GetReducedSegments1 seglist | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/COADREAD-TP/2169384/2.GDAC_MergeDataFiles.Finished/COADREAD-TP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt |
GetReducedSegments1 by | gene |
GetReducedSegments1 featurename | Hybridization.REF |
GetReducedSegments1 imput | FALSE |
GetReducedSegments1 XY | FALSE |
GetReducedSegments1 what | median |
GetReducedSegments1 outname | COADREAD-TP |
GetReducedSegments1 segmentid | Sample |
GetReducedSegments1 chromosome | Chromosome |
GetReducedSegments1 start | Start |
GetReducedSegments1 end | End |
GetReducedSegments1 segmean | Segment_Mean |
Execution Times: | |
Submitted: | 12:11:55 10-01-13 |
Completed: | |
Elapsed: | 00 hrs 02 mins 07 secs |
step 1. GetReducedSegments [id: 284264] Taking a copy number level 3 data and then converting it to a gene by sample matrix
urn:lsid:broadinstitute.org:cancer.genome.analysis:00240:28
seglist | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/COADREAD-TP/2169384/2.GDAC_MergeDataFiles.Finished/COADREAD-TP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt |
by | gene |
featurename | Hybridization.REF |
imput | FALSE |
XY | FALSE |
what | median |
outname | COADREAD-TP |
segmentid | Sample |
chromosome | Chromosome |
start | Start |
end | End |
segmean | Segment_Mean |
Output Files: | |
COADREAD-TP.RS.tsv | |
.lsf.out | |
stdout.txt |
Execution Times: | |
Submitted: | 12:12:11 10-01-13 |
Completed: | 12:14:02 10-01-13 |
Elapsed: | 00 hrs 01 mins 51 secs |