]
              NPAS4: [1]
              NPY1R: [1]
              NR1H2: [1]
             OR51E2: [1]
             OR5AK2: [1]
              OXGR1: [1]
              PADI2: [1]
              PANX1: [1]
             PCDH10: [1]
             PCDH15: [1]
             PCDHA1: [1]
            PCDHB18: [1]
             PCDHB6: [1]
            PCDHGB2: [1]
               PDHB: [1]
               PFKM: [1]
              PHF12: [1]
              PHF16: [1]
             PIK3R3: [1]
             PIWIL1: [1]
             PIWIL2: [1]
             PKNOX2: [1]
             PLAGL2: [1]
              PLCL2: [1]
              POL3S: [1]
             POLR1C: [1]
               POP5: [1]
            PPP1R9A: [1]
             PTCHD1: [1]
              PTPRD: [1]
           RAB3GAP2: [1]
            RABGAP1: [1]
             RAD54B: [1]
             RASSF5: [1]
              RGPD4: [1]
               RGS4: [1]
               RPL5: [1]
              SAAL1: [1]
              SALL1: [1]
              SARM1: [1]
               SCAI: [1]
              SCN1A: [1]
            SHROOM2: [1]
            SLC10A3: [1]
            SLC16A1: [1]
           SLC25A16: [1]
           SLC25A25: [1]
            SLC34A2: [1]
           SLC39A14: [1]
            SMARCA4: [1]
               SPEN: [1]
              SRP72: [1]
               SRPR: [1]
               SSPO: [1]
               SSX3: [1]
              STAG2: [1]
              STRN4: [1]
              TAOK3: [1]
            TAS2R10: [1]
              TEX15: [1]
              TIMP3: [1]
              TINAG: [1]
            TMEM117: [1]
              TPST1: [1]
              TRAK1: [1]
              TRAT1: [1]
             TRERF1: [1]
             TRIP10: [1]
              TRMT5: [1]
             TSEN15: [1]
             TSGA10: [1]
                TUB: [1]
               UGT8: [1]
             UMODL1: [1]
              WDR13: [1]
               WNK3: [1]
            XPNPEP3: [1]
                ZAK: [1]
            ZKSCAN1: [1]
              ZNF10: [1]
             ZNF415: [1]
             ZNF492: [1]
             ZNF536: [1]
             ZNF592: [1]
             ZNF675: [1]
             ZNF687: [1]
             ZNF829: [1]
             ZSCAN2: [1]
            ALOX12B: [2]
             GOLGA4: [2]
             MAP3K1: [2]
                MGA: [2]
             PNPLA3: [2]
              WNT7A: [2]
               TP53: [3]
             PIK3CA: [9]
          ----TOTAL: [269]

Patients affected:
    BRCA-A2-A04P-TP: [1]
    BRCA-A2-A04R-TP: [1]
    BRCA-A2-A0EY-TP: [1]
    BRCA-A8-A06O-TP: [1]
    BRCA-A8-A06P-TP: [1]
    BRCA-A8-A06Q-TP: [1]
    BRCA-A8-A07W-TP: [1]
    BRCA-A8-A086-TP: [1]
    BRCA-A8-A08L-TP: [1]
    BRCA-AN-A0AR-TP: [1]
    BRCA-AN-A0XN-TP: [1]
    BRCA-AR-A1AH-TP: [1]
    BRCA-B6-A0I8-TP: [1]
    BRCA-B6-A0X1-TP: [1]
    BRCA-BH-A0B7-TP: [1]
    BRCA-BH-A0BV-TP: [1]
    BRCA-BH-A0DH-TP: [1]
    BRCA-BH-A0EE-TP: [1]
    BRCA-C8-A1HM-TP: [1]
    BRCA-C8-A1HN-TP: [1]
    BRCA-E2-A153-TP: [1]
    BRCA-E2-A15L-TP: [1]
    BRCA-E2-A1B5-TP: [1]
    BRCA-A7-A13F-TP: [2]
    BRCA-BH-A0BJ-TP: [2]
    BRCA-BH-A0BO-TP: [2]
    BRCA-BH-A0DE-TP: [2]
    BRCA-BH-A0DL-TP: [2]
    BRCA-BH-A0DQ-TP: [2]
    BRCA-BH-A0E1-TP: [2]
    BRCA-A7-A0D9-TP: [3]
    BRCA-A7-A0DB-TP: [3]
    BRCA-BH-A0B3-TP: [3]
    BRCA-BH-A0BQ-TP: [3]
    BRCA-BH-A0DP-TP: [3]
    BRCA-BH-A0H7-TP: [3]
    BRCA-E2-A158-TP: [3]
    BRCA-A7-A0CH-TP: [4]
    BRCA-BH-A0B8-TP: [4]
    BRCA-BH-A0BA-TP: [4]
    BRCA-BH-A0BM-TP: [4]
    BRCA-BH-A0C0-TP: [4]
    BRCA-BH-A0E0-TP: [4]
    BRCA-BH-A0BC-TP: [5]
    BRCA-BH-A0H9-TP: [5]
    BRCA-E2-A14Y-TP: [5]
    BRCA-BH-A0HK-TP: [6]
    BRCA-A7-A0CE-TP: [7]
    BRCA-BH-A0AY-TP: [7]
    BRCA-E2-A1BC-TP: [7]
    BRCA-BH-A0BL-TP: [8]
    BRCA-E2-A15M-TP: [8]
    BRCA-BH-A0DK-TP: [10]
    BRCA-BH-A0DZ-TP: [11]
    BRCA-BH-A0BW-TP: [15]
    BRCA-E2-A15A-TP: [25]
    BRCA-E2-A15E-TP: [28]
    BRCA-E2-A15K-TP: [40]
          ----TOTAL: [269]
convert_chr: assuming human for chrX/chrY
Collapsed 32127 muts to 31850 muts
Getting context: 31% 62% 94% 

Done.
Saved BRCA-TP.mutation_preprocessing_report.txt
Saved BRCA-TP.maf
Total of 507 patients had both MAF and WIG data.
Saved BRCA-TP.patients.txt
Saved BRCA-TP.coverage.prepare.txt
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigPreprocess.90.3705/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285789
mFile: fh_MutSigPreprocess
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigPreprocess.90.3705/fh_MutSigPreprocess /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigPreprocess.90.3705/ -i BRCA-TP -b hg19 -t /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_hg19.txt -c /xchip/cga1/annotation/db/tracks/hg19/c65e -bd /xchip/cga1/annotation/db/ucsc/hg19 -cat 4 -maf2 /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/BRCA-TP/2283692/maf2.input.tsv -maflabel1 Broad -maflabel2 WashU -maflabel3 Baylor -wig2 /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/BRCA-TP/2283692/wig2.input.tsv -p /xchip/cga1/reference/mutsig_params/MutSig2.0_cga.pancan.blacklist.v7.hg19.params.txt
