# Created: Fri Jan 11 00:23:23 EST 2013 by cgaadm_deadline
# Job: 286980    server:  http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/
# Module: GDAC_MutSig_Report urn:lsid:broadinstitute.org:cancer.genome.analysis:00413:36
# Parameters: 
#    bar_plot = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD-TP/2283937/0.MutSigRun.Finished/COADREAD-TP.bargraphs.png
#    breakdown_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD-TP/2283937/0.MutSigRun.Finished/COADREAD-TP.mutation_breakdown.txt
#    categories_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD-TP/2283937/0.MutSigRun.Finished/COADREAD-TP.mutation_rates.txt
#    coverage.png = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD-TP/2283937/0.MutSigRun.Finished/COADREAD-TP.covplot.png
#    sig_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD-TP/2283937/0.MutSigRun.Finished/COADREAD-TP.sig_genes.txt
#    cosmic_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD-TP/2283937/0.MutSigRun.Finished/COADREAD-TP.cosmic_sig_genes.txt
#    cosmic_table2 = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD-TP/2283937/0.MutSigRun.Finished/COADREAD-TP.cosmic_sig_genes2.txt
#    cosmic_muts_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD-TP/2283937/0.MutSigRun.Finished/COADREAD-TP.cosmic_mutations.txt
#    cluster_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD-TP/2283937/0.MutSigRun.Finished/COADREAD-TP.clustered_muts.txt
#    geneset_table = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD-TP/2283937/0.MutSigRun.Finished/COADREAD-TP.sig_genesets.txt
#    genset_table2 = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD-TP/2283937/0.MutSigRun.Finished/COADREAD-TP.sig_genesets_2.txt
#    patients_c_and_r = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD-TP/2283937/0.MutSigRun.Finished/COADREAD-TP.patients.counts_and_rates.txt
#    ind_set = COADREAD-TP
#    mutsig_version = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD-TP/2283937/0.MutSigRun.Finished/COADREAD-TP.MutSig_version.txt
#    coMut_plot_png = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/CoMut/COADREAD-TP/2288074/0.CoMut.Finished/COADREAD-TP_coMut.png
#    coMut_plot_pdf = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/CoMut/COADREAD-TP/2288074/0.CoMut.Finished/COADREAD-TP_coMut.pdf
#    stick_figures_path = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GenerateStickFigures/COADREAD-TP/2288077/0.GenerateStickFigures.Finished/generatedStickFigurePaths.txt
#    maf_path = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD-TP/2283937/0.MutSigRun.Finished/COADREAD-TP.final_analysis_set.maf
#    mut_pre_rep_path = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD-TP/2283727/0.MutSigPreprocess.Finished/COADREAD-TP.mutation_preprocessing_report.txt
#    mut_filt_rep_path = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigRun/COADREAD-TP/2283937/0.MutSigRun.Finished/COADREAD-TP.mutation_filtering_report.txt
