Warning: No display specified.  You will not be able to display graphics on the screen.
fh_MutSigPreprocess
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigPreprocess.90.3705/
-i
SKCM-TM
-b
hg19
-t
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_hg19.txt
-c
/xchip/cga1/annotation/db/tracks/hg19/c65e
-bd
/xchip/cga1/annotation/db/ucsc/hg19
-cat
4
-maf1
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/SKCM-TM/2284096/maf1.input.tsv
-maflabel1
Broad
-maflabel2
WashU
-maflabel3
Baylor
-wig1
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/SKCM-TM/2284096/wig1.input.tsv
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0_cga.pancan.blacklist.v7.hg19.params.txt

                     mutation_blacklist: [1x73 char]
               perform_mutsig2_analysis: 1
     use_sample_specific_mutation_rates: 1
        analyze_silent_nonsilent_ratios: 1
                 sig_calculation_method: 'projection'
                           print_report: 0
                  clip_tumor_from_names: 1
                                  build: 'hg19'
                              build_dir: '/xchip/cga1/annotation/db/ucsc/hg19'
             keep_barebones_fields_only: 0
    consolidate_adjacent_muts_threshold: 1
             remove_noncoding_mutations: 1
                    enforce_target_list: 0
                            target_list: [1x69 char]
                     mutation_whitelist: []

Loading MAFs for Broad
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A1Q1-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A1Q3-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A1Q4-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A1Q5-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A1Q6-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A1Q7-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A1Q8-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A1Q9-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A1QA-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A1QB-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A2J6-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A2J7-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A2J8-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A2J9-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A2JA-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A2JB-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A2JC-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A2JD-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A2JF-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A2JG-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A2JH-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A2JK-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A2JL-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A2JN-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A2JO-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A2JP-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A3BZ-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A3C1-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A3C3-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A3C6-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A3C7-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A3C8-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A3CB-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A3CC-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A3CE-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A3CF-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A3ML-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A3MO-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A3MR-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A3MU-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D3-A3MV-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D9-A148-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D9-A149-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D9-A1JW-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-D9-A1JX-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-DA-A1HV-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-DA-A1HW-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-DA-A1HY-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-DA-A1I0-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-DA-A1I1-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-DA-A1I2-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-DA-A1I4-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-DA-A1I5-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-DA-A1I7-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-DA-A1I8-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-DA-A1IA-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-DA-A1IB-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-DA-A1IC-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-DA-A3F2-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-DA-A3F3-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-DA-A3F5-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-DA-A3F8-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A17X-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A17Y-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A17Z-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A180-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A181-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A182-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A183-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A184-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A185-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A20B-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A20C-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A20F-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A20H-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A20I-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A29A-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A29B-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A29C-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A29D-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A29E-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A29G-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A29H-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A29L-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A29M-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A29N-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A29P-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A29Q-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A29R-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A29S-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A29T-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A29V-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A29W-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A29X-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2A0-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2A1-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2A2-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2A5-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2A6-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2GB-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2GC-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2GD-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2GE-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2GH-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2GI-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2GJ-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2GK-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2GL-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2GM-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2GN-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2GO-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2GP-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2GR-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2GS-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2GT-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2GU-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2M5-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2M6-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2M7-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2M8-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2MC-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2MD-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2ME-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2MF-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2MG-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2MH-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2MI-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2MJ-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2MK-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2ML-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2MM-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2MN-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2MP-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2MQ-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2MR-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2MS-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2MT-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A2MU-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A3AA-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A3AB-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A3AC-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A3AD-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A3AE-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A3AF-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A3AG-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A3AH-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A3J3-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A3J4-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A3J5-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A3J7-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A3J8-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A3JA-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A3JB-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A3JD-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A3JE-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A3JH-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-EE-A3JI-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A193-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A195-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A197-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A198-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A199-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A19A-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A19B-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A19C-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A19D-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A19E-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A19F-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A19G-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A19H-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A19J-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A19L-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A19N-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A19O-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A19P-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A19Q-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A19S-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A19T-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A1A1-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A2NC-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A2ND-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A2NE-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A2NF-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A2NG-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A2NH-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A3ES-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A3ET-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-ER-A3EV-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1YW-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1YX-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1YY-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1Z0-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1Z3-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1Z4-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1Z7-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1ZA-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1ZB-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1ZC-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1ZD-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1ZE-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1ZF-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1ZG-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1ZH-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1ZJ-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1ZK-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1ZM-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1ZP-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1ZQ-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1ZR-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1ZS-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1ZT-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1ZU-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1ZW-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1ZY-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FS-A1ZZ-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FW-A3I3-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GN-A261-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GN-A262-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GN-A264-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GN-A265-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GN-A266-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GN-A267-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GN-A268-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GN-A26A-06.maf.txt
Loaded /xchip/gdac_data/normalized/diced/skcm/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Mutation_Calling__maf/broad.mit.edu_SKCM.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-GN-A26D-06.maf.txt
Concatenating structs...

                   Annotation_Transcript: [225]
                                BAM_file: [225]
      CCLE_ONCOMAP_overlapping_mutations: [225]
    CCLE_ONCOMAP_total_mutations_in_gene: [225]
                       CGC_Mutation_Type: [225]
                      CGC_Other_Diseases: [225]
               CGC_Translocation_Partner: [225]
                CGC_Tumor_Types_Germline: [225]
                 CGC_Tumor_Types_Somatic: [225]
                     COSMIC_fusion_genes: [225]
            COSMIC_overlapping_mutations: [225]
            COSMIC_tissue_types_affected: [225]
        COSMIC_total_alterations_in_gene: [225]
                                  Center: [225]
                              Chromosome: [225]
                            Codon_Change: [225]
                     DNARepairGenes_Role: [225]
                             Description: [225]
                                DrugBank: [225]
                            End_position: [225]
                          Entrez_Gene_Id: [225]
        FamilialCancerDatabase_Syndromes: [225]
                   GO_Biological_Process: [225]
                   GO_Cellular_Component: [225]
                   GO_Molecular_Function: [225]
                           Genome_Change: [225]
                             Hugo_Symbol: [225]
                MUTSIG_Published_Results: [225]
                  Match_Norm_Seq_Allele1: [225]
                  Match_Norm_Seq_Allele2: [225]
           Match_Norm_Validation_Allele1: [225]
           Match_Norm_Validation_Allele2: [225]
             Matched_Norm_Sample_Barcode: [225]
                Matched_Norm_Sample_UUID: [225]
                         Mutation_Status: [225]
                              NCBI_Build: [225]
                             OREGANNO_ID: [225]
                         OREGANNO_Values: [225]
                       Other_Transcripts: [225]
                          Protein_Change: [225]
                        Reference_Allele: [225]
                          Refseq_mRNA_Id: [225]
                          Refseq_prot_Id: [225]
                                   Score: [225]
                         Sequence_Source: [225]
                               Sequencer: [225]
                        Sequencing_Phase: [225]
                          Start_position: [225]
                                  Strand: [225]
                        SwissProt_acc_Id: [225]
                      SwissProt_entry_Id: [225]
           TCGAscape_Amplification_Peaks: [225]
                TCGAscape_Deletion_Peaks: [225]
                         Transcript_Exon: [225]
                     Transcript_Position: [225]
                       Transcript_Strand: [225]
                    Tumor_Sample_Barcode: [225]
                       Tumor_Sample_UUID: [225]
                       Tumor_Seq_Allele1: [225]
                       Tumor_Seq_Allele2: [225]
                Tumor_Validation_Allele1: [225]
                Tumor_Validation_Allele2: [225]
          Tumorscape_Amplification_Peaks: [225]
               Tumorscape_Deletion_Peaks: [225]
                           UniProt_AApos: [225]
               UniProt_Experimental_Info: [225]
              UniProt_Natural_Variations: [225]
                          UniProt_Region: [225]
                            UniProt_Site: [225]
                       Validation_Method: [225]
                       Validation_Status: [225]
                  Variant_Classification: [225]
                            Variant_Type: [225]
                     Verification_Status: [225]
                             cDNA_Change: [225]
                                 dataset: [225]
                                dbSNP_RS: [225]
                        dbSNP_Val_Status: [225]
                              gc_content: [225]
                          isArtifactMode: [225]
                                 oxoGCut: [225]
                                 patient: [225]
                                     pox: [225]
                              pox_cutoff: [225]
                                     qox: [225]
                             ref_context: [225]
                             t_alt_count: [225]
                             t_ref_count: [225]
                   validation_alt_allele: [225]
                       validation_method: [225]
                       validation_status: [225]
                 validation_tumor_sample: [225]
                               ----TOTAL: [20700]
Calling preprocess_mutations...
WARNING: unknown chromosome(s):
    'M'
    'MT'

Validation_Status:

             : [172938]
    ----TOTAL: [172938]
Omitting the following 4 mutations on nonstandard chromosomes:

            M: [1]
           MT: [3]
    ----TOTAL: [4]
Applying mutation blacklist:  /xchip/cga1/reference/mutsig_params/pancan_mutation_blacklist.v7.hg19.txt
WARNING: unknown chromosome(s):
    {''}

WARNING: chromosome number(s) out of range for this genome
     0

{Warning: The KEYBOARD function cannot be used in compiled applications.} 
> In keyboard at 4
  In convert_chr at 104
  In add_and_convert_simple_fieldnames at 32
  In preprocess_mutations at 77
  In fh_MutSigPreprocess at 200
100000/172934 
Omitting the following 790 blacklisted mutations:
  Columns 1 through 4

    'SKCM-D3-A1Q1-TM'    'LOC653544'       [10]    [135491100]
    'SKCM-D3-A1Q1-TM'    'LOC284232'       [13]    [ 19415742]
    'SKCM-D3-A1Q1-TM'    'FRG1B'           [20]    [ 29628299]
    'SKCM-D3-A1Q1-TM'    'NCOA6'           [20]    [ 33345744]
    'SKCM-D3-A1Q1-TM'    'C21orf99'        [21]    [ 14414855]
    'SKCM-D3-A1Q1-TM'    'Unknown'         [11]    [ 43283606]
    'SKCM-D3-A1Q3-TM'    'FRG1B'           [20]    [ 29625875]
    'SKCM-D3-A1Q3-TM'    'C21orf99'        [21]    [ 14439208]
    'SKCM-D3-A1Q3-TM'    'Unknown'         [22]    [ 18844888]
    'SKCM-D3-A1Q3-TM'    'FIP1L1'          [ 4]    [ 54319248]
    'SKCM-D3-A1Q4-TM'    'FRG1B'           [20]    [ 29628263]
    'SKCM-D3-A1Q4-TM'    'SLC35F5'         [ 2]    [114500277]
    'SKCM-D3-A1Q5-TM'    'FRG1B'           [20]    [ 29628251]
    'SKCM-D3-A1Q5-TM'    'FRG1B'           [20]    [ 29628263]
    'SKCM-D3-A1Q5-TM'    'ZNF706'          [ 8]    [102213947]
    'SKCM-D3-A1Q5-TM'    'CDC27'           [17]    [ 45247389]
    'SKCM-D3-A1Q6-TM'    'Unknown'         [14]    [ 19857036]
    'SKCM-D3-A1Q6-TM'    'FRG1B'           [20]    [ 29628251]
    'SKCM-D3-A1Q6-TM'    'LOC442421'       [ 9]    [ 66499680]
    'SKCM-D3-A1Q6-TM'    'ADAM6'           [14]    [106774086]
    'SKCM-D3-A1Q7-TM'    'Unknown'         [17]    [ 21730916]
    'SKCM-D3-A1Q7-TM'    'TUBBP5'          [ 9]    [141070139]
    'SKCM-D3-A1Q8-TM'    'WASH2P'          [ 2]    [114355998]
    'SKCM-D3-A1Q8-TM'    'ST7'             [ 7]    [116869933]
    'SKCM-D3-A1Q8-TM'    'MAFA'            [ 8]    [144511954]
    'SKCM-D3-A1Q9-TM'    'GLIS2'           [16]    [  4386949]
    'SKCM-D3-A1Q9-TM'    'KRTAP4-8'        [17]    [ 39254054]
    'SKCM-D3-A1Q9-TM'    'Unknown'         [22]    [ 18844888]
    'SKCM-D3-A1Q9-TM'    'TUBBP5'          [ 9]    [141070969]
    'SKCM-D3-A1Q9-TM'    'TUBBP5'          [ 9]    [141071110]
    'SKCM-D3-A1QA-TM'    'LOC440563'       [ 1]    [ 13183780]
    'SKCM-D3-A1QB-TM'    'LOC653544'       [10]    [135491123]
    'SKCM-D3-A1QB-TM'    'Unknown'         [22]    [ 18846025]
    'SKCM-D3-A2J6-TM'    'NBPF10'          [ 1]    [145360584]
    'SKCM-D3-A2J6-TM'    'HLA-A'           [ 6]    [ 29910693]
    'SKCM-D3-A2J8-TM'    'TMEM52'          [ 1]    [  1850628]
    'SKCM-D3-A2J9-TM'    'ARHGAP11B'       [15]    [ 30938316]
    'SKCM-D3-A2J9-TM'    'TUBBP5'          [ 9]    [141071110]
    'SKCM-D3-A2JA-TM'    'EPHA2'           [ 1]    [ 16456043]
    'SKCM-D3-A2JA-TM'    'LOC96610'        [22]    [ 22663086]
    'SKCM-D3-A2JB-TM'    'DNAJB12'         [10]    [ 74114714]
    'SKCM-D3-A2JB-TM'    'MESP2'           [15]    [ 90320121]
    'SKCM-D3-A2JC-TM'    'Unknown'         [21]    [  9769119]
    'SKCM-D3-A2JC-TM'    'SDHAP2'          [ 3]    [195400728]
    'SKCM-D3-A2JC-TM'    'POM121'          [ 7]    [ 72413896]
    'SKCM-D3-A2JC-TM'    'ST7'             [ 7]    [116869938]
    'SKCM-D3-A2JD-TM'    'DDX11'           [12]    [ 31237922]
    'SKCM-D3-A2JD-TM'    'Unknown'         [17]    [ 21731144]
    'SKCM-D3-A2JD-TM'    'ANKRD20B'        [ 2]    [ 95522815]
    'SKCM-D3-A2JD-TM'    'SDHAP1'          [ 3]    [195692311]
    'SKCM-D3-A2JD-TM'    'SEPT7'           [ 7]    [ 35930362]
    'SKCM-D3-A2JG-TM'    'C21orf99'        [21]    [ 14414855]
    'SKCM-D3-A2JH-TM'    'TUBGCP5'         [15]    [ 22855144]
    'SKCM-D3-A2JH-TM'    'GOLGA6L10'       [15]    [ 82635117]
    'SKCM-D3-A2JK-TM'    'THSD1P1'         [13]    [ 52864001]
    'SKCM-D3-A2JK-TM'    'FRG1B'           [20]    [ 29628243]
    'SKCM-D3-A2JK-TM'    'FRG1B'           [20]    [ 29628251]
    'SKCM-D3-A2JL-TM'    'AMAC1'           [17]    [ 33520358]
    'SKCM-D3-A2JL-TM'    'MESP2'           [15]    [ 90320121]
    'SKCM-D3-A2JN-TM'    'LOC284232'       [13]    [ 19413025]
    'SKCM-D3-A2JN-TM'    'LOC284232'       [13]    [ 19414201]
    'SKCM-D3-A2JN-TM'    'FRG1B'           [20]    [ 29628236]
    'SKCM-D3-A2JO-TM'    'LOC642826'       [10]    [ 47207813]
    'SKCM-D3-A2JO-TM'    'MICALCL'         [11]    [ 12316384]
    'SKCM-D3-A2JP-TM'    'RRN3P1'          [16]    [ 21817457]
    'SKCM-D3-A3BZ-TM'    'Unknown'         [ 1]    [    13418]
    'SKCM-D3-A3BZ-TM'    'FLJ36000'        [17]    [ 21904125]
    'SKCM-D3-A3BZ-TM'    'PLXNA1'          [ 3]    [126707544]
    'SKCM-D3-A3C1-TM'    'C17orf97'        [17]    [   263726]
    'SKCM-D3-A3C1-TM'    'FRG1B'           [20]    [ 29628236]
    'SKCM-D3-A3C3-TM'    'RERE'            [ 1]    [  8420609]
    'SKCM-D3-A3C3-TM'    'ARHGAP11B'       [15]    [ 30938316]
    'SKCM-D3-A3C3-TM'    'ARHGAP11B'       [15]    [ 30938440]
    'SKCM-D3-A3C3-TM'    'TUBBP5'          [ 9]    [141071340]
    'SKCM-D3-A3C3-TM'    'CDC42EP1'        [22]    [ 37964409]
    'SKCM-D3-A3C3-TM'    'THSD7A'          [ 7]    [ 11871470]
    'SKCM-D3-A3C6-TM'    'DCP1B'           [12]    [  2062350]
    'SKCM-D3-A3C6-TM'    'Unknown'         [17]    [ 21731144]
    'SKCM-D3-A3C6-TM'    'FRG1B'           [20]    [ 29628263]
    'SKCM-D3-A3C7-TM'    'DHX9'            [ 1]    [182812436]
    'SKCM-D3-A3C7-TM'    'HSD17B7P2'       [10]    [ 38654432]
    'SKCM-D3-A3C7-TM'    'HTR3B'           [11]    [113780017]
    'SKCM-D3-A3C8-TM'    'LOC645752'       [15]    [ 78211548]
    'SKCM-D3-A3C8-TM'    'Unknown'         [17]    [ 39296599]
    'SKCM-D3-A3C8-TM'    'SNAPC4'          [ 9]    [139277995]
    'SKCM-D3-A3CB-TM'    'LOC220429'       [13]    [ 50466990]
    'SKCM-D3-A3CB-TM'    'Unknown'         [15]    [102292820]
    'SKCM-D3-A3CB-TM'    'SDHAP1'          [ 3]    [195701278]
    'SKCM-D3-A3CB-TM'    'RANBP6'          [ 9]    [  6012690]
    'SKCM-D3-A3CC-TM'    'LOC653544'       [10]    [135491123]
    'SKCM-D3-A3CC-TM'    'UPF3A'           [13]    [115047559]
    'SKCM-D3-A3CC-TM'    'ZNF814'          [19]    [ 58386284]
    'SKCM-D3-A3CC-TM'    'LOC220729'       [ 3]    [197348646]
    'SKCM-D3-A3CC-TM'    'SNAPC4'          [ 9]    [139277995]
    'SKCM-D3-A3CE-TM'    'NBPF14'          [ 1]    [148012531]
    'SKCM-D3-A3CE-TM'    'NAB2'            [12]    [ 57485446]
    'SKCM-D3-A3CE-TM'    'TBC1D3P2'        [17]    [ 60342234]
    'SKCM-D3-A3CE-TM'    'FRG1B'           [20]    [ 29628251]
    'SKCM-D3-A3CF-TM'    'NUDT11'          [23]    [ 51239296]
    'SKCM-D3-A3ML-TM'    'LCE1D'           [ 1]    [152770474]
    'SKCM-D3-A3ML-TM'    'LOC374491'       [13]    [ 25161397]
    'SKCM-D3-A3ML-TM'    'LOC647288'       [13]    [ 75814354]
    'SKCM-D3-A3ML-TM'    'ADCK5'           [ 8]    [145617535]
    'SKCM-D3-A3MO-TM'    'KRTAP4-12'       [17]    [ 39280087]
    'SKCM-D3-A3MO-TM'    'MUC4'            [ 3]    [195505835]
    'SKCM-D3-A3MO-TM'    'MUC4'            [ 3]    [195505838]
    'SKCM-D3-A3MO-TM'    'ZNF92'           [ 7]    [ 64863705]
    'SKCM-D3-A3MR-TM'    'Unknown'         [16]    [ 70268158]
    'SKCM-D3-A3MR-TM'    'ZNF814'          [19]    [ 58385762]
    'SKCM-D3-A3MU-TM'    'LOC220429'       [13]    [ 50466990]
    'SKCM-D3-A3MU-TM'    'Unknown'         [17]    [ 21730916]
    'SKCM-D3-A3MU-TM'    'MUC4'            [ 3]    [195506005]
    'SKCM-D3-A3MU-TM'    'MLLT3'           [ 9]    [ 20414379]
    'SKCM-D3-A3MV-TM'    'TTN'             [ 2]    [179467100]
    'SKCM-D3-A3MV-TM'    'EEF1B2'          [ 2]    [207025358]
    'SKCM-D3-A3MV-TM'    'EEF1B2'          [ 2]    [207025366]
    'SKCM-D3-A3MV-TM'    'C21orf99'        [21]    [ 14439208]
    'SKCM-D9-A148-TM'    'NBPF10'          [ 1]    [145367739]
    'SKCM-D9-A148-TM'    'Unknown'         [16]    [ 70268158]
    'SKCM-D9-A148-TM'    'C6orf223'        [ 6]    [ 43970504]
    'SKCM-D9-A149-TM'    'ZNF99'           [19]    [ 22940373]
    'SKCM-D9-A149-TM'    'Unknown'         [ 9]    [ 69067873]
    'SKCM-D9-A149-TM'    'MSH3'            [ 5]    [ 79950742]
    'SKCM-D9-A1JW-TM'    'Unknown'         [11]    [ 43283606]
    'SKCM-D9-A1JW-TM'    'C6orf153'        [ 6]    [ 42989414]
    'SKCM-D9-A1JX-TM'    'HSD17B7P2'       [10]    [ 38654432]
    'SKCM-D9-A1JX-TM'    'POLR3B'          [12]    [106820975]
    'SKCM-D9-A1JX-TM'    'LOC284232'       [13]    [ 19414116]
    'SKCM-D9-A1JX-TM'    'UPF3A'           [13]    [115047559]
    'SKCM-D9-A1JX-TM'    'LOC96610'        [22]    [ 22664186]
    'SKCM-DA-A1HV-TM'    'NBPF1'           [ 1]    [ 16918653]
    'SKCM-DA-A1HV-TM'    'FMN2'            [ 1]    [240370954]
    'SKCM-DA-A1HV-TM'    'EP400'           [12]    [132547087]
    'SKCM-DA-A1HV-TM'    'KRTAP4-11'       [17]    [ 39274415]
    'SKCM-DA-A1HW-TM'    'Unknown'         [ 9]    [ 68414259]
    'SKCM-DA-A1HW-TM'    'POLDIP2'         [17]    [ 26684394]
    'SKCM-DA-A1HW-TM'    'CCDC28A'         [ 6]    [139097330]
    'SKCM-DA-A1HY-TM'    'ANKRD32'         [ 5]    [ 94030832]
    'SKCM-DA-A1HY-TM'    'Unknown'         [11]    [ 43283606]
    'SKCM-DA-A1I0-TM'    'GOLGA6L5'        [15]    [ 85055802]
    'SKCM-DA-A1I0-TM'    'AMZ2P1'          [17]    [ 62968690]
    'SKCM-DA-A1I0-TM'    'TPTE'            [21]    [ 11014987]
    'SKCM-DA-A1I1-TM'    'HSD17B7P2'       [10]    [ 38654432]
    'SKCM-DA-A1I1-TM'    'Unknown'         [16]    [ 70268158]
    'SKCM-DA-A1I1-TM'    'ZNF493'          [19]    [ 21606712]
    'SKCM-DA-A1I1-TM'    'SMAP1'           [ 6]    [ 71508370]
    'SKCM-DA-A1I1-TM'    'NUDT11'          [23]    [ 51239296]
    'SKCM-DA-A1I2-TM'    'Unknown'         [15]    [ 82620400]
    'SKCM-DA-A1I2-TM'    'Unknown'         [16]    [ 15457701]
    'SKCM-DA-A1I2-TM'    'LLGL2'           [17]    [ 73569700]
    'SKCM-DA-A1I2-TM'    'TBP'             [ 6]    [170871052]
    'SKCM-DA-A1I4-TM'    'HSD17B7P2'       [10]    [ 38654432]
    'SKCM-DA-A1I4-TM'    'LOC100288778'    [12]    [    88651]
    'SKCM-DA-A1I4-TM'    'RGPD5'           [ 2]    [113127775]
    'SKCM-DA-A1I4-TM'    'SDHAP2'          [ 3]    [195410687]
    'SKCM-DA-A1I4-TM'    'ADAM6'           [14]    [106774086]
    'SKCM-DA-A1I4-TM'    'XPC'             [ 3]    [ 14219966]
    'SKCM-DA-A1I4-TM'    'PRIM2'           [ 6]    [ 57512916]
    'SKCM-DA-A1I4-TM'    'SSPO'            [ 7]    [149518533]
    'SKCM-DA-A1I5-TM'    'INTS4'           [11]    [ 77614629]
    'SKCM-DA-A1I7-TM'    'MST1P2'          [ 1]    [ 16974277]
    'SKCM-DA-A1I7-TM'    'YY1'             [14]    [100705788]
    'SKCM-DA-A1I8-TM'    'LOC650368'       [11]    [  3427765]
    'SKCM-DA-A1I8-TM'    'Unknown'         [14]    [ 19857036]
    'SKCM-DA-A1I8-TM'    'FGFRL1'          [ 4]    [  1019055]
    'SKCM-DA-A1IA-TM'    'Unknown'         [ 1]    [    13418]
    'SKCM-DA-A1IA-TM'    'MST1P2'          [ 1]    [ 16974662]
    'SKCM-DA-A1IA-TM'    'HSD17B7P2'       [10]    [ 38654432]
    'SKCM-DA-A1IA-TM'    'WASH2P'          [ 2]    [114355998]
    'SKCM-DA-A1IA-TM'    'MMP12'           [11]    [102738795]
    'SKCM-DA-A1IA-TM'    'KCNN2'           [ 5]    [113698631]
    'SKCM-DA-A1IB-TM'    'Unknown'         [17]    [ 45105705]
    'SKCM-DA-A1IB-TM'    'ADAM6'           [14]    [106774086]
    'SKCM-DA-A1IC-TM'    'WASH2P'          [ 2]    [114355998]
    'SKCM-DA-A3F2-TM'    'CYP2D7P1'        [22]    [ 42538870]
    'SKCM-DA-A3F2-TM'    'MUC4'            [ 3]    [195511945]
    'SKCM-DA-A3F3-TM'    'WASH2P'          [ 2]    [114355998]
    'SKCM-DA-A3F3-TM'    'LOC100133050'    [ 5]    [ 99715528]
    'SKCM-DA-A3F5-TM'    'MUC4'            [ 3]    [195515077]
    'SKCM-DA-A3F5-TM'    'TUBBP5'          [ 9]    [141071340]
    'SKCM-DA-A3F5-TM'    'BCL11B'          [14]    [ 99641544]
    'SKCM-DA-A3F8-TM'    'EP400'           [12]    [132547087]
    'SKCM-DA-A3F8-TM'    'Unknown'         [16]    [ 28354353]
    'SKCM-DA-A3F8-TM'    'Unknown'         [17]    [ 39296158]
    'SKCM-DA-A3F8-TM'    'UGT2B10'         [ 4]    [ 69870669]
    'SKCM-DA-A3F8-TM'    'PRDM15'          [21]    [ 43221415]
    'SKCM-EE-A17X-TM'    'LOC650368'       [11]    [  3427845]
    'SKCM-EE-A17X-TM'    'LOC220429'       [13]    [ 50466990]
    'SKCM-EE-A17X-TM'    'ARHGAP11B'       [15]    [ 30938316]
    'SKCM-EE-A17X-TM'    'GOLGA6L10'       [15]    [ 82635117]
    'SKCM-EE-A17X-TM'    'RRN3P1'          [16]    [ 21817457]
    'SKCM-EE-A17X-TM'    'PELP1'           [17]    [  4575893]
    'SKCM-EE-A17X-TM'    'Unknown'         [17]    [ 45105705]
    'SKCM-EE-A17X-TM'    'AQP12B'          [ 2]    [241622081]
    'SKCM-EE-A17Y-TM'    'CROCCL1'         [ 1]    [ 16946407]
    'SKCM-EE-A17Y-TM'    'ADAM6'           [14]    [106774086]
    'SKCM-EE-A17Z-TM'    'NBPF1'           [ 1]    [ 16918653]
    'SKCM-EE-A17Z-TM'    'HSD17B7P2'       [10]    [ 38654432]
    'SKCM-EE-A17Z-TM'    'TBC1D3P2'        [17]    [ 60342280]
    'SKCM-EE-A17Z-TM'    'ITPKB'           [ 1]    [226924876]
    'SKCM-EE-A17Z-TM'    'CAMSAP1'         [ 9]    [138715799]
    'SKCM-EE-A180-TM'    'LOC653544'       [10]    [135491125]
    'SKCM-EE-A181-TM'    'POM121'          [ 7]    [ 72413896]
    'SKCM-EE-A182-TM'    'POLR3B'          [12]    [106820975]
    'SKCM-EE-A182-TM'    'AMZ2P1'          [17]    [ 62968690]
    'SKCM-EE-A182-TM'    'FCGBP'           [19]    [ 40367841]
    'SKCM-EE-A182-TM'    'TTN'             [ 2]    [179585312]
    'SKCM-EE-A182-TM'    'GGT3P'           [22]    [ 18778612]
    'SKCM-EE-A182-TM'    'GPX1'            [ 3]    [ 49395482]
    'SKCM-EE-A183-TM'    'TGFBR2'          [ 3]    [ 30691871]
    'SKCM-EE-A183-TM'    'SYN2'            [ 3]    [ 12046124]
    'SKCM-EE-A184-TM'    'WASH3P'          [15]    [102515299]
    'SKCM-EE-A184-TM'    'RRN3P1'          [16]    [ 21817457]
    'SKCM-EE-A184-TM'    'FRG1B'           [20]    [ 29628245]
    'SKCM-EE-A185-TM'    'PLCH2'           [ 1]    [  2430086]
    'SKCM-EE-A185-TM'    'C6orf153'        [ 6]    [ 42989414]
    'SKCM-EE-A20B-TM'    'LOC653544'       [10]    [135491113]
    'SKCM-EE-A20B-TM'    'Unknown'         [12]    [ 31307356]
    'SKCM-EE-A20B-TM'    'FRG1B'           [20]    [ 29628236]
    'SKCM-EE-A20H-TM'    'NBPF1'           [ 1]    [ 16918653]
    'SKCM-EE-A20H-TM'    'C19orf26'        [19]    [  1233530]
    'SKCM-EE-A20H-TM'    'EN1'             [ 2]    [119604516]
    'SKCM-EE-A20H-TM'    'TTN'             [ 2]    [179440352]
    'SKCM-EE-A20H-TM'    'POU4F1'          [13]    [ 79176484]
    'SKCM-EE-A20H-TM'    'SFRS12IP1'       [ 5]    [ 64023941]
    'SKCM-EE-A20I-TM'    'LOC284232'       [13]    [ 19415742]
    'SKCM-EE-A20I-TM'    'RRN3P3'          [16]    [ 22441236]
    'SKCM-EE-A20I-TM'    'LOC100133050'    [ 5]    [ 99715528]
    'SKCM-EE-A20I-TM'    'PRSS50'          [ 3]    [ 46759228]
    'SKCM-EE-A29A-TM'    'NBPF1'           [ 1]    [ 16918653]
    'SKCM-EE-A29A-TM'    'NBPF10'          [ 1]    [145360584]
    'SKCM-EE-A29A-TM'    'NBPF10'          [ 1]    [145367739]
    'SKCM-EE-A29A-TM'    'Unknown'         [14]    [ 19857036]
    'SKCM-EE-A29A-TM'    'AMZ2P1'          [17]    [ 62968690]
    'SKCM-EE-A29B-TM'    'LOC653544'       [10]    [135491123]
    'SKCM-EE-A29D-TM'    'KRTAP1-3'        [17]    [ 39190779]
    'SKCM-EE-A29D-TM'    'WASH2P'          [ 2]    [114355998]
    'SKCM-EE-A29D-TM'    'POM121L9P'       [22]    [ 24659734]
    'SKCM-EE-A29D-TM'    'TBP'             [ 6]    [170871064]
    'SKCM-EE-A29E-TM'    'RNPEP'           [ 1]    [201974754]
    'SKCM-EE-A29E-TM'    'TTN'             [ 2]    [179467100]
    'SKCM-EE-A29G-TM'    'Unknown'         [16]    [ 70268158]
    'SKCM-EE-A29G-TM'    'FRG1B'           [20]    [ 29628236]
    'SKCM-EE-A29G-TM'    'LOC96610'        [22]    [ 22664240]
    'SKCM-EE-A29G-TM'    'POLDIP2'         [17]    [ 26684394]
    'SKCM-EE-A29G-TM'    'SMAP1'           [ 6]    [ 71508370]
    'SKCM-EE-A29H-TM'    'LOC653544'       [10]    [135491100]
    'SKCM-EE-A29H-TM'    'EP400'           [12]    [132547138]
    'SKCM-EE-A29H-TM'    'MSH3'            [ 5]    [ 79950742]
    'SKCM-EE-A29L-TM'    'Unknown'         [10]    [ 49218553]
    'SKCM-EE-A29L-TM'    'ADAM6'           [14]    [107062360]
    'SKCM-EE-A29L-TM'    'KRTAP1-3'        [17]    [ 39190779]
    'SKCM-EE-A29M-TM'    'RPL13AP20'       [12]    [ 13028751]
    'SKCM-EE-A29M-TM'    'POM121L9P'       [22]    [ 24659591]
    'SKCM-EE-A29M-TM'    'POM121L9P'       [22]    [ 24659593]
    'SKCM-EE-A29N-TM'    'Unknown'         [16]    [ 15457701]
    'SKCM-EE-A29P-TM'    'NBPF1'           [ 1]    [ 16918653]
    'SKCM-EE-A29P-TM'    'Unknown'         [15]    [ 76074470]
    'SKCM-EE-A29P-TM'    'FLJ36000'        [17]    [ 21904193]
    'SKCM-EE-A29P-TM'    'ADAM6'           [14]    [106774086]
    'SKCM-EE-A29P-TM'    'WRAP53'          [17]    [  7606722]
    'SKCM-EE-A29Q-TM'    'MST1P2'          [ 1]    [ 16974277]
    'SKCM-EE-A29Q-TM'    'MST1P2'          [ 1]    [ 16974549]
    'SKCM-EE-A29Q-TM'    'WHAMML1'         [15]    [ 23205094]
    'SKCM-EE-A29Q-TM'    'ZNF708'          [19]    [ 21476689]
    'SKCM-EE-A29Q-TM'    'C21orf99'        [21]    [ 14414855]
    'SKCM-EE-A29R-TM'    'Unknown'         [ 1]    [    13418]
    'SKCM-EE-A29R-TM'    'LOC220729'       [ 3]    [197348739]
    'SKCM-EE-A29R-TM'    'FRG1'            [ 4]    [190878646]
    'SKCM-EE-A29R-TM'    'RPL23AP53'       [ 8]    [   163215]
    'SKCM-EE-A29R-TM'    'RPL23AP53'       [ 8]    [   163401]
    'SKCM-EE-A29R-TM'    'LOC442421'       [ 9]    [ 66499680]
    'SKCM-EE-A29R-TM'    'MESP2'           [15]    [ 90320121]
    'SKCM-EE-A29R-TM'    'VENTXP7'         [ 3]    [ 21447901]
    'SKCM-EE-A29R-TM'    'TNXB'            [ 6]    [ 32063513]
    'SKCM-EE-A29S-TM'    'MST1P2'          [ 1]    [ 16974549]
    'SKCM-EE-A29S-TM'    'SAFB2'           [19]    [  5590342]
    'SKCM-EE-A29S-TM'    'RBM5'            [ 3]    [ 50155888]
    'SKCM-EE-A29T-TM'    'FRG1B'           [20]    [ 29628236]
    'SKCM-EE-A29T-TM'    'RPL23AP53'       [ 8]    [   163401]
    'SKCM-EE-A29V-TM'    'LOC96610'        [22]    [ 22664606]
    'SKCM-EE-A29V-TM'    'NOTCH1'          [ 9]    [139413214]
    'SKCM-EE-A29W-TM'    'MUC5B'           [11]    [  1265993]
    'SKCM-EE-A29W-TM'    'MUC5B'           [11]    [  1265997]
    'SKCM-EE-A29W-TM'    'CBX4'            [17]    [ 77808240]
    'SKCM-EE-A29X-TM'    'ADAM6'           [14]    [107062402]
    'SKCM-EE-A29X-TM'    'CCDC144C'        [17]    [ 20224794]
    'SKCM-EE-A2A0-TM'    'CROCCL1'         [ 1]    [ 16946434]
    'SKCM-EE-A2A0-TM'    'Unknown'         [10]    [ 49218498]
    'SKCM-EE-A2A0-TM'    'LOC653544'       [10]    [135491113]
    'SKCM-EE-A2A0-TM'    'Unknown'         [14]    [ 19857036]
    'SKCM-EE-A2A0-TM'    'FRG1B'           [20]    [ 29628263]
    'SKCM-EE-A2A1-TM'    'LOC650368'       [11]    [  3427845]
    'SKCM-EE-A2A1-TM'    'C21orf99'        [21]    [ 14439185]
    'SKCM-EE-A2A1-TM'    'C21orf99'        [21]    [ 14439208]
    'SKCM-EE-A2A1-TM'    'Unknown'         [22]    [ 18844888]
    'SKCM-EE-A2A1-TM'    'SYN2'            [ 3]    [ 12046124]
    'SKCM-EE-A2A2-TM'    'PRAMEF11'        [ 1]    [ 12885289]
    'SKCM-EE-A2A2-TM'    'KIAA0907'        [ 1]    [155887393]
    'SKCM-EE-A2A2-TM'    'PRG4'            [ 1]    [186276229]
    'SKCM-EE-A2A2-TM'    'PRG4'            [ 1]    [186276588]
    'SKCM-EE-A2A2-TM'    'CCDC6'           [10]    [ 61666066]
    'SKCM-EE-A2A2-TM'    'GOLGA8DP'        [15]    [ 22709637]
    'SKCM-EE-A2A2-TM'    'Unknown'         [15]    [102292829]
    'SKCM-EE-A2A2-TM'    'SLC6A10P'        [16]    [ 32890622]
    'SKCM-EE-A2A2-TM'    'Unknown'         [17]    [ 21730916]
    'SKCM-EE-A2A2-TM'    'FLJ36000'        [17]    [ 21904114]
    'SKCM-EE-A2A2-TM'    'FLJ36000'        [17]    [ 21904125]
    'SKCM-EE-A2A2-TM'    'LILRP2'          [19]    [ 55221570]
    'SKCM-EE-A2A2-TM'    'ANKRD20B'        [ 2]    [ 95522815]
    'SKCM-EE-A2A2-TM'    'WASH2P'          [ 2]    [114355129]
    'SKCM-EE-A2A2-TM'    'LOC96610'        [22]    [ 22664186]
    'SKCM-EE-A2A2-TM'    'LOC96610'        [22]    [ 22664606]
    'SKCM-EE-A2A2-TM'    'FAM86D'          [ 3]    [ 75475709]
    'SKCM-EE-A2A2-TM'    'LOC220729'       [ 3]    [197348634]
    'SKCM-EE-A2A2-TM'    'HLA-A'           [ 6]    [ 29911199]
    'SKCM-EE-A2A2-TM'    'LOC442421'       [ 9]    [ 66499680]
    'SKCM-EE-A2A2-TM'    'TUBBP5'          [ 9]    [141070139]
    'SKCM-EE-A2A2-TM'    'MAPKAPK2'        [ 1]    [206858676]
    'SKCM-EE-A2A2-TM'    'FRMD4A'          [10]    [ 13699134]
    'SKCM-EE-A2A2-TM'    'VPS37B'          [12]    [123351892]
    'SKCM-EE-A2A2-TM'    'CBX4'            [17]    [ 77808241]
    'SKCM-EE-A2A2-TM'    'ONECUT2'         [18]    [ 55103477]
    'SKCM-EE-A2A2-TM'    'ELAVL3'          [19]    [ 11577605]
    'SKCM-EE-A2A2-TM'    'CD93'            [20]    [ 23066789]
    'SKCM-EE-A2A2-TM'    'H1FOO'           [ 3]    [129268107]
    'SKCM-EE-A2A2-TM'    'SCHIP1'          [ 3]    [159482272]
    'SKCM-EE-A2A2-TM'    'FOXE1'           [ 9]    [100616701]
    'SKCM-EE-A2A5-TM'    'RRN3P1'          [16]    [ 21817457]
    'SKCM-EE-A2A6-TM'    'PRG4'            [ 1]    [186276100]
    'SKCM-EE-A2A6-TM'    'FLJ36000'        [17]    [ 21904114]
    'SKCM-EE-A2A6-TM'    'FRG1B'           [20]    [ 29628245]
    'SKCM-EE-A2GB-TM'    'NBPF10'          [ 1]    [145360584]
    'SKCM-EE-A2GB-TM'    'HSD17B7P2'       [10]    [ 38654432]
    'SKCM-EE-A2GB-TM'    'NAB2'            [12]    [ 57485457]
    'SKCM-EE-A2GB-TM'    'POM121L9P'       [22]    [ 24659591]
    'SKCM-EE-A2GB-TM'    'ANKRD32'         [ 5]    [ 94030836]
    'SKCM-EE-A2GB-TM'    'TUBBP5'          [ 9]    [141070111]
    'SKCM-EE-A2GB-TM'    'TUBBP5'          [ 9]    [141071110]
    'SKCM-EE-A2GB-TM'    'ZNF598'          [16]    [  2049882]
    'SKCM-EE-A2GB-TM'    'SNAPC4'          [ 9]    [139277995]
    'SKCM-EE-A2GC-TM'    'LOC220429'       [13]    [ 50466990]
    'SKCM-EE-A2GC-TM'    'LOC100133050'    [ 5]    [ 99715528]
    'SKCM-EE-A2GD-TM'    'ST7'             [ 7]    [116869938]
    'SKCM-EE-A2GD-TM'    'TUBBP5'          [ 9]    [141071110]
    'SKCM-EE-A2GE-TM'    'LOC100125556'    [ 3]    [125647396]
    'SKCM-EE-A2GH-TM'    'Unknown'         [17]    [ 45105705]
    'SKCM-EE-A2GH-TM'    'PCSK9'           [ 1]    [ 55505552]
    'SKCM-EE-A2GJ-TM'    'CROCCL1'         [ 1]    [ 16946438]
    'SKCM-EE-A2GJ-TM'    'LOC284232'       [13]    [ 19413025]
    'SKCM-EE-A2GJ-TM'    'RRN3P3'          [16]    [ 22441236]
    'SKCM-EE-A2GJ-TM'    'AQP12A'          [ 2]    [241631577]
    'SKCM-EE-A2GJ-TM'    'DRD5'            [ 4]    [  9784028]
    'SKCM-EE-A2GJ-TM'    'PLAC4'           [21]    [ 42551272]
    'SKCM-EE-A2GJ-TM'    'SCHIP1'          [ 3]    [159482272]
    'SKCM-EE-A2GJ-TM'    'OTOP1'           [ 4]    [  4228274]
    'SKCM-EE-A2GK-TM'    'WHAMML1'         [15]    [ 23205094]
    'SKCM-EE-A2GK-TM'    'FAM22F'          [ 9]    [ 97080945]
    'SKCM-EE-A2GL-TM'    'LOC284232'       [13]    [ 19415641]
    'SKCM-EE-A2GL-TM'    'LOC647288'       [13]    [ 75814354]
    'SKCM-EE-A2GM-TM'    'MST1P2'          [ 1]    [ 16974592]
    'SKCM-EE-A2GM-TM'    'MST1P2'          [ 1]    [ 16974955]
    'SKCM-EE-A2GM-TM'    'PARG'            [10]    [ 51093329]
    'SKCM-EE-A2GM-TM'    'EP400'           [12]    [132547138]
    'SKCM-EE-A2GM-TM'    'SPDYE7P'         [ 7]    [ 72339497]
    'SKCM-EE-A2GM-TM'    'TNXB'            [ 6]    [ 32063513]
    'SKCM-EE-A2GM-TM'    'MAP3K4'          [ 6]    [161413044]
    'SKCM-EE-A2GN-TM'    'Unknown'         [ 1]    [    13418]
    'SKCM-EE-A2GN-TM'    'LOC96610'        [22]    [ 22663086]
    'SKCM-EE-A2GN-TM'    'POM121L9P'       [22]    [ 24659578]
    'SKCM-EE-A2GN-TM'    'MMP12'           [11]    [102738795]
    'SKCM-EE-A2GO-TM'    'MST1P2'          [ 1]    [ 16974312]
    'SKCM-EE-A2GO-TM'    'HSD17B7P2'       [10]    [ 38654432]
    'SKCM-EE-A2GO-TM'    'LOC96610'        [22]    [ 22663086]
    'SKCM-EE-A2GP-TM'    'HSD17B7P2'       [10]    [ 38654432]
    'SKCM-EE-A2GP-TM'    'Unknown'         [10]    [ 49218553]
    'SKCM-EE-A2GP-TM'    'LOC653544'       [10]    [135491113]
    'SKCM-EE-A2GP-TM'    'ST7'             [ 7]    [116869938]
    'SKCM-EE-A2GP-TM'    'LOC442421'       [ 9]    [ 66500841]
    'SKCM-EE-A2GP-TM'    'TSKU'            [11]    [ 76506673]
    'SKCM-EE-A2GR-TM'    'LOC284232'       [13]    [ 19413025]
    'SKCM-EE-A2GR-TM'    'LOC284232'       [13]    [ 19413033]
    'SKCM-EE-A2GR-TM'    'FBXO15'          [18]    [ 71740886]
    'SKCM-EE-A2GR-TM'    'ZNF493'          [19]    [ 21606712]
    'SKCM-EE-A2GS-TM'    'TUBG2'           [17]    [ 40818353]
    'SKCM-EE-A2GS-TM'    'NOTCH2'          [ 1]    [120612003]
    'SKCM-EE-A2GS-TM'    'FNBP4'           [11]    [ 47788664]
    'SKCM-EE-A2GT-TM'    'MBD6'            [12]    [ 57919593]
    'SKCM-EE-A2GU-TM'    'LOC441666'       [10]    [ 42832122]
    'SKCM-EE-A2GU-TM'    'LOC374491'       [13]    [ 25161397]
    'SKCM-EE-A2GU-TM'    'Unknown'         [15]    [ 76074470]
    'SKCM-EE-A2GU-TM'    'RRN3P1'          [16]    [ 21817457]
    'SKCM-EE-A2GU-TM'    'C21orf99'        [21]    [ 14414855]
    'SKCM-EE-A2M5-TM'    'NBPF10'          [ 1]    [145367767]
    'SKCM-EE-A2M5-TM'    'ADAM6'           [14]    [107062360]
    'SKCM-EE-A2M5-TM'    'LOC645752'       [15]    [ 78211648]
    'SKCM-EE-A2M5-TM'    'FRMD4A'          [10]    [ 13699134]
    'SKCM-EE-A2M5-TM'    'TMEM121'         [14]    [105996050]
    'SKCM-EE-A2M7-TM'    'DDX12'           [12]    [  9580280]
    'SKCM-EE-A2M7-TM'    'TMEM52'          [ 1]    [  1850628]
    'SKCM-EE-A2M8-TM'    'MMP12'           [11]    [102738795]
    'SKCM-EE-A2MC-TM'    'MST1P2'          [ 1]    [ 16974277]
    'SKCM-EE-A2MC-TM'    'LOC653544'       [10]    [135491100]
    'SKCM-EE-A2MC-TM'    'Unknown'         [ 2]    [ 96593000]
    'SKCM-EE-A2MC-TM'    'SDHAP1'          [ 3]    [195701278]
    'SKCM-EE-A2MC-TM'    'NOTCH2'          [ 1]    [120612003]
    'SKCM-EE-A2MC-TM'    'POLDIP2'         [17]    [ 26684394]
    'SKCM-EE-A2MC-TM'    'KCNG2'           [18]    [ 77623691]
    'SKCM-EE-A2MD-TM'    'C21orf99'        [21]    [ 14439208]
    'SKCM-EE-A2MD-TM'    'LOC96610'        [22]    [ 22664606]
    'SKCM-EE-A2MD-TM'    'OR12D2'          [ 6]    [ 29365088]
    'SKCM-EE-A2MD-TM'    'TBP'             [ 6]    [170871052]
    'SKCM-EE-A2ME-TM'    'LOC647288'       [13]    [ 75814354]
    'SKCM-EE-A2MF-TM'    'Unknown'         [10]    [ 48968566]
    'SKCM-EE-A2MF-TM'    'LOC100288778'    [12]    [    88651]
    'SKCM-EE-A2MF-TM'    'Unknown'         [15]    [102292770]
    'SKCM-EE-A2MF-TM'    'Unknown'         [22]    [ 18844888]
    'SKCM-EE-A2MF-TM'    'RPL23AP53'       [ 8]    [   163215]
    'SKCM-EE-A2MF-TM'    'NOTCH2'          [ 1]    [120612003]
    'SKCM-EE-A2MF-TM'    'ADNP2'           [18]    [ 77894260]
    'SKCM-EE-A2MF-TM'    'GPX1'            [ 3]    [ 49395674]
    'SKCM-EE-A2MF-TM'    'FAM22F'          [ 9]    [ 97080945]
    'SKCM-EE-A2MF-TM'    'F8'              [23]    [154157686]
    'SKCM-EE-A2MH-TM'    'Unknown'         [12]    [    92119]
    'SKCM-EE-A2MH-TM'    'Unknown'         [14]    [ 19857036]
    'SKCM-EE-A2MH-TM'    'Unknown'         [16]    [ 32070612]
    'SKCM-EE-A2MH-TM'    'KRTAP1-5'        [17]    [ 39183145]
    'SKCM-EE-A2MI-TM'    'Unknown'         [22]    [ 18844888]
    'SKCM-EE-A2MI-TM'    'ST7'             [ 7]    [116869938]
    'SKCM-EE-A2MI-TM'    'ABO'             [ 9]    [136131057]
    'SKCM-EE-A2MJ-TM'    'GPX1'            [ 3]    [ 49395482]
    'SKCM-EE-A2MJ-TM'    'MAPKAPK2'        [ 1]    [206858676]
    'SKCM-EE-A2MJ-TM'    'GRLF1'           [19]    [ 47503883]
    'SKCM-EE-A2MJ-TM'    'C9orf150'        [ 9]    [ 12775861]
    'SKCM-EE-A2MK-TM'    'Unknown'         [ 1]    [    13418]
    'SKCM-EE-A2MK-TM'    'MST1P2'          [ 1]    [ 16974592]
    'SKCM-EE-A2MK-TM'    'Unknown'         [10]    [ 49218553]
    'SKCM-EE-A2MK-TM'    'EP400'           [12]    [132547093]
    'SKCM-EE-A2MK-TM'    'ADAM6'           [14]    [107062360]
    'SKCM-EE-A2MK-TM'    'TSKU'            [11]    [ 76506673]
    'SKCM-EE-A2MK-TM'    'C6orf223'        [ 6]    [ 43970504]
    'SKCM-EE-A2ML-TM'    'Unknown'         [10]    [ 49218498]
    'SKCM-EE-A2ML-TM'    'APOB48R'         [16]    [ 28507398]
    'SKCM-EE-A2ML-TM'    'PTPN18'          [ 2]    [131129929]
    'SKCM-EE-A2MM-TM'    'TUBBP5'          [ 9]    [141071110]
    'SKCM-EE-A2MM-TM'    'CIZ1'            [ 9]    [130953109]
    'SKCM-EE-A2MN-TM'    'DHX9'            [ 1]    [182812436]
    'SKCM-EE-A2MN-TM'    'C21orf99'        [21]    [ 14439208]
    'SKCM-EE-A2MN-TM'    'TNFRSF13C'       [22]    [ 42321458]
    'SKCM-EE-A2MP-TM'    'Unknown'         [10]    [ 48968566]
    'SKCM-EE-A2MP-TM'    'LOC645752'       [15]    [ 78211648]
    'SKCM-EE-A2MP-TM'    'TUBBP5'          [ 9]    [141071340]
    'SKCM-EE-A2MQ-TM'    'NBPF10'          [ 1]    [145367739]
    'SKCM-EE-A2MQ-TM'    'DCP1B'           [12]    [  2062350]
    'SKCM-EE-A2MQ-TM'    'GNB2'            [ 7]    [100274423]
    'SKCM-EE-A2MR-TM'    'AMZ2P1'          [17]    [ 62968690]
    'SKCM-EE-A2MS-TM'    'FRG1B'           [20]    [ 29628236]
    'SKCM-EE-A2MS-TM'    'C6orf153'        [ 6]    [ 42989414]
    'SKCM-EE-A2MT-TM'    'MST1P2'          [ 1]    [ 16974549]
    'SKCM-EE-A2MT-TM'    'POTEC'           [18]    [ 14513675]
    'SKCM-EE-A2MT-TM'    'LOC220729'       [ 3]    [197348646]
    'SKCM-EE-A2MU-TM'    'NBPF10'          [ 1]    [145367767]
    'SKCM-EE-A3AA-TM'    'NBPF10'          [ 1]    [145367739]
    'SKCM-EE-A3AA-TM'    'Unknown'         [17]    [ 45105705]
    'SKCM-EE-A3AA-TM'    'FRG1B'           [20]    [ 29628251]
    'SKCM-EE-A3AA-TM'    'CCDC28A'         [ 6]    [139097330]
    'SKCM-EE-A3AB-TM'    'Unknown'         [12]    [    92119]
    'SKCM-EE-A3AB-TM'    'LOC284232'       [13]    [ 19414170]
    'SKCM-EE-A3AC-TM'    'LOC441666'       [10]    [ 42832134]
    'SKCM-EE-A3AC-TM'    'XIRP2'           [ 2]    [168104863]
    'SKCM-EE-A3AC-TM'    'FRG1B'           [20]    [ 29628299]
    'SKCM-EE-A3AC-TM'    'HLA-A'           [ 6]    [ 29910693]
    'SKCM-EE-A3AD-TM'    'KIAA0907'        [ 1]    [155887393]
    'SKCM-EE-A3AD-TM'    'HSD17B7P2'       [10]    [ 38654432]
    'SKCM-EE-A3AD-TM'    'Unknown'         [15]    [102292820]
    'SKCM-EE-A3AD-TM'    'CLDN7'           [17]    [  7163815]
    'SKCM-EE-A3AD-TM'    'POTEC'           [18]    [ 14513675]
    'SKCM-EE-A3AD-TM'    'ZNF702P'         [19]    [ 53472914]
    'SKCM-EE-A3AE-TM'    'LOC650368'       [11]    [  3427845]
    'SKCM-EE-A3AE-TM'    'Unknown'         [16]    [ 70268158]
    'SKCM-EE-A3AE-TM'    'CDC27'           [17]    [ 45219678]
    'SKCM-EE-A3AE-TM'    'TBC1D3P2'        [17]    [ 60342280]
    'SKCM-EE-A3AE-TM'    'WASH2P'          [ 2]    [114355998]
    'SKCM-EE-A3AE-TM'    'CTBS'            [ 1]    [ 85040025]
    'SKCM-EE-A3AG-TM'    'INTS4'           [11]    [ 77614629]
    'SKCM-EE-A3AG-TM'    'LOC645752'       [15]    [ 78208916]
    'SKCM-EE-A3AG-TM'    'FRG1B'           [20]    [ 29625891]
    'SKCM-EE-A3AG-TM'    'FRG1B'           [20]    [ 29628251]
    'SKCM-EE-A3AG-TM'    'NUDT11'          [23]    [ 51239296]
    'SKCM-EE-A3AH-TM'    'NBPF10'          [ 1]    [145367767]
    'SKCM-EE-A3AH-TM'    'EP400'           [12]    [132547093]
    'SKCM-EE-A3AH-TM'    'GOLGA6L6'        [15]    [ 20743947]
    'SKCM-EE-A3AH-TM'    'LOC220729'       [ 3]    [197348674]
    'SKCM-EE-A3AH-TM'    'ASTN2'           [ 9]    [119625875]
    'SKCM-EE-A3AH-TM'    'CDC42EP1'        [22]    [ 37964409]
    'SKCM-EE-A3AH-TM'    'DND1'            [ 5]    [140052285]
    'SKCM-EE-A3AH-TM'    'SRPX'            [23]    [ 38079976]
    'SKCM-EE-A3J5-TM'    'SUZ12P'          [17]    [ 29061941]
    'SKCM-EE-A3J5-TM'    'KRTAP4-11'       [17]    [ 39274087]
    'SKCM-EE-A3J5-TM'    'SDHAP2'          [ 3]    [195410687]
    'SKCM-EE-A3J5-TM'    'Unknown'         [ 5]    [ 79655249]
    'SKCM-EE-A3J7-TM'    'Unknown'         [17]    [ 21731144]
    'SKCM-EE-A3J7-TM'    'MYT1'            [20]    [ 62839353]
    'SKCM-EE-A3J7-TM'    'LOC220729'       [ 3]    [197348646]
    'SKCM-EE-A3J7-TM'    'FNBP4'           [11]    [ 47788664]
    'SKCM-EE-A3J8-TM'    'Unknown'         [10]    [ 48968566]
    'SKCM-EE-A3J8-TM'    'FLJ36000'        [17]    [ 21904093]
    'SKCM-EE-A3J8-TM'    'KRTAP4-11'       [17]    [ 39274087]
    'SKCM-EE-A3J8-TM'    'TTN'             [ 2]    [179440352]
    'SKCM-EE-A3J8-TM'    'FAM182B'         [20]    [ 25848606]
    'SKCM-EE-A3J8-TM'    'PLXNA1'          [ 3]    [126707544]
    'SKCM-EE-A3JA-TM'    'EEF1A2'          [20]    [ 62120282]
    'SKCM-EE-A3JA-TM'    'MLLT3'           [ 9]    [ 20414340]
    'SKCM-EE-A3JA-TM'    'MMP12'           [11]    [102738795]
    'SKCM-EE-A3JB-TM'    'DCP1B'           [12]    [  2062350]
    'SKCM-EE-A3JD-TM'    'MST1P9'          [ 1]    [ 17085795]
    'SKCM-EE-A3JD-TM'    'GOLGA6L10'       [15]    [ 82635117]
    'SKCM-EE-A3JD-TM'    'Unknown'         [17]    [ 21731144]
    'SKCM-EE-A3JD-TM'    'Unknown'         [21]    [  9769119]
    'SKCM-EE-A3JD-TM'    'PRKDC'           [ 8]    [ 48866910]
    'SKCM-EE-A3JE-TM'    'LOC441666'       [10]    [ 42832122]
    'SKCM-EE-A3JE-TM'    'POTEC'           [18]    [ 14513675]
    'SKCM-EE-A3JE-TM'    'LYPLA2P1'        [ 6]    [ 33333333]
    'SKCM-EE-A3JE-TM'    'LYPLA2P1'        [ 6]    [ 33333342]
    'SKCM-EE-A3JE-TM'    'MLLT3'           [ 9]    [ 20414379]
    'SKCM-EE-A3JE-TM'    'CIZ1'            [ 9]    [130953109]
    'SKCM-EE-A3JH-TM'    'Unknown'         [17]    [ 39296152]
    'SKCM-EE-A3JH-TM'    'MUC4'            [ 3]    [195515025]
    'SKCM-EE-A3JI-TM'    'OR8I2'           [11]    [ 55861593]
    'SKCM-ER-A193-TM'    'Unknown'         [ 1]    [    13418]
    'SKCM-ER-A193-TM'    'MST1P2'          [ 1]    [ 16974277]
    'SKCM-ER-A193-TM'    'LOC653544'       [10]    [135491113]
    'SKCM-ER-A193-TM'    'FAM136B'         [ 6]    [  3045944]
    'SKCM-ER-A193-TM'    'HLA-A'           [ 6]    [ 29910549]
    'SKCM-ER-A195-TM'    'ZNF814'          [19]    [ 58385762]
    'SKCM-ER-A195-TM'    'MN1'             [22]    [ 28194933]
    'SKCM-ER-A197-TM'    'ADAM6'           [14]    [107062359]
    'SKCM-ER-A198-TM'    'SDHAP2'          [ 3]    [195410687]
    'SKCM-ER-A198-TM'    'SDHAP2'          [ 3]    [195410689]
    'SKCM-ER-A198-TM'    'SDHAP1'          [ 3]    [195698264]
    'SKCM-ER-A198-TM'    'TUBBP5'          [ 9]    [141071110]
    'SKCM-ER-A198-TM'    'ARL6IP4'         [12]    [123466293]
    'SKCM-ER-A198-TM'    'ZNF219'          [14]    [ 21560753]
    'SKCM-ER-A198-TM'    'POLDIP2'         [17]    [ 26684390]
    'SKCM-ER-A198-TM'    'STK39'           [ 2]    [169103872]
    'SKCM-ER-A198-TM'    'NUDT11'          [23]    [ 51239296]
    'SKCM-ER-A199-TM'    'MST1P2'          [ 1]    [ 16974686]
    'SKCM-ER-A199-TM'    'EP400'           [12]    [132547087]
    'SKCM-ER-A199-TM'    'EP400'           [12]    [132547093]
    'SKCM-ER-A199-TM'    'Unknown'         [15]    [ 82620400]
    'SKCM-ER-A199-TM'    'GPX1'            [ 3]    [ 49395482]
    'SKCM-ER-A199-TM'    'MUC20'           [ 3]    [195452664]
    'SKCM-ER-A199-TM'    'NUDT11'          [23]    [ 51239296]
    'SKCM-ER-A19A-TM'    'PARG'            [10]    [ 51093329]
    'SKCM-ER-A19A-TM'    'RYR3'            [15]    [ 33962623]
    'SKCM-ER-A19A-TM'    'LOC645752'       [15]    [ 78212571]
    'SKCM-ER-A19A-TM'    'Unknown'         [16]    [ 32070612]
    'SKCM-ER-A19A-TM'    'TBP'             [ 6]    [170871052]
    'SKCM-ER-A19A-TM'    'UBXN11'          [ 1]    [ 26608878]
    'SKCM-ER-A19A-TM'    'SSPO'            [ 7]    [149515189]
    'SKCM-ER-A19B-TM'    'DDX11'           [12]    [ 31237922]
    'SKCM-ER-A19B-TM'    'ZNF493'          [19]    [ 21606712]
    'SKCM-ER-A19B-TM'    'RGPD5'           [ 2]    [113127775]
    'SKCM-ER-A19B-TM'    'POLDIP2'         [17]    [ 26684394]
    'SKCM-ER-A19B-TM'    'FGFRL1'          [ 4]    [  1019055]
    'SKCM-ER-A19C-TM'    'RGPD5'           [ 2]    [113127775]
    'SKCM-ER-A19C-TM'    'POM121L9P'       [22]    [ 24659578]
    'SKCM-ER-A19C-TM'    'SPDYE7P'         [ 7]    [ 72339511]
    'SKCM-ER-A19C-TM'    'RBMY1A3P'        [24]    [  9160470]
    'SKCM-ER-A19C-TM'    'TMEM121'         [14]    [105996050]
    'SKCM-ER-A19C-TM'    'SYN2'            [ 3]    [ 12046124]
    'SKCM-ER-A19D-TM'    'LOC653544'       [10]    [135491107]
    'SKCM-ER-A19D-TM'    'LOC100288778'    [12]    [    88651]
    'SKCM-ER-A19D-TM'    'Unknown'         [16]    [ 70268158]
    'SKCM-ER-A19D-TM'    'SUZ12P'          [17]    [ 29061941]
    'SKCM-ER-A19D-TM'    'KIR2DS4'         [19]    [ 55354367]
    'SKCM-ER-A19D-TM'    'RP9'             [ 7]    [ 33139017]
    'SKCM-ER-A19E-TM'    'LOC374491'       [13]    [ 25161397]
    'SKCM-ER-A19E-TM'    'RYR3'            [15]    [ 33962623]
    'SKCM-ER-A19F-TM'    'Unknown'         [10]    [ 48968566]
    'SKCM-ER-A19F-TM'    'LOC374491'       [13]    [ 25161397]
    'SKCM-ER-A19F-TM'    'RPL23AP53'       [ 8]    [   163215]
    'SKCM-ER-A19F-TM'    'TUBBP5'          [ 9]    [141070139]
    'SKCM-ER-A19F-TM'    'DNAH12'          [ 3]    [ 57509312]
    'SKCM-ER-A19G-TM'    'Unknown'         [10]    [ 48968566]
    'SKCM-ER-A19G-TM'    'WASH2P'          [ 2]    [114355998]
    'SKCM-ER-A19G-TM'    'POM121L9P'       [22]    [ 24659578]
    'SKCM-ER-A19G-TM'    'MICALCL'         [11]    [ 12316384]
    'SKCM-ER-A19G-TM'    'FGFRL1'          [ 4]    [  1019055]
    'SKCM-ER-A19G-TM'    'SP8'             [ 7]    [ 20824941]
    'SKCM-ER-A19H-TM'    'KRTAP5-4'        [11]    [  1642817]
    'SKCM-ER-A19H-TM'    'CHEK2'           [22]    [ 29091840]
    'SKCM-ER-A19H-TM'    'HMGCLL1'         [ 6]    [ 55381350]
    'SKCM-ER-A19H-TM'    'NCF1B'           [ 7]    [ 72640036]
    'SKCM-ER-A19J-TM'    'Unknown'         [14]    [ 19857036]
    'SKCM-ER-A19J-TM'    'Unknown'         [15]    [ 82620400]
    'SKCM-ER-A19J-TM'    'WASH2P'          [ 2]    [114355998]
    'SKCM-ER-A19J-TM'    'SMARCA2'         [ 9]    [  2039776]
    'SKCM-ER-A19L-TM'    'NBPF10'          [ 1]    [145367739]
    'SKCM-ER-A19L-TM'    'KRTAP4-8'        [17]    [ 39254054]
    'SKCM-ER-A19L-TM'    'LOC220729'       [ 3]    [197348739]
    'SKCM-ER-A19N-TM'    'MST1P2'          [ 1]    [ 16974592]
    'SKCM-ER-A19N-TM'    'TTN'             [ 2]    [179585312]
    'SKCM-ER-A19N-TM'    'LOC642587'       [ 1]    [209605637]
    'SKCM-ER-A19N-TM'    'SNAPC4'          [ 9]    [139277995]
    'SKCM-ER-A19O-TM'    'HLA-DQB2'        [ 6]    [ 32726774]
    'SKCM-ER-A19O-TM'    'YY1'             [14]    [100705788]
    'SKCM-ER-A19O-TM'    'BOD1L'           [ 4]    [ 13582680]
    'SKCM-ER-A19P-TM'    'HSD17B7P2'       [10]    [ 38654432]
    'SKCM-ER-A19P-TM'    'LOC653544'       [10]    [135491123]
    'SKCM-ER-A19P-TM'    'Unknown'         [15]    [ 28599954]
    'SKCM-ER-A19P-TM'    'WASH3P'          [15]    [102515299]
    'SKCM-ER-A19P-TM'    'MYH8'            [17]    [ 10317756]
    'SKCM-ER-A19P-TM'    'ZNF702P'         [19]    [ 53472914]
    'SKCM-ER-A19P-TM'    'ANKRD20B'        [ 2]    [ 95522815]
    'SKCM-ER-A19P-TM'    'Unknown'         [ 2]    [ 96521777]
    'SKCM-ER-A19P-TM'    'LOC96610'        [22]    [ 22664186]
    'SKCM-ER-A19P-TM'    'SDHAP2'          [ 3]    [195400728]
    'SKCM-ER-A19P-TM'    'SDHAP2'          [ 3]    [195400795]
    'SKCM-ER-A19P-TM'    'SDHAP2'          [ 3]    [195400799]
    'SKCM-ER-A19P-TM'    'RNF145'          [ 5]    [158603839]
    'SKCM-ER-A19P-TM'    'PCMTD1'          [ 8]    [ 52732960]
    'SKCM-ER-A19P-TM'    'VENTXP7'         [ 3]    [ 21447901]
    'SKCM-ER-A19Q-TM'    'RRN3P1'          [16]    [ 21817457]
    'SKCM-ER-A19Q-TM'    'POM121L9P'       [22]    [ 24659578]
    'SKCM-ER-A19Q-TM'    'POM121L9P'       [22]    [ 24659591]
    'SKCM-ER-A19Q-TM'    'POM121L9P'       [22]    [ 24659593]
    'SKCM-ER-A19S-TM'    'CROCCL1'         [ 1]    [ 16946438]
    'SKCM-ER-A19S-TM'    'Unknown'         [16]    [ 28354353]
    'SKCM-ER-A19S-TM'    'MLLT3'           [ 9]    [ 20414340]
    'SKCM-ER-A19T-TM'    'LOC653544'       [10]    [135491107]
    'SKCM-ER-A19T-TM'    'KRTAP4-11'       [17]    [ 39274415]
    'SKCM-ER-A19T-TM'    'TSKU'            [11]    [ 76506673]
    'SKCM-ER-A19T-TM'    'NUDT11'          [23]    [ 51239296]
    'SKCM-ER-A1A1-TM'    'PRG4'            [ 1]    [186276100]
    'SKCM-ER-A1A1-TM'    'Unknown'         [15]    [ 76074470]
    'SKCM-ER-A1A1-TM'    'GKAP1'           [ 9]    [ 86354657]
    'SKCM-ER-A1A1-TM'    'PLCH2'           [ 1]    [  2430086]
    'SKCM-ER-A2NC-TM'    'Unknown'         [ 1]    [148882025]
    'SKCM-ER-A2ND-TM'    'Unknown'         [16]    [ 32070612]
    'SKCM-ER-A2ND-TM'    'ZNF493'          [19]    [ 21606712]
    'SKCM-ER-A2ND-TM'    'ZNF845'          [19]    [ 53856702]
    'SKCM-ER-A2ND-TM'    'ZNF845'          [19]    [ 53856730]
    'SKCM-ER-A2ND-TM'    'SRP19'           [ 5]    [112227939]
    'SKCM-ER-A2NE-TM'    'LOC650368'       [11]    [  3427845]
    'SKCM-ER-A2NE-TM'    'LOC374491'       [13]    [ 25161397]
    'SKCM-ER-A2NE-TM'    'AMZ2P1'          [17]    [ 62968690]
    'SKCM-ER-A2NE-TM'    'LOC442421'       [ 9]    [ 66499680]
    'SKCM-ER-A2NF-TM'    'LOC653544'       [10]    [135491100]
    'SKCM-ER-A2NG-TM'    'ADAM6'           [14]    [107062359]
    'SKCM-ER-A2NG-TM'    'UGT1A8'          [ 2]    [234526369]
    'SKCM-ER-A2NG-TM'    'C21orf99'        [21]    [ 14439208]
    'SKCM-ER-A2NG-TM'    'LOC96610'        [22]    [ 22664186]
    'SKCM-ER-A2NG-TM'    'CDC27'           [17]    [ 45247389]
    'SKCM-ER-A2NH-TM'    'Unknown'         [16]    [ 32070612]
    'SKCM-ER-A2NH-TM'    'C21orf99'        [21]    [ 14439208]
    'SKCM-ER-A3ES-TM'    'Unknown'         [10]    [ 48968566]
    'SKCM-ER-A3ES-TM'    'WASH3P'          [15]    [102515299]
    'SKCM-ER-A3ES-TM'    'RRN3P1'          [16]    [ 21817457]
    'SKCM-ER-A3ES-TM'    'Unknown'         [17]    [ 21730847]
    'SKCM-ER-A3ES-TM'    'POTEC'           [18]    [ 14513764]
    'SKCM-ER-A3ES-TM'    'RGPD3'           [ 2]    [107049631]
    'SKCM-ER-A3ET-TM'    'RPL13AP20'       [12]    [ 13028751]
    'SKCM-ER-A3ET-TM'    'KRTAP4-11'       [17]    [ 39274087]
    'SKCM-ER-A3ET-TM'    'EEF1B2'          [ 2]    [207025358]
    'SKCM-ER-A3ET-TM'    'EEF1B2'          [ 2]    [207025366]
    'SKCM-ER-A3ET-TM'    'GGT3P'           [22]    [ 18778612]
    'SKCM-ER-A3ET-TM'    'SH2D3C'          [ 9]    [130504196]
    'SKCM-ER-A3EV-TM'    'DDX11L2'         [ 2]    [114357557]
    'SKCM-ER-A3EV-TM'    'TTN'             [ 2]    [179440352]
    'SKCM-FS-A1YW-TM'    'LOC284232'       [13]    [ 19415742]
    'SKCM-FS-A1YW-TM'    'RPSAP58'         [19]    [ 24010294]
    'SKCM-FS-A1YW-TM'    'LOC100133050'    [ 5]    [ 99715528]
    'SKCM-FS-A1YW-TM'    'TUBBP5'          [ 9]    [141071110]
    'SKCM-FS-A1YW-TM'    'TUBBP5'          [ 9]    [141071340]
    'SKCM-FS-A1YX-TM'    'DDX11'           [12]    [ 31237922]
    'SKCM-FS-A1YX-TM'    'C21orf99'        [21]    [ 14439185]
    'SKCM-FS-A1YX-TM'    'C21orf99'        [21]    [ 14439208]
    'SKCM-FS-A1YY-TM'    'LOC650368'       [11]    [  3427845]
    'SKCM-FS-A1YY-TM'    'RRN3P3'          [16]    [ 22441236]
    'SKCM-FS-A1YY-TM'    'PNKP'            [19]    [ 50370414]
    'SKCM-FS-A1YY-TM'    'SNAPC4'          [ 9]    [139277995]
    'SKCM-FS-A1Z0-TM'    'NBPF1'           [ 1]    [ 16918653]
    'SKCM-FS-A1Z0-TM'    'Unknown'         [17]    [ 39296152]
    'SKCM-FS-A1Z0-TM'    'TTN'             [ 2]    [179598197]
    'SKCM-FS-A1Z3-TM'    'NBPF1'           [ 1]    [ 16918653]
    'SKCM-FS-A1Z4-TM'    'EP400'           [12]    [132547087]
    'SKCM-FS-A1Z4-TM'    'POLDIP2'         [17]    [ 26684390]
    'SKCM-FS-A1Z7-TM'    'LOC650368'       [11]    [  3427845]
    'SKCM-FS-A1Z7-TM'    'CRIPAK'          [ 4]    [  1388635]
    'SKCM-FS-A1Z7-TM'    'FLJ44082'        [ 9]    [ 84562902]
    'SKCM-FS-A1ZA-TM'    'LOC653544'       [10]    [135491107]
    'SKCM-FS-A1ZA-TM'    'MUM1'            [19]    [  1360408]
    'SKCM-FS-A1ZA-TM'    'WASH2P'          [ 2]    [114355998]
    'SKCM-FS-A1ZA-TM'    'CDC42EP1'        [22]    [ 37964409]
    'SKCM-FS-A1ZB-TM'    'POM121L9P'       [22]    [ 24659734]
    'SKCM-FS-A1ZB-TM'    'C9orf150'        [ 9]    [ 12775861]
    'SKCM-FS-A1ZC-TM'    'Unknown'         [12]    [    92119]
    'SKCM-FS-A1ZC-TM'    'C21orf99'        [21]    [ 14414902]
    'SKCM-FS-A1ZD-TM'    'LOC653544'       [10]    [135491112]
    'SKCM-FS-A1ZD-TM'    'CHD3'            [17]    [  7796803]
    'SKCM-FS-A1ZD-TM'    'PLXNA1'          [ 3]    [126707544]
    'SKCM-FS-A1ZD-TM'    'ST7'             [ 7]    [116869938]
    'SKCM-FS-A1ZE-TM'    'WASH3P'          [15]    [102515299]
    'SKCM-FS-A1ZE-TM'    'KRTAP9-4'        [17]    [ 39406130]
    'SKCM-FS-A1ZE-TM'    'ANKRD20B'        [ 2]    [ 95522727]
    'SKCM-FS-A1ZE-TM'    'ANKRD20B'        [ 2]    [ 95522772]
    'SKCM-FS-A1ZE-TM'    'ANKRD20B'        [ 2]    [ 95522786]
    'SKCM-FS-A1ZE-TM'    'GPR124'          [ 8]    [ 37690619]
    'SKCM-FS-A1ZF-TM'    'Unknown'         [10]    [ 49218553]
    'SKCM-FS-A1ZF-TM'    'CNTNAP2'         [ 7]    [147183114]
    'SKCM-FS-A1ZH-TM'    'WASH3P'          [15]    [102515299]
    'SKCM-FS-A1ZH-TM'    'UGT1A8'          [ 2]    [234526363]
    'SKCM-FS-A1ZH-TM'    'PLXNA1'          [ 3]    [126707544]
    'SKCM-FS-A1ZH-TM'    'FMN2'            [ 1]    [240255569]
    'SKCM-FS-A1ZH-TM'    'MESP2'           [15]    [ 90320121]
    'SKCM-FS-A1ZJ-TM'    'DCP1B'           [12]    [  2062350]
    'SKCM-FS-A1ZJ-TM'    'DDX12'           [12]    [  9580280]
    'SKCM-FS-A1ZK-TM'    'CDKN2A'          [ 9]    [ 21974720]
    'SKCM-FS-A1ZK-TM'    'CIZ1'            [ 9]    [130953109]
    'SKCM-FS-A1ZM-TM'    'LOC284232'       [13]    [ 19413025]
    'SKCM-FS-A1ZM-TM'    'HLA-A'           [ 6]    [ 29910607]
    'SKCM-FS-A1ZM-TM'    'SEPT7'           [ 7]    [ 35930362]
    'SKCM-FS-A1ZP-TM'    'FRMPD2'          [10]    [ 49379224]
    'SKCM-FS-A1ZP-TM'    'NOVA2'           [19]    [ 46476609]
    'SKCM-FS-A1ZP-TM'    'CAMSAP1'         [ 9]    [138715799]
    'SKCM-FS-A1ZQ-TM'    'ZAP70'           [ 2]    [ 98354284]
    'SKCM-FS-A1ZQ-TM'    'ZNF735'          [ 7]    [ 63680401]
    'SKCM-FS-A1ZQ-TM'    'NOTCH2'          [ 1]    [120612003]
    'SKCM-FS-A1ZR-TM'    'FLJ10661'        [ 8]    [  8092007]
    'SKCM-FS-A1ZR-TM'    'TNXB'            [ 6]    [ 32063513]
    'SKCM-FS-A1ZS-TM'    'DENND4B'         [ 1]    [153907303]
    'SKCM-FS-A1ZS-TM'    'EP400'           [12]    [132547087]
    'SKCM-FS-A1ZS-TM'    'KRTAP1-5'        [17]    [ 39183145]
    'SKCM-FS-A1ZS-TM'    'ANKRD32'         [ 5]    [ 94030836]
    'SKCM-FS-A1ZS-TM'    'LOC100133050'    [ 5]    [ 99715528]
    'SKCM-FS-A1ZT-TM'    'PARG'            [10]    [ 51093329]
    'SKCM-FS-A1ZT-TM'    'ARHGAP11B'       [15]    [ 30938440]
    'SKCM-FS-A1ZT-TM'    'Unknown'         [16]    [ 70268158]
    'SKCM-FS-A1ZT-TM'    'FLJ36000'        [17]    [ 21904193]
    'SKCM-FS-A1ZT-TM'    'FLJ36000'        [17]    [ 21904197]
    'SKCM-FS-A1ZT-TM'    'C21orf99'        [21]    [ 14414855]
    'SKCM-FS-A1ZT-TM'    'TUBBP5'          [ 9]    [141071110]
    'SKCM-FS-A1ZU-TM'    'NBPF10'          [ 1]    [145367739]
    'SKCM-FS-A1ZU-TM'    'LOC653544'       [10]    [135491085]
    'SKCM-FS-A1ZW-TM'    'C21orf99'        [21]    [ 14414855]
    'SKCM-FS-A1ZW-TM'    'SEPT7'           [ 7]    [ 35930362]
    'SKCM-FS-A1ZW-TM'    'AGAP4'           [10]    [ 46342668]
    'SKCM-FS-A1ZY-TM'    'NBPF1'           [ 1]    [ 16918653]
    'SKCM-FS-A1ZY-TM'    'LOC441666'       [10]    [ 42832499]
    'SKCM-FS-A1ZY-TM'    'FCGBP'           [19]    [ 40367841]
    'SKCM-FS-A1ZZ-TM'    'TNXB'            [ 6]    [ 32063513]
    'SKCM-FW-A3I3-TM'    'EEF1B2'          [ 2]    [207025358]
    'SKCM-FW-A3I3-TM'    'PTPN18'          [ 2]    [131129929]
    'SKCM-FW-A3I3-TM'    'MICAL3'          [22]    [ 18314825]
    'SKCM-GN-A261-TM'    'FRG1B'           [20]    [ 29628243]
    'SKCM-GN-A261-TM'    'FRG1B'           [20]    [ 29628245]
    'SKCM-GN-A262-TM'    'Unknown'         [ 1]    [    13418]
    'SKCM-GN-A262-TM'    'NBPF10'          [ 1]    [145367739]
    'SKCM-GN-A262-TM'    'MUC4'            [ 3]    [195505851]
    'SKCM-GN-A262-TM'    'POLDIP2'         [17]    [ 26684394]
    'SKCM-GN-A262-TM'    'STAG3L2'         [ 7]    [ 74300557]
    'SKCM-GN-A262-TM'    'NUDT11'          [23]    [ 51239296]
    'SKCM-GN-A264-TM'    'LOC284232'       [13]    [ 19415641]
    'SKCM-GN-A264-TM'    'ADAM6'           [14]    [107062359]
    'SKCM-GN-A264-TM'    'RYR3'            [15]    [ 33962623]
    'SKCM-GN-A264-TM'    'WASH3P'          [15]    [102515299]
    'SKCM-GN-A264-TM'    'RPL23AP53'       [ 8]    [   163215]
    'SKCM-GN-A264-TM'    'ZNF598'          [16]    [  2049882]
    'SKCM-GN-A264-TM'    'VENTXP7'         [ 3]    [ 21447901]
    'SKCM-GN-A265-TM'    'KRTAP4-11'       [17]    [ 39274087]
    'SKCM-GN-A265-TM'    'C6orf153'        [ 6]    [ 42989414]
    'SKCM-GN-A266-TM'    'DNAH9'           [17]    [ 11809055]
    'SKCM-GN-A266-TM'    'FBXO15'          [18]    [ 71740883]
    'SKCM-GN-A266-TM'    'DDX11L2'         [ 2]    [114357557]
    'SKCM-GN-A266-TM'    'HMGCLL1'         [ 6]    [ 55381350]
    'SKCM-GN-A266-TM'    'KCNN3'           [ 1]    [154842331]
    'SKCM-GN-A267-TM'    'LOC650368'       [11]    [  3427765]
    'SKCM-GN-A267-TM'    'DDX11'           [12]    [ 31237922]
    'SKCM-GN-A267-TM'    'OR7E24'          [19]    [  9361741]
    'SKCM-GN-A268-TM'    'ANKRD20B'        [ 2]    [ 95522786]
    'SKCM-GN-A268-TM'    'CTBS'            [ 1]    [ 85039999]
    'SKCM-GN-A268-TM'    'KCNN2'           [ 5]    [113698631]
    'SKCM-GN-A26A-TM'    'LOC653544'       [10]    [135491107]
    'SKCM-GN-A26A-TM'    'KRTAP4-7'        [17]    [ 39240908]
    'SKCM-GN-A26D-TM'    'MST1P9'          [ 1]    [ 17086183]
    'SKCM-GN-A26D-TM'    'ADAM6'           [14]    [107062360]
    'SKCM-GN-A26D-TM'    'ADAM6'           [14]    [107062402]
    'SKCM-GN-A26D-TM'    'FAM136B'         [ 6]    [  3045944]
    'SKCM-GN-A26D-TM'    'CDC27'           [17]    [ 45247389]

  Column 5

    'A'             
    'C'             
    'G'             
    'T'             
    'G'             
    '-'             
    'C'             
    'G'             
    'G'             
    '-'             
    'G'             
    '-'             
    'G'             
    'G'             
    'T'             
    '-'             
    'G'             
    'G'             
    'A'             
    'AGTAATACACGGCA'
    'T'             
    'T'             
    'G'             
    'C'             
    '-'             
    'C'             
    'T'             
    'G'             
    'G'             
    'G'             
    'C'             
    'A'             
    'C'             
    'A'             
    'G'             
    '-'             
    'A'             
    'G'             
    'C'             
    'G'             
    'C'             
    '-'             
    'A'             
    'G'             
    'G'             
    'C'             
    'C'             
    'G'             
    'G'             
    'C'             
    'C'             
    'G'             
    'T'             
    'C'             
    'G'             
    'C'             
    'G'             
    'G'             
    '-'             
    'G'             
    'C'             
    'C'             
    'C'             
    '-'             
    'A'             
    'A'             
    'A'             
    'G'             
    'T'             
    'C'             
    'G'             
    'A'             
    'G'             
    'A'             
    '-'             
    '-'             
    'G'             
    'G'             
    'G'             
    'G'             
    'G'             
    'A'             
    'C'             
    'C'             
    '-'             
    'C'             
    'C'             
    'T'             
    '-'             
    'A'             
    'T'             
    'CA'            
    'C'             
    '-'             
    'T'             
    'C'             
    'T'             
    'G'             
    '-'             
    'A'             
    'G'             
    'G'             
    '-'             
    'A'             
    'T'             
    'C'             
    'G'             
    'C'             
    'G'             
    'C'             
    'T'             
    'C'             
    'A'             
    'T'             
    'G'             
    'A'             
    'G'             
    'G'             
    'C'             
    '-'             
    'C'             
    'T'             
    '-'             
    '-'             
    '-'             
    'G'             
    'T'             
    'T'             
    'T'             
    'G'             
    'T'             
    'T'             
    'A'             
    'T'             
    'T'             
    'G'             
    '-'             
    'A'             
    '-'             
    'A'             
    'G'             
    'G'             
    'G'             
    'C'             
    'C'             
    '-'             
    '-'             
    'C'             
    'A'             
    'G'             
    'A'             
    'G'             
    'G'             
    'C'             
    'A'             
    'AGTAATACACGGCA'
    '-'             
    'T'             
    '-'             
    'G'             
    'C'             
    '-'             
    'C'             
    'G'             
    '-'             
    'A'             
    'A'             
    'G'             
    'G'             
    'T'             
    'GCC'           
    'G'             
    'AGTAATACACGGCA'
    'G'             
    'C'             
    'A'             
    'G'             
    'T'             
    'C'             
    'A'             
    '-'             
    'A'             
    'G'             
    'A'             
    'A'             
    '-'             
    'T'             
    'C'             
    'A'             
    'C'             
    'A'             
    'G'             
    'G'             
    'A'             
    'G'             
    'AGTAATACACGGCA'
    'T'             
    'G'             
    'T'             
    '-'             
    'T'             
    'A'             
    'G'             
    'T'             
    'G'             
    'G'             
    'A'             
    'T'             
    'C'             
    'A'             
    '-'             
    'A'             
    'A'             
    'A'             
    'GTGGGGGCC'     
    '-'             
    'A'             
    'C'             
    'C'             
    'T'             
    'G'             
    'G'             
    'C'             
    '-'             
    '-'             
    'C'             
    'A'             
    'T'             
    'AGC'           
    'T'             
    'A'             
    'G'             
    'G'             
    'G'             
    'A'             
    'C'             
    'G'             
    'C'             
    'A'             
    'A'             
    'T'             
    'C'             
    'C'             
    'G'             
    'G'             
    '-'             
    'T'             
    'G'             
    '-'             
    'C'             
    'G'             
    'C'             
    'C'             
    'G'             
    'T'             
    'A'             
    'T'             
    'G'             
    'G'             
    'AGTAATACACGGCA'
    '-'             
    'C'             
    'G'             
    'A'             
    'C'             
    'G'             
    'A'             
    'C'             
    'T'             
    'A'             
    'C'             
    'A'             
    '-'             
    'CC'            
    '-'             
    'G'             
    'C'             
    '-'             
    'C'             
    'C'             
    'G'             
    'T'             
    'T'             
    'T'             
    'GTG'           
    'C'             
    'G'             
    'T'             
    'G'             
    'A'             
    'G'             
    'G'             
    'T'             
    'A'             
    'G'             
    'G'             
    '-'             
    'T'             
    'G'             
    'G'             
    'C'             
    'C'             
    'G'             
    'G'             
    'G'             
    'T'             
    'G'             
    'A'             
    'C'             
    'G'             
    'A'             
    'G'             
    'G'             
    'C'             
    'C'             
    'T'             
    'A'             
    'T'             
    '-'             
    '-'             
    '-'             
    '-'             
    '-'             
    '-'             
    '-'             
    'A'             
    '-'             
    '-'             
    'A'             
    'C'             
    'G'             
    'A'             
    'A'             
    'G'             
    'C'             
    'G'             
    'A'             
    'C'             
    'G'             
    'TCC'           
    '-'             
    'C'             
    'T'             
    'C'             
    'G'             
    'C'             
    'G'             
    'CTG'           
    'A'             
    'G'             
    'A'             
    'C'             
    'C'             
    '-'             
    '-'             
    '-'             
    'A'             
    '-'             
    'T'             
    'G'             
    'T'             
    'G'             
    'T'             
    'G'             
    'C'             
    '-'             
    'CCG'           
    'A'             
    'GG'            
    'G'             
    'T'             
    'C'             
    'G'             
    'G'             
    'G'             
    'C'             
    'A'             
    'C'             
    'T'             
    '-'             
    'G'             
    'A'             
    'T'             
    'C'             
    'T'             
    '-'             
    '-'             
    'C'             
    'T'             
    'G'             
    'G'             
    'A'             
    'G'             
    'A'             
    'G'             
    'G'             
    '-'             
    '-'             
    'G'             
    '-'             
    'T'             
    'C'             
    'A'             
    'G'             
    'T'             
    '-'             
    'G'             
    'GGC'           
    'G'             
    'G'             
    'C'             
    'A'             
    'G'             
    'G'             
    'G'             
    'T'             
    'G'             
    'A'             
    '-'             
    'C'             
    '-'             
    '-'             
    '-'             
    'C'             
    'G'             
    'C'             
    'G'             
    'G'             
    'C'             
    '-'             
    'C'             
    '-'             
    'C'             
    'GGCGGCGGC'     
    'A'             
    'T'             
    'C'             
    'G'             
    'G'             
    '-'             
    '-'             
    'G'             
    '-'             
    '-'             
    'G'             
    '-'             
    'G'             
    'G'             
    'G'             
    'G'             
    'G'             
    'A'             
    'G'             
    'G'             
    '-'             
    'G'             
    'C'             
    '-'             
    'G'             
    'C'             
    'C'             
    'A'             
    'G'             
    'G'             
    'G'             
    '-'             
    'C'             
    'C'             
    'C'             
    'A'             
    'G'             
    'G'             
    'G'             
    'G'             
    'C'             
    'C'             
    'C'             
    'G'             
    'T'             
    'C'             
    'G'             
    'T'             
    'G'             
    '-'             
    'G'             
    'G'             
    'G'             
    'G'             
    '-'             
    'A'             
    'G'             
    'G'             
    'G'             
    'A'             
    '-'             
    '-'             
    '-'             
    'C'             
    'C'             
    'A'             
    'A'             
    'G'             
    'G'             
    'C'             
    '-'             
    'G'             
    'G'             
    'C'             
    'C'             
    'A'             
    'G'             
    'G'             
    'A'             
    'T'             
    'G'             
    'T'             
    'C'             
    'G'             
    'A'             
    '-'             
    'T'             
    'C'             
    'A'             
    'A'             
    'A'             
    '-'             
    'G'             
    'G'             
    'A'             
    'A'             
    'C'             
    'A'             
    'C'             
    'A'             
    'G'             
    'TGC'           
    'T'             
    'A'             
    'T'             
    'C'             
    'G'             
    '-'             
    '-'             
    'C'             
    '-'             
    '-'             
    'T'             
    'A'             
    'G'             
    'C'             
    'C'             
    '-'             
    '-'             
    'T'             
    'G'             
    'A'             
    'C'             
    'A'             
    '-'             
    '-'             
    'C'             
    'C'             
    'C'             
    'G'             
    '-'             
    'C'             
    'G'             
    'C'             
    'T'             
    '-'             
    '-'             
    'A'             
    'G'             
    'C'             
    'C'             
    'G'             
    'C'             
    'G'             
    'G'             
    'G'             
    'G'             
    'A'             
    'T'             
    'T'             
    'G'             
    'G'             
    'G'             
    '-'             
    '-'             
    '-'             
    'G'             
    'C'             
    'A'             
    'C'             
    'G'             
    'C'             
    'G'             
    'G'             
    'G'             
    'T'             
    'C'             
    'T'             
    'A'             
    '-'             
    '-'             
    'T'             
    '-'             
    'A'             
    'G'             
    'A'             
    'G'             
    'A'             
    'T'             
    'G'             
    'G'             
    'C'             
    'G'             
    'G'             
    'T'             
    'A'             
    'G'             
    'A'             
    'CC'            
    'A'             
    'G'             
    'G'             
    'T'             
    'A'             
    'G'             
    'A'             
    'A'             
    'T'             
    '-'             
    '-'             
    'C'             
    'G'             
    'C'             
    'GTGGGGGCC'     
    'T'             
    'C'             
    'C'             
    'A'             
    'A'             
    'C'             
    'T'             
    'G'             
    'G'             
    'A'             
    'A'             
    'T'             
    'G'             
    'G'             
    'G'             
    '-'             
    'C'             
    'G'             
    'G'             
    'A'             
    'A'             
    'T'             
    'T'             
    'T'             
    'C'             
    'C'             
    'G'             
    'A'             
    'T'             
    'T'             
    'G'             
    'C'             
    'C'             
    'G'             
    'T'             
    'G'             
    'A'             
    'C'             
    'A'             
    'G'             
    'T'             
    'A'             
    'G'             
    '-'             
    'T'             
    'G'             
    'T'             
    'T'             
    'A'             
    'C'             
    'T'             
    'C'             
    'T'             
    'A'             
    'T'             
    'G'             
    '-'             
    'C'             
    'GGCGGCGGC'     
    'C'             
    'A'             
    'A'             
    'C'             
    'G'             
    'C'             
    'A'             
    'A'             
    'A'             
    'C'             
    'C'             
    'C'             
    'C'             
    'G'             
    'A'             
    'G'             
    'G'             
    '-'             
    '-'             
    'G'             
    'G'             
    'C'             
    '-'             
    'G'             
    'C'             
    'C'             
    '-'             
    'G'             
    'T'             
    'C'             
    'TC'            
    '-'             
    'T'             
    '-'             
    'T'             
    'A'             
    'G'             
    'A'             
    'T'             
    'T'             
    'G'             
    'C'             
    'G'             
    'T'             
    'G'             
    'G'             
    'G'             
    'A'             
    'G'             
    'C'             
    '-'             
    'T'             
    'G'             
    'G'             
    '-'             
    'G'             
    '-'             
    '-'             
    'C'             
    'A'             
    'A'             
    'G'             
    'C'             
    'G'             
    '-'             
    '-'             
    'T'             
    'T'             
    'G'             
    'A'             
    'A'             
    'TCC'           
    'CC'            
    'C'             
    '-'             
    'T'             
    'A'             
    'G'             
    'A'             
    '-'             
    'C'             
    'C'             
    '-'             
    'C'             
    '-'             
    'GCC'           
    'A'             
    'C'             
    'G'             
    'G'             
    'C'             
    'C'             
    '-'             

Removing the following non-coding mutations (based on "type" field):
          RNA: [3204]
    ----TOTAL: [3204]
Not enforcing any target list.
Collapsing adjacent mutations:
convert_chr: assuming human for chrX/chrY
100000/168940 

    2 SNPs to one Complex_substitution (guessing "Missense"): [43]
                     2 SNPs to one DNP (guessing "Missense"): [3]
                                    2 SNPs/Indels to one DNP: [1]
                                                   ----TOTAL: [47]

Genes affected:
        ACRV1: [1]
         AGXT: [1]
         AHSG: [1]
       ARID5A: [1]
      CACNA1B: [1]
         CASR: [1]
      CCDC108: [1]
       CEP110: [1]
        CNGA2: [1]
         CPA3: [1]
         CPN1: [1]
          CR1: [1]
       DDX60L: [1]
        DSTYK: [1]
        EP400: [1]
       FBXO32: [1]
       FBXO43: [1]
         FCN2: [1]
         FIG4: [1]
         GIT2: [1]
          GSN: [1]
        HJURP: [1]
     HNRNPUL2: [1]
        ITGA4: [1]
        ITGB5: [1]
     KIAA1549: [1]
         KLC1: [1]
        MYO7B: [1]
          NES: [1]
        OBSCN: [1]
       OR2T34: [1]
      OSGEPL1: [1]
        PLCH1: [1]
       PLXNA4: [1]
        PTPN4: [1]
        RENBP: [1]
         RGL1: [1]
        SARDH: [1]
      SLC45A4: [1]
        SPRY3: [1]
         TET2: [1]
       TMEM44: [1]
       TROVE2: [1]
       ZCWPW1: [1]
       ZNF281: [1]
        NLRP3: [2]
    ----TOTAL: [47]

Patients affected:
    SKCM-D3-A2JF-TM: [1]
    SKCM-DA-A1HY-TM: [1]
    SKCM-DA-A1I2-TM: [1]
    SKCM-DA-A1I7-TM: [1]
    SKCM-DA-A1IC-TM: [1]
    SKCM-DA-A3F3-TM: [1]
    SKCM-EE-A20H-TM: [1]
    SKCM-EE-A29B-TM: [1]
    SKCM-EE-A29D-TM: [1]
    SKCM-EE-A29S-TM: [1]
    SKCM-EE-A2GC-TM: [1]
    SKCM-EE-A2GH-TM: [1]
    SKCM-EE-A2GL-TM: [1]
    SKCM-EE-A2GM-TM: [1]
    SKCM-EE-A2GP-TM: [1]
    SKCM-EE-A2MJ-TM: [1]
    SKCM-EE-A2MP-TM: [1]
    SKCM-EE-A2MU-TM: [1]
    SKCM-EE-A3AB-TM: [1]
    SKCM-EE-A3AF-TM: [1]
    SKCM-EE-A3AG-TM: [1]
    SKCM-EE-A3JD-TM: [1]
    SKCM-ER-A193-TM: [1]
    SKCM-ER-A19F-TM: [1]
    SKCM-ER-A19N-TM: [1]
    SKCM-FS-A1ZB-TM: [1]
    SKCM-FS-A1ZS-TM: [1]
    SKCM-GN-A267-TM: [1]
    SKCM-EE-A29E-TM: [2]
    SKCM-EE-A2GB-TM: [2]
    SKCM-EE-A2GI-TM: [2]
    SKCM-EE-A2M5-TM: [2]
    SKCM-EE-A2MD-TM: [2]
    SKCM-FS-A1ZZ-TM: [2]
    SKCM-EE-A2MR-TM: [3]
    SKCM-GN-A266-TM: [4]
          ----TOTAL: [47]
convert_chr: assuming human for chrX/chrY
100000/168893 
Collapsed 168940 muts to 168893 muts
Getting context: chr1 chr2 chr3 chr4 chr5 chr6 chr7 chr8 chr9 chr10 chr11 chr12 chr13 chr14 chr15 chr16 chr17 chr18 chr19 chr20 chr21 chr22 chr23 chr24 
Done.
Saved SKCM-TM.mutation_preprocessing_report.txt
HUGE STRUCT: SAVING CHUNK 1/2
  [save_struct] 57/113 58/113 59/113 60/113 61/113 62/113 63/113 64/113 65/113 66/113 67/113 68/113 69/113 70/113 71/113 72/113 73/113 74/113 75/113 76/113 77/113 78/113 79/113 80/113 81/113 82/113 83/113 84/113 85/113 86/113 87/113 88/113 89/113 90/113 91/113 92/113 93/113 94/113 95/113 96/113 97/113 98/113 99/113 100/113 101/113 102/113 103/113 104/113 105/113 106/113 107/113 108/113 109/113 110/113 111/113 112/113 113/113  [collapse]
HUGE STRUCT: SAVING CHUNK 2/2
  [save_struct] 71/113 72/113 73/113 74/113 75/113 76/113 77/113 78/113 79/113 80/113 81/113 82/113 83/113 84/113 85/113 86/113 87/113 88/113 89/113 90/113 91/113 92/113 93/113 94/113 95/113 96/113 97/113 98/113 99/113 100/113 101/113 102/113 103/113 104/113 105/113 106/113 107/113 108/113 109/113 110/113 111/113 112/113 113/113  [collapse]
Saved SKCM-TM.maf
Total of 225 patients had both MAF and WIG data.
Saved SKCM-TM.patients.txt
Saved SKCM-TM.coverage.prepare.txt
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigPreprocess.90.3705/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/286145
mFile: fh_MutSigPreprocess
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigPreprocess.90.3705/fh_MutSigPreprocess /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigPreprocess.90.3705/ -i SKCM-TM -b hg19 -t /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_hg19.txt -c /xchip/cga1/annotation/db/tracks/hg19/c65e -bd /xchip/cga1/annotation/db/ucsc/hg19 -cat 4 -maf1 /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/SKCM-TM/2284096/maf1.input.tsv -maflabel1 Broad -maflabel2 WashU -maflabel3 Baylor -wig1 /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/SKCM-TM/2284096/wig1.input.tsv -p /xchip/cga1/reference/mutsig_params/MutSig2.0_cga.pancan.blacklist.v7.hg19.params.txt
