# Created: Tue Jan 29 15:59:48 EST 2013 by cgaadm_deadline
# Job: 300602    server:  http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/
# Module: GetReducedSegments urn:lsid:broadinstitute.org:cancer.genome.analysis:00240:28
# Parameters: 
#    seglist = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/BRCA-TP/2327738/2.GDAC_MergeDataFiles.Finished/BRCA-TP.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt
#    by = gene
#    featurename = Hybridization.REF
#    imput = FALSE
#    XY = FALSE
#    what = median
#    outname = BRCA-TP
#    segmentid = Sample
#    chromosome = Chromosome
#    start = Start
#    end = End
#    segmean = Segment_Mean
