ClinicalAnalysisAllGenes_new1 data file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MethylationPreprocess/THCA-TP/2284229/0.GDAC_MethylationPreprocess.Finished/THCA-TP.meth.for_correlation.filtered_data.txt |
ClinicalAnalysisAllGenes_new1 clinical file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/THCA-TP/2174352/1.GDAC_clinicalDataPicker.Finished/THCA-TP.clin.merged.picked.txt |
ClinicalAnalysisAllGenesReport_nozzle2 cutoff p | 1 |
ClinicalAnalysisAllGenesReport_nozzle2 cutoff fdr | 0.05 |
ClinicalAnalysisAllGenesReport_nozzle2 max table rows | 10 |
ClinicalAnalysisAllGenesReport_nozzle2 nozzle ver | Nozzle.R1 |
ClinicalAnalysisAllGenesReport_nozzle2 options | METHYLATION |
Execution Times: | |
Submitted: | 17:22:09 10-01-13 |
Completed: | |
Elapsed: | 00 hrs 06 mins 52 secs |
step 1. ClinicalAnalysisAllGenes_new [id: 286602] Associate individual gene expression profiles to clinical parameters by survival test, t-test, correlation test, or ANOVA test
urn:lsid:broadinstitute.org:cancer.genome.analysis:00333:14
data file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MethylationPreprocess/THCA-TP/2284229/0.GDAC_MethylationPreprocess.Finished/THCA-TP.meth.for_correlation.filtered_data.txt |
clinical file | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/THCA-TP/2174352/1.GDAC_clinicalDataPicker.Finished/THCA-TP.clin.merged.picked.txt |
genes filtered by list | |
genes filtered by variance | ALL |
samples filtered by list | |
features used | ALL |
output name | |
job description |
Execution Times: | |
Submitted: | 17:22:17 10-01-13 |
Completed: | 17:28:28 10-01-13 |
Elapsed: | 00 hrs 06 mins 11 secs |
step 2. ClinicalAnalysisAllGenesReport_nozzle [id: 286603] Generate a report to summarize the results from ClinicalAnalysisAllGenes module
urn:lsid:broadinstitute.org:cancer.genome.analysis:00334:29
all result file | THCA-TP.meth.for_correlation.filtered_data.clinical.results.txt |
RData file | THCA-TP.meth.for_correlation.filtered_data.analysis.results.RData |
expression file | THCA-TP.meth.for_correlation.filtered_data.exprdata.gct |
clinical file | THCA-TP.clin.merged.picked.clindata.txt |
cutoff p | 1 |
cutoff fdr | 0.05 |
max table rows | 10 |
nozzle ver | Nozzle.R1 |
options | METHYLATION |
report title | |
job description |
Execution Times: | |
Submitted: | 17:22:17 10-01-13 |
Completed: | 17:29:00 10-01-13 |
Elapsed: | 00 hrs 06 mins 43 secs |