Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
Correlate_Clinical_Clusters_onlysig1.cluster.label.file	LIHC-TP.mergedcluster.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	table.1.txt	Correlation-Clinical_MolecularSubtypes	Level_4	text	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.cluster.label.file	LIHC-TP.mergedcluster.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	supp.table6.txt	Correlation-Clinical_MolecularSubtypes	Level_4	text	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.cluster.label.file	LIHC-TP.mergedcluster.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	supp.table5.txt	Correlation-Clinical_MolecularSubtypes	Level_4	text	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.cluster.label.file	LIHC-TP.mergedcluster.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	supp.table4.txt	Correlation-Clinical_MolecularSubtypes	Level_4	text	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.cluster.label.file	LIHC-TP.mergedcluster.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	supp.table3.txt	Correlation-Clinical_MolecularSubtypes	Level_4	text	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.cluster.label.file	LIHC-TP.mergedcluster.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D4V2.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.cluster.label.file	LIHC-TP.mergedcluster.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D2V1.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.cluster.label.file	LIHC-TP.mergedcluster.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D2V3.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.cluster.label.file	LIHC-TP.mergedcluster.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D3V3.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.cluster.label.file	LIHC-TP.mergedcluster.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D2V2.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.cluster.label.file	LIHC-TP.mergedcluster.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D4V3.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.cluster.label.file	LIHC-TP.mergedcluster.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D1V3.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.cluster.label.file	LIHC-TP.mergedcluster.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D4V1.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.cluster.label.file	LIHC-TP.mergedcluster.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D1V2.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.cluster.label.file	LIHC-TP.mergedcluster.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D3V1.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.cluster.label.file	LIHC-TP.mergedcluster.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D1V1.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.cluster.label.file	LIHC-TP.mergedcluster.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D3V2.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.cluster.label.file	LIHC-TP.mergedcluster.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.cluster.label.file	LIHC-TP.mergedcluster.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.clinical.info.file	LIHC-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LIHC-TP.Clinical_Pick_Tier1.Level_4.2012122100.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	table.1.txt	Correlation-Clinical_MolecularSubtypes	Level_4	text	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.clinical.info.file	LIHC-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LIHC-TP.Clinical_Pick_Tier1.Level_4.2012122100.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	supp.table6.txt	Correlation-Clinical_MolecularSubtypes	Level_4	text	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.clinical.info.file	LIHC-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LIHC-TP.Clinical_Pick_Tier1.Level_4.2012122100.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	supp.table5.txt	Correlation-Clinical_MolecularSubtypes	Level_4	text	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.clinical.info.file	LIHC-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LIHC-TP.Clinical_Pick_Tier1.Level_4.2012122100.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	supp.table4.txt	Correlation-Clinical_MolecularSubtypes	Level_4	text	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.clinical.info.file	LIHC-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LIHC-TP.Clinical_Pick_Tier1.Level_4.2012122100.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	supp.table3.txt	Correlation-Clinical_MolecularSubtypes	Level_4	text	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.clinical.info.file	LIHC-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LIHC-TP.Clinical_Pick_Tier1.Level_4.2012122100.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D4V2.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.clinical.info.file	LIHC-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LIHC-TP.Clinical_Pick_Tier1.Level_4.2012122100.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D2V1.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.clinical.info.file	LIHC-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LIHC-TP.Clinical_Pick_Tier1.Level_4.2012122100.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D2V3.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.clinical.info.file	LIHC-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LIHC-TP.Clinical_Pick_Tier1.Level_4.2012122100.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D3V3.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.clinical.info.file	LIHC-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LIHC-TP.Clinical_Pick_Tier1.Level_4.2012122100.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D2V2.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.clinical.info.file	LIHC-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LIHC-TP.Clinical_Pick_Tier1.Level_4.2012122100.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D4V3.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.clinical.info.file	LIHC-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LIHC-TP.Clinical_Pick_Tier1.Level_4.2012122100.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D1V3.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.clinical.info.file	LIHC-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LIHC-TP.Clinical_Pick_Tier1.Level_4.2012122100.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D4V1.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.clinical.info.file	LIHC-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LIHC-TP.Clinical_Pick_Tier1.Level_4.2012122100.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D1V2.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.clinical.info.file	LIHC-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LIHC-TP.Clinical_Pick_Tier1.Level_4.2012122100.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D3V1.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.clinical.info.file	LIHC-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LIHC-TP.Clinical_Pick_Tier1.Level_4.2012122100.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D1V1.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.clinical.info.file	LIHC-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LIHC-TP.Clinical_Pick_Tier1.Level_4.2012122100.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	D3V2.png	Correlation-Clinical_MolecularSubtypes	Level_4	png	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.clinical.info.file	LIHC-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LIHC-TP.Clinical_Pick_Tier1.Level_4.2012122100.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
Correlate_Clinical_Clusters_onlysig1.clinical.info.file	LIHC-TP.clin.merged.picked.txt	gdac.broadinstitute.org_LIHC-TP.Clinical_Pick_Tier1.Level_4.2012122100.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00338:39	Correlate_Clinical_vs_Molecular_Signatures_2012122100	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_LIHC-TP.Correlate_Clinical_vs_Molecular_Signatures.Level_4.2012122100.0.0	yes
