
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.75.4002/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.75.4002/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/BLCA-TP/2403853/1.GDAC_mergedClustering.Finished/BLCA-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/BLCA-TP/2328320/1.GDAC_clinicalDataPicker.Finished/BLCA-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=117, in cluster file=154, common to both=117
[1]   8 117
[1] "CN_CNMF"
[1] 3
 1  2  3 
26 55 33 
 1  2  3 
26 55 33 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3  4 
29 37 32 19 
 1  2  3  4 
29 37 32 19 
[1] "RPPA_CNMF"
[1] 3
 1  2  3  4 
12 10 14 17 
 1  2  3  4 
12 10 14 17 
[1] "RPPA_CHIERARCHICAL"
[1] 3
 1  2  3 
14 17 22 
 1  2  3 
14 17 22 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3  4 
37 18 25 10 
 1  2  3  4 
37 18 25 10 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
25 44 21 
 1  2  3 
25 44 21 
[1] "MIRSEQ_CNMF"
[1] 3
 1  2  3 
24 57 29 
 1  2  3 
24 57 29 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
23 75 12 
 1  2  3 
23 75 12 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "RADIATIONTHERAPY"                      
[11] "KARNOFSKYPERFORMANCESCORE"             
[12] "RADIATIONS.RADIATION.REGIMENINDICATION"
[13] "NUMBERPACKYEARSSMOKED"                 
[14] "STOPPEDSMOKINGYEAR"                    
[15] "TOBACCOSMOKINGHISTORYINDICATOR"        
[16] "BATCHNUMBER"                           

Input Data has 16 rows and 117 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
         389           NA           NA           NA           NA          363 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
          NA           NA           NA           NA           NA           NA 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
          NA           NA           NA           NA           NA          179 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F1 TCGA-C4-A0F6 
         111           NA           NA           59           88           61 
TCGA-C4-A0F7 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A3MF TCGA-CF-A3MG 
          NA           14           13           21           NA           NA 
TCGA-CF-A3MH TCGA-CF-A3MI TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
          NA           NA           NA           NA          219          166 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
         158          246           77           NA          955          273 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
         214          271         3616         3056          218          178 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK 
         202           55          322           NA         2291           67 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV 
         121          238          319         1151          168           NA 
TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
        1108          268          253           NA          209           NA 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SN 
         336          272          242          974          334          207 
TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FT-A3EE 
          NA          138           NA           NA           59           71 
TCGA-G2-A2EC TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
         417         1884          806          172           NA          997 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 
         525          214           NA           25           87           68 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS 
          40          137           42           31           76           33 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW 
         234           64           95          177          133          160 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QG TCGA-GV-A3QH TCGA-GV-A3QI 
         187          173          232           NA          237          125 
TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-HQ-A2OE 
         202          194          162           46          204           NA 
TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
         265          104          141 
Variable 1:'AGE':	nDistinctValues=43,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=29,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=79,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=12,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 12:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 13:'NUMBERPACKYEARSSMOKED':	nDistinctValues=32,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 14:'STOPPEDSMOKINGYEAR':	nDistinctValues=33,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TOBACCOSMOKINGHISTORYINDICATOR':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=20,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                            "GENDER"                        
[3] "KARNOFSKY.PERFORMANCE.SCORE"    "NUMBERPACKYEARSSMOKED"         
[5] "STOPPEDSMOKINGYEAR"             "TOBACCOSMOKINGHISTORYINDICATOR"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 117 columns, 1 survival variables, and 6 non-survival variables.
AGE, nv=43, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=7, binary=FALSE, numeric=TRUE
NUMBERPACKYEARSSMOKED, nv=32, binary=FALSE, numeric=TRUE
STOPPEDSMOKINGYEAR, nv=33, binary=FALSE, numeric=TRUE
TOBACCOSMOKINGHISTORYINDICATOR, nv=5, binary=FALSE, numeric=TRUE

Clustering(1) Variable = CN_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 19  6
  subtype2 35 16
  subtype3 25  7
subtype1 subtype2 subtype3 
      25       51       32 
subtype1 subtype2 subtype3 
       6       16        7 
$subtype1
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A20N TCGA-BT-A20V TCGA-BT-A3PH TCGA-CU-A0YR 
       12.79         2.66        26.10         5.06         4.64         7.20 
TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A2I1 TCGA-DK-A2I6 
        5.46         2.14        31.40         8.98        10.59        75.32 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3RD TCGA-GD-A3OS 
        2.20         3.98        20.12         0.82         1.02         5.82 
TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HQ 
        5.26         5.69         7.63         7.79         4.11         6.71 
TCGA-K4-A3WV 
        4.64 

$subtype2
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O 
        7.33         6.74         6.58        11.93        19.00        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20X TCGA-C4-A0F0 
       17.85        19.46        14.89         8.61         8.25         1.94 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A3YL TCGA-DK-A1AA 
        2.01         0.46         0.69         4.90         8.09         7.04 
TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I2 TCGA-DK-A3IQ 
        8.91         7.17         5.85         6.64         7.76        10.49 
TCGA-DK-A3IS TCGA-E5-A2PC TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 
       37.84        36.43         8.94         4.01        11.05         7.96 
TCGA-FD-A3NA TCGA-FD-A3SN TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-G2-A2EJ TCGA-G2-A2EK 
       32.02         6.81         4.54        46.78        26.50         5.65 
TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-GC-A3BM TCGA-GC-A3I6 
       26.93        32.78        17.26         7.04         2.86         2.24 
TCGA-GC-A3OO TCGA-GC-A3WC TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GV-A3JV TCGA-GV-A3QK 
        1.32         2.50         2.10         3.12         4.37         6.64 
TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU 
        1.51         8.71         3.42 

$subtype3
TCGA-BT-A20R TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-CF-A1HS 
        5.06         8.35         5.88         3.65         8.98         0.43 
TCGA-CU-A0YN TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A2HX 
       12.92         5.19         2.53       118.88       100.47         1.81 
TCGA-DK-A3IM TCGA-DK-A3IT TCGA-DK-A3IV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 
        7.82         5.52         9.67         8.81         8.32         6.87 
TCGA-FD-A3N5 TCGA-FD-A3SL TCGA-FD-A3SO TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FT-A3EE 
        8.94        10.98         5.49        19.79         1.94         2.33 
TCGA-G2-A2EF TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GV-A3JX 
       61.94         4.50         1.38         1.08         7.69         6.15 
TCGA-GV-A40E TCGA-GV-A40G 
        6.38         5.33 

subtype1 subtype2 subtype3 
    0.82     0.46     0.43 
subtype1 subtype2 subtype3 
   75.32    46.78   118.88 
subtype1 subtype2 subtype3 
   5.690    7.170    6.265 
[1] "0.8 - 75.3 (5.7)"  "0.5 - 46.8 (7.2)"  "0.4 - 118.9 (6.3)"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [31] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [37] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [49] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [55] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [61] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [67] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [97] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[103] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [31] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [37] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [49] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [55] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [61] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [67] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [97] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[103] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [31] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
 [37] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [49] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [55] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [61] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [67] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [91] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [97] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[103] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
D1V2, continuous
D1V3, binary
          cls
clus        0  1
  subtype1  8 18
  subtype2 14 41
  subtype3  9 24
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8   18
  subtype2   14   41
  subtype3    9   24
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        8       14        9
  MALE         18       41       24
D1V4, continuous
D1V5, continuous
D1V6, continuous
D1V7, continuous

Clustering(2) Variable = METHLYATION_CNMF
D2V1, survival
          sevent
clus2       0  1
  subtype1 23  5
  subtype2 23 13
  subtype3 23  5
  subtype4 12  7
subtype1 subtype2 subtype3 subtype4 
      28       36       28       19 
subtype1 subtype2 subtype3 subtype4 
       5       13        5        7 
$subtype1
TCGA-BL-A0C8 TCGA-BT-A20R TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0EZ 
       12.79         5.06         8.35         5.88         3.65         8.98 
TCGA-C4-A0F6 TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A7 TCGA-DK-A1AC TCGA-DK-A1AD 
        2.01         5.19         2.53         8.98       118.88       100.47 
TCGA-DK-A2I1 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-FD-A3NA TCGA-FD-A3SR TCGA-G2-A2EK 
       10.59         2.20         3.98        32.02        19.79         5.65 
TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3RB TCGA-GC-A3RD TCGA-GD-A2C5 TCGA-GV-A3JZ 
       20.12         0.82         4.50         1.02         7.69         5.69 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-H4-A2HO TCGA-H4-A2HQ 
        7.63         7.79         1.51         6.71 

$subtype2
TCGA-BL-A13I TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20U 
        7.33         6.58        11.93        19.00        12.16         8.61 
TCGA-BT-A20V TCGA-BT-A20X TCGA-C4-A0F0 TCGA-C4-A0F1 TCGA-CF-A1HS TCGA-CU-A0YN 
        5.06         8.25         1.94         2.89         0.43        12.92 
TCGA-CU-A3KJ TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IM 
        5.46         7.17         5.85         7.76        75.32         7.82 
TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
       36.43         8.81         8.32         8.94         6.87         4.01 
TCGA-FD-A3B8 TCGA-FD-A3SO TCGA-FD-A3SP TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EL 
       11.05         5.49         4.54        61.94        26.50        26.93 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OS TCGA-GV-A40E TCGA-K4-A3WU TCGA-K4-A3WV 
        2.50         1.08         5.82         6.38         3.42         4.64 

$subtype3
TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A20N TCGA-BT-A3PH TCGA-CF-A27C TCGA-CU-A3YL 
        2.66         6.74        26.10         4.64         0.69         8.09 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AG TCGA-DK-A3IS TCGA-FD-A3N5 
        2.14        31.40         7.04         6.64        37.84         8.94 
TCGA-FD-A3N6 TCGA-FD-A3SN TCGA-FD-A3SS TCGA-FT-A3EE TCGA-G2-A2EO TCGA-G2-A2ES 
        7.96         6.81         1.94         2.33        32.78        17.26 
TCGA-G2-A3IB TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3RC TCGA-GD-A3OQ TCGA-GV-A3JV 
        7.04         2.86         2.24         1.38         3.12         4.37 
TCGA-GV-A3JX TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40G 
        6.15         4.11         6.64         5.33 

$subtype4
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-C4-A0F7 TCGA-CF-A1HR TCGA-CU-A0YO 
       17.85        19.46        14.89         2.04         0.46         4.90 
TCGA-CU-A0YR TCGA-DK-A1AB TCGA-DK-A2HX TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IV 
        7.20         8.91         1.81        10.49         5.52         9.67 
TCGA-FD-A3SL TCGA-FD-A3SQ TCGA-G2-A2EC TCGA-GC-A3OO TCGA-GD-A3OP TCGA-GV-A3JW 
       10.98        46.78        13.71         1.32         2.10         5.26 
TCGA-K4-A3WS 
        8.71 

subtype1 subtype2 subtype3 subtype4 
    0.82     0.43     0.69     0.46 
subtype1 subtype2 subtype3 subtype4 
  118.88    75.32    37.84    46.78 
subtype1 subtype2 subtype3 subtype4 
   6.295    7.250    6.395    8.710 
[1] "0.8 - 118.9 (6.3)" "0.4 - 75.3 (7.2)"  "0.7 - 37.8 (6.4)" 
[4] "0.5 - 46.8 (8.7)" 
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype4" "subtype4" "subtype1"
 [13] "subtype4" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [19] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
 [25] "subtype4" "subtype4" "subtype2" "subtype3" "subtype2" "subtype4"
 [31] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [37] "subtype3" "subtype1" "subtype3" "subtype4" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype3" "subtype4" "subtype1" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype4" "subtype3"
 [55] "subtype4" "subtype4" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [67] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype1"
 [73] "subtype3" "subtype3" "subtype4" "subtype2" "subtype2" "subtype1"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [85] "subtype3" "subtype3" "subtype4" "subtype1" "subtype3" "subtype1"
 [91] "subtype2" "subtype2" "subtype1" "subtype4" "subtype3" "subtype2"
 [97] "subtype3" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[103] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[109] "subtype4" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype4" "subtype4" "subtype1"
 [13] "subtype4" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [19] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
 [25] "subtype4" "subtype4" "subtype2" "subtype3" "subtype2" "subtype4"
 [31] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [37] "subtype3" "subtype1" "subtype3" "subtype4" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype3" "subtype4" "subtype1" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype4" "subtype3"
 [55] "subtype4" "subtype4" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [67] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype1"
 [73] "subtype3" "subtype3" "subtype4" "subtype2" "subtype2" "subtype1"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [85] "subtype3" "subtype3" "subtype4" "subtype1" "subtype3" "subtype1"
 [91] "subtype2" "subtype2" "subtype1" "subtype4" "subtype3" "subtype2"
 [97] "subtype3" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[103] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[109] "subtype4" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
  [7] "subtype2" "subtype3" "subtype2" "subtype4" "subtype4" "subtype1"
 [13] "subtype4" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [19] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
 [25] "subtype4" "subtype4" "subtype2" "subtype3" "subtype2" "subtype4"
 [31] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [37] "subtype3" "subtype1" "subtype3" "subtype4" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype3" "subtype4" "subtype1" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype4" "subtype3"
 [55] "subtype4" "subtype4" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [67] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype1"
 [73] "subtype3" "subtype3" "subtype4" "subtype2" "subtype2" "subtype1"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
 [85] "subtype3" "subtype3" "subtype4" "subtype1" "subtype3" "subtype1"
 [91] "subtype2" "subtype2" "subtype1" "subtype4" "subtype3" "subtype2"
 [97] "subtype3" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[103] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[109] "subtype4" "subtype2" "subtype2"
D2V2, continuous
D2V3, binary
          cls
clus        0  1
  subtype1 10 19
  subtype2 14 23
  subtype3  3 29
  subtype4  5 14
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   10   19
  subtype2   14   23
  subtype3    3   29
  subtype4    5   14
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       10       14        3        5
  MALE         19       23       29       14
D2V4, continuous
D2V5, continuous
D2V6, continuous
D2V7, continuous

Clustering(3) Variable = RPPA_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1  8  4
  subtype2  5  5
  subtype3 11  2
  subtype4  8  9
subtype1 subtype2 subtype3 subtype4 
      12       10       13       17 
subtype1 subtype2 subtype3 subtype4 
       4        5        2        9 
$subtype1
TCGA-BL-A0C8 TCGA-BT-A0S7 TCGA-C4-A0EZ TCGA-CU-A0YN TCGA-FD-A3B3 TCGA-FD-A3B4 
       12.79         6.58         8.98        12.92         8.81         8.32 
TCGA-G2-A2EC TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-H4-A2HQ 
       13.71        61.94        26.50         5.65        26.93         6.71 

$subtype2
TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20W TCGA-C4-A0F0 
        7.33         2.66         5.06         8.61         8.35         1.94 
TCGA-DK-A1A3 TCGA-DK-A1AD TCGA-DK-A1AF TCGA-DK-A2HX 
        2.53       100.47         5.85         1.81 

$subtype3
TCGA-BT-A0YX TCGA-BT-A20Q TCGA-C4-A0F1 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C 
       11.93        19.46         2.89         2.01         0.46         0.69 
TCGA-DK-A1A5 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-GD-A2C5 
        2.14         7.04         8.91         6.64        10.59         7.69 
TCGA-H4-A2HO 
        1.51 

$subtype4
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20T TCGA-BT-A20V 
       19.00        26.10        12.16        17.85        14.89         5.06 
TCGA-BT-A20X TCGA-BT-A2LA TCGA-C4-A0F7 TCGA-CF-A1HS TCGA-DK-A1A6 TCGA-DK-A1AC 
        8.25         5.88         2.04         0.43        31.40       118.88 
TCGA-DK-A1AE TCGA-DK-A2I2 TCGA-E5-A2PC TCGA-G2-A2EO TCGA-G2-A2ES 
        7.17         7.76        36.43        32.78        17.26 

subtype1 subtype2 subtype3 subtype4 
    5.65     1.81     0.46     0.43 
subtype1 subtype2 subtype3 subtype4 
   61.94   100.47    19.46   118.88 
subtype1 subtype2 subtype3 subtype4 
  10.885    5.455    6.640   14.890 
[1] "5.7 - 61.9 (10.9)"  "1.8 - 100.5 (5.5)"  "0.5 - 19.5 (6.6)"  
[4] "0.4 - 118.9 (14.9)"
 [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype4"
 [7] "subtype4" "subtype4" "subtype4" "subtype3" "subtype2" "subtype4"
[13] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype1"
[19] "subtype2" "subtype3" "subtype3" "subtype4" "subtype3" "subtype4"
[25] "subtype3" "subtype1" "subtype2" "subtype3" "subtype4" "subtype3"
[31] "subtype3" "subtype4" "subtype2" "subtype4" "subtype2" "subtype3"
[37] "subtype2" "subtype3" "subtype4" "subtype4" "subtype1" "subtype1"
[43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
[49] "subtype4" "subtype3" "subtype3" "subtype1"
 [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype4"
 [7] "subtype4" "subtype4" "subtype4" "subtype3" "subtype2" "subtype4"
[13] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype1"
[19] "subtype2" "subtype3" "subtype3" "subtype4" "subtype3" "subtype4"
[25] "subtype3" "subtype1" "subtype2" "subtype3" "subtype4" "subtype3"
[31] "subtype3" "subtype4" "subtype2" "subtype4" "subtype2" "subtype3"
[37] "subtype2" "subtype3" "subtype4" "subtype4" "subtype1" "subtype1"
[43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
[49] "subtype4" "subtype3" "subtype3" "subtype1"
 [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype4"
 [7] "subtype4" "subtype4" "subtype4" "subtype3" "subtype2" "subtype4"
[13] "subtype2" "subtype4" "subtype2" "subtype4" "subtype4" "subtype1"
[19] "subtype2" "subtype3" "subtype3" "subtype4" "subtype3" "subtype4"
[25] "subtype3" "subtype1" "subtype2" "subtype3" "subtype4" "subtype3"
[31] "subtype3" "subtype4" "subtype2" "subtype4" "subtype2" "subtype3"
[37] "subtype2" "subtype3" "subtype4" "subtype4" "subtype1" "subtype1"
[43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
[49] "subtype4" "subtype3" "subtype3" "subtype1"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1  6  6
  subtype2  5  5
  subtype3  5  9
  subtype4  5 12
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6    6
  subtype2    5    5
  subtype3    5    9
  subtype4    5   12
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE        6        5        5        5
  MALE          6        5        9       12
D3V4, continuous
[1] "Remove cluster labels:" "subtype2"               "subtype3"              
clus
subtype1 subtype2 subtype3 subtype4 
       5        1        1        4 
[1] "subtype4" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[8] "subtype4" "subtype4"
D3V5, continuous
D3V6, continuous
[1] "Remove cluster labels:" "subtype2"              
clus
subtype1 subtype2 subtype3 subtype4 
       6        2        5        8 
 [1] "subtype1" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
 [7] "subtype3" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
[13] "subtype1" "subtype1" "subtype1" "subtype4" "subtype3" "subtype1"
[19] "subtype3"
D3V7, continuous

Clustering(4) Variable = RPPA_CHIERARCHICAL
D4V1, survival
          sevent
clus2       0  1
  subtype1  9  5
  subtype2  7 10
  subtype3 16  5
subtype1 subtype2 subtype3 
      14       17       21 
subtype1 subtype2 subtype3 
       5       10        5 
$subtype1
TCGA-BL-A13I TCGA-BT-A0S7 TCGA-BT-A20W TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CU-A0YN 
        7.33         6.58         8.35         8.98         1.94        12.92 
TCGA-DK-A1AF TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-G2-A2EC TCGA-G2-A2EF TCGA-G2-A2EJ 
        5.85         8.81         8.32        13.71        61.94        26.50 
TCGA-G2-A2EK TCGA-H4-A2HQ 
        5.65         6.71 

$subtype2
TCGA-BL-A13J TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20R TCGA-BT-A20T 
        2.66        19.00        26.10        12.16         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20X TCGA-CF-A1HS TCGA-DK-A1A3 TCGA-DK-A1AC 
        8.61         5.06         8.25         0.43         2.53       118.88 
TCGA-DK-A1AE TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-E5-A2PC TCGA-G2-A2ES 
        7.17         1.81         7.76        36.43        17.26 

$subtype3
TCGA-BL-A0C8 TCGA-BT-A0YX TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A2LA TCGA-C4-A0F1 
       12.79        11.93        17.85        19.46         5.88         2.89 
TCGA-C4-A0F6 TCGA-C4-A0F7 TCGA-CF-A1HR TCGA-CF-A27C TCGA-DK-A1A5 TCGA-DK-A1A6 
        2.01         2.04         0.46         0.69         2.14        31.40 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-G2-A2EL 
        7.04         8.91       100.47         6.64        10.59        26.93 
TCGA-G2-A2EO TCGA-GD-A2C5 TCGA-H4-A2HO 
       32.78         7.69         1.51 

subtype1 subtype2 subtype3 
    1.94     0.43     0.46 
subtype1 subtype2 subtype3 
   61.94   118.88   100.47 
subtype1 subtype2 subtype3 
   8.335    8.250    7.690 
[1] "1.9 - 61.9 (8.3)"  "0.4 - 118.9 (8.2)" "0.5 - 100.5 (7.7)"
 [1] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[19] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[25] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[31] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[37] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[49] "subtype2" "subtype3" "subtype3" "subtype1"
 [1] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[19] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[25] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[31] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[37] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[49] "subtype2" "subtype3" "subtype3" "subtype1"
 [1] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[13] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[19] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[25] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[31] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[37] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[49] "subtype2" "subtype3" "subtype3" "subtype1"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1  8  6
  subtype2  7 10
  subtype3  6 16
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8    6
  subtype2    7   10
  subtype3    6   16
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        8        7        6
  MALE          6       10       16
D4V4, continuous
D4V5, continuous
D4V6, continuous
D4V7, continuous

Clustering(5) Variable = MRNASEQ_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 23  9
  subtype2 10  8
  subtype3 19  6
  subtype4  7  2
subtype1 subtype2 subtype3 subtype4 
      32       18       25        9 
subtype1 subtype2 subtype3 subtype4 
       9        8        6        2 
$subtype1
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20W 
       12.79         2.66        17.85        19.46        14.89         8.35 
TCGA-BT-A3PH TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR 
        4.64         2.01         0.46         0.69         4.90         7.20 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AD TCGA-DK-A1AG TCGA-DK-A3IK 
       31.40         8.98         7.04       100.47         6.64         2.20 
TCGA-DK-A3IL TCGA-DK-A3IS TCGA-DK-A3IV TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EC 
        3.98        37.84         9.67        32.02         2.33        13.71 
TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A3IE TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GV-A3JV 
        5.65        32.78        20.12         7.69         2.10         4.37 
TCGA-GV-A3JW TCGA-H4-A2HO 
        5.26         1.51 

$subtype2
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O 
        7.33         6.74         6.58        19.00        26.10        12.16 
TCGA-BT-A20V TCGA-BT-A2LA TCGA-DK-A1AC TCGA-G2-A2EF TCGA-G2-A2EL TCGA-GC-A3RB 
        5.06         5.88       118.88        61.94        26.93         4.50 
TCGA-GD-A3OS TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HQ 
        5.82         6.15         5.69         7.79         4.11         6.71 

$subtype3
TCGA-BT-A0YX TCGA-BT-A20U TCGA-BT-A20X TCGA-C4-A0F0 TCGA-CF-A1HS TCGA-CU-A0YN 
       11.93         8.61         8.25         1.94         0.43        12.92 
TCGA-CU-A3KJ TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IM 
        5.46         8.91         7.17         7.76        75.32         7.82 
TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
       36.43         8.81         8.32         8.94         6.87         4.01 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-G2-A2EJ TCGA-G2-A2ES TCGA-G2-A3IB TCGA-GC-A3I6 
        8.94         7.96        26.50        17.26         7.04         2.24 
TCGA-GD-A3OQ 
        3.12 

$subtype4
TCGA-BT-A20R TCGA-BT-A2LD TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1AF TCGA-DK-A2HX 
        5.06         3.65         2.53         2.14         5.85         1.81 
TCGA-DK-A2I1 TCGA-DK-A3IT TCGA-FD-A3B8 
       10.59         5.52        11.05 

subtype1 subtype2 subtype3 subtype4 
    0.46     4.11     0.43     1.81 
subtype1 subtype2 subtype3 subtype4 
  100.47   118.88    75.32    11.05 
subtype1 subtype2 subtype3 subtype4 
   7.120    6.725    8.250    5.060 
[1] "0.5 - 100.5 (7.1)" "4.1 - 118.9 (6.7)" "0.4 - 75.3 (8.2)" 
[4] "1.8 - 11.1 (5.1)" 
 [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [7] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
[13] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[19] "subtype4" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[25] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype4"
[31] "subtype4" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[37] "subtype1" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
[43] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[49] "subtype4" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[55] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype1"
[61] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[67] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[73] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [7] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
[13] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[19] "subtype4" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[25] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype4"
[31] "subtype4" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[37] "subtype1" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
[43] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[49] "subtype4" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[55] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype1"
[61] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[67] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[73] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [7] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype4"
[13] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[19] "subtype4" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[25] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype4"
[31] "subtype4" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[37] "subtype1" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
[43] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[49] "subtype4" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[55] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype1"
[61] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[67] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[73] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
D5V2, continuous
D5V3, binary
          cls
clus        0  1
  subtype1  8 29
  subtype2  4 14
  subtype3 10 15
  subtype4  5  5
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8   29
  subtype2    4   14
  subtype3   10   15
  subtype4    5    5
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE        8        4       10        5
  MALE         29       14       15        5
D5V4, continuous
[1] "Remove cluster labels:" "subtype4"              
clus
subtype1 subtype2 subtype3 subtype4 
      12        7        6        1 
 [1] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [7] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[13] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[19] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[25] "subtype2"
D5V5, continuous
D5V6, continuous
D5V7, continuous

Clustering(6) Variable = MRNASEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 19  6
  subtype2 29 10
  subtype3 11  9
subtype1 subtype2 subtype3 
      25       39       20 
subtype1 subtype2 subtype3 
       6       10        9 
$subtype1
TCGA-BT-A0YX TCGA-BT-A20U TCGA-BT-A20X TCGA-C4-A0F0 TCGA-CF-A1HS TCGA-CU-A0YN 
       11.93         8.61         8.25         1.94         0.43        12.92 
TCGA-CU-A3KJ TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IM 
        5.46         8.91         7.17         7.76        75.32         7.82 
TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
       36.43         8.81         8.32         8.94         6.87         4.01 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2ES TCGA-G2-A3IB 
        8.94         7.96        61.94        26.50        17.26         7.04 
TCGA-GC-A3I6 
        2.24 

$subtype2
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20W 
       12.79         2.66        17.85        19.46        14.89         8.35 
TCGA-BT-A3PH TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CU-A0YO TCGA-CU-A0YR 
        4.64         2.01         0.46         0.69         4.90         7.20 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AD TCGA-DK-A1AG 
        2.14        31.40         8.98         7.04       100.47         6.64 
TCGA-DK-A2I1 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV 
       10.59         2.20         3.98        37.84         5.52         9.67 
TCGA-FD-A3NA TCGA-FT-A3EE TCGA-G2-A2EC TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A3IE 
       32.02         2.33        13.71         5.65        32.78        20.12 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX 
        7.69         2.10         3.12         4.37         5.26         6.15 
TCGA-GV-A3QH TCGA-H4-A2HO TCGA-H4-A2HQ 
        7.79         1.51         6.71 

$subtype3
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O 
        7.33         6.74         6.58        19.00        26.10        12.16 
TCGA-BT-A20R TCGA-BT-A20V TCGA-BT-A2LA TCGA-BT-A2LD TCGA-DK-A1A3 TCGA-DK-A1AC 
        5.06         5.06         5.88         3.65         2.53       118.88 
TCGA-DK-A1AF TCGA-DK-A2HX TCGA-FD-A3B8 TCGA-G2-A2EL TCGA-GC-A3RB TCGA-GD-A3OS 
        5.85         1.81        11.05        26.93         4.50         5.82 
TCGA-GV-A3JZ TCGA-GV-A3QI 
        5.69         4.11 

subtype1 subtype2 subtype3 
    0.43     0.46     1.81 
subtype1 subtype2 subtype3 
   75.32   100.47   118.88 
subtype1 subtype2 subtype3 
   8.320    6.710    5.865 
[1] "0.4 - 75.3 (8.3)"  "0.5 - 100.5 (6.7)" "1.8 - 118.9 (5.9)"
 [1] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[13] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[19] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[25] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[37] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[43] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[49] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[55] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[61] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[67] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[73] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[79] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [1] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[13] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[19] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[25] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[37] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[43] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[49] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[55] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[61] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[67] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[73] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[79] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [1] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
 [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[13] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[19] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[25] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[37] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[43] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[49] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[55] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[61] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[67] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[73] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[79] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
D6V2, continuous
D6V3, binary
          cls
clus        0  1
  subtype1 10 15
  subtype2 10 34
  subtype3  7 14
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   10   15
  subtype2   10   34
  subtype3    7   14
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       10       10        7
  MALE         15       34       14
D6V4, continuous
D6V5, continuous
D6V6, continuous
D6V7, continuous

Clustering(7) Variable = MIRSEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 17  3
  subtype2 35 20
  subtype3 22  7
subtype1 subtype2 subtype3 
      20       55       29 
subtype1 subtype2 subtype3 
       3       20        7 
$subtype1
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A0YX TCGA-BT-A20W TCGA-BT-A2LD TCGA-CU-A0YR 
       12.79         2.66        11.93         8.35         3.65         7.20 
TCGA-DK-A1A5 TCGA-DK-A1AC TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IT 
        2.14       118.88        10.59        75.32         2.20         5.52 
TCGA-FD-A3SN TCGA-FD-A3SS TCGA-G2-A3VY TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3QF 
        6.81         1.94         0.82         4.37         6.15         7.63 
TCGA-H4-A2HO TCGA-H4-A2HQ 
        1.51         6.71 

$subtype2
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O 
        7.33         6.74         6.58        19.00        26.10        12.16 
TCGA-BT-A20P TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A3PH 
       17.85         8.61         5.06         8.25         5.88         4.64 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F1 TCGA-C4-A0F6 TCGA-C4-A0F7 TCGA-CF-A1HS 
        8.98         1.94         2.89         2.01         2.04         0.43 
TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A3KJ TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        0.69        12.92         5.46        31.40         8.98         7.04 
TCGA-DK-A1AG TCGA-DK-A2I2 TCGA-DK-A3IM TCGA-DK-A3IS TCGA-E5-A2PC TCGA-FD-A3B5 
        6.64         7.76         7.82        37.84        36.43         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SO 
        6.87         4.01         8.94         7.96        32.02         5.49 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
        2.33        61.94        26.50        26.93        32.78        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3RB TCGA-GC-A3RC 
        7.04        20.12         2.86         2.24         4.50         1.38 
TCGA-GC-A3RD TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JW TCGA-GV-A3QH TCGA-GV-A3QI 
        1.02         3.12         5.82         5.26         7.79         4.11 
TCGA-K4-A3WV 
        4.64 

$subtype3
TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-CF-A1HR TCGA-CU-A0YO TCGA-CU-A3YL 
       19.46         5.06        14.89         0.46         4.90         8.09 
TCGA-DK-A1A3 TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A2HX 
        2.53         8.91       100.47         7.17         5.85         1.81 
TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B8 
        3.98        10.49         9.67         8.81         8.32        11.05 
TCGA-FD-A3SL TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-G2-A2EC TCGA-G2-A2EK 
       10.98         4.54        46.78        19.79        13.71         5.65 
TCGA-GC-A3OO TCGA-GC-A3WC TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-K4-A3WS 
        1.32         2.50         7.69         2.10         8.71 

subtype1 subtype2 subtype3 
    0.82     0.43     0.46 
subtype1 subtype2 subtype3 
  118.88    61.94   100.47 
subtype1 subtype2 subtype3 
    6.43     7.04     8.09 
[1] "0.8 - 118.9 (6.4)" "0.4 - 61.9 (7.0)"  "0.5 - 100.5 (8.1)"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [31] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [49] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [97] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[103] "subtype3" "subtype2"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [31] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [49] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [97] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[103] "subtype3" "subtype2"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [31] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [49] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [67] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [85] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [91] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [97] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[103] "subtype3" "subtype2"
D7V2, continuous
D7V3, binary
          cls
clus        0  1
  subtype1  4 20
  subtype2 16 41
  subtype3 11 18
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4   20
  subtype2   16   41
  subtype3   11   18
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        4       16       11
  MALE         20       41       18
D7V4, continuous
D7V5, continuous
D7V6, continuous
D7V7, continuous

Clustering(8) Variable = MIRSEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 15  4
  subtype2 51 22
  subtype3  8  4
subtype1 subtype2 subtype3 
      19       73       12 
subtype1 subtype2 subtype3 
       4       22        4 
$subtype1
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A0YX TCGA-BT-A20W TCGA-BT-A2LD TCGA-CU-A0YR 
       12.79         2.66        11.93         8.35         3.65         7.20 
TCGA-DK-A1A5 TCGA-DK-A1AC TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IT 
        2.14       118.88        10.59        75.32         2.20         5.52 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FT-A3EE TCGA-GV-A3JV TCGA-GV-A3QF TCGA-H4-A2HO 
        6.81         5.49         2.33         4.37         7.63         1.51 
TCGA-H4-A2HQ 
        6.71 

$subtype2
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O 
        7.33         6.74         6.58        19.00        26.10        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LA 
       17.85        19.46         8.61         5.06         8.25         5.88 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F1 TCGA-C4-A0F6 TCGA-C4-A0F7 
        4.64         8.98         1.94         2.89         2.01         2.04 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3KJ 
        0.46         0.43         0.69        12.92         4.90         5.46 
TCGA-CU-A3YL TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD 
        8.09        31.40         8.98         7.04         8.91       100.47 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I2 TCGA-DK-A3IM TCGA-DK-A3IS 
        7.17         5.85         6.64         7.76         7.82        37.84 
TCGA-DK-A3IV TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
        9.67        36.43         8.81         8.32         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL 
        4.01        11.05         8.94         7.96        32.02        10.98 
TCGA-FD-A3SP TCGA-G2-A2EC TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        4.54        13.71        61.94        26.50         5.65        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3I6 
       32.78        17.26         7.04        20.12         2.86         2.24 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GD-A2C5 
        1.32         4.50         1.38         1.02         2.50         7.69 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JW TCGA-GV-A3QH TCGA-GV-A3QI 
        2.10         3.12         5.82         5.26         7.79         4.11 
TCGA-K4-A3WV 
        4.64 

$subtype3
TCGA-BT-A20R TCGA-BT-A20T TCGA-DK-A1A3 TCGA-DK-A2HX TCGA-DK-A3IL TCGA-DK-A3IQ 
        5.06        14.89         2.53         1.81         3.98        10.49 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-G2-A3VY TCGA-GV-A3JX TCGA-K4-A3WS 
       46.78        19.79         1.94         0.82         6.15         8.71 

subtype1 subtype2 subtype3 
    1.51     0.43     0.82 
subtype1 subtype2 subtype3 
  118.88   100.47    46.78 
subtype1 subtype2 subtype3 
   6.710    7.330    5.605 
[1] "1.5 - 118.9 (6.7)" "0.4 - 100.5 (7.3)" "0.8 - 46.8 (5.6)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [43] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [49] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [73] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [97] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[103] "subtype3" "subtype2"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [43] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [49] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [73] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [97] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[103] "subtype3" "subtype2"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [37] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [43] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [49] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [73] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [97] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[103] "subtype3" "subtype2"
D8V2, continuous
D8V3, binary
          cls
clus        0  1
  subtype1  5 18
  subtype2 23 52
  subtype3  3  9
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   18
  subtype2   23   52
  subtype3    3    9
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        5       23        3
  MALE         18       52        9
D8V4, continuous
D8V5, continuous
D8V6, continuous
D8V7, continuous
                            V1.D                               V2 
                 "Time to Death"                            "AGE" 
                              V3                               V4 
                        "GENDER"    "KARNOFSKY.PERFORMANCE.SCORE" 
                              V5                               V6 
         "NUMBERPACKYEARSSMOKED"             "STOPPEDSMOKINGYEAR" 
                              V7 
"TOBACCOSMOKINGHISTORYINDICATOR" 
> q(save="no")
