Job <124618> is submitted to queue <cga>.
calling:  bsub -r -R select[tmp>1000 && scratch>1] -q cga -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1 -E cd "/xchip/tcga" && cd "/xchip/cga" -e prepare.err -oo prepare.out -K -R rusage[mem=4] -P test python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Prepare.py /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/ 1 0.001 /xchip/cga/gdac-prod/tcga-gdac/jobResults/ParadigmPrepare/COAD-TP/2282981/0.ParadigmPrepare.Finished/clusterFiles.tar /xchip/cga/gdac-prod/tcga-gdac/jobResults/ParadigmPrepare/COAD-TP/2282981/0.ParadigmPrepare.Finished/config.txt /xchip/cga/gdac-prod/tcga-gdac/jobResults/ParadigmPrepare/COAD-TP/2282981/0.ParadigmPrepare.Finished/configEM.txt /xchip/cga/gdac-prod/tcga-gdac/jobResults/ParadigmPrepare/COAD-TP/2282981/0.ParadigmPrepare.Finished/jobs.sh /xchip/cga/gdac-prod/tcga-gdac/jobResults/ParadigmPrepare/COAD-TP/2282981/0.ParadigmPrepare.Finished/templateEM.sh /xchip/cga/gdac-prod/tcga-gdac/jobResults/ParadigmPrepare/COAD-TP/2282981/0.ParadigmPrepare.Finished/params0.txt
Started submitting scatter jobs at Thu Jan 10 13:54:47 2013
calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000001 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000001/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285665   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_36_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_36_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_49_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_49_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_61_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_61_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_41_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_41_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_7_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_7_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_79_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_79_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_124_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_124_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_14_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_14_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_100_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_100_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_93_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_93_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_86_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_86_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_46_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_46_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_123_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_123_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_80_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_80_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_15_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_15_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_39_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_39_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_89_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_89_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_127_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_127_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_13_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_13_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_75_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_75_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b0_48_learned_parameters.fa -s 0,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b1_48_learned_parameters.fa -s 1,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b2_48_learned_parameters.fa -s 2,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b3_48_learned_parameters.fa -s 3,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b4_48_learned_parameters.fa -s 4,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b5_48_learned_parameters.fa -s 5,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b6_48_learned_parameters.fa -s 6,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b7_48_learned_parameters.fa -s 7,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b8_48_learned_parameters.fa -s 8,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b9_48_learned_parameters.fa -s 9,48

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000002 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000002/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285665   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b10_48_learned_parameters.fa -s 10,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b11_48_learned_parameters.fa -s 11,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b12_48_learned_parameters.fa -s 12,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b13_48_learned_parameters.fa -s 13,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b14_48_learned_parameters.fa -s 14,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b15_48_learned_parameters.fa -s 15,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b16_48_learned_parameters.fa -s 16,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b17_48_learned_parameters.fa -s 17,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b18_48_learned_parameters.fa -s 18,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b19_48_learned_parameters.fa -s 19,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b20_48_learned_parameters.fa -s 20,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b21_48_learned_parameters.fa -s 21,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b22_48_learned_parameters.fa -s 22,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b23_48_learned_parameters.fa -s 23,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b24_48_learned_parameters.fa -s 24,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b25_48_learned_parameters.fa -s 25,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b26_48_learned_parameters.fa -s 26,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b27_48_learned_parameters.fa -s 27,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b28_48_learned_parameters.fa -s 28,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b29_48_learned_parameters.fa -s 29,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b30_48_learned_parameters.fa -s 30,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b31_48_learned_parameters.fa -s 31,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b32_48_learned_parameters.fa -s 32,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b33_48_learned_parameters.fa -s 33,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b34_48_learned_parameters.fa -s 34,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b35_48_learned_parameters.fa -s 35,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b36_48_learned_parameters.fa -s 36,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b37_48_learned_parameters.fa -s 37,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b38_48_learned_parameters.fa -s 38,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b39_48_learned_parameters.fa -s 39,48

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000003 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000003/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285665   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b40_48_learned_parameters.fa -s 40,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b41_48_learned_parameters.fa -s 41,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b42_48_learned_parameters.fa -s 42,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b43_48_learned_parameters.fa -s 43,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b44_48_learned_parameters.fa -s 44,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b45_48_learned_parameters.fa -s 45,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b46_48_learned_parameters.fa -s 46,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b47_48_learned_parameters.fa -s 47,48 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_82_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_82_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_119_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_119_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b0_10_learned_parameters.fa -s 0,10 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b1_10_learned_parameters.fa -s 1,10 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b2_10_learned_parameters.fa -s 2,10 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b3_10_learned_parameters.fa -s 3,10 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b4_10_learned_parameters.fa -s 4,10 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b5_10_learned_parameters.fa -s 5,10 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b6_10_learned_parameters.fa -s 6,10 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b7_10_learned_parameters.fa -s 7,10 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b8_10_learned_parameters.fa -s 8,10 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b9_10_learned_parameters.fa -s 9,10 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_52_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_52_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_65_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_65_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_130_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_130_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_85_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_85_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_51_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_51_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_43_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_43_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_110_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_110_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_50_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_50_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_50_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_50_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_106_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_106_learned_parameters.fa

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000004 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000004/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285665   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_54_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_54_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_31_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_31_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_74_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_74_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_72_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_72_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_72_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_72_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_18_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_18_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_37_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_37_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_33_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_33_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_122_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_122_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_26_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_26_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_64_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_64_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_66_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_66_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_47_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_47_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_25_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_25_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_73_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_73_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_67_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_67_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_76_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_76_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_11_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_11_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_71_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_71_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b0_4_learned_parameters.fa -s 0,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b1_4_learned_parameters.fa -s 1,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b2_4_learned_parameters.fa -s 2,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b3_4_learned_parameters.fa -s 3,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_114_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_114_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_53_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_53_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_38_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_38_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b0_52_learned_parameters.fa -s 0,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b1_52_learned_parameters.fa -s 1,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b2_52_learned_parameters.fa -s 2,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b3_52_learned_parameters.fa -s 3,52

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000005 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000005/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285665   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b4_52_learned_parameters.fa -s 4,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b5_52_learned_parameters.fa -s 5,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b6_52_learned_parameters.fa -s 6,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b7_52_learned_parameters.fa -s 7,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b8_52_learned_parameters.fa -s 8,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b9_52_learned_parameters.fa -s 9,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b10_52_learned_parameters.fa -s 10,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b11_52_learned_parameters.fa -s 11,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b12_52_learned_parameters.fa -s 12,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b13_52_learned_parameters.fa -s 13,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b14_52_learned_parameters.fa -s 14,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b15_52_learned_parameters.fa -s 15,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b16_52_learned_parameters.fa -s 16,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b17_52_learned_parameters.fa -s 17,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b18_52_learned_parameters.fa -s 18,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b19_52_learned_parameters.fa -s 19,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b20_52_learned_parameters.fa -s 20,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b21_52_learned_parameters.fa -s 21,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b22_52_learned_parameters.fa -s 22,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b23_52_learned_parameters.fa -s 23,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b24_52_learned_parameters.fa -s 24,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b25_52_learned_parameters.fa -s 25,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b26_52_learned_parameters.fa -s 26,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b27_52_learned_parameters.fa -s 27,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b28_52_learned_parameters.fa -s 28,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b29_52_learned_parameters.fa -s 29,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b30_52_learned_parameters.fa -s 30,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b31_52_learned_parameters.fa -s 31,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b32_52_learned_parameters.fa -s 32,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b33_52_learned_parameters.fa -s 33,52

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000006 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000006/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285665   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b34_52_learned_parameters.fa -s 34,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b35_52_learned_parameters.fa -s 35,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b36_52_learned_parameters.fa -s 36,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b37_52_learned_parameters.fa -s 37,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b38_52_learned_parameters.fa -s 38,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b39_52_learned_parameters.fa -s 39,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b40_52_learned_parameters.fa -s 40,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b41_52_learned_parameters.fa -s 41,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b42_52_learned_parameters.fa -s 42,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b43_52_learned_parameters.fa -s 43,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b44_52_learned_parameters.fa -s 44,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b45_52_learned_parameters.fa -s 45,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b46_52_learned_parameters.fa -s 46,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b47_52_learned_parameters.fa -s 47,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b48_52_learned_parameters.fa -s 48,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b49_52_learned_parameters.fa -s 49,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b50_52_learned_parameters.fa -s 50,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b51_52_learned_parameters.fa -s 51,52 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_134_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_134_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_94_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_94_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_44_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_44_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_111_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_111_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_115_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_115_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_12_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_12_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b0_122_learned_parameters.fa -s 0,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b1_122_learned_parameters.fa -s 1,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b2_122_learned_parameters.fa -s 2,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b3_122_learned_parameters.fa -s 3,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b4_122_learned_parameters.fa -s 4,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b5_122_learned_parameters.fa -s 5,122

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000007 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000007/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285665   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b6_122_learned_parameters.fa -s 6,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b7_122_learned_parameters.fa -s 7,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b8_122_learned_parameters.fa -s 8,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b9_122_learned_parameters.fa -s 9,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b10_122_learned_parameters.fa -s 10,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b11_122_learned_parameters.fa -s 11,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b12_122_learned_parameters.fa -s 12,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b13_122_learned_parameters.fa -s 13,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b14_122_learned_parameters.fa -s 14,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b15_122_learned_parameters.fa -s 15,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b16_122_learned_parameters.fa -s 16,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b17_122_learned_parameters.fa -s 17,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b18_122_learned_parameters.fa -s 18,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b19_122_learned_parameters.fa -s 19,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b20_122_learned_parameters.fa -s 20,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b21_122_learned_parameters.fa -s 21,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b22_122_learned_parameters.fa -s 22,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b23_122_learned_parameters.fa -s 23,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b24_122_learned_parameters.fa -s 24,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b25_122_learned_parameters.fa -s 25,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b26_122_learned_parameters.fa -s 26,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b27_122_learned_parameters.fa -s 27,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b28_122_learned_parameters.fa -s 28,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b29_122_learned_parameters.fa -s 29,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b30_122_learned_parameters.fa -s 30,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b31_122_learned_parameters.fa -s 31,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b32_122_learned_parameters.fa -s 32,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b33_122_learned_parameters.fa -s 33,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b34_122_learned_parameters.fa -s 34,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b35_122_learned_parameters.fa -s 35,122

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000008 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000008/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285665   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b36_122_learned_parameters.fa -s 36,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b37_122_learned_parameters.fa -s 37,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b38_122_learned_parameters.fa -s 38,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b39_122_learned_parameters.fa -s 39,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b40_122_learned_parameters.fa -s 40,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b41_122_learned_parameters.fa -s 41,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b42_122_learned_parameters.fa -s 42,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b43_122_learned_parameters.fa -s 43,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b44_122_learned_parameters.fa -s 44,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b45_122_learned_parameters.fa -s 45,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b46_122_learned_parameters.fa -s 46,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b47_122_learned_parameters.fa -s 47,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b48_122_learned_parameters.fa -s 48,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b49_122_learned_parameters.fa -s 49,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b50_122_learned_parameters.fa -s 50,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b51_122_learned_parameters.fa -s 51,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b52_122_learned_parameters.fa -s 52,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b53_122_learned_parameters.fa -s 53,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b54_122_learned_parameters.fa -s 54,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b55_122_learned_parameters.fa -s 55,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b56_122_learned_parameters.fa -s 56,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b57_122_learned_parameters.fa -s 57,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b58_122_learned_parameters.fa -s 58,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b59_122_learned_parameters.fa -s 59,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b60_122_learned_parameters.fa -s 60,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b61_122_learned_parameters.fa -s 61,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b62_122_learned_parameters.fa -s 62,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b63_122_learned_parameters.fa -s 63,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b64_122_learned_parameters.fa -s 64,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b65_122_learned_parameters.fa -s 65,122

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000009 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000009/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285665   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b66_122_learned_parameters.fa -s 66,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b67_122_learned_parameters.fa -s 67,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b68_122_learned_parameters.fa -s 68,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b69_122_learned_parameters.fa -s 69,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b70_122_learned_parameters.fa -s 70,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b71_122_learned_parameters.fa -s 71,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b72_122_learned_parameters.fa -s 72,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b73_122_learned_parameters.fa -s 73,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b74_122_learned_parameters.fa -s 74,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b75_122_learned_parameters.fa -s 75,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b76_122_learned_parameters.fa -s 76,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b77_122_learned_parameters.fa -s 77,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b78_122_learned_parameters.fa -s 78,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b79_122_learned_parameters.fa -s 79,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b80_122_learned_parameters.fa -s 80,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b81_122_learned_parameters.fa -s 81,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b82_122_learned_parameters.fa -s 82,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b83_122_learned_parameters.fa -s 83,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b84_122_learned_parameters.fa -s 84,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b85_122_learned_parameters.fa -s 85,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b86_122_learned_parameters.fa -s 86,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b87_122_learned_parameters.fa -s 87,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b88_122_learned_parameters.fa -s 88,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b89_122_learned_parameters.fa -s 89,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b90_122_learned_parameters.fa -s 90,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b91_122_learned_parameters.fa -s 91,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b92_122_learned_parameters.fa -s 92,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b93_122_learned_parameters.fa -s 93,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b94_122_learned_parameters.fa -s 94,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b95_122_learned_parameters.fa -s 95,122

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000010 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000010/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285665   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b96_122_learned_parameters.fa -s 96,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b97_122_learned_parameters.fa -s 97,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b98_122_learned_parameters.fa -s 98,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b99_122_learned_parameters.fa -s 99,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b100_122_learned_parameters.fa -s 100,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b101_122_learned_parameters.fa -s 101,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b102_122_learned_parameters.fa -s 102,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b103_122_learned_parameters.fa -s 103,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b104_122_learned_parameters.fa -s 104,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b105_122_learned_parameters.fa -s 105,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b106_122_learned_parameters.fa -s 106,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b107_122_learned_parameters.fa -s 107,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b108_122_learned_parameters.fa -s 108,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b109_122_learned_parameters.fa -s 109,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b110_122_learned_parameters.fa -s 110,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b111_122_learned_parameters.fa -s 111,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b112_122_learned_parameters.fa -s 112,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b113_122_learned_parameters.fa -s 113,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b114_122_learned_parameters.fa -s 114,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b115_122_learned_parameters.fa -s 115,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b116_122_learned_parameters.fa -s 116,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b117_122_learned_parameters.fa -s 117,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b118_122_learned_parameters.fa -s 118,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b119_122_learned_parameters.fa -s 119,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b120_122_learned_parameters.fa -s 120,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b121_122_learned_parameters.fa -s 121,122 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_118_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_118_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_48_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_48_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_40_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_40_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_116_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_116_learned_parameters.fa

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000011 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000011/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285665   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_113_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_113_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_84_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_84_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b0_21_learned_parameters.fa -s 0,21 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b1_21_learned_parameters.fa -s 1,21 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b2_21_learned_parameters.fa -s 2,21 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b3_21_learned_parameters.fa -s 3,21 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b4_21_learned_parameters.fa -s 4,21 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b5_21_learned_parameters.fa -s 5,21 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b6_21_learned_parameters.fa -s 6,21 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b7_21_learned_parameters.fa -s 7,21 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b8_21_learned_parameters.fa -s 8,21 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b9_21_learned_parameters.fa -s 9,21 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b10_21_learned_parameters.fa -s 10,21 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b11_21_learned_parameters.fa -s 11,21 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b12_21_learned_parameters.fa -s 12,21 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b13_21_learned_parameters.fa -s 13,21 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b14_21_learned_parameters.fa -s 14,21 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b15_21_learned_parameters.fa -s 15,21 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b16_21_learned_parameters.fa -s 16,21 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b17_21_learned_parameters.fa -s 17,21 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b18_21_learned_parameters.fa -s 18,21 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b19_21_learned_parameters.fa -s 19,21 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b20_21_learned_parameters.fa -s 20,21 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_20_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_20_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_45_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_45_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_60_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_60_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_24_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_24_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_2_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_2_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_57_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_57_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_112_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_112_b0_2_learned_parameters.fa -s 0,2

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000012 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000012/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285665   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_112_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_112_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_3_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_3_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_23_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_23_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_120_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_120_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_107_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_107_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_78_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_78_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_102_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_102_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_55_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_55_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_17_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_17_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_1_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_1_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_9_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_9_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_108_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_108_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_19_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_19_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_101_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_101_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_83_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_83_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_129_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_129_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_98_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_98_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_135_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_135_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_28_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_28_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_22_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_22_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_68_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_68_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_56_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_56_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_4_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_4_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b0_5_learned_parameters.fa -s 0,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b1_5_learned_parameters.fa -s 1,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b2_5_learned_parameters.fa -s 2,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b3_5_learned_parameters.fa -s 3,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b4_5_learned_parameters.fa -s 4,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_35_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_35_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_6_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_6_learned_parameters.fa

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000013 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000013/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285665   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_92_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_92_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_88_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_88_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_16_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_16_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_96_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_96_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_97_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_97_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_131_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_131_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_77_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_77_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_95_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_95_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_125_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_125_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_5_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_5_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_10_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_10_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_109_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_109_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_30_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_30_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_117_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_117_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_103_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_103_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_87_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_87_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_70_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_70_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_34_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_34_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b0_3_learned_parameters.fa -s 0,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b1_3_learned_parameters.fa -s 1,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b2_3_learned_parameters.fa -s 2,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_81_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_81_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_62_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_62_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b0_17_learned_parameters.fa -s 0,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b1_17_learned_parameters.fa -s 1,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b2_17_learned_parameters.fa -s 2,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b3_17_learned_parameters.fa -s 3,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b4_17_learned_parameters.fa -s 4,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b5_17_learned_parameters.fa -s 5,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b6_17_learned_parameters.fa -s 6,17

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000014 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/285665/iteration1/scatter.0000000014/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_285665   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b7_17_learned_parameters.fa -s 7,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b8_17_learned_parameters.fa -s 8,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b9_17_learned_parameters.fa -s 9,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b10_17_learned_parameters.fa -s 10,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b11_17_learned_parameters.fa -s 11,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b12_17_learned_parameters.fa -s 12,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b13_17_learned_parameters.fa -s 13,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b14_17_learned_parameters.fa -s 14,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b15_17_learned_parameters.fa -s 15,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b16_17_learned_parameters.fa -s 16,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_90_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_90_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_133_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_133_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_126_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_126_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_69_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_69_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_27_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_27_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_128_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_128_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_21_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_21_learned_parameters.fa

Finished submitting scatter jobs at Thu Jan 10 13:54:58 2013 in 0.193260117372 minutes
calling:  bsub -E cd "/xchip/tcga" && cd "/xchip/cga" -q cga -R select[tmp>1000 && scratch>1] -e scatter-gather.err.txt -o scatter-gather.out.txt -w ended(scatter_285665) -J gather_285665 -P test -R rusage[mem=16] -sp 65   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/Gather.py   0 0.001000

calling:  bsub -E cd "/xchip/cga" -q cga -R select[tmp>1000 && scratch>1] -e iterator.err.txt -o iterator.out.txt -w ended(gather_285665) -J iteration_285665 -P test -sp 65   /xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/scatter-gather-iterator.py /xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/iterative-scatter-gather.py --job-suffix 285665 --priority 65 cga /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/scatter-gather.xml /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.21.3374/
Path iteration1 exists:  True
