Clinical Features Time to Death AGE GENDER PATHOLOGY.T PATHOLOGY.N TUMOR.STAGE RADIATIONS.RADIATION.REGIMENINDICATION NUMBERPACKYEARSSMOKED STOPPEDSMOKINGYEAR TOBACCOSMOKINGHISTORYINDICATOR YEAROFTOBACCOSMOKINGONSET nCNV (%) nWild-Type logrank test_P logrank test_Q t-test_P t-test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q t-test_P t-test_Q t-test_P t-test_Q Fisher's exact test_P Fisher's exact test_Q t-test_P t-test_Q 1p gain 11 (4%) 294 0.78156 1 0.54637 1 0.077248 1 0.34895 1 0.74682 1 0.88814 1 0.73727 1 0.42636 1 0.11048 1 0.018322 1 0.88533 1 1q gain 38 (12%) 267 0.84325 1 0.691 1 0.56328 1 0.13423 1 0.015393 1 0.092949 1 0.16417 1 0.96032 1 0.22455 1 0.48028 1 0.93951 1 2p gain 30 (10%) 275 0.71964 1 0.9197 1 0.39485 1 0.87209 1 0.79611 1 0.54216 1 0.65801 1 0.018994 1 0.31458 1 0.14776 1 0.83389 1 2q gain 20 (7%) 285 0.7903 1 0.91447 1 0.60598 1 0.83181 1 0.86813 1 0.95225 1 1 1 0.083785 1 0.066456 1 0.055825 1 0.61507 1 3p gain 27 (9%) 278 0.27629 1 0.52353 1 0.3679 1 0.87242 1 0.65427 1 0.91877 1 0.64102 1 0.092768 1 0.18567 1 0.12744 1 0.33132 1 3q gain 102 (33%) 203 0.38705 1 0.3146 1 0.058126 1 0.83377 1 0.63667 1 0.24938 1 0.0047679 1 0.16184 1 0.45351 1 0.98293 1 0.81429 1 4p gain 13 (4%) 292 0.65723 1 0.11291 1 0.75765 1 0.85839 1 0.57399 1 0.41017 1 0.32228 1 0.55551 1 0.14299 1 0.80997 1 0.9899 1 4q gain 9 (3%) 296 0.55789 1 0.78524 1 1 1 0.22563 1 0.58107 1 0.4135 1 1 1 0.61394 1 0.13519 1 0.34016 1 0.50977 1 5p gain 76 (25%) 229 0.60259 1 0.3627 1 0.10252 1 0.97145 1 0.95445 1 0.58625 1 0.36104 1 0.28531 1 0.51492 1 0.51667 1 0.20569 1 5q gain 28 (9%) 277 0.59745 1 0.93571 1 0.51349 1 0.7268 1 0.86985 1 0.080082 1 0.36316 1 0.10057 1 0.5462 1 0.85158 1 0.74155 1 6p gain 26 (9%) 279 0.46596 1 0.105 1 1 1 0.80377 1 0.42811 1 0.55367 1 0.033296 1 0.58619 1 0.47909 1 0.76555 1 0.55118 1 6q gain 19 (6%) 286 0.67847 1 0.41274 1 0.79106 1 0.31225 1 0.25125 1 0.14407 1 0.051985 1 0.7917 1 0.98782 1 0.95685 1 0.36935 1 7p gain 70 (23%) 235 0.30341 1 0.066051 1 0.36247 1 0.81412 1 0.92248 1 0.84235 1 0.87556 1 0.32502 1 0.4455 1 0.73098 1 0.86473 1 7q gain 44 (14%) 261 0.27205 1 0.7492 1 0.58428 1 0.5253 1 0.46288 1 0.53546 1 0.70803 1 0.082455 1 0.41073 1 0.73221 1 0.29255 1 8p gain 47 (15%) 258 0.018814 1 0.68028 1 0.21359 1 0.24515 1 0.48932 1 0.54318 1 0.58724 1 0.79693 1 0.014427 1 0.036988 1 0.84839 1 8q gain 129 (42%) 176 0.097202 1 0.077004 1 0.89767 1 0.13606 1 0.34656 1 0.37813 1 0.78999 1 0.6765 1 0.11966 1 0.084385 1 0.31159 1 9p gain 37 (12%) 268 0.30593 1 0.21596 1 0.16833 1 0.88458 1 0.21238 1 0.53875 1 0.69022 1 0.14535 1 0.65653 1 0.20612 1 0.72175 1 9q gain 44 (14%) 261 0.46442 1 0.1178 1 0.7192 1 0.4041 1 0.81604 1 0.58438 1 0.45396 1 0.51065 1 0.53374 1 0.14192 1 0.31526 1 10p gain 13 (4%) 292 0.97567 1 0.99597 1 0.52615 1 0.81411 1 0.28801 1 0.96066 1 0.74296 1 0.19153 1 0.55166 1 0.53853 1 0.30151 1 10q gain 7 (2%) 298 0.10108 1 0.90282 1 0.67806 1 0.30634 1 0.66649 1 0.37174 1 0.067519 1 0.25337 1 0.58429 1 0.87225 1 0.57406 1 11p gain 16 (5%) 289 0.66437 1 0.17055 1 1 1 0.16238 1 0.47811 1 0.29241 1 0.55706 1 0.96221 1 0.033971 1 0.36122 1 0.72256 1 11q gain 16 (5%) 289 0.7387 1 0.21589 1 0.39165 1 0.63026 1 0.93169 1 0.48369 1 0.55706 1 0.90687 1 0.0085291 1 0.032352 1 0.87605 1 12p gain 60 (20%) 245 0.18782 1 0.3624 1 0.19645 1 0.5372 1 0.66117 1 0.91927 1 0.4056 1 0.30604 1 0.24427 1 0.44577 1 0.70427 1 12q gain 25 (8%) 280 0.26432 1 0.96115 1 0.099556 1 0.84995 1 0.77853 1 0.697 1 0.46842 1 0.22499 1 0.63869 1 0.08289 1 0.27179 1 13q gain 17 (6%) 288 0.69963 1 0.93395 1 0.78757 1 0.46784 1 0.066898 1 0.27796 1 1 1 0.5217 1 0.55887 1 0.72715 1 0.80456 1 14q gain 51 (17%) 254 0.81443 1 0.90724 1 0.30796 1 1 1 0.34433 1 0.57997 1 0.21742 1 0.17572 1 0.0075754 1 0.42184 1 0.61769 1 15q gain 13 (4%) 292 0.84485 1 0.78897 1 0.75765 1 0.053499 1 0.69267 1 0.25135 1 0.19724 1 0.19803 1 0.32635 1 0.54013 1 0.1285 1 16p gain 21 (7%) 284 0.69016 1 0.0040018 1 0.80438 1 0.95205 1 0.017947 1 0.27457 1 0.61123 1 0.73116 1 0.67407 1 0.55168 1 0.35641 1 16q gain 25 (8%) 280 0.83383 1 0.142 1 1 1 0.70818 1 0.10174 1 0.49882 1 1 1 0.40711 1 0.67011 1 0.71899 1 0.8428 1 17p gain 18 (6%) 287 0.70623 1 0.78115 1 0.17112 1 0.23844 1 0.81625 1 0.32066 1 0.78096 1 0.84916 1 0.13713 1 0.56317 1 0.26663 1 17q gain 20 (7%) 285 0.98784 1 0.79051 1 0.29943 1 0.010517 1 0.12142 1 0.096781 1 1 1 0.34912 1 0.78656 1 0.026383 1 0.70003 1 18p gain 51 (17%) 254 0.21851 1 0.43091 1 0.00026336 0.228 0.0064427 1 0.53071 1 0.034875 1 0.3799 1 0.19547 1 0.27163 1 0.36328 1 0.77502 1 18q gain 20 (7%) 285 0.043728 1 0.73773 1 0.074744 1 0.7264 1 0.71694 1 0.85528 1 1 1 0.369 1 0.51925 1 0.2643 1 0.47164 1 19p gain 11 (4%) 294 0.033684 1 0.1628 1 1 1 0.39961 1 0.64299 1 0.46069 1 1 1 0.827 1 0.89276 1 0.6791 1 0.56925 1 19q gain 21 (7%) 284 0.22664 1 0.66463 1 0.80438 1 0.10806 1 0.24115 1 0.31738 1 0.61123 1 0.73667 1 0.10636 1 0.26573 1 0.82033 1 20p gain 63 (21%) 242 0.12258 1 0.19005 1 0.52806 1 0.50472 1 0.20351 1 0.26733 1 0.0088496 1 0.25862 1 0.13239 1 0.43258 1 0.97731 1 20q gain 68 (22%) 237 0.53937 1 0.026101 1 0.16718 1 0.50254 1 0.42706 1 0.58625 1 0.0064392 1 0.44088 1 0.1321 1 0.28742 1 0.46682 1 21q gain 8 (3%) 297 0.92 1 0.080485 1 1 1 0.91158 1 0.86557 1 0.4731 1 1 1 0.93997 1 0.99842 1 0.0039044 1 0.44703 1 22q gain 39 (13%) 266 0.49182 1 0.16647 1 0.34168 1 0.90722 1 0.21876 1 0.93301 1 0.84553 1 0.065509 1 0.25896 1 0.55128 1 0.32076 1 Xq gain 22 (7%) 283 0.063151 1 0.55034 1 0.80489 1 0.72965 1 0.16938 1 0.97395 1 0.61071 1 0.14219 1 0.044134 1 0.92778 1 0.69962 1 1p loss 16 (5%) 289 0.23147 1 0.10136 1 0.56999 1 0.013328 1 0.38807 1 0.30375 1 0.24134 1 0.0056699 1 0.011558 1 0.067465 1 0.52136 1 2p loss 6 (2%) 299 0.20402 1 0.9696 1 0.66864 1 0.52189 1 1 1 0.6754 1 0.64129 1 0.82191 1 0.015792 1 0.23341 1 0.85493 1 2q loss 10 (3%) 295 0.17396 1 0.69347 1 1 1 0.27175 1 0.44389 1 0.14205 1 0.46044 1 0.088085 1 0.57279 1 0.40929 1 0.84153 1 3p loss 117 (38%) 188 0.0048889 1 0.91797 1 0.0082379 1 0.37571 1 0.025786 1 0.75997 1 1 1 0.021288 1 0.55927 1 0.16779 1 0.032631 1 3q loss 21 (7%) 284 0.27213 1 0.39625 1 0.20862 1 0.36289 1 0.14366 1 0.27915 1 0.79373 1 0.7188 1 0.047485 1 0.42597 1 0.21721 1 4p loss 73 (24%) 232 0.11818 1 0.39168 1 0.23347 1 0.32246 1 0.59674 1 0.18904 1 1 1 0.070044 1 0.0021728 1 0.00030927 0.268 0.4117 1 4q loss 50 (16%) 255 0.94404 1 0.64839 1 0.8638 1 0.25859 1 0.62195 1 0.43662 1 0.59385 1 0.20535 1 0.061739 1 0.42606 1 0.62365 1 5p loss 9 (3%) 296 0.45118 1 0.097625 1 0.26605 1 0.85839 1 0.90635 1 0.60408 1 0.11859 1 0.75981 1 0.55874 1 0.42987 1 0.22048 1 5q loss 62 (20%) 243 0.28064 1 0.11095 1 0.42581 1 0.28026 1 0.59592 1 0.32995 1 1 1 0.0058445 1 0.99622 1 0.078358 1 0.80872 1 6p loss 19 (6%) 286 0.33569 1 0.67522 1 0.29733 1 0.0014313 1 0.6141 1 0.12495 1 0.58334 1 0.23645 1 0.30763 1 0.13668 1 0.95387 1 6q loss 21 (7%) 284 0.79386 1 0.16715 1 0.45513 1 0.017831 1 0.56666 1 0.23287 1 1 1 0.82466 1 0.47207 1 0.63731 1 0.78399 1 7p loss 5 (2%) 300 0.77958 1 0.49515 1 1 1 0.71176 1 1 1 1 1 1 1 0.23765 1 0.16029 1 0.032577 1 0.83234 1 7q loss 9 (3%) 296 0.84043 1 0.80659 1 0.71042 1 0.27679 1 0.58107 1 0.77804 1 0.45939 1 0.43661 1 0.54921 1 0.8293 1 0.94283 1 8p loss 62 (20%) 243 0.032374 1 0.76278 1 0.75262 1 0.012385 1 0.90362 1 0.14376 1 0.62358 1 0.064597 1 0.71595 1 0.84282 1 0.97642 1 8q loss 7 (2%) 298 0.24413 1 0.71301 1 0.67806 1 1 1 0.33854 1 0.6754 1 1 1 0.081642 1 NA NA 0.45659 1 0.46912 1 9p loss 84 (28%) 221 0.33142 1 0.31231 1 0.25429 1 0.81793 1 0.94871 1 0.53516 1 1 1 0.0083147 1 0.015802 1 0.015272 1 0.89586 1 9q loss 29 (10%) 276 0.42202 1 0.31094 1 1 1 0.89353 1 0.8041 1 0.30531 1 0.82149 1 0.083562 1 0.73672 1 0.20899 1 0.60757 1 10p loss 44 (14%) 261 0.26898 1 0.34621 1 0.28033 1 0.062761 1 0.58698 1 0.50394 1 1 1 0.077612 1 0.30265 1 0.35856 1 0.79128 1 10q loss 25 (8%) 280 0.38449 1 0.59261 1 0.099556 1 0.30453 1 0.80343 1 0.3714 1 0.80932 1 0.51538 1 0.45048 1 0.26519 1 0.17552 1 11p loss 38 (12%) 267 0.36838 1 0.92968 1 0.43832 1 0.77999 1 0.032668 1 0.1237 1 0.5503 1 0.33889 1 0.022044 1 0.067532 1 0.78879 1 11q loss 58 (19%) 247 0.76292 1 0.43743 1 0.02263 1 1 1 0.28147 1 0.53296 1 0.041767 1 0.6922 1 0.83544 1 0.61616 1 0.30804 1 12p loss 11 (4%) 294 0.1248 1 0.0096893 1 0.30041 1 0.067958 1 0.029259 1 0.12465 1 0.031186 1 0.12871 1 0.63577 1 0.48428 1 0.0067598 1 12q loss 8 (3%) 297 0.64483 1 0.4065 1 0.45264 1 1 1 0.25738 1 1 1 0.41625 1 0.62413 1 NA NA 0.47839 1 0.42706 1 13q loss 60 (20%) 245 0.70629 1 0.52741 1 0.036786 1 0.60091 1 0.71784 1 0.31981 1 0.61816 1 0.09283 1 0.42373 1 0.11126 1 0.34353 1 14q loss 14 (5%) 291 0.71123 1 0.99682 1 0.36423 1 0.23151 1 0.72346 1 0.28872 1 0.34904 1 0.66452 1 0.60301 1 0.92913 1 0.61915 1 15q loss 23 (8%) 282 0.56101 1 0.60061 1 1 1 0.83071 1 0.45591 1 0.59225 1 1 1 0.86103 1 0.0012364 1 0.50247 1 0.76652 1 16p loss 10 (3%) 295 0.26722 1 0.57371 1 0.73259 1 0.58627 1 0.39041 1 0.81236 1 1 1 0.40142 1 0.34932 1 0.063434 1 0.13489 1 16q loss 23 (8%) 282 0.30676 1 0.92725 1 0.14468 1 0.74368 1 0.87354 1 0.55153 1 0.46215 1 0.43468 1 0.72399 1 0.38651 1 0.42594 1 17p loss 43 (14%) 262 0.54412 1 0.053407 1 0.096515 1 0.1735 1 0.74032 1 0.10123 1 0.34682 1 0.28944 1 0.32242 1 0.30017 1 0.32831 1 17q loss 5 (2%) 300 0.70332 1 0.52818 1 0.32757 1 1 1 0.40416 1 0.43142 1 0.10091 1 0.34483 1 0.002245 1 0.50271 1 0.66597 1 18p loss 28 (9%) 277 0.69909 1 0.53519 1 0.6572 1 0.84712 1 0.42354 1 1 1 0.64914 1 0.72655 1 0.1935 1 0.77729 1 0.31755 1 18q loss 82 (27%) 223 0.076912 1 0.044822 1 0.31618 1 0.75459 1 0.35328 1 0.70752 1 0.88191 1 0.17506 1 0.0028014 1 0.10402 1 0.21023 1 19p loss 26 (9%) 279 0.0099964 1 0.7427 1 0.019821 1 0.16987 1 0.10582 1 0.075667 1 0.63702 1 0.14452 1 0.42103 1 0.36427 1 0.10515 1 19q loss 19 (6%) 286 0.056739 1 0.49016 1 0.11216 1 0.0075801 1 0.13032 1 0.02192 1 1 1 0.16399 1 0.0014612 1 0.034142 1 0.55359 1 20p loss 21 (7%) 284 0.70472 1 0.1175 1 0.20862 1 0.53626 1 0.29364 1 0.48599 1 0.61123 1 0.67667 1 0.29832 1 0.27764 1 0.21887 1 20q loss 10 (3%) 295 0.26052 1 0.50784 1 0.06699 1 0.29344 1 0.73388 1 0.76639 1 1 1 0.54396 1 0.96974 1 0.69476 1 0.45916 1 21q loss 53 (17%) 252 0.7502 1 0.079651 1 0.063796 1 0.3458 1 0.0099388 1 1 1 1 1 0.095044 1 0.18099 1 0.92697 1 0.65912 1 22q loss 24 (8%) 281 0.17209 1 0.95666 1 0.24491 1 0.46773 1 0.16568 1 0.25862 1 0.807 1 0.34094 1 0.71872 1 0.62285 1 0.49024 1 Xq loss 9 (3%) 296 0.54069 1 0.82763 1 0.12109 1 0.3404 1 0.090714 1 0.040717 1 0.69531 1 0.38105 1 0.31265 1 0.54722 1 0.61866 1