Job <141498> is submitted to queue <cga>.
calling:  bsub -r -R select[tmp>1000 && scratch>1] -q cga -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1 -E cd "/xchip/tcga" && cd "/xchip/cga" -e prepare.err -oo prepare.out -K -R rusage[mem=4] -P test python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Prepare.py /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/ 1 0.001 /xchip/cga/gdac-prod/tcga-gdac/jobResults/ParadigmPrepare/BRCA-TP/2283913/0.ParadigmPrepare.Finished/clusterFiles.tar /xchip/cga/gdac-prod/tcga-gdac/jobResults/ParadigmPrepare/BRCA-TP/2283913/0.ParadigmPrepare.Finished/config.txt /xchip/cga/gdac-prod/tcga-gdac/jobResults/ParadigmPrepare/BRCA-TP/2283913/0.ParadigmPrepare.Finished/configEM.txt /xchip/cga/gdac-prod/tcga-gdac/jobResults/ParadigmPrepare/BRCA-TP/2283913/0.ParadigmPrepare.Finished/jobs.sh /xchip/cga/gdac-prod/tcga-gdac/jobResults/ParadigmPrepare/BRCA-TP/2283913/0.ParadigmPrepare.Finished/templateEM.sh /xchip/cga/gdac-prod/tcga-gdac/jobResults/ParadigmPrepare/BRCA-TP/2283913/0.ParadigmPrepare.Finished/params0.txt
Started submitting scatter jobs at Thu Jan 10 15:05:34 2013
calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000001 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000001/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_36_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_36_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_49_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_49_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_61_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_61_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_41_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_41_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_7_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_7_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_7_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_7_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_79_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_79_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_79_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_79_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_124_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_124_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_14_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_14_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_14_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_14_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_100_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_100_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_100_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_100_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_93_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_93_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_93_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_93_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_86_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_86_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_86_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_86_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_46_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_46_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_123_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_123_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_80_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_80_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_80_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_80_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_15_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_15_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_39_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_39_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_89_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_89_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_127_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_127_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_127_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_127_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_13_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_13_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_75_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_75_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b0_164_learned_parameters.fa -s 0,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b1_164_learned_parameters.fa -s 1,164

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000002 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000002/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b2_164_learned_parameters.fa -s 2,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b3_164_learned_parameters.fa -s 3,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b4_164_learned_parameters.fa -s 4,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b5_164_learned_parameters.fa -s 5,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b6_164_learned_parameters.fa -s 6,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b7_164_learned_parameters.fa -s 7,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b8_164_learned_parameters.fa -s 8,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b9_164_learned_parameters.fa -s 9,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b10_164_learned_parameters.fa -s 10,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b11_164_learned_parameters.fa -s 11,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b12_164_learned_parameters.fa -s 12,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b13_164_learned_parameters.fa -s 13,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b14_164_learned_parameters.fa -s 14,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b15_164_learned_parameters.fa -s 15,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b16_164_learned_parameters.fa -s 16,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b17_164_learned_parameters.fa -s 17,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b18_164_learned_parameters.fa -s 18,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b19_164_learned_parameters.fa -s 19,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b20_164_learned_parameters.fa -s 20,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b21_164_learned_parameters.fa -s 21,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b22_164_learned_parameters.fa -s 22,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b23_164_learned_parameters.fa -s 23,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b24_164_learned_parameters.fa -s 24,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b25_164_learned_parameters.fa -s 25,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b26_164_learned_parameters.fa -s 26,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b27_164_learned_parameters.fa -s 27,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b28_164_learned_parameters.fa -s 28,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b29_164_learned_parameters.fa -s 29,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b30_164_learned_parameters.fa -s 30,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b31_164_learned_parameters.fa -s 31,164

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000003 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000003/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b32_164_learned_parameters.fa -s 32,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b33_164_learned_parameters.fa -s 33,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b34_164_learned_parameters.fa -s 34,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b35_164_learned_parameters.fa -s 35,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b36_164_learned_parameters.fa -s 36,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b37_164_learned_parameters.fa -s 37,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b38_164_learned_parameters.fa -s 38,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b39_164_learned_parameters.fa -s 39,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b40_164_learned_parameters.fa -s 40,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b41_164_learned_parameters.fa -s 41,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b42_164_learned_parameters.fa -s 42,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b43_164_learned_parameters.fa -s 43,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b44_164_learned_parameters.fa -s 44,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b45_164_learned_parameters.fa -s 45,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b46_164_learned_parameters.fa -s 46,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b47_164_learned_parameters.fa -s 47,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b48_164_learned_parameters.fa -s 48,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b49_164_learned_parameters.fa -s 49,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b50_164_learned_parameters.fa -s 50,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b51_164_learned_parameters.fa -s 51,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b52_164_learned_parameters.fa -s 52,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b53_164_learned_parameters.fa -s 53,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b54_164_learned_parameters.fa -s 54,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b55_164_learned_parameters.fa -s 55,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b56_164_learned_parameters.fa -s 56,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b57_164_learned_parameters.fa -s 57,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b58_164_learned_parameters.fa -s 58,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b59_164_learned_parameters.fa -s 59,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b60_164_learned_parameters.fa -s 60,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b61_164_learned_parameters.fa -s 61,164

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000004 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000004/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b62_164_learned_parameters.fa -s 62,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b63_164_learned_parameters.fa -s 63,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b64_164_learned_parameters.fa -s 64,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b65_164_learned_parameters.fa -s 65,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b66_164_learned_parameters.fa -s 66,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b67_164_learned_parameters.fa -s 67,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b68_164_learned_parameters.fa -s 68,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b69_164_learned_parameters.fa -s 69,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b70_164_learned_parameters.fa -s 70,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b71_164_learned_parameters.fa -s 71,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b72_164_learned_parameters.fa -s 72,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b73_164_learned_parameters.fa -s 73,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b74_164_learned_parameters.fa -s 74,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b75_164_learned_parameters.fa -s 75,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b76_164_learned_parameters.fa -s 76,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b77_164_learned_parameters.fa -s 77,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b78_164_learned_parameters.fa -s 78,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b79_164_learned_parameters.fa -s 79,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b80_164_learned_parameters.fa -s 80,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b81_164_learned_parameters.fa -s 81,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b82_164_learned_parameters.fa -s 82,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b83_164_learned_parameters.fa -s 83,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b84_164_learned_parameters.fa -s 84,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b85_164_learned_parameters.fa -s 85,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b86_164_learned_parameters.fa -s 86,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b87_164_learned_parameters.fa -s 87,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b88_164_learned_parameters.fa -s 88,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b89_164_learned_parameters.fa -s 89,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b90_164_learned_parameters.fa -s 90,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b91_164_learned_parameters.fa -s 91,164

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000005 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000005/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b92_164_learned_parameters.fa -s 92,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b93_164_learned_parameters.fa -s 93,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b94_164_learned_parameters.fa -s 94,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b95_164_learned_parameters.fa -s 95,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b96_164_learned_parameters.fa -s 96,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b97_164_learned_parameters.fa -s 97,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b98_164_learned_parameters.fa -s 98,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b99_164_learned_parameters.fa -s 99,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b100_164_learned_parameters.fa -s 100,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b101_164_learned_parameters.fa -s 101,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b102_164_learned_parameters.fa -s 102,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b103_164_learned_parameters.fa -s 103,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b104_164_learned_parameters.fa -s 104,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b105_164_learned_parameters.fa -s 105,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b106_164_learned_parameters.fa -s 106,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b107_164_learned_parameters.fa -s 107,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b108_164_learned_parameters.fa -s 108,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b109_164_learned_parameters.fa -s 109,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b110_164_learned_parameters.fa -s 110,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b111_164_learned_parameters.fa -s 111,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b112_164_learned_parameters.fa -s 112,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b113_164_learned_parameters.fa -s 113,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b114_164_learned_parameters.fa -s 114,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b115_164_learned_parameters.fa -s 115,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b116_164_learned_parameters.fa -s 116,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b117_164_learned_parameters.fa -s 117,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b118_164_learned_parameters.fa -s 118,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b119_164_learned_parameters.fa -s 119,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b120_164_learned_parameters.fa -s 120,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b121_164_learned_parameters.fa -s 121,164

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000006 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000006/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b122_164_learned_parameters.fa -s 122,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b123_164_learned_parameters.fa -s 123,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b124_164_learned_parameters.fa -s 124,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b125_164_learned_parameters.fa -s 125,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b126_164_learned_parameters.fa -s 126,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b127_164_learned_parameters.fa -s 127,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b128_164_learned_parameters.fa -s 128,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b129_164_learned_parameters.fa -s 129,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b130_164_learned_parameters.fa -s 130,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b131_164_learned_parameters.fa -s 131,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b132_164_learned_parameters.fa -s 132,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b133_164_learned_parameters.fa -s 133,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b134_164_learned_parameters.fa -s 134,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b135_164_learned_parameters.fa -s 135,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b136_164_learned_parameters.fa -s 136,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b137_164_learned_parameters.fa -s 137,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b138_164_learned_parameters.fa -s 138,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b139_164_learned_parameters.fa -s 139,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b140_164_learned_parameters.fa -s 140,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b141_164_learned_parameters.fa -s 141,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b142_164_learned_parameters.fa -s 142,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b143_164_learned_parameters.fa -s 143,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b144_164_learned_parameters.fa -s 144,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b145_164_learned_parameters.fa -s 145,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b146_164_learned_parameters.fa -s 146,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b147_164_learned_parameters.fa -s 147,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b148_164_learned_parameters.fa -s 148,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b149_164_learned_parameters.fa -s 149,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b150_164_learned_parameters.fa -s 150,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b151_164_learned_parameters.fa -s 151,164

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000007 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000007/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b152_164_learned_parameters.fa -s 152,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b153_164_learned_parameters.fa -s 153,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b154_164_learned_parameters.fa -s 154,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b155_164_learned_parameters.fa -s 155,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b156_164_learned_parameters.fa -s 156,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b157_164_learned_parameters.fa -s 157,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b158_164_learned_parameters.fa -s 158,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b159_164_learned_parameters.fa -s 159,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b160_164_learned_parameters.fa -s 160,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b161_164_learned_parameters.fa -s 161,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b162_164_learned_parameters.fa -s 162,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b163_164_learned_parameters.fa -s 163,164 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_82_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_82_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_119_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_119_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_119_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_119_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b0_34_learned_parameters.fa -s 0,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b1_34_learned_parameters.fa -s 1,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b2_34_learned_parameters.fa -s 2,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b3_34_learned_parameters.fa -s 3,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b4_34_learned_parameters.fa -s 4,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b5_34_learned_parameters.fa -s 5,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b6_34_learned_parameters.fa -s 6,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b7_34_learned_parameters.fa -s 7,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b8_34_learned_parameters.fa -s 8,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b9_34_learned_parameters.fa -s 9,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b10_34_learned_parameters.fa -s 10,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b11_34_learned_parameters.fa -s 11,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b12_34_learned_parameters.fa -s 12,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b13_34_learned_parameters.fa -s 13,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b14_34_learned_parameters.fa -s 14,34

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000008 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000008/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b15_34_learned_parameters.fa -s 15,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b16_34_learned_parameters.fa -s 16,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b17_34_learned_parameters.fa -s 17,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b18_34_learned_parameters.fa -s 18,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b19_34_learned_parameters.fa -s 19,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b20_34_learned_parameters.fa -s 20,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b21_34_learned_parameters.fa -s 21,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b22_34_learned_parameters.fa -s 22,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b23_34_learned_parameters.fa -s 23,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b24_34_learned_parameters.fa -s 24,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b25_34_learned_parameters.fa -s 25,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b26_34_learned_parameters.fa -s 26,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b27_34_learned_parameters.fa -s 27,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b28_34_learned_parameters.fa -s 28,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b29_34_learned_parameters.fa -s 29,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b30_34_learned_parameters.fa -s 30,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b31_34_learned_parameters.fa -s 31,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b32_34_learned_parameters.fa -s 32,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b33_34_learned_parameters.fa -s 33,34 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_52_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_52_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_52_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_52_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_65_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_65_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_130_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_130_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_85_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_85_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_85_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_85_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_51_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_51_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_51_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_51_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_43_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_43_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_43_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_43_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_110_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_110_b0_2_learned_parameters.fa -s 0,2

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000009 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000009/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_110_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_110_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_50_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_50_b0_5_learned_parameters.fa -s 0,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_50_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_50_b1_5_learned_parameters.fa -s 1,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_50_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_50_b2_5_learned_parameters.fa -s 2,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_50_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_50_b3_5_learned_parameters.fa -s 3,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_50_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_50_b4_5_learned_parameters.fa -s 4,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_106_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_106_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_106_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_106_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_54_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_54_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_31_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_31_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_74_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_74_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_74_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_74_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_72_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_72_b0_5_learned_parameters.fa -s 0,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_72_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_72_b1_5_learned_parameters.fa -s 1,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_72_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_72_b2_5_learned_parameters.fa -s 2,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_72_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_72_b3_5_learned_parameters.fa -s 3,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_72_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_72_b4_5_learned_parameters.fa -s 4,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_18_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_18_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_37_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_37_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_33_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_33_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_122_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_122_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_122_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_122_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_26_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_26_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_64_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_64_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_66_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_66_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_66_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_66_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_47_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_47_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_25_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_25_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_73_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_73_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_67_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_67_learned_parameters.fa

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000010 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000010/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_76_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_76_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_11_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_11_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_71_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_71_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b0_12_learned_parameters.fa -s 0,12 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b1_12_learned_parameters.fa -s 1,12 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b2_12_learned_parameters.fa -s 2,12 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b3_12_learned_parameters.fa -s 3,12 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b4_12_learned_parameters.fa -s 4,12 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b5_12_learned_parameters.fa -s 5,12 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b6_12_learned_parameters.fa -s 6,12 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b7_12_learned_parameters.fa -s 7,12 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b8_12_learned_parameters.fa -s 8,12 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b9_12_learned_parameters.fa -s 9,12 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b10_12_learned_parameters.fa -s 10,12 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b11_12_learned_parameters.fa -s 11,12 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_114_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_114_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_114_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_114_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_53_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_53_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_38_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_38_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b0_176_learned_parameters.fa -s 0,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b1_176_learned_parameters.fa -s 1,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b2_176_learned_parameters.fa -s 2,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b3_176_learned_parameters.fa -s 3,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b4_176_learned_parameters.fa -s 4,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b5_176_learned_parameters.fa -s 5,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b6_176_learned_parameters.fa -s 6,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b7_176_learned_parameters.fa -s 7,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b8_176_learned_parameters.fa -s 8,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b9_176_learned_parameters.fa -s 9,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b10_176_learned_parameters.fa -s 10,176

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000011 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000011/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b11_176_learned_parameters.fa -s 11,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b12_176_learned_parameters.fa -s 12,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b13_176_learned_parameters.fa -s 13,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b14_176_learned_parameters.fa -s 14,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b15_176_learned_parameters.fa -s 15,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b16_176_learned_parameters.fa -s 16,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b17_176_learned_parameters.fa -s 17,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b18_176_learned_parameters.fa -s 18,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b19_176_learned_parameters.fa -s 19,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b20_176_learned_parameters.fa -s 20,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b21_176_learned_parameters.fa -s 21,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b22_176_learned_parameters.fa -s 22,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b23_176_learned_parameters.fa -s 23,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b24_176_learned_parameters.fa -s 24,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b25_176_learned_parameters.fa -s 25,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b26_176_learned_parameters.fa -s 26,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b27_176_learned_parameters.fa -s 27,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b28_176_learned_parameters.fa -s 28,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b29_176_learned_parameters.fa -s 29,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b30_176_learned_parameters.fa -s 30,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b31_176_learned_parameters.fa -s 31,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b32_176_learned_parameters.fa -s 32,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b33_176_learned_parameters.fa -s 33,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b34_176_learned_parameters.fa -s 34,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b35_176_learned_parameters.fa -s 35,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b36_176_learned_parameters.fa -s 36,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b37_176_learned_parameters.fa -s 37,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b38_176_learned_parameters.fa -s 38,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b39_176_learned_parameters.fa -s 39,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b40_176_learned_parameters.fa -s 40,176

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000012 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000012/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b41_176_learned_parameters.fa -s 41,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b42_176_learned_parameters.fa -s 42,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b43_176_learned_parameters.fa -s 43,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b44_176_learned_parameters.fa -s 44,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b45_176_learned_parameters.fa -s 45,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b46_176_learned_parameters.fa -s 46,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b47_176_learned_parameters.fa -s 47,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b48_176_learned_parameters.fa -s 48,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b49_176_learned_parameters.fa -s 49,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b50_176_learned_parameters.fa -s 50,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b51_176_learned_parameters.fa -s 51,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b52_176_learned_parameters.fa -s 52,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b53_176_learned_parameters.fa -s 53,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b54_176_learned_parameters.fa -s 54,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b55_176_learned_parameters.fa -s 55,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b56_176_learned_parameters.fa -s 56,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b57_176_learned_parameters.fa -s 57,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b58_176_learned_parameters.fa -s 58,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b59_176_learned_parameters.fa -s 59,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b60_176_learned_parameters.fa -s 60,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b61_176_learned_parameters.fa -s 61,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b62_176_learned_parameters.fa -s 62,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b63_176_learned_parameters.fa -s 63,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b64_176_learned_parameters.fa -s 64,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b65_176_learned_parameters.fa -s 65,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b66_176_learned_parameters.fa -s 66,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b67_176_learned_parameters.fa -s 67,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b68_176_learned_parameters.fa -s 68,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b69_176_learned_parameters.fa -s 69,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b70_176_learned_parameters.fa -s 70,176

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000013 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000013/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b71_176_learned_parameters.fa -s 71,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b72_176_learned_parameters.fa -s 72,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b73_176_learned_parameters.fa -s 73,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b74_176_learned_parameters.fa -s 74,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b75_176_learned_parameters.fa -s 75,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b76_176_learned_parameters.fa -s 76,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b77_176_learned_parameters.fa -s 77,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b78_176_learned_parameters.fa -s 78,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b79_176_learned_parameters.fa -s 79,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b80_176_learned_parameters.fa -s 80,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b81_176_learned_parameters.fa -s 81,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b82_176_learned_parameters.fa -s 82,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b83_176_learned_parameters.fa -s 83,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b84_176_learned_parameters.fa -s 84,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b85_176_learned_parameters.fa -s 85,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b86_176_learned_parameters.fa -s 86,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b87_176_learned_parameters.fa -s 87,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b88_176_learned_parameters.fa -s 88,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b89_176_learned_parameters.fa -s 89,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b90_176_learned_parameters.fa -s 90,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b91_176_learned_parameters.fa -s 91,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b92_176_learned_parameters.fa -s 92,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b93_176_learned_parameters.fa -s 93,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b94_176_learned_parameters.fa -s 94,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b95_176_learned_parameters.fa -s 95,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b96_176_learned_parameters.fa -s 96,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b97_176_learned_parameters.fa -s 97,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b98_176_learned_parameters.fa -s 98,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b99_176_learned_parameters.fa -s 99,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b100_176_learned_parameters.fa -s 100,176

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000014 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000014/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b101_176_learned_parameters.fa -s 101,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b102_176_learned_parameters.fa -s 102,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b103_176_learned_parameters.fa -s 103,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b104_176_learned_parameters.fa -s 104,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b105_176_learned_parameters.fa -s 105,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b106_176_learned_parameters.fa -s 106,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b107_176_learned_parameters.fa -s 107,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b108_176_learned_parameters.fa -s 108,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b109_176_learned_parameters.fa -s 109,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b110_176_learned_parameters.fa -s 110,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b111_176_learned_parameters.fa -s 111,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b112_176_learned_parameters.fa -s 112,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b113_176_learned_parameters.fa -s 113,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b114_176_learned_parameters.fa -s 114,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b115_176_learned_parameters.fa -s 115,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b116_176_learned_parameters.fa -s 116,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b117_176_learned_parameters.fa -s 117,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b118_176_learned_parameters.fa -s 118,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b119_176_learned_parameters.fa -s 119,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b120_176_learned_parameters.fa -s 120,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b121_176_learned_parameters.fa -s 121,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b122_176_learned_parameters.fa -s 122,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b123_176_learned_parameters.fa -s 123,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b124_176_learned_parameters.fa -s 124,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b125_176_learned_parameters.fa -s 125,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b126_176_learned_parameters.fa -s 126,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b127_176_learned_parameters.fa -s 127,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b128_176_learned_parameters.fa -s 128,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b129_176_learned_parameters.fa -s 129,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b130_176_learned_parameters.fa -s 130,176

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000015 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000015/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b131_176_learned_parameters.fa -s 131,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b132_176_learned_parameters.fa -s 132,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b133_176_learned_parameters.fa -s 133,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b134_176_learned_parameters.fa -s 134,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b135_176_learned_parameters.fa -s 135,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b136_176_learned_parameters.fa -s 136,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b137_176_learned_parameters.fa -s 137,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b138_176_learned_parameters.fa -s 138,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b139_176_learned_parameters.fa -s 139,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b140_176_learned_parameters.fa -s 140,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b141_176_learned_parameters.fa -s 141,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b142_176_learned_parameters.fa -s 142,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b143_176_learned_parameters.fa -s 143,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b144_176_learned_parameters.fa -s 144,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b145_176_learned_parameters.fa -s 145,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b146_176_learned_parameters.fa -s 146,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b147_176_learned_parameters.fa -s 147,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b148_176_learned_parameters.fa -s 148,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b149_176_learned_parameters.fa -s 149,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b150_176_learned_parameters.fa -s 150,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b151_176_learned_parameters.fa -s 151,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b152_176_learned_parameters.fa -s 152,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b153_176_learned_parameters.fa -s 153,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b154_176_learned_parameters.fa -s 154,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b155_176_learned_parameters.fa -s 155,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b156_176_learned_parameters.fa -s 156,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b157_176_learned_parameters.fa -s 157,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b158_176_learned_parameters.fa -s 158,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b159_176_learned_parameters.fa -s 159,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b160_176_learned_parameters.fa -s 160,176

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000016 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000016/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b161_176_learned_parameters.fa -s 161,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b162_176_learned_parameters.fa -s 162,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b163_176_learned_parameters.fa -s 163,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b164_176_learned_parameters.fa -s 164,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b165_176_learned_parameters.fa -s 165,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b166_176_learned_parameters.fa -s 166,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b167_176_learned_parameters.fa -s 167,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b168_176_learned_parameters.fa -s 168,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b169_176_learned_parameters.fa -s 169,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b170_176_learned_parameters.fa -s 170,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b171_176_learned_parameters.fa -s 171,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b172_176_learned_parameters.fa -s 172,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b173_176_learned_parameters.fa -s 173,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b174_176_learned_parameters.fa -s 174,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b175_176_learned_parameters.fa -s 175,176 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_134_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_134_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_94_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_94_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_94_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_94_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_44_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_44_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_44_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_44_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_111_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_111_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_115_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_115_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_12_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_12_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b0_415_learned_parameters.fa -s 0,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b1_415_learned_parameters.fa -s 1,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b2_415_learned_parameters.fa -s 2,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b3_415_learned_parameters.fa -s 3,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b4_415_learned_parameters.fa -s 4,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b5_415_learned_parameters.fa -s 5,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b6_415_learned_parameters.fa -s 6,415

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000017 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000017/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b7_415_learned_parameters.fa -s 7,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b8_415_learned_parameters.fa -s 8,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b9_415_learned_parameters.fa -s 9,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b10_415_learned_parameters.fa -s 10,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b11_415_learned_parameters.fa -s 11,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b12_415_learned_parameters.fa -s 12,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b13_415_learned_parameters.fa -s 13,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b14_415_learned_parameters.fa -s 14,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b15_415_learned_parameters.fa -s 15,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b16_415_learned_parameters.fa -s 16,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b17_415_learned_parameters.fa -s 17,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b18_415_learned_parameters.fa -s 18,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b19_415_learned_parameters.fa -s 19,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b20_415_learned_parameters.fa -s 20,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b21_415_learned_parameters.fa -s 21,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b22_415_learned_parameters.fa -s 22,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b23_415_learned_parameters.fa -s 23,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b24_415_learned_parameters.fa -s 24,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b25_415_learned_parameters.fa -s 25,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b26_415_learned_parameters.fa -s 26,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b27_415_learned_parameters.fa -s 27,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b28_415_learned_parameters.fa -s 28,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b29_415_learned_parameters.fa -s 29,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b30_415_learned_parameters.fa -s 30,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b31_415_learned_parameters.fa -s 31,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b32_415_learned_parameters.fa -s 32,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b33_415_learned_parameters.fa -s 33,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b34_415_learned_parameters.fa -s 34,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b35_415_learned_parameters.fa -s 35,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b36_415_learned_parameters.fa -s 36,415

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000018 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000018/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b37_415_learned_parameters.fa -s 37,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b38_415_learned_parameters.fa -s 38,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b39_415_learned_parameters.fa -s 39,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b40_415_learned_parameters.fa -s 40,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b41_415_learned_parameters.fa -s 41,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b42_415_learned_parameters.fa -s 42,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b43_415_learned_parameters.fa -s 43,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b44_415_learned_parameters.fa -s 44,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b45_415_learned_parameters.fa -s 45,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b46_415_learned_parameters.fa -s 46,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b47_415_learned_parameters.fa -s 47,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b48_415_learned_parameters.fa -s 48,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b49_415_learned_parameters.fa -s 49,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b50_415_learned_parameters.fa -s 50,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b51_415_learned_parameters.fa -s 51,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b52_415_learned_parameters.fa -s 52,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b53_415_learned_parameters.fa -s 53,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b54_415_learned_parameters.fa -s 54,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b55_415_learned_parameters.fa -s 55,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b56_415_learned_parameters.fa -s 56,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b57_415_learned_parameters.fa -s 57,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b58_415_learned_parameters.fa -s 58,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b59_415_learned_parameters.fa -s 59,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b60_415_learned_parameters.fa -s 60,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b61_415_learned_parameters.fa -s 61,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b62_415_learned_parameters.fa -s 62,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b63_415_learned_parameters.fa -s 63,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b64_415_learned_parameters.fa -s 64,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b65_415_learned_parameters.fa -s 65,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b66_415_learned_parameters.fa -s 66,415

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000019 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000019/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b67_415_learned_parameters.fa -s 67,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b68_415_learned_parameters.fa -s 68,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b69_415_learned_parameters.fa -s 69,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b70_415_learned_parameters.fa -s 70,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b71_415_learned_parameters.fa -s 71,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b72_415_learned_parameters.fa -s 72,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b73_415_learned_parameters.fa -s 73,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b74_415_learned_parameters.fa -s 74,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b75_415_learned_parameters.fa -s 75,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b76_415_learned_parameters.fa -s 76,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b77_415_learned_parameters.fa -s 77,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b78_415_learned_parameters.fa -s 78,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b79_415_learned_parameters.fa -s 79,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b80_415_learned_parameters.fa -s 80,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b81_415_learned_parameters.fa -s 81,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b82_415_learned_parameters.fa -s 82,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b83_415_learned_parameters.fa -s 83,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b84_415_learned_parameters.fa -s 84,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b85_415_learned_parameters.fa -s 85,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b86_415_learned_parameters.fa -s 86,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b87_415_learned_parameters.fa -s 87,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b88_415_learned_parameters.fa -s 88,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b89_415_learned_parameters.fa -s 89,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b90_415_learned_parameters.fa -s 90,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b91_415_learned_parameters.fa -s 91,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b92_415_learned_parameters.fa -s 92,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b93_415_learned_parameters.fa -s 93,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b94_415_learned_parameters.fa -s 94,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b95_415_learned_parameters.fa -s 95,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b96_415_learned_parameters.fa -s 96,415

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000020 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000020/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b97_415_learned_parameters.fa -s 97,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b98_415_learned_parameters.fa -s 98,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b99_415_learned_parameters.fa -s 99,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b100_415_learned_parameters.fa -s 100,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b101_415_learned_parameters.fa -s 101,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b102_415_learned_parameters.fa -s 102,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b103_415_learned_parameters.fa -s 103,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b104_415_learned_parameters.fa -s 104,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b105_415_learned_parameters.fa -s 105,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b106_415_learned_parameters.fa -s 106,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b107_415_learned_parameters.fa -s 107,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b108_415_learned_parameters.fa -s 108,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b109_415_learned_parameters.fa -s 109,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b110_415_learned_parameters.fa -s 110,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b111_415_learned_parameters.fa -s 111,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b112_415_learned_parameters.fa -s 112,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b113_415_learned_parameters.fa -s 113,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b114_415_learned_parameters.fa -s 114,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b115_415_learned_parameters.fa -s 115,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b116_415_learned_parameters.fa -s 116,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b117_415_learned_parameters.fa -s 117,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b118_415_learned_parameters.fa -s 118,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b119_415_learned_parameters.fa -s 119,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b120_415_learned_parameters.fa -s 120,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b121_415_learned_parameters.fa -s 121,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b122_415_learned_parameters.fa -s 122,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b123_415_learned_parameters.fa -s 123,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b124_415_learned_parameters.fa -s 124,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b125_415_learned_parameters.fa -s 125,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b126_415_learned_parameters.fa -s 126,415

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000021 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000021/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b127_415_learned_parameters.fa -s 127,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b128_415_learned_parameters.fa -s 128,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b129_415_learned_parameters.fa -s 129,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b130_415_learned_parameters.fa -s 130,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b131_415_learned_parameters.fa -s 131,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b132_415_learned_parameters.fa -s 132,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b133_415_learned_parameters.fa -s 133,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b134_415_learned_parameters.fa -s 134,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b135_415_learned_parameters.fa -s 135,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b136_415_learned_parameters.fa -s 136,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b137_415_learned_parameters.fa -s 137,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b138_415_learned_parameters.fa -s 138,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b139_415_learned_parameters.fa -s 139,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b140_415_learned_parameters.fa -s 140,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b141_415_learned_parameters.fa -s 141,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b142_415_learned_parameters.fa -s 142,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b143_415_learned_parameters.fa -s 143,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b144_415_learned_parameters.fa -s 144,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b145_415_learned_parameters.fa -s 145,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b146_415_learned_parameters.fa -s 146,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b147_415_learned_parameters.fa -s 147,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b148_415_learned_parameters.fa -s 148,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b149_415_learned_parameters.fa -s 149,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b150_415_learned_parameters.fa -s 150,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b151_415_learned_parameters.fa -s 151,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b152_415_learned_parameters.fa -s 152,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b153_415_learned_parameters.fa -s 153,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b154_415_learned_parameters.fa -s 154,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b155_415_learned_parameters.fa -s 155,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b156_415_learned_parameters.fa -s 156,415

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000022 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000022/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b157_415_learned_parameters.fa -s 157,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b158_415_learned_parameters.fa -s 158,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b159_415_learned_parameters.fa -s 159,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b160_415_learned_parameters.fa -s 160,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b161_415_learned_parameters.fa -s 161,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b162_415_learned_parameters.fa -s 162,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b163_415_learned_parameters.fa -s 163,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b164_415_learned_parameters.fa -s 164,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b165_415_learned_parameters.fa -s 165,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b166_415_learned_parameters.fa -s 166,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b167_415_learned_parameters.fa -s 167,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b168_415_learned_parameters.fa -s 168,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b169_415_learned_parameters.fa -s 169,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b170_415_learned_parameters.fa -s 170,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b171_415_learned_parameters.fa -s 171,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b172_415_learned_parameters.fa -s 172,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b173_415_learned_parameters.fa -s 173,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b174_415_learned_parameters.fa -s 174,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b175_415_learned_parameters.fa -s 175,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b176_415_learned_parameters.fa -s 176,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b177_415_learned_parameters.fa -s 177,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b178_415_learned_parameters.fa -s 178,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b179_415_learned_parameters.fa -s 179,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b180_415_learned_parameters.fa -s 180,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b181_415_learned_parameters.fa -s 181,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b182_415_learned_parameters.fa -s 182,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b183_415_learned_parameters.fa -s 183,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b184_415_learned_parameters.fa -s 184,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b185_415_learned_parameters.fa -s 185,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b186_415_learned_parameters.fa -s 186,415

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000023 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000023/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b187_415_learned_parameters.fa -s 187,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b188_415_learned_parameters.fa -s 188,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b189_415_learned_parameters.fa -s 189,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b190_415_learned_parameters.fa -s 190,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b191_415_learned_parameters.fa -s 191,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b192_415_learned_parameters.fa -s 192,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b193_415_learned_parameters.fa -s 193,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b194_415_learned_parameters.fa -s 194,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b195_415_learned_parameters.fa -s 195,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b196_415_learned_parameters.fa -s 196,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b197_415_learned_parameters.fa -s 197,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b198_415_learned_parameters.fa -s 198,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b199_415_learned_parameters.fa -s 199,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b200_415_learned_parameters.fa -s 200,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b201_415_learned_parameters.fa -s 201,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b202_415_learned_parameters.fa -s 202,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b203_415_learned_parameters.fa -s 203,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b204_415_learned_parameters.fa -s 204,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b205_415_learned_parameters.fa -s 205,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b206_415_learned_parameters.fa -s 206,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b207_415_learned_parameters.fa -s 207,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b208_415_learned_parameters.fa -s 208,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b209_415_learned_parameters.fa -s 209,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b210_415_learned_parameters.fa -s 210,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b211_415_learned_parameters.fa -s 211,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b212_415_learned_parameters.fa -s 212,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b213_415_learned_parameters.fa -s 213,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b214_415_learned_parameters.fa -s 214,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b215_415_learned_parameters.fa -s 215,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b216_415_learned_parameters.fa -s 216,415

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000024 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000024/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b217_415_learned_parameters.fa -s 217,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b218_415_learned_parameters.fa -s 218,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b219_415_learned_parameters.fa -s 219,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b220_415_learned_parameters.fa -s 220,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b221_415_learned_parameters.fa -s 221,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b222_415_learned_parameters.fa -s 222,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b223_415_learned_parameters.fa -s 223,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b224_415_learned_parameters.fa -s 224,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b225_415_learned_parameters.fa -s 225,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b226_415_learned_parameters.fa -s 226,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b227_415_learned_parameters.fa -s 227,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b228_415_learned_parameters.fa -s 228,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b229_415_learned_parameters.fa -s 229,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b230_415_learned_parameters.fa -s 230,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b231_415_learned_parameters.fa -s 231,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b232_415_learned_parameters.fa -s 232,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b233_415_learned_parameters.fa -s 233,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b234_415_learned_parameters.fa -s 234,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b235_415_learned_parameters.fa -s 235,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b236_415_learned_parameters.fa -s 236,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b237_415_learned_parameters.fa -s 237,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b238_415_learned_parameters.fa -s 238,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b239_415_learned_parameters.fa -s 239,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b240_415_learned_parameters.fa -s 240,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b241_415_learned_parameters.fa -s 241,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b242_415_learned_parameters.fa -s 242,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b243_415_learned_parameters.fa -s 243,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b244_415_learned_parameters.fa -s 244,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b245_415_learned_parameters.fa -s 245,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b246_415_learned_parameters.fa -s 246,415

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000025 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000025/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b247_415_learned_parameters.fa -s 247,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b248_415_learned_parameters.fa -s 248,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b249_415_learned_parameters.fa -s 249,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b250_415_learned_parameters.fa -s 250,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b251_415_learned_parameters.fa -s 251,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b252_415_learned_parameters.fa -s 252,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b253_415_learned_parameters.fa -s 253,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b254_415_learned_parameters.fa -s 254,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b255_415_learned_parameters.fa -s 255,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b256_415_learned_parameters.fa -s 256,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b257_415_learned_parameters.fa -s 257,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b258_415_learned_parameters.fa -s 258,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b259_415_learned_parameters.fa -s 259,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b260_415_learned_parameters.fa -s 260,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b261_415_learned_parameters.fa -s 261,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b262_415_learned_parameters.fa -s 262,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b263_415_learned_parameters.fa -s 263,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b264_415_learned_parameters.fa -s 264,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b265_415_learned_parameters.fa -s 265,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b266_415_learned_parameters.fa -s 266,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b267_415_learned_parameters.fa -s 267,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b268_415_learned_parameters.fa -s 268,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b269_415_learned_parameters.fa -s 269,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b270_415_learned_parameters.fa -s 270,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b271_415_learned_parameters.fa -s 271,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b272_415_learned_parameters.fa -s 272,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b273_415_learned_parameters.fa -s 273,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b274_415_learned_parameters.fa -s 274,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b275_415_learned_parameters.fa -s 275,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b276_415_learned_parameters.fa -s 276,415

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000026 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000026/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b277_415_learned_parameters.fa -s 277,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b278_415_learned_parameters.fa -s 278,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b279_415_learned_parameters.fa -s 279,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b280_415_learned_parameters.fa -s 280,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b281_415_learned_parameters.fa -s 281,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b282_415_learned_parameters.fa -s 282,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b283_415_learned_parameters.fa -s 283,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b284_415_learned_parameters.fa -s 284,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b285_415_learned_parameters.fa -s 285,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b286_415_learned_parameters.fa -s 286,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b287_415_learned_parameters.fa -s 287,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b288_415_learned_parameters.fa -s 288,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b289_415_learned_parameters.fa -s 289,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b290_415_learned_parameters.fa -s 290,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b291_415_learned_parameters.fa -s 291,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b292_415_learned_parameters.fa -s 292,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b293_415_learned_parameters.fa -s 293,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b294_415_learned_parameters.fa -s 294,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b295_415_learned_parameters.fa -s 295,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b296_415_learned_parameters.fa -s 296,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b297_415_learned_parameters.fa -s 297,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b298_415_learned_parameters.fa -s 298,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b299_415_learned_parameters.fa -s 299,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b300_415_learned_parameters.fa -s 300,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b301_415_learned_parameters.fa -s 301,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b302_415_learned_parameters.fa -s 302,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b303_415_learned_parameters.fa -s 303,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b304_415_learned_parameters.fa -s 304,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b305_415_learned_parameters.fa -s 305,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b306_415_learned_parameters.fa -s 306,415

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000027 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000027/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b307_415_learned_parameters.fa -s 307,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b308_415_learned_parameters.fa -s 308,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b309_415_learned_parameters.fa -s 309,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b310_415_learned_parameters.fa -s 310,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b311_415_learned_parameters.fa -s 311,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b312_415_learned_parameters.fa -s 312,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b313_415_learned_parameters.fa -s 313,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b314_415_learned_parameters.fa -s 314,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b315_415_learned_parameters.fa -s 315,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b316_415_learned_parameters.fa -s 316,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b317_415_learned_parameters.fa -s 317,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b318_415_learned_parameters.fa -s 318,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b319_415_learned_parameters.fa -s 319,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b320_415_learned_parameters.fa -s 320,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b321_415_learned_parameters.fa -s 321,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b322_415_learned_parameters.fa -s 322,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b323_415_learned_parameters.fa -s 323,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b324_415_learned_parameters.fa -s 324,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b325_415_learned_parameters.fa -s 325,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b326_415_learned_parameters.fa -s 326,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b327_415_learned_parameters.fa -s 327,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b328_415_learned_parameters.fa -s 328,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b329_415_learned_parameters.fa -s 329,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b330_415_learned_parameters.fa -s 330,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b331_415_learned_parameters.fa -s 331,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b332_415_learned_parameters.fa -s 332,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b333_415_learned_parameters.fa -s 333,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b334_415_learned_parameters.fa -s 334,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b335_415_learned_parameters.fa -s 335,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b336_415_learned_parameters.fa -s 336,415

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000028 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000028/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b337_415_learned_parameters.fa -s 337,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b338_415_learned_parameters.fa -s 338,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b339_415_learned_parameters.fa -s 339,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b340_415_learned_parameters.fa -s 340,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b341_415_learned_parameters.fa -s 341,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b342_415_learned_parameters.fa -s 342,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b343_415_learned_parameters.fa -s 343,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b344_415_learned_parameters.fa -s 344,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b345_415_learned_parameters.fa -s 345,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b346_415_learned_parameters.fa -s 346,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b347_415_learned_parameters.fa -s 347,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b348_415_learned_parameters.fa -s 348,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b349_415_learned_parameters.fa -s 349,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b350_415_learned_parameters.fa -s 350,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b351_415_learned_parameters.fa -s 351,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b352_415_learned_parameters.fa -s 352,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b353_415_learned_parameters.fa -s 353,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b354_415_learned_parameters.fa -s 354,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b355_415_learned_parameters.fa -s 355,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b356_415_learned_parameters.fa -s 356,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b357_415_learned_parameters.fa -s 357,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b358_415_learned_parameters.fa -s 358,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b359_415_learned_parameters.fa -s 359,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b360_415_learned_parameters.fa -s 360,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b361_415_learned_parameters.fa -s 361,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b362_415_learned_parameters.fa -s 362,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b363_415_learned_parameters.fa -s 363,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b364_415_learned_parameters.fa -s 364,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b365_415_learned_parameters.fa -s 365,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b366_415_learned_parameters.fa -s 366,415

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000029 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000029/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b367_415_learned_parameters.fa -s 367,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b368_415_learned_parameters.fa -s 368,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b369_415_learned_parameters.fa -s 369,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b370_415_learned_parameters.fa -s 370,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b371_415_learned_parameters.fa -s 371,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b372_415_learned_parameters.fa -s 372,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b373_415_learned_parameters.fa -s 373,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b374_415_learned_parameters.fa -s 374,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b375_415_learned_parameters.fa -s 375,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b376_415_learned_parameters.fa -s 376,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b377_415_learned_parameters.fa -s 377,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b378_415_learned_parameters.fa -s 378,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b379_415_learned_parameters.fa -s 379,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b380_415_learned_parameters.fa -s 380,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b381_415_learned_parameters.fa -s 381,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b382_415_learned_parameters.fa -s 382,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b383_415_learned_parameters.fa -s 383,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b384_415_learned_parameters.fa -s 384,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b385_415_learned_parameters.fa -s 385,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b386_415_learned_parameters.fa -s 386,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b387_415_learned_parameters.fa -s 387,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b388_415_learned_parameters.fa -s 388,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b389_415_learned_parameters.fa -s 389,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b390_415_learned_parameters.fa -s 390,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b391_415_learned_parameters.fa -s 391,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b392_415_learned_parameters.fa -s 392,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b393_415_learned_parameters.fa -s 393,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b394_415_learned_parameters.fa -s 394,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b395_415_learned_parameters.fa -s 395,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b396_415_learned_parameters.fa -s 396,415

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000030 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000030/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b397_415_learned_parameters.fa -s 397,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b398_415_learned_parameters.fa -s 398,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b399_415_learned_parameters.fa -s 399,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b400_415_learned_parameters.fa -s 400,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b401_415_learned_parameters.fa -s 401,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b402_415_learned_parameters.fa -s 402,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b403_415_learned_parameters.fa -s 403,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b404_415_learned_parameters.fa -s 404,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b405_415_learned_parameters.fa -s 405,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b406_415_learned_parameters.fa -s 406,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b407_415_learned_parameters.fa -s 407,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b408_415_learned_parameters.fa -s 408,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b409_415_learned_parameters.fa -s 409,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b410_415_learned_parameters.fa -s 410,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b411_415_learned_parameters.fa -s 411,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b412_415_learned_parameters.fa -s 412,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b413_415_learned_parameters.fa -s 413,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b414_415_learned_parameters.fa -s 414,415 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_118_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_118_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_48_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_48_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_40_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_40_b0_3_learned_parameters.fa -s 0,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_40_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_40_b1_3_learned_parameters.fa -s 1,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_40_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_40_b2_3_learned_parameters.fa -s 2,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_116_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_116_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_113_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_113_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_84_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_84_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_84_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_84_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b0_70_learned_parameters.fa -s 0,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b1_70_learned_parameters.fa -s 1,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b2_70_learned_parameters.fa -s 2,70

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000031 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000031/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b3_70_learned_parameters.fa -s 3,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b4_70_learned_parameters.fa -s 4,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b5_70_learned_parameters.fa -s 5,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b6_70_learned_parameters.fa -s 6,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b7_70_learned_parameters.fa -s 7,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b8_70_learned_parameters.fa -s 8,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b9_70_learned_parameters.fa -s 9,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b10_70_learned_parameters.fa -s 10,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b11_70_learned_parameters.fa -s 11,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b12_70_learned_parameters.fa -s 12,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b13_70_learned_parameters.fa -s 13,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b14_70_learned_parameters.fa -s 14,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b15_70_learned_parameters.fa -s 15,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b16_70_learned_parameters.fa -s 16,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b17_70_learned_parameters.fa -s 17,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b18_70_learned_parameters.fa -s 18,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b19_70_learned_parameters.fa -s 19,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b20_70_learned_parameters.fa -s 20,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b21_70_learned_parameters.fa -s 21,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b22_70_learned_parameters.fa -s 22,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b23_70_learned_parameters.fa -s 23,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b24_70_learned_parameters.fa -s 24,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b25_70_learned_parameters.fa -s 25,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b26_70_learned_parameters.fa -s 26,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b27_70_learned_parameters.fa -s 27,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b28_70_learned_parameters.fa -s 28,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b29_70_learned_parameters.fa -s 29,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b30_70_learned_parameters.fa -s 30,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b31_70_learned_parameters.fa -s 31,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b32_70_learned_parameters.fa -s 32,70

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000032 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000032/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b33_70_learned_parameters.fa -s 33,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b34_70_learned_parameters.fa -s 34,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b35_70_learned_parameters.fa -s 35,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b36_70_learned_parameters.fa -s 36,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b37_70_learned_parameters.fa -s 37,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b38_70_learned_parameters.fa -s 38,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b39_70_learned_parameters.fa -s 39,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b40_70_learned_parameters.fa -s 40,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b41_70_learned_parameters.fa -s 41,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b42_70_learned_parameters.fa -s 42,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b43_70_learned_parameters.fa -s 43,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b44_70_learned_parameters.fa -s 44,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b45_70_learned_parameters.fa -s 45,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b46_70_learned_parameters.fa -s 46,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b47_70_learned_parameters.fa -s 47,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b48_70_learned_parameters.fa -s 48,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b49_70_learned_parameters.fa -s 49,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b50_70_learned_parameters.fa -s 50,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b51_70_learned_parameters.fa -s 51,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b52_70_learned_parameters.fa -s 52,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b53_70_learned_parameters.fa -s 53,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b54_70_learned_parameters.fa -s 54,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b55_70_learned_parameters.fa -s 55,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b56_70_learned_parameters.fa -s 56,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b57_70_learned_parameters.fa -s 57,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b58_70_learned_parameters.fa -s 58,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b59_70_learned_parameters.fa -s 59,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b60_70_learned_parameters.fa -s 60,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b61_70_learned_parameters.fa -s 61,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b62_70_learned_parameters.fa -s 62,70

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000033 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000033/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b63_70_learned_parameters.fa -s 63,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b64_70_learned_parameters.fa -s 64,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b65_70_learned_parameters.fa -s 65,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b66_70_learned_parameters.fa -s 66,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b67_70_learned_parameters.fa -s 67,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b68_70_learned_parameters.fa -s 68,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b69_70_learned_parameters.fa -s 69,70 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_20_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_20_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_20_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_20_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_45_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_45_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_45_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_45_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_60_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_60_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_24_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_24_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_24_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_24_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_2_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_2_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_2_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_2_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_57_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_57_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_112_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_112_b0_5_learned_parameters.fa -s 0,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_112_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_112_b1_5_learned_parameters.fa -s 1,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_112_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_112_b2_5_learned_parameters.fa -s 2,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_112_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_112_b3_5_learned_parameters.fa -s 3,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_112_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_112_b4_5_learned_parameters.fa -s 4,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_3_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_3_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_23_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_23_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_23_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_23_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_120_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_120_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_120_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_120_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_107_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_107_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_78_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_78_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_78_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_78_b1_2_learned_parameters.fa -s 1,2

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000034 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000034/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_102_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_102_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_102_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_102_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_55_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_55_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_17_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_17_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_17_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_17_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_1_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_1_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_9_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_9_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_108_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_108_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_108_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_108_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_19_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_19_b0_4_learned_parameters.fa -s 0,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_19_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_19_b1_4_learned_parameters.fa -s 1,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_19_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_19_b2_4_learned_parameters.fa -s 2,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_19_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_19_b3_4_learned_parameters.fa -s 3,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_101_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_101_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_101_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_101_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_83_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_83_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_129_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_129_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_129_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_129_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_98_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_98_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_135_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_135_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_28_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_28_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_22_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_22_b0_3_learned_parameters.fa -s 0,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_22_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_22_b1_3_learned_parameters.fa -s 1,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_22_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_22_b2_3_learned_parameters.fa -s 2,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_68_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_68_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_56_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_56_b0_3_learned_parameters.fa -s 0,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_56_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_56_b1_3_learned_parameters.fa -s 1,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_56_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_56_b2_3_learned_parameters.fa -s 2,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_4_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_4_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b0_15_learned_parameters.fa -s 0,15

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000035 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000035/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b1_15_learned_parameters.fa -s 1,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b2_15_learned_parameters.fa -s 2,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b3_15_learned_parameters.fa -s 3,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b4_15_learned_parameters.fa -s 4,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b5_15_learned_parameters.fa -s 5,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b6_15_learned_parameters.fa -s 6,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b7_15_learned_parameters.fa -s 7,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b8_15_learned_parameters.fa -s 8,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b9_15_learned_parameters.fa -s 9,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b10_15_learned_parameters.fa -s 10,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b11_15_learned_parameters.fa -s 11,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b12_15_learned_parameters.fa -s 12,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b13_15_learned_parameters.fa -s 13,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b14_15_learned_parameters.fa -s 14,15 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_35_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_35_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_6_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_6_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_92_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_92_b0_3_learned_parameters.fa -s 0,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_92_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_92_b1_3_learned_parameters.fa -s 1,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_92_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_92_b2_3_learned_parameters.fa -s 2,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_88_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_88_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_88_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_88_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_16_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_16_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_96_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_96_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_97_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_97_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_97_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_97_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_131_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_131_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_131_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_131_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_77_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_77_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_77_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_77_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_95_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_95_b0_2_learned_parameters.fa -s 0,2

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000036 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000036/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_95_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_95_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_125_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_125_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_5_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_5_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_10_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_10_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_10_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_10_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_109_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_109_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_109_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_109_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_30_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_30_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_30_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_30_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_117_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_117_b0_3_learned_parameters.fa -s 0,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_117_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_117_b1_3_learned_parameters.fa -s 1,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_117_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_117_b2_3_learned_parameters.fa -s 2,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_103_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_103_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_87_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_87_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_87_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_87_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_70_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_70_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_70_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_70_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_34_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_34_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b0_8_learned_parameters.fa -s 0,8 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b1_8_learned_parameters.fa -s 1,8 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b2_8_learned_parameters.fa -s 2,8 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b3_8_learned_parameters.fa -s 3,8 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b4_8_learned_parameters.fa -s 4,8 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b5_8_learned_parameters.fa -s 5,8 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b6_8_learned_parameters.fa -s 6,8 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b7_8_learned_parameters.fa -s 7,8 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_81_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_81_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_62_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_62_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b0_56_learned_parameters.fa -s 0,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b1_56_learned_parameters.fa -s 1,56

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000037 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000037/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b2_56_learned_parameters.fa -s 2,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b3_56_learned_parameters.fa -s 3,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b4_56_learned_parameters.fa -s 4,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b5_56_learned_parameters.fa -s 5,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b6_56_learned_parameters.fa -s 6,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b7_56_learned_parameters.fa -s 7,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b8_56_learned_parameters.fa -s 8,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b9_56_learned_parameters.fa -s 9,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b10_56_learned_parameters.fa -s 10,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b11_56_learned_parameters.fa -s 11,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b12_56_learned_parameters.fa -s 12,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b13_56_learned_parameters.fa -s 13,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b14_56_learned_parameters.fa -s 14,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b15_56_learned_parameters.fa -s 15,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b16_56_learned_parameters.fa -s 16,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b17_56_learned_parameters.fa -s 17,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b18_56_learned_parameters.fa -s 18,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b19_56_learned_parameters.fa -s 19,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b20_56_learned_parameters.fa -s 20,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b21_56_learned_parameters.fa -s 21,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b22_56_learned_parameters.fa -s 22,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b23_56_learned_parameters.fa -s 23,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b24_56_learned_parameters.fa -s 24,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b25_56_learned_parameters.fa -s 25,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b26_56_learned_parameters.fa -s 26,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b27_56_learned_parameters.fa -s 27,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b28_56_learned_parameters.fa -s 28,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b29_56_learned_parameters.fa -s 29,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b30_56_learned_parameters.fa -s 30,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b31_56_learned_parameters.fa -s 31,56

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000038 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000038/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b32_56_learned_parameters.fa -s 32,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b33_56_learned_parameters.fa -s 33,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b34_56_learned_parameters.fa -s 34,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b35_56_learned_parameters.fa -s 35,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b36_56_learned_parameters.fa -s 36,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b37_56_learned_parameters.fa -s 37,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b38_56_learned_parameters.fa -s 38,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b39_56_learned_parameters.fa -s 39,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b40_56_learned_parameters.fa -s 40,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b41_56_learned_parameters.fa -s 41,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b42_56_learned_parameters.fa -s 42,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b43_56_learned_parameters.fa -s 43,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b44_56_learned_parameters.fa -s 44,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b45_56_learned_parameters.fa -s 45,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b46_56_learned_parameters.fa -s 46,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b47_56_learned_parameters.fa -s 47,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b48_56_learned_parameters.fa -s 48,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b49_56_learned_parameters.fa -s 49,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b50_56_learned_parameters.fa -s 50,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b51_56_learned_parameters.fa -s 51,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b52_56_learned_parameters.fa -s 52,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b53_56_learned_parameters.fa -s 53,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b54_56_learned_parameters.fa -s 54,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b55_56_learned_parameters.fa -s 55,56 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_90_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_90_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_133_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_133_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_126_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_126_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_126_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_126_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_69_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_69_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_27_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_27_b0_4_learned_parameters.fa -s 0,4

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000039 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285982/iteration1/scatter.0000000039/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285982   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_27_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_27_b1_4_learned_parameters.fa -s 1,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_27_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_27_b2_4_learned_parameters.fa -s 2,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_27_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_27_b3_4_learned_parameters.fa -s 3,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_128_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_128_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_21_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_21_learned_parameters.fa

Finished submitting scatter jobs at Thu Jan 10 15:07:16 2013 in 1.70458965302 minutes
calling:  bsub -E cd "/xchip/tcga" && cd "/xchip/cga" -q cga -R select[tmp>1000 && scratch>1] -e scatter-gather.err.txt -o scatter-gather.out.txt -w ended(scatter_285982) -J gather_285982 -P test -R rusage[mem=16] -sp 65   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Gather.py   0 0.001000

calling:  bsub -E cd "/xchip/cga" -q cga -R select[tmp>1000 && scratch>1] -e iterator.err.txt -o iterator.out.txt -w ended(gather_285982) -J iteration_285982 -P test -sp 65   /xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/scatter-gather-iterator.py /xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/iterative-scatter-gather.py --job-suffix 285982 --priority 65 cga /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/scatter-gather.xml /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/
Path iteration1 exists:  True
