Job <165526> is submitted to queue <cga>.
calling:  bsub -r -R select[tmp>1000 && scratch>1] -q cga -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1 -E cd "/xchip/tcga" && cd "/xchip/cga" -e prepare.err -oo prepare.out -K -R rusage[mem=4] -P test python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Prepare.py /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/ 1 0.001 /xchip/cga/gdac-prod/tcga-gdac/jobResults/ParadigmPrepare/OV-TP/2284630/0.ParadigmPrepare.Finished/clusterFiles.tar /xchip/cga/gdac-prod/tcga-gdac/jobResults/ParadigmPrepare/OV-TP/2284630/0.ParadigmPrepare.Finished/config.txt /xchip/cga/gdac-prod/tcga-gdac/jobResults/ParadigmPrepare/OV-TP/2284630/0.ParadigmPrepare.Finished/configEM.txt /xchip/cga/gdac-prod/tcga-gdac/jobResults/ParadigmPrepare/OV-TP/2284630/0.ParadigmPrepare.Finished/jobs.sh /xchip/cga/gdac-prod/tcga-gdac/jobResults/ParadigmPrepare/OV-TP/2284630/0.ParadigmPrepare.Finished/templateEM.sh /xchip/cga/gdac-prod/tcga-gdac/jobResults/ParadigmPrepare/OV-TP/2284630/0.ParadigmPrepare.Finished/params0.txt
Started submitting scatter jobs at Thu Jan 10 20:54:37 2013
calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000001 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000001/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_36_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_36_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_49_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_49_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_49_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_49_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_61_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_61_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_61_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_61_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_41_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_41_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_7_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_7_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_7_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_7_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_79_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_79_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_79_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_79_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_124_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_124_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_14_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_14_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_14_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_14_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_100_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_100_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_100_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_100_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_93_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_93_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_93_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_93_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_86_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_86_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_86_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_86_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_46_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_46_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_46_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_46_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_123_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_123_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_80_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_80_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_80_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_80_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_15_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_15_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_39_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_39_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_89_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_89_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_89_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_89_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_127_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_127_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_127_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_127_b1_2_learned_parameters.fa -s 1,2

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000002 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000002/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_13_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_13_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_75_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_75_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b0_184_learned_parameters.fa -s 0,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b1_184_learned_parameters.fa -s 1,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b2_184_learned_parameters.fa -s 2,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b3_184_learned_parameters.fa -s 3,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b4_184_learned_parameters.fa -s 4,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b5_184_learned_parameters.fa -s 5,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b6_184_learned_parameters.fa -s 6,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b7_184_learned_parameters.fa -s 7,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b8_184_learned_parameters.fa -s 8,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b9_184_learned_parameters.fa -s 9,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b10_184_learned_parameters.fa -s 10,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b11_184_learned_parameters.fa -s 11,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b12_184_learned_parameters.fa -s 12,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b13_184_learned_parameters.fa -s 13,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b14_184_learned_parameters.fa -s 14,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b15_184_learned_parameters.fa -s 15,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b16_184_learned_parameters.fa -s 16,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b17_184_learned_parameters.fa -s 17,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b18_184_learned_parameters.fa -s 18,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b19_184_learned_parameters.fa -s 19,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b20_184_learned_parameters.fa -s 20,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b21_184_learned_parameters.fa -s 21,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b22_184_learned_parameters.fa -s 22,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b23_184_learned_parameters.fa -s 23,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b24_184_learned_parameters.fa -s 24,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b25_184_learned_parameters.fa -s 25,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b26_184_learned_parameters.fa -s 26,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b27_184_learned_parameters.fa -s 27,184

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000003 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000003/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b28_184_learned_parameters.fa -s 28,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b29_184_learned_parameters.fa -s 29,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b30_184_learned_parameters.fa -s 30,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b31_184_learned_parameters.fa -s 31,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b32_184_learned_parameters.fa -s 32,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b33_184_learned_parameters.fa -s 33,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b34_184_learned_parameters.fa -s 34,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b35_184_learned_parameters.fa -s 35,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b36_184_learned_parameters.fa -s 36,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b37_184_learned_parameters.fa -s 37,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b38_184_learned_parameters.fa -s 38,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b39_184_learned_parameters.fa -s 39,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b40_184_learned_parameters.fa -s 40,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b41_184_learned_parameters.fa -s 41,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b42_184_learned_parameters.fa -s 42,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b43_184_learned_parameters.fa -s 43,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b44_184_learned_parameters.fa -s 44,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b45_184_learned_parameters.fa -s 45,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b46_184_learned_parameters.fa -s 46,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b47_184_learned_parameters.fa -s 47,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b48_184_learned_parameters.fa -s 48,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b49_184_learned_parameters.fa -s 49,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b50_184_learned_parameters.fa -s 50,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b51_184_learned_parameters.fa -s 51,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b52_184_learned_parameters.fa -s 52,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b53_184_learned_parameters.fa -s 53,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b54_184_learned_parameters.fa -s 54,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b55_184_learned_parameters.fa -s 55,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b56_184_learned_parameters.fa -s 56,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b57_184_learned_parameters.fa -s 57,184

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000004 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000004/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b58_184_learned_parameters.fa -s 58,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b59_184_learned_parameters.fa -s 59,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b60_184_learned_parameters.fa -s 60,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b61_184_learned_parameters.fa -s 61,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b62_184_learned_parameters.fa -s 62,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b63_184_learned_parameters.fa -s 63,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b64_184_learned_parameters.fa -s 64,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b65_184_learned_parameters.fa -s 65,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b66_184_learned_parameters.fa -s 66,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b67_184_learned_parameters.fa -s 67,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b68_184_learned_parameters.fa -s 68,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b69_184_learned_parameters.fa -s 69,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b70_184_learned_parameters.fa -s 70,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b71_184_learned_parameters.fa -s 71,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b72_184_learned_parameters.fa -s 72,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b73_184_learned_parameters.fa -s 73,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b74_184_learned_parameters.fa -s 74,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b75_184_learned_parameters.fa -s 75,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b76_184_learned_parameters.fa -s 76,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b77_184_learned_parameters.fa -s 77,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b78_184_learned_parameters.fa -s 78,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b79_184_learned_parameters.fa -s 79,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b80_184_learned_parameters.fa -s 80,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b81_184_learned_parameters.fa -s 81,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b82_184_learned_parameters.fa -s 82,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b83_184_learned_parameters.fa -s 83,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b84_184_learned_parameters.fa -s 84,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b85_184_learned_parameters.fa -s 85,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b86_184_learned_parameters.fa -s 86,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b87_184_learned_parameters.fa -s 87,184

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000005 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000005/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b88_184_learned_parameters.fa -s 88,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b89_184_learned_parameters.fa -s 89,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b90_184_learned_parameters.fa -s 90,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b91_184_learned_parameters.fa -s 91,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b92_184_learned_parameters.fa -s 92,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b93_184_learned_parameters.fa -s 93,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b94_184_learned_parameters.fa -s 94,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b95_184_learned_parameters.fa -s 95,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b96_184_learned_parameters.fa -s 96,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b97_184_learned_parameters.fa -s 97,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b98_184_learned_parameters.fa -s 98,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b99_184_learned_parameters.fa -s 99,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b100_184_learned_parameters.fa -s 100,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b101_184_learned_parameters.fa -s 101,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b102_184_learned_parameters.fa -s 102,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b103_184_learned_parameters.fa -s 103,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b104_184_learned_parameters.fa -s 104,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b105_184_learned_parameters.fa -s 105,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b106_184_learned_parameters.fa -s 106,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b107_184_learned_parameters.fa -s 107,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b108_184_learned_parameters.fa -s 108,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b109_184_learned_parameters.fa -s 109,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b110_184_learned_parameters.fa -s 110,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b111_184_learned_parameters.fa -s 111,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b112_184_learned_parameters.fa -s 112,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b113_184_learned_parameters.fa -s 113,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b114_184_learned_parameters.fa -s 114,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b115_184_learned_parameters.fa -s 115,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b116_184_learned_parameters.fa -s 116,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b117_184_learned_parameters.fa -s 117,184

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000006 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000006/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b118_184_learned_parameters.fa -s 118,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b119_184_learned_parameters.fa -s 119,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b120_184_learned_parameters.fa -s 120,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b121_184_learned_parameters.fa -s 121,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b122_184_learned_parameters.fa -s 122,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b123_184_learned_parameters.fa -s 123,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b124_184_learned_parameters.fa -s 124,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b125_184_learned_parameters.fa -s 125,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b126_184_learned_parameters.fa -s 126,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b127_184_learned_parameters.fa -s 127,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b128_184_learned_parameters.fa -s 128,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b129_184_learned_parameters.fa -s 129,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b130_184_learned_parameters.fa -s 130,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b131_184_learned_parameters.fa -s 131,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b132_184_learned_parameters.fa -s 132,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b133_184_learned_parameters.fa -s 133,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b134_184_learned_parameters.fa -s 134,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b135_184_learned_parameters.fa -s 135,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b136_184_learned_parameters.fa -s 136,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b137_184_learned_parameters.fa -s 137,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b138_184_learned_parameters.fa -s 138,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b139_184_learned_parameters.fa -s 139,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b140_184_learned_parameters.fa -s 140,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b141_184_learned_parameters.fa -s 141,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b142_184_learned_parameters.fa -s 142,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b143_184_learned_parameters.fa -s 143,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b144_184_learned_parameters.fa -s 144,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b145_184_learned_parameters.fa -s 145,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b146_184_learned_parameters.fa -s 146,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b147_184_learned_parameters.fa -s 147,184

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000007 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000007/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b148_184_learned_parameters.fa -s 148,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b149_184_learned_parameters.fa -s 149,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b150_184_learned_parameters.fa -s 150,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b151_184_learned_parameters.fa -s 151,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b152_184_learned_parameters.fa -s 152,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b153_184_learned_parameters.fa -s 153,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b154_184_learned_parameters.fa -s 154,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b155_184_learned_parameters.fa -s 155,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b156_184_learned_parameters.fa -s 156,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b157_184_learned_parameters.fa -s 157,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b158_184_learned_parameters.fa -s 158,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b159_184_learned_parameters.fa -s 159,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b160_184_learned_parameters.fa -s 160,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b161_184_learned_parameters.fa -s 161,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b162_184_learned_parameters.fa -s 162,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b163_184_learned_parameters.fa -s 163,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b164_184_learned_parameters.fa -s 164,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b165_184_learned_parameters.fa -s 165,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b166_184_learned_parameters.fa -s 166,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b167_184_learned_parameters.fa -s 167,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b168_184_learned_parameters.fa -s 168,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b169_184_learned_parameters.fa -s 169,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b170_184_learned_parameters.fa -s 170,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b171_184_learned_parameters.fa -s 171,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b172_184_learned_parameters.fa -s 172,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b173_184_learned_parameters.fa -s 173,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b174_184_learned_parameters.fa -s 174,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b175_184_learned_parameters.fa -s 175,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b176_184_learned_parameters.fa -s 176,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b177_184_learned_parameters.fa -s 177,184

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000008 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000008/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b178_184_learned_parameters.fa -s 178,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b179_184_learned_parameters.fa -s 179,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b180_184_learned_parameters.fa -s 180,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b181_184_learned_parameters.fa -s 181,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b182_184_learned_parameters.fa -s 182,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_104_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_104_b183_184_learned_parameters.fa -s 183,184 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_82_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_82_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_82_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_82_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_119_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_119_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_119_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_119_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b0_39_learned_parameters.fa -s 0,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b1_39_learned_parameters.fa -s 1,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b2_39_learned_parameters.fa -s 2,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b3_39_learned_parameters.fa -s 3,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b4_39_learned_parameters.fa -s 4,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b5_39_learned_parameters.fa -s 5,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b6_39_learned_parameters.fa -s 6,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b7_39_learned_parameters.fa -s 7,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b8_39_learned_parameters.fa -s 8,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b9_39_learned_parameters.fa -s 9,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b10_39_learned_parameters.fa -s 10,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b11_39_learned_parameters.fa -s 11,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b12_39_learned_parameters.fa -s 12,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b13_39_learned_parameters.fa -s 13,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b14_39_learned_parameters.fa -s 14,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b15_39_learned_parameters.fa -s 15,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b16_39_learned_parameters.fa -s 16,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b17_39_learned_parameters.fa -s 17,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b18_39_learned_parameters.fa -s 18,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b19_39_learned_parameters.fa -s 19,39

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000009 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000009/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b20_39_learned_parameters.fa -s 20,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b21_39_learned_parameters.fa -s 21,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b22_39_learned_parameters.fa -s 22,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b23_39_learned_parameters.fa -s 23,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b24_39_learned_parameters.fa -s 24,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b25_39_learned_parameters.fa -s 25,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b26_39_learned_parameters.fa -s 26,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b27_39_learned_parameters.fa -s 27,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b28_39_learned_parameters.fa -s 28,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b29_39_learned_parameters.fa -s 29,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b30_39_learned_parameters.fa -s 30,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b31_39_learned_parameters.fa -s 31,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b32_39_learned_parameters.fa -s 32,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b33_39_learned_parameters.fa -s 33,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b34_39_learned_parameters.fa -s 34,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b35_39_learned_parameters.fa -s 35,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b36_39_learned_parameters.fa -s 36,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b37_39_learned_parameters.fa -s 37,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_32_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_32_b38_39_learned_parameters.fa -s 38,39 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_52_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_52_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_52_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_52_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_65_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_65_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_130_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_130_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_85_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_85_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_85_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_85_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_51_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_51_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_51_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_51_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_43_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_43_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_43_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_43_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_110_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_110_b0_2_learned_parameters.fa -s 0,2

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000010 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000010/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_110_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_110_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_50_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_50_b0_5_learned_parameters.fa -s 0,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_50_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_50_b1_5_learned_parameters.fa -s 1,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_50_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_50_b2_5_learned_parameters.fa -s 2,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_50_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_50_b3_5_learned_parameters.fa -s 3,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_50_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_50_b4_5_learned_parameters.fa -s 4,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_106_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_106_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_106_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_106_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_54_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_54_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_31_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_31_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_31_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_31_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_74_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_74_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_74_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_74_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_72_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_72_b0_5_learned_parameters.fa -s 0,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_72_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_72_b1_5_learned_parameters.fa -s 1,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_72_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_72_b2_5_learned_parameters.fa -s 2,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_72_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_72_b3_5_learned_parameters.fa -s 3,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_72_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_72_b4_5_learned_parameters.fa -s 4,5 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_18_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_18_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_37_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_37_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_33_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_33_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_33_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_33_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_122_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_122_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_122_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_122_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_26_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_26_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_26_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_26_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_64_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_64_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_64_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_64_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_66_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_66_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_66_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_66_b1_2_learned_parameters.fa -s 1,2

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000011 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000011/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_47_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_47_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_25_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_25_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_73_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_73_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_67_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_67_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_76_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_76_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_76_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_76_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_11_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_11_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_71_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_71_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_71_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_71_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b0_13_learned_parameters.fa -s 0,13 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b1_13_learned_parameters.fa -s 1,13 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b2_13_learned_parameters.fa -s 2,13 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b3_13_learned_parameters.fa -s 3,13 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b4_13_learned_parameters.fa -s 4,13 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b5_13_learned_parameters.fa -s 5,13 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b6_13_learned_parameters.fa -s 6,13 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b7_13_learned_parameters.fa -s 7,13 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b8_13_learned_parameters.fa -s 8,13 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b9_13_learned_parameters.fa -s 9,13 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b10_13_learned_parameters.fa -s 10,13 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b11_13_learned_parameters.fa -s 11,13 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_63_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_63_b12_13_learned_parameters.fa -s 12,13 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_114_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_114_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_114_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_114_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_53_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_53_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_38_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_38_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b0_197_learned_parameters.fa -s 0,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b1_197_learned_parameters.fa -s 1,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b2_197_learned_parameters.fa -s 2,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b3_197_learned_parameters.fa -s 3,197

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000012 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000012/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b4_197_learned_parameters.fa -s 4,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b5_197_learned_parameters.fa -s 5,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b6_197_learned_parameters.fa -s 6,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b7_197_learned_parameters.fa -s 7,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b8_197_learned_parameters.fa -s 8,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b9_197_learned_parameters.fa -s 9,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b10_197_learned_parameters.fa -s 10,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b11_197_learned_parameters.fa -s 11,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b12_197_learned_parameters.fa -s 12,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b13_197_learned_parameters.fa -s 13,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b14_197_learned_parameters.fa -s 14,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b15_197_learned_parameters.fa -s 15,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b16_197_learned_parameters.fa -s 16,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b17_197_learned_parameters.fa -s 17,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b18_197_learned_parameters.fa -s 18,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b19_197_learned_parameters.fa -s 19,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b20_197_learned_parameters.fa -s 20,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b21_197_learned_parameters.fa -s 21,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b22_197_learned_parameters.fa -s 22,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b23_197_learned_parameters.fa -s 23,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b24_197_learned_parameters.fa -s 24,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b25_197_learned_parameters.fa -s 25,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b26_197_learned_parameters.fa -s 26,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b27_197_learned_parameters.fa -s 27,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b28_197_learned_parameters.fa -s 28,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b29_197_learned_parameters.fa -s 29,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b30_197_learned_parameters.fa -s 30,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b31_197_learned_parameters.fa -s 31,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b32_197_learned_parameters.fa -s 32,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b33_197_learned_parameters.fa -s 33,197

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000013 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000013/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b34_197_learned_parameters.fa -s 34,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b35_197_learned_parameters.fa -s 35,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b36_197_learned_parameters.fa -s 36,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b37_197_learned_parameters.fa -s 37,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b38_197_learned_parameters.fa -s 38,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b39_197_learned_parameters.fa -s 39,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b40_197_learned_parameters.fa -s 40,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b41_197_learned_parameters.fa -s 41,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b42_197_learned_parameters.fa -s 42,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b43_197_learned_parameters.fa -s 43,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b44_197_learned_parameters.fa -s 44,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b45_197_learned_parameters.fa -s 45,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b46_197_learned_parameters.fa -s 46,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b47_197_learned_parameters.fa -s 47,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b48_197_learned_parameters.fa -s 48,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b49_197_learned_parameters.fa -s 49,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b50_197_learned_parameters.fa -s 50,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b51_197_learned_parameters.fa -s 51,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b52_197_learned_parameters.fa -s 52,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b53_197_learned_parameters.fa -s 53,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b54_197_learned_parameters.fa -s 54,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b55_197_learned_parameters.fa -s 55,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b56_197_learned_parameters.fa -s 56,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b57_197_learned_parameters.fa -s 57,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b58_197_learned_parameters.fa -s 58,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b59_197_learned_parameters.fa -s 59,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b60_197_learned_parameters.fa -s 60,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b61_197_learned_parameters.fa -s 61,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b62_197_learned_parameters.fa -s 62,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b63_197_learned_parameters.fa -s 63,197

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000014 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000014/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b64_197_learned_parameters.fa -s 64,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b65_197_learned_parameters.fa -s 65,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b66_197_learned_parameters.fa -s 66,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b67_197_learned_parameters.fa -s 67,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b68_197_learned_parameters.fa -s 68,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b69_197_learned_parameters.fa -s 69,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b70_197_learned_parameters.fa -s 70,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b71_197_learned_parameters.fa -s 71,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b72_197_learned_parameters.fa -s 72,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b73_197_learned_parameters.fa -s 73,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b74_197_learned_parameters.fa -s 74,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b75_197_learned_parameters.fa -s 75,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b76_197_learned_parameters.fa -s 76,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b77_197_learned_parameters.fa -s 77,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b78_197_learned_parameters.fa -s 78,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b79_197_learned_parameters.fa -s 79,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b80_197_learned_parameters.fa -s 80,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b81_197_learned_parameters.fa -s 81,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b82_197_learned_parameters.fa -s 82,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b83_197_learned_parameters.fa -s 83,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b84_197_learned_parameters.fa -s 84,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b85_197_learned_parameters.fa -s 85,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b86_197_learned_parameters.fa -s 86,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b87_197_learned_parameters.fa -s 87,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b88_197_learned_parameters.fa -s 88,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b89_197_learned_parameters.fa -s 89,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b90_197_learned_parameters.fa -s 90,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b91_197_learned_parameters.fa -s 91,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b92_197_learned_parameters.fa -s 92,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b93_197_learned_parameters.fa -s 93,197

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000015 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000015/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b94_197_learned_parameters.fa -s 94,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b95_197_learned_parameters.fa -s 95,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b96_197_learned_parameters.fa -s 96,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b97_197_learned_parameters.fa -s 97,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b98_197_learned_parameters.fa -s 98,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b99_197_learned_parameters.fa -s 99,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b100_197_learned_parameters.fa -s 100,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b101_197_learned_parameters.fa -s 101,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b102_197_learned_parameters.fa -s 102,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b103_197_learned_parameters.fa -s 103,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b104_197_learned_parameters.fa -s 104,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b105_197_learned_parameters.fa -s 105,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b106_197_learned_parameters.fa -s 106,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b107_197_learned_parameters.fa -s 107,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b108_197_learned_parameters.fa -s 108,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b109_197_learned_parameters.fa -s 109,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b110_197_learned_parameters.fa -s 110,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b111_197_learned_parameters.fa -s 111,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b112_197_learned_parameters.fa -s 112,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b113_197_learned_parameters.fa -s 113,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b114_197_learned_parameters.fa -s 114,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b115_197_learned_parameters.fa -s 115,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b116_197_learned_parameters.fa -s 116,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b117_197_learned_parameters.fa -s 117,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b118_197_learned_parameters.fa -s 118,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b119_197_learned_parameters.fa -s 119,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b120_197_learned_parameters.fa -s 120,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b121_197_learned_parameters.fa -s 121,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b122_197_learned_parameters.fa -s 122,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b123_197_learned_parameters.fa -s 123,197

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000016 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000016/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b124_197_learned_parameters.fa -s 124,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b125_197_learned_parameters.fa -s 125,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b126_197_learned_parameters.fa -s 126,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b127_197_learned_parameters.fa -s 127,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b128_197_learned_parameters.fa -s 128,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b129_197_learned_parameters.fa -s 129,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b130_197_learned_parameters.fa -s 130,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b131_197_learned_parameters.fa -s 131,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b132_197_learned_parameters.fa -s 132,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b133_197_learned_parameters.fa -s 133,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b134_197_learned_parameters.fa -s 134,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b135_197_learned_parameters.fa -s 135,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b136_197_learned_parameters.fa -s 136,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b137_197_learned_parameters.fa -s 137,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b138_197_learned_parameters.fa -s 138,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b139_197_learned_parameters.fa -s 139,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b140_197_learned_parameters.fa -s 140,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b141_197_learned_parameters.fa -s 141,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b142_197_learned_parameters.fa -s 142,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b143_197_learned_parameters.fa -s 143,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b144_197_learned_parameters.fa -s 144,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b145_197_learned_parameters.fa -s 145,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b146_197_learned_parameters.fa -s 146,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b147_197_learned_parameters.fa -s 147,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b148_197_learned_parameters.fa -s 148,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b149_197_learned_parameters.fa -s 149,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b150_197_learned_parameters.fa -s 150,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b151_197_learned_parameters.fa -s 151,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b152_197_learned_parameters.fa -s 152,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b153_197_learned_parameters.fa -s 153,197

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000017 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000017/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b154_197_learned_parameters.fa -s 154,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b155_197_learned_parameters.fa -s 155,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b156_197_learned_parameters.fa -s 156,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b157_197_learned_parameters.fa -s 157,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b158_197_learned_parameters.fa -s 158,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b159_197_learned_parameters.fa -s 159,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b160_197_learned_parameters.fa -s 160,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b161_197_learned_parameters.fa -s 161,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b162_197_learned_parameters.fa -s 162,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b163_197_learned_parameters.fa -s 163,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b164_197_learned_parameters.fa -s 164,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b165_197_learned_parameters.fa -s 165,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b166_197_learned_parameters.fa -s 166,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b167_197_learned_parameters.fa -s 167,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b168_197_learned_parameters.fa -s 168,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b169_197_learned_parameters.fa -s 169,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b170_197_learned_parameters.fa -s 170,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b171_197_learned_parameters.fa -s 171,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b172_197_learned_parameters.fa -s 172,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b173_197_learned_parameters.fa -s 173,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b174_197_learned_parameters.fa -s 174,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b175_197_learned_parameters.fa -s 175,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b176_197_learned_parameters.fa -s 176,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b177_197_learned_parameters.fa -s 177,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b178_197_learned_parameters.fa -s 178,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b179_197_learned_parameters.fa -s 179,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b180_197_learned_parameters.fa -s 180,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b181_197_learned_parameters.fa -s 181,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b182_197_learned_parameters.fa -s 182,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b183_197_learned_parameters.fa -s 183,197

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000018 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000018/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b184_197_learned_parameters.fa -s 184,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b185_197_learned_parameters.fa -s 185,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b186_197_learned_parameters.fa -s 186,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b187_197_learned_parameters.fa -s 187,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b188_197_learned_parameters.fa -s 188,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b189_197_learned_parameters.fa -s 189,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b190_197_learned_parameters.fa -s 190,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b191_197_learned_parameters.fa -s 191,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b192_197_learned_parameters.fa -s 192,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b193_197_learned_parameters.fa -s 193,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b194_197_learned_parameters.fa -s 194,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b195_197_learned_parameters.fa -s 195,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_42_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_42_b196_197_learned_parameters.fa -s 196,197 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_134_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_134_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_94_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_94_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_94_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_94_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_44_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_44_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_44_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_44_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_111_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_111_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_115_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_115_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_12_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_12_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_12_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_12_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b0_465_learned_parameters.fa -s 0,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b1_465_learned_parameters.fa -s 1,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b2_465_learned_parameters.fa -s 2,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b3_465_learned_parameters.fa -s 3,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b4_465_learned_parameters.fa -s 4,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b5_465_learned_parameters.fa -s 5,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b6_465_learned_parameters.fa -s 6,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b7_465_learned_parameters.fa -s 7,465

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000019 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000019/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b8_465_learned_parameters.fa -s 8,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b9_465_learned_parameters.fa -s 9,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b10_465_learned_parameters.fa -s 10,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b11_465_learned_parameters.fa -s 11,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b12_465_learned_parameters.fa -s 12,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b13_465_learned_parameters.fa -s 13,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b14_465_learned_parameters.fa -s 14,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b15_465_learned_parameters.fa -s 15,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b16_465_learned_parameters.fa -s 16,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b17_465_learned_parameters.fa -s 17,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b18_465_learned_parameters.fa -s 18,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b19_465_learned_parameters.fa -s 19,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b20_465_learned_parameters.fa -s 20,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b21_465_learned_parameters.fa -s 21,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b22_465_learned_parameters.fa -s 22,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b23_465_learned_parameters.fa -s 23,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b24_465_learned_parameters.fa -s 24,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b25_465_learned_parameters.fa -s 25,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b26_465_learned_parameters.fa -s 26,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b27_465_learned_parameters.fa -s 27,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b28_465_learned_parameters.fa -s 28,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b29_465_learned_parameters.fa -s 29,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b30_465_learned_parameters.fa -s 30,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b31_465_learned_parameters.fa -s 31,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b32_465_learned_parameters.fa -s 32,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b33_465_learned_parameters.fa -s 33,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b34_465_learned_parameters.fa -s 34,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b35_465_learned_parameters.fa -s 35,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b36_465_learned_parameters.fa -s 36,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b37_465_learned_parameters.fa -s 37,465

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000020 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000020/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b38_465_learned_parameters.fa -s 38,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b39_465_learned_parameters.fa -s 39,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b40_465_learned_parameters.fa -s 40,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b41_465_learned_parameters.fa -s 41,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b42_465_learned_parameters.fa -s 42,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b43_465_learned_parameters.fa -s 43,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b44_465_learned_parameters.fa -s 44,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b45_465_learned_parameters.fa -s 45,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b46_465_learned_parameters.fa -s 46,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b47_465_learned_parameters.fa -s 47,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b48_465_learned_parameters.fa -s 48,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b49_465_learned_parameters.fa -s 49,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b50_465_learned_parameters.fa -s 50,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b51_465_learned_parameters.fa -s 51,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b52_465_learned_parameters.fa -s 52,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b53_465_learned_parameters.fa -s 53,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b54_465_learned_parameters.fa -s 54,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b55_465_learned_parameters.fa -s 55,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b56_465_learned_parameters.fa -s 56,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b57_465_learned_parameters.fa -s 57,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b58_465_learned_parameters.fa -s 58,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b59_465_learned_parameters.fa -s 59,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b60_465_learned_parameters.fa -s 60,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b61_465_learned_parameters.fa -s 61,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b62_465_learned_parameters.fa -s 62,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b63_465_learned_parameters.fa -s 63,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b64_465_learned_parameters.fa -s 64,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b65_465_learned_parameters.fa -s 65,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b66_465_learned_parameters.fa -s 66,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b67_465_learned_parameters.fa -s 67,465

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000021 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000021/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b68_465_learned_parameters.fa -s 68,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b69_465_learned_parameters.fa -s 69,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b70_465_learned_parameters.fa -s 70,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b71_465_learned_parameters.fa -s 71,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b72_465_learned_parameters.fa -s 72,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b73_465_learned_parameters.fa -s 73,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b74_465_learned_parameters.fa -s 74,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b75_465_learned_parameters.fa -s 75,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b76_465_learned_parameters.fa -s 76,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b77_465_learned_parameters.fa -s 77,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b78_465_learned_parameters.fa -s 78,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b79_465_learned_parameters.fa -s 79,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b80_465_learned_parameters.fa -s 80,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b81_465_learned_parameters.fa -s 81,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b82_465_learned_parameters.fa -s 82,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b83_465_learned_parameters.fa -s 83,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b84_465_learned_parameters.fa -s 84,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b85_465_learned_parameters.fa -s 85,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b86_465_learned_parameters.fa -s 86,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b87_465_learned_parameters.fa -s 87,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b88_465_learned_parameters.fa -s 88,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b89_465_learned_parameters.fa -s 89,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b90_465_learned_parameters.fa -s 90,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b91_465_learned_parameters.fa -s 91,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b92_465_learned_parameters.fa -s 92,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b93_465_learned_parameters.fa -s 93,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b94_465_learned_parameters.fa -s 94,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b95_465_learned_parameters.fa -s 95,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b96_465_learned_parameters.fa -s 96,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b97_465_learned_parameters.fa -s 97,465

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000022 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000022/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b98_465_learned_parameters.fa -s 98,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b99_465_learned_parameters.fa -s 99,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b100_465_learned_parameters.fa -s 100,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b101_465_learned_parameters.fa -s 101,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b102_465_learned_parameters.fa -s 102,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b103_465_learned_parameters.fa -s 103,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b104_465_learned_parameters.fa -s 104,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b105_465_learned_parameters.fa -s 105,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b106_465_learned_parameters.fa -s 106,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b107_465_learned_parameters.fa -s 107,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b108_465_learned_parameters.fa -s 108,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b109_465_learned_parameters.fa -s 109,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b110_465_learned_parameters.fa -s 110,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b111_465_learned_parameters.fa -s 111,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b112_465_learned_parameters.fa -s 112,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b113_465_learned_parameters.fa -s 113,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b114_465_learned_parameters.fa -s 114,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b115_465_learned_parameters.fa -s 115,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b116_465_learned_parameters.fa -s 116,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b117_465_learned_parameters.fa -s 117,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b118_465_learned_parameters.fa -s 118,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b119_465_learned_parameters.fa -s 119,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b120_465_learned_parameters.fa -s 120,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b121_465_learned_parameters.fa -s 121,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b122_465_learned_parameters.fa -s 122,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b123_465_learned_parameters.fa -s 123,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b124_465_learned_parameters.fa -s 124,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b125_465_learned_parameters.fa -s 125,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b126_465_learned_parameters.fa -s 126,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b127_465_learned_parameters.fa -s 127,465

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000023 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000023/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b128_465_learned_parameters.fa -s 128,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b129_465_learned_parameters.fa -s 129,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b130_465_learned_parameters.fa -s 130,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b131_465_learned_parameters.fa -s 131,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b132_465_learned_parameters.fa -s 132,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b133_465_learned_parameters.fa -s 133,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b134_465_learned_parameters.fa -s 134,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b135_465_learned_parameters.fa -s 135,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b136_465_learned_parameters.fa -s 136,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b137_465_learned_parameters.fa -s 137,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b138_465_learned_parameters.fa -s 138,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b139_465_learned_parameters.fa -s 139,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b140_465_learned_parameters.fa -s 140,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b141_465_learned_parameters.fa -s 141,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b142_465_learned_parameters.fa -s 142,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b143_465_learned_parameters.fa -s 143,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b144_465_learned_parameters.fa -s 144,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b145_465_learned_parameters.fa -s 145,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b146_465_learned_parameters.fa -s 146,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b147_465_learned_parameters.fa -s 147,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b148_465_learned_parameters.fa -s 148,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b149_465_learned_parameters.fa -s 149,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b150_465_learned_parameters.fa -s 150,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b151_465_learned_parameters.fa -s 151,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b152_465_learned_parameters.fa -s 152,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b153_465_learned_parameters.fa -s 153,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b154_465_learned_parameters.fa -s 154,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b155_465_learned_parameters.fa -s 155,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b156_465_learned_parameters.fa -s 156,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b157_465_learned_parameters.fa -s 157,465

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000024 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000024/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b158_465_learned_parameters.fa -s 158,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b159_465_learned_parameters.fa -s 159,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b160_465_learned_parameters.fa -s 160,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b161_465_learned_parameters.fa -s 161,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b162_465_learned_parameters.fa -s 162,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b163_465_learned_parameters.fa -s 163,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b164_465_learned_parameters.fa -s 164,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b165_465_learned_parameters.fa -s 165,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b166_465_learned_parameters.fa -s 166,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b167_465_learned_parameters.fa -s 167,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b168_465_learned_parameters.fa -s 168,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b169_465_learned_parameters.fa -s 169,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b170_465_learned_parameters.fa -s 170,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b171_465_learned_parameters.fa -s 171,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b172_465_learned_parameters.fa -s 172,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b173_465_learned_parameters.fa -s 173,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b174_465_learned_parameters.fa -s 174,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b175_465_learned_parameters.fa -s 175,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b176_465_learned_parameters.fa -s 176,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b177_465_learned_parameters.fa -s 177,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b178_465_learned_parameters.fa -s 178,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b179_465_learned_parameters.fa -s 179,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b180_465_learned_parameters.fa -s 180,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b181_465_learned_parameters.fa -s 181,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b182_465_learned_parameters.fa -s 182,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b183_465_learned_parameters.fa -s 183,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b184_465_learned_parameters.fa -s 184,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b185_465_learned_parameters.fa -s 185,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b186_465_learned_parameters.fa -s 186,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b187_465_learned_parameters.fa -s 187,465

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000025 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000025/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b188_465_learned_parameters.fa -s 188,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b189_465_learned_parameters.fa -s 189,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b190_465_learned_parameters.fa -s 190,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b191_465_learned_parameters.fa -s 191,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b192_465_learned_parameters.fa -s 192,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b193_465_learned_parameters.fa -s 193,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b194_465_learned_parameters.fa -s 194,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b195_465_learned_parameters.fa -s 195,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b196_465_learned_parameters.fa -s 196,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b197_465_learned_parameters.fa -s 197,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b198_465_learned_parameters.fa -s 198,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b199_465_learned_parameters.fa -s 199,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b200_465_learned_parameters.fa -s 200,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b201_465_learned_parameters.fa -s 201,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b202_465_learned_parameters.fa -s 202,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b203_465_learned_parameters.fa -s 203,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b204_465_learned_parameters.fa -s 204,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b205_465_learned_parameters.fa -s 205,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b206_465_learned_parameters.fa -s 206,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b207_465_learned_parameters.fa -s 207,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b208_465_learned_parameters.fa -s 208,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b209_465_learned_parameters.fa -s 209,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b210_465_learned_parameters.fa -s 210,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b211_465_learned_parameters.fa -s 211,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b212_465_learned_parameters.fa -s 212,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b213_465_learned_parameters.fa -s 213,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b214_465_learned_parameters.fa -s 214,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b215_465_learned_parameters.fa -s 215,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b216_465_learned_parameters.fa -s 216,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b217_465_learned_parameters.fa -s 217,465

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000026 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000026/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b218_465_learned_parameters.fa -s 218,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b219_465_learned_parameters.fa -s 219,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b220_465_learned_parameters.fa -s 220,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b221_465_learned_parameters.fa -s 221,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b222_465_learned_parameters.fa -s 222,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b223_465_learned_parameters.fa -s 223,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b224_465_learned_parameters.fa -s 224,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b225_465_learned_parameters.fa -s 225,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b226_465_learned_parameters.fa -s 226,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b227_465_learned_parameters.fa -s 227,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b228_465_learned_parameters.fa -s 228,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b229_465_learned_parameters.fa -s 229,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b230_465_learned_parameters.fa -s 230,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b231_465_learned_parameters.fa -s 231,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b232_465_learned_parameters.fa -s 232,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b233_465_learned_parameters.fa -s 233,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b234_465_learned_parameters.fa -s 234,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b235_465_learned_parameters.fa -s 235,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b236_465_learned_parameters.fa -s 236,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b237_465_learned_parameters.fa -s 237,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b238_465_learned_parameters.fa -s 238,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b239_465_learned_parameters.fa -s 239,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b240_465_learned_parameters.fa -s 240,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b241_465_learned_parameters.fa -s 241,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b242_465_learned_parameters.fa -s 242,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b243_465_learned_parameters.fa -s 243,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b244_465_learned_parameters.fa -s 244,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b245_465_learned_parameters.fa -s 245,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b246_465_learned_parameters.fa -s 246,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b247_465_learned_parameters.fa -s 247,465

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000027 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000027/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b248_465_learned_parameters.fa -s 248,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b249_465_learned_parameters.fa -s 249,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b250_465_learned_parameters.fa -s 250,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b251_465_learned_parameters.fa -s 251,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b252_465_learned_parameters.fa -s 252,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b253_465_learned_parameters.fa -s 253,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b254_465_learned_parameters.fa -s 254,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b255_465_learned_parameters.fa -s 255,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b256_465_learned_parameters.fa -s 256,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b257_465_learned_parameters.fa -s 257,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b258_465_learned_parameters.fa -s 258,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b259_465_learned_parameters.fa -s 259,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b260_465_learned_parameters.fa -s 260,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b261_465_learned_parameters.fa -s 261,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b262_465_learned_parameters.fa -s 262,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b263_465_learned_parameters.fa -s 263,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b264_465_learned_parameters.fa -s 264,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b265_465_learned_parameters.fa -s 265,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b266_465_learned_parameters.fa -s 266,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b267_465_learned_parameters.fa -s 267,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b268_465_learned_parameters.fa -s 268,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b269_465_learned_parameters.fa -s 269,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b270_465_learned_parameters.fa -s 270,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b271_465_learned_parameters.fa -s 271,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b272_465_learned_parameters.fa -s 272,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b273_465_learned_parameters.fa -s 273,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b274_465_learned_parameters.fa -s 274,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b275_465_learned_parameters.fa -s 275,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b276_465_learned_parameters.fa -s 276,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b277_465_learned_parameters.fa -s 277,465

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000028 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000028/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b278_465_learned_parameters.fa -s 278,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b279_465_learned_parameters.fa -s 279,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b280_465_learned_parameters.fa -s 280,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b281_465_learned_parameters.fa -s 281,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b282_465_learned_parameters.fa -s 282,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b283_465_learned_parameters.fa -s 283,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b284_465_learned_parameters.fa -s 284,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b285_465_learned_parameters.fa -s 285,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b286_465_learned_parameters.fa -s 286,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b287_465_learned_parameters.fa -s 287,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b288_465_learned_parameters.fa -s 288,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b289_465_learned_parameters.fa -s 289,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b290_465_learned_parameters.fa -s 290,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b291_465_learned_parameters.fa -s 291,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b292_465_learned_parameters.fa -s 292,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b293_465_learned_parameters.fa -s 293,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b294_465_learned_parameters.fa -s 294,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b295_465_learned_parameters.fa -s 295,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b296_465_learned_parameters.fa -s 296,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b297_465_learned_parameters.fa -s 297,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b298_465_learned_parameters.fa -s 298,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b299_465_learned_parameters.fa -s 299,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b300_465_learned_parameters.fa -s 300,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b301_465_learned_parameters.fa -s 301,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b302_465_learned_parameters.fa -s 302,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b303_465_learned_parameters.fa -s 303,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b304_465_learned_parameters.fa -s 304,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b305_465_learned_parameters.fa -s 305,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b306_465_learned_parameters.fa -s 306,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b307_465_learned_parameters.fa -s 307,465

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000029 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000029/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b308_465_learned_parameters.fa -s 308,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b309_465_learned_parameters.fa -s 309,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b310_465_learned_parameters.fa -s 310,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b311_465_learned_parameters.fa -s 311,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b312_465_learned_parameters.fa -s 312,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b313_465_learned_parameters.fa -s 313,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b314_465_learned_parameters.fa -s 314,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b315_465_learned_parameters.fa -s 315,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b316_465_learned_parameters.fa -s 316,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b317_465_learned_parameters.fa -s 317,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b318_465_learned_parameters.fa -s 318,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b319_465_learned_parameters.fa -s 319,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b320_465_learned_parameters.fa -s 320,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b321_465_learned_parameters.fa -s 321,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b322_465_learned_parameters.fa -s 322,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b323_465_learned_parameters.fa -s 323,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b324_465_learned_parameters.fa -s 324,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b325_465_learned_parameters.fa -s 325,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b326_465_learned_parameters.fa -s 326,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b327_465_learned_parameters.fa -s 327,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b328_465_learned_parameters.fa -s 328,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b329_465_learned_parameters.fa -s 329,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b330_465_learned_parameters.fa -s 330,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b331_465_learned_parameters.fa -s 331,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b332_465_learned_parameters.fa -s 332,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b333_465_learned_parameters.fa -s 333,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b334_465_learned_parameters.fa -s 334,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b335_465_learned_parameters.fa -s 335,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b336_465_learned_parameters.fa -s 336,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b337_465_learned_parameters.fa -s 337,465

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000030 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000030/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b338_465_learned_parameters.fa -s 338,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b339_465_learned_parameters.fa -s 339,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b340_465_learned_parameters.fa -s 340,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b341_465_learned_parameters.fa -s 341,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b342_465_learned_parameters.fa -s 342,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b343_465_learned_parameters.fa -s 343,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b344_465_learned_parameters.fa -s 344,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b345_465_learned_parameters.fa -s 345,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b346_465_learned_parameters.fa -s 346,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b347_465_learned_parameters.fa -s 347,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b348_465_learned_parameters.fa -s 348,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b349_465_learned_parameters.fa -s 349,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b350_465_learned_parameters.fa -s 350,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b351_465_learned_parameters.fa -s 351,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b352_465_learned_parameters.fa -s 352,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b353_465_learned_parameters.fa -s 353,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b354_465_learned_parameters.fa -s 354,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b355_465_learned_parameters.fa -s 355,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b356_465_learned_parameters.fa -s 356,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b357_465_learned_parameters.fa -s 357,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b358_465_learned_parameters.fa -s 358,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b359_465_learned_parameters.fa -s 359,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b360_465_learned_parameters.fa -s 360,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b361_465_learned_parameters.fa -s 361,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b362_465_learned_parameters.fa -s 362,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b363_465_learned_parameters.fa -s 363,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b364_465_learned_parameters.fa -s 364,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b365_465_learned_parameters.fa -s 365,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b366_465_learned_parameters.fa -s 366,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b367_465_learned_parameters.fa -s 367,465

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000031 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000031/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b368_465_learned_parameters.fa -s 368,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b369_465_learned_parameters.fa -s 369,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b370_465_learned_parameters.fa -s 370,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b371_465_learned_parameters.fa -s 371,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b372_465_learned_parameters.fa -s 372,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b373_465_learned_parameters.fa -s 373,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b374_465_learned_parameters.fa -s 374,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b375_465_learned_parameters.fa -s 375,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b376_465_learned_parameters.fa -s 376,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b377_465_learned_parameters.fa -s 377,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b378_465_learned_parameters.fa -s 378,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b379_465_learned_parameters.fa -s 379,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b380_465_learned_parameters.fa -s 380,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b381_465_learned_parameters.fa -s 381,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b382_465_learned_parameters.fa -s 382,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b383_465_learned_parameters.fa -s 383,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b384_465_learned_parameters.fa -s 384,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b385_465_learned_parameters.fa -s 385,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b386_465_learned_parameters.fa -s 386,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b387_465_learned_parameters.fa -s 387,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b388_465_learned_parameters.fa -s 388,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b389_465_learned_parameters.fa -s 389,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b390_465_learned_parameters.fa -s 390,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b391_465_learned_parameters.fa -s 391,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b392_465_learned_parameters.fa -s 392,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b393_465_learned_parameters.fa -s 393,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b394_465_learned_parameters.fa -s 394,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b395_465_learned_parameters.fa -s 395,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b396_465_learned_parameters.fa -s 396,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b397_465_learned_parameters.fa -s 397,465

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000032 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000032/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b398_465_learned_parameters.fa -s 398,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b399_465_learned_parameters.fa -s 399,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b400_465_learned_parameters.fa -s 400,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b401_465_learned_parameters.fa -s 401,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b402_465_learned_parameters.fa -s 402,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b403_465_learned_parameters.fa -s 403,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b404_465_learned_parameters.fa -s 404,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b405_465_learned_parameters.fa -s 405,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b406_465_learned_parameters.fa -s 406,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b407_465_learned_parameters.fa -s 407,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b408_465_learned_parameters.fa -s 408,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b409_465_learned_parameters.fa -s 409,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b410_465_learned_parameters.fa -s 410,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b411_465_learned_parameters.fa -s 411,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b412_465_learned_parameters.fa -s 412,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b413_465_learned_parameters.fa -s 413,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b414_465_learned_parameters.fa -s 414,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b415_465_learned_parameters.fa -s 415,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b416_465_learned_parameters.fa -s 416,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b417_465_learned_parameters.fa -s 417,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b418_465_learned_parameters.fa -s 418,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b419_465_learned_parameters.fa -s 419,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b420_465_learned_parameters.fa -s 420,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b421_465_learned_parameters.fa -s 421,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b422_465_learned_parameters.fa -s 422,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b423_465_learned_parameters.fa -s 423,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b424_465_learned_parameters.fa -s 424,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b425_465_learned_parameters.fa -s 425,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b426_465_learned_parameters.fa -s 426,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b427_465_learned_parameters.fa -s 427,465

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000033 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000033/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b428_465_learned_parameters.fa -s 428,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b429_465_learned_parameters.fa -s 429,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b430_465_learned_parameters.fa -s 430,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b431_465_learned_parameters.fa -s 431,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b432_465_learned_parameters.fa -s 432,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b433_465_learned_parameters.fa -s 433,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b434_465_learned_parameters.fa -s 434,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b435_465_learned_parameters.fa -s 435,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b436_465_learned_parameters.fa -s 436,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b437_465_learned_parameters.fa -s 437,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b438_465_learned_parameters.fa -s 438,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b439_465_learned_parameters.fa -s 439,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b440_465_learned_parameters.fa -s 440,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b441_465_learned_parameters.fa -s 441,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b442_465_learned_parameters.fa -s 442,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b443_465_learned_parameters.fa -s 443,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b444_465_learned_parameters.fa -s 444,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b445_465_learned_parameters.fa -s 445,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b446_465_learned_parameters.fa -s 446,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b447_465_learned_parameters.fa -s 447,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b448_465_learned_parameters.fa -s 448,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b449_465_learned_parameters.fa -s 449,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b450_465_learned_parameters.fa -s 450,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b451_465_learned_parameters.fa -s 451,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b452_465_learned_parameters.fa -s 452,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b453_465_learned_parameters.fa -s 453,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b454_465_learned_parameters.fa -s 454,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b455_465_learned_parameters.fa -s 455,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b456_465_learned_parameters.fa -s 456,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b457_465_learned_parameters.fa -s 457,465

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000034 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000034/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b458_465_learned_parameters.fa -s 458,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b459_465_learned_parameters.fa -s 459,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b460_465_learned_parameters.fa -s 460,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b461_465_learned_parameters.fa -s 461,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b462_465_learned_parameters.fa -s 462,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b463_465_learned_parameters.fa -s 463,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_58_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_58_b464_465_learned_parameters.fa -s 464,465 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_118_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_118_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_118_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_118_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_48_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_48_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_40_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_40_b0_3_learned_parameters.fa -s 0,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_40_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_40_b1_3_learned_parameters.fa -s 1,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_40_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_40_b2_3_learned_parameters.fa -s 2,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_116_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_116_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_116_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_116_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_113_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_113_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_113_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_113_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_84_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_84_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_84_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_84_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b0_79_learned_parameters.fa -s 0,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b1_79_learned_parameters.fa -s 1,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b2_79_learned_parameters.fa -s 2,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b3_79_learned_parameters.fa -s 3,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b4_79_learned_parameters.fa -s 4,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b5_79_learned_parameters.fa -s 5,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b6_79_learned_parameters.fa -s 6,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b7_79_learned_parameters.fa -s 7,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b8_79_learned_parameters.fa -s 8,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b9_79_learned_parameters.fa -s 9,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b10_79_learned_parameters.fa -s 10,79

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000035 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000035/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b11_79_learned_parameters.fa -s 11,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b12_79_learned_parameters.fa -s 12,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b13_79_learned_parameters.fa -s 13,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b14_79_learned_parameters.fa -s 14,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b15_79_learned_parameters.fa -s 15,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b16_79_learned_parameters.fa -s 16,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b17_79_learned_parameters.fa -s 17,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b18_79_learned_parameters.fa -s 18,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b19_79_learned_parameters.fa -s 19,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b20_79_learned_parameters.fa -s 20,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b21_79_learned_parameters.fa -s 21,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b22_79_learned_parameters.fa -s 22,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b23_79_learned_parameters.fa -s 23,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b24_79_learned_parameters.fa -s 24,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b25_79_learned_parameters.fa -s 25,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b26_79_learned_parameters.fa -s 26,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b27_79_learned_parameters.fa -s 27,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b28_79_learned_parameters.fa -s 28,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b29_79_learned_parameters.fa -s 29,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b30_79_learned_parameters.fa -s 30,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b31_79_learned_parameters.fa -s 31,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b32_79_learned_parameters.fa -s 32,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b33_79_learned_parameters.fa -s 33,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b34_79_learned_parameters.fa -s 34,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b35_79_learned_parameters.fa -s 35,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b36_79_learned_parameters.fa -s 36,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b37_79_learned_parameters.fa -s 37,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b38_79_learned_parameters.fa -s 38,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b39_79_learned_parameters.fa -s 39,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b40_79_learned_parameters.fa -s 40,79

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000036 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000036/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b41_79_learned_parameters.fa -s 41,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b42_79_learned_parameters.fa -s 42,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b43_79_learned_parameters.fa -s 43,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b44_79_learned_parameters.fa -s 44,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b45_79_learned_parameters.fa -s 45,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b46_79_learned_parameters.fa -s 46,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b47_79_learned_parameters.fa -s 47,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b48_79_learned_parameters.fa -s 48,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b49_79_learned_parameters.fa -s 49,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b50_79_learned_parameters.fa -s 50,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b51_79_learned_parameters.fa -s 51,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b52_79_learned_parameters.fa -s 52,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b53_79_learned_parameters.fa -s 53,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b54_79_learned_parameters.fa -s 54,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b55_79_learned_parameters.fa -s 55,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b56_79_learned_parameters.fa -s 56,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b57_79_learned_parameters.fa -s 57,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b58_79_learned_parameters.fa -s 58,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b59_79_learned_parameters.fa -s 59,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b60_79_learned_parameters.fa -s 60,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b61_79_learned_parameters.fa -s 61,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b62_79_learned_parameters.fa -s 62,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b63_79_learned_parameters.fa -s 63,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b64_79_learned_parameters.fa -s 64,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b65_79_learned_parameters.fa -s 65,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b66_79_learned_parameters.fa -s 66,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b67_79_learned_parameters.fa -s 67,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b68_79_learned_parameters.fa -s 68,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b69_79_learned_parameters.fa -s 69,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b70_79_learned_parameters.fa -s 70,79

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000037 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000037/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b71_79_learned_parameters.fa -s 71,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b72_79_learned_parameters.fa -s 72,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b73_79_learned_parameters.fa -s 73,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b74_79_learned_parameters.fa -s 74,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b75_79_learned_parameters.fa -s 75,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b76_79_learned_parameters.fa -s 76,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b77_79_learned_parameters.fa -s 77,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_59_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_59_b78_79_learned_parameters.fa -s 78,79 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_20_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_20_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_20_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_20_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_45_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_45_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_45_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_45_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_60_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_60_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_24_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_24_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_24_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_24_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_2_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_2_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_2_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_2_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_57_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_57_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_57_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_57_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_112_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_112_b0_6_learned_parameters.fa -s 0,6 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_112_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_112_b1_6_learned_parameters.fa -s 1,6 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_112_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_112_b2_6_learned_parameters.fa -s 2,6 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_112_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_112_b3_6_learned_parameters.fa -s 3,6 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_112_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_112_b4_6_learned_parameters.fa -s 4,6 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_112_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_112_b5_6_learned_parameters.fa -s 5,6 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_3_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_3_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_23_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_23_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_23_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_23_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_120_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_120_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_120_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_120_b1_2_learned_parameters.fa -s 1,2

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000038 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000038/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_107_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_107_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_78_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_78_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_78_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_78_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_102_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_102_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_102_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_102_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_55_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_55_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_17_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_17_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_17_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_17_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_1_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_1_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_9_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_9_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_108_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_108_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_108_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_108_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_19_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_19_b0_4_learned_parameters.fa -s 0,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_19_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_19_b1_4_learned_parameters.fa -s 1,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_19_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_19_b2_4_learned_parameters.fa -s 2,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_19_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_19_b3_4_learned_parameters.fa -s 3,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_101_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_101_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_101_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_101_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_83_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_83_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_129_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_129_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_129_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_129_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_98_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_98_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_135_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_135_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_28_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_28_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_28_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_28_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_22_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_22_b0_3_learned_parameters.fa -s 0,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_22_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_22_b1_3_learned_parameters.fa -s 1,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_22_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_22_b2_3_learned_parameters.fa -s 2,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_68_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_68_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_56_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_56_b0_3_learned_parameters.fa -s 0,3

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000039 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000039/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_56_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_56_b1_3_learned_parameters.fa -s 1,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_56_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_56_b2_3_learned_parameters.fa -s 2,3 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_4_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_4_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_4_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_4_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b0_17_learned_parameters.fa -s 0,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b1_17_learned_parameters.fa -s 1,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b2_17_learned_parameters.fa -s 2,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b3_17_learned_parameters.fa -s 3,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b4_17_learned_parameters.fa -s 4,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b5_17_learned_parameters.fa -s 5,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b6_17_learned_parameters.fa -s 6,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b7_17_learned_parameters.fa -s 7,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b8_17_learned_parameters.fa -s 8,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b9_17_learned_parameters.fa -s 9,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b10_17_learned_parameters.fa -s 10,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b11_17_learned_parameters.fa -s 11,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b12_17_learned_parameters.fa -s 12,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b13_17_learned_parameters.fa -s 13,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b14_17_learned_parameters.fa -s 14,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b15_17_learned_parameters.fa -s 15,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_91_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_91_b16_17_learned_parameters.fa -s 16,17 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_35_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_35_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_6_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_6_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_92_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_92_b0_4_learned_parameters.fa -s 0,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_92_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_92_b1_4_learned_parameters.fa -s 1,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_92_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_92_b2_4_learned_parameters.fa -s 2,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_92_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_92_b3_4_learned_parameters.fa -s 3,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_88_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_88_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_88_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_88_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_16_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_16_learned_parameters.fa

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000040 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000040/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_96_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_96_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_97_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_97_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_97_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_97_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_131_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_131_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_131_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_131_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_77_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_77_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_77_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_77_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_95_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_95_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_95_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_95_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_125_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_125_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_5_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_5_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_10_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_10_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_10_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_10_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_109_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_109_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_109_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_109_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_30_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_30_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_30_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_30_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_117_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_117_b0_4_learned_parameters.fa -s 0,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_117_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_117_b1_4_learned_parameters.fa -s 1,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_117_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_117_b2_4_learned_parameters.fa -s 2,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_117_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_117_b3_4_learned_parameters.fa -s 3,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_103_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_103_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_103_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_103_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_87_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_87_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_87_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_87_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_70_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_70_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_70_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_70_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_34_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_34_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b0_9_learned_parameters.fa -s 0,9 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b1_9_learned_parameters.fa -s 1,9

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000041 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000041/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b2_9_learned_parameters.fa -s 2,9 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b3_9_learned_parameters.fa -s 3,9 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b4_9_learned_parameters.fa -s 4,9 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b5_9_learned_parameters.fa -s 5,9 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b6_9_learned_parameters.fa -s 6,9 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b7_9_learned_parameters.fa -s 7,9 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_105_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_105_b8_9_learned_parameters.fa -s 8,9 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_81_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_81_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_62_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_62_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b0_62_learned_parameters.fa -s 0,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b1_62_learned_parameters.fa -s 1,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b2_62_learned_parameters.fa -s 2,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b3_62_learned_parameters.fa -s 3,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b4_62_learned_parameters.fa -s 4,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b5_62_learned_parameters.fa -s 5,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b6_62_learned_parameters.fa -s 6,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b7_62_learned_parameters.fa -s 7,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b8_62_learned_parameters.fa -s 8,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b9_62_learned_parameters.fa -s 9,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b10_62_learned_parameters.fa -s 10,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b11_62_learned_parameters.fa -s 11,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b12_62_learned_parameters.fa -s 12,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b13_62_learned_parameters.fa -s 13,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b14_62_learned_parameters.fa -s 14,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b15_62_learned_parameters.fa -s 15,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b16_62_learned_parameters.fa -s 16,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b17_62_learned_parameters.fa -s 17,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b18_62_learned_parameters.fa -s 18,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b19_62_learned_parameters.fa -s 19,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b20_62_learned_parameters.fa -s 20,62

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000042 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000042/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b21_62_learned_parameters.fa -s 21,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b22_62_learned_parameters.fa -s 22,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b23_62_learned_parameters.fa -s 23,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b24_62_learned_parameters.fa -s 24,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b25_62_learned_parameters.fa -s 25,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b26_62_learned_parameters.fa -s 26,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b27_62_learned_parameters.fa -s 27,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b28_62_learned_parameters.fa -s 28,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b29_62_learned_parameters.fa -s 29,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b30_62_learned_parameters.fa -s 30,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b31_62_learned_parameters.fa -s 31,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b32_62_learned_parameters.fa -s 32,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b33_62_learned_parameters.fa -s 33,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b34_62_learned_parameters.fa -s 34,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b35_62_learned_parameters.fa -s 35,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b36_62_learned_parameters.fa -s 36,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b37_62_learned_parameters.fa -s 37,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b38_62_learned_parameters.fa -s 38,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b39_62_learned_parameters.fa -s 39,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b40_62_learned_parameters.fa -s 40,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b41_62_learned_parameters.fa -s 41,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b42_62_learned_parameters.fa -s 42,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b43_62_learned_parameters.fa -s 43,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b44_62_learned_parameters.fa -s 44,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b45_62_learned_parameters.fa -s 45,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b46_62_learned_parameters.fa -s 46,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b47_62_learned_parameters.fa -s 47,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b48_62_learned_parameters.fa -s 48,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b49_62_learned_parameters.fa -s 49,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b50_62_learned_parameters.fa -s 50,62

calling:  bsub -r -R rusage[mem=4] -R select[tmp>1000 && scratch>1] -q cga -P test -sp 65 -cwd /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000043 -E rm -rf /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286587/iteration1/scatter.0000000043/*; cd "/xchip/tcga" && cd "/xchip/cga" -Q EXCLUDE(167) -e scatter.err -o scatter.out -J scatter_286587   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Scatter.py   /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b51_62_learned_parameters.fa -s 51,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b52_62_learned_parameters.fa -s 52,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b53_62_learned_parameters.fa -s 53,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b54_62_learned_parameters.fa -s 54,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b55_62_learned_parameters.fa -s 55,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b56_62_learned_parameters.fa -s 56,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b57_62_learned_parameters.fa -s 57,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b58_62_learned_parameters.fa -s 58,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b59_62_learned_parameters.fa -s 59,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b60_62_learned_parameters.fa -s 60,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_29_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_29_b61_62_learned_parameters.fa -s 61,62 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_90_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_90_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_133_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_133_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_126_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_126_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_126_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_126_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_69_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_69_b0_2_learned_parameters.fa -s 0,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_69_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_69_b1_2_learned_parameters.fa -s 1,2 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_27_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_27_b0_4_learned_parameters.fa -s 0,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_27_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_27_b1_4_learned_parameters.fa -s 1,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_27_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_27_b2_4_learned_parameters.fa -s 2,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_27_pathway.tab -c ../configEM.txt -b../clusterFiles/ -e ../outputFilesEM/pid_27_b3_4_learned_parameters.fa -s 3,4 : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_128_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_128_learned_parameters.fa : /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/taskLib/ParadigmPrepare.12.3260/paradigm -p ../clusterFiles/pid_21_pathway.tab -c ../configEM.txt -b ../clusterFiles/ -e ../outputFilesEM/pid_21_learned_parameters.fa

Finished submitting scatter jobs at Thu Jan 10 20:55:11 2013 in 0.571798499425 minutes
calling:  bsub -E cd "/xchip/tcga" && cd "/xchip/cga" -q cga -R select[tmp>1000 && scratch>1] -e scatter-gather.err.txt -o scatter-gather.out.txt -w ended(scatter_286587) -J gather_286587 -P test -R rusage[mem=16] -sp 65   python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/Gather.py   0 0.001000

calling:  bsub -E cd "/xchip/cga" -q cga -R select[tmp>1000 && scratch>1] -e iterator.err.txt -o iterator.out.txt -w ended(gather_286587) -J iteration_286587 -P test -sp 65   /xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/scatter-gather-iterator.py /xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/iterative-scatter-gather.py --job-suffix 286587 --priority 65 cga /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/scatter-gather.xml /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Paradigm.22.4020/
Path iteration1 exists:  True
