Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	SKCM-TM.geneheatmap.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	SKCM-TM.geneheatmaptopgenes.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	SKCM-TM.silfig.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	SKCM-TM.cormatrix.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	SKCM-TM.bestclus.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	SKCM-TM.allclusters.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	SKCM-TM.subclassmarkers.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.6.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.5.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.3.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.7.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.3.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.4.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.2.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.7.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.8.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.6.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.8.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.2.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.5.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.4.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.8.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.6.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.2.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.7.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.5.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.3.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.4.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_selectBestcluster3.inputallexp	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	SKCM-TM.geneheatmap.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	SKCM-TM.geneheatmaptopgenes.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	SKCM-TM.silfig.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	SKCM-TM.cormatrix.png	MolecularSubtypes-Expression_mRNA	Level_4	png	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	SKCM-TM.bestclus.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	SKCM-TM.allclusters.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	SKCM-TM.subclassmarkers.txt	MolecularSubtypes-Expression_mRNA	Level_4	text	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.6.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.5.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.3.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.7.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.3.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.4.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.2.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.7.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.8.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.6.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.8.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.2.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.5.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.4.gct	ClusteringInput-Expression_mRNA	Level_4	gct	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.8.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.6.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.2.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.7.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.5.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.3.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	outputprefix.expclu.sub173.srt.4.gif	MolecularSubtypes-Expression_mRNA	Level_4	gif	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
GDAC_TopgenesforCluster1.expfile	SKCM-TM.miRseq_RPKM_log2.txt	gdac.broadinstitute.org_SKCM-TM.miRseq_Preprocess.Level_4.2012122100.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00445:30	miRseq_Clustering_Consensus_2012122100	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_SKCM-TM.miRseq_Clustering_Consensus.Level_4.2012122100.0.0	yes
