min sampled: 8
max sampled: 20
avg sampled: 15.980975
18 18 17 16 16 15 17 16 17 17 16 15 14 12 17 15 13 17 14 16 16 17 13 17 15 17 16 17 15 18 16 18 18 18 19 19 17 15 15 14 17 17 16 17 14 18 15 15 16 17 15 18 19 14 17 15 16 13 16 16 15 18 15 18 16 16 17 14 15 19 18 19 16 19 18 17 16 13 15 16 18 14 17 13 16 15 18 18 13 17 15 17 15 16 14 19 16 19 16 17 18 16 17 15 16 14 19 15 17 16 16 18 12 18 16 15 15 16 17 19 12 14 15 13 14 19 16 16 16 17 16 18 13 16 14 16 16 18 16 17 15 20 13 13 15 13 17 15 16 17 14 16 16 16 15 13 14 16 16 17 15 16 16 17 12 14 15 16 18 16 10 14 12 15 20 20 18 15 19 17 13 17 17 18 16 18 15 19 15 17 15 17 17 14 18 17 16 17 14 14 18 18 16 15 16 16 16 15 14 13 16 16 16 16 15 16 18 11 17 15 16 13 17 20 18 18 14 17 17 15 12 19 15 14 17 12 15 18 18 13 16 19 15 18 14 19 16 12 15 12 13 18 15 12 17 13 13 17 17 12 14 17 14 13 16 13 17 15 18 17 18 14 17 18 16 19 17 17 15 16 16 18 16 17 18 13 14 18 15 16 17 18 13 13 15 17 14 18 11 15 15 15 17 17 17 18 19 16 18 12 17 14 15 16 17 17 17 19 19 14 19 17 18 15 17 15 17 13 17 15 18 15 15 16 17 16 14 16 16 17 16 18 16 15 16 18 16 16 17 15 13 14 12 15 16 16 15 15 17 17 18 17 17 15 16 16 17 17 14 17 14 17 17 16 17 16 15 18 18 18 17 15 17 16 14 14 18 17 17 15 15 18 15 15 14 18 16 13 16 16 19 15 18 19 16 16 16 14 16 8 16 14 17 18 14 17 18 16 12 14 17 15 16 19 14 16 15 19 15 14 16 15 17 16 16 18 17 12 18 16 17 17 15 15 16 18 18 15 16 14 14 19 17 15 14 10 17 19 14 18 16 17 15 15 17 16 14 18 14 14 20 17 15 19 13 16 17 14 18 16 17 17 18 17 17 18 14 14 11 13 15 14 14 14 17 17 18 18 18 14 16 13 17 13 12 15 19 17 17 14 14 16 15 17 16 19 17 13 19 14 15 14 15 16 16 15 15 16 16 18 16 19 16 17 18 16 17 18 17 14 12 15 15 20 14 15 14 18 16 14 15 18 19 13 15 18 14 16 16 17 18 15 15 16 17 13 17 15 18 14 16 18 16 16 16 15 10 16 16 17 17 18 17 15 16 18 15 16 17 18 15 18 17 18 13 17 13 16 16 16 18 16 15 15 17 18 14 17 16 16 18 16 16 17 17 16 18 18 14 15 17 11 14 16 15 15 18 18 11 16 15 11 19 17 16 17 15 15 19 18 13 18 16 15 15 18 17 18 17 17 14 15 17 18 17 17 17 14 17 18 15 15 14 18 14 17 19 13 13 19 16 18 18 15 15 17 16 17 14 16 16 17 16 15 16 16 13 18 15 14 16 18 14 16 15 16 17 18 16 15 17 16 17 14 14 14 19 13 13 15 16 19 16 17 19 15 16 12 14 19 14 15 18 19 13 18 16 15 14 15 19 16 19 17 16 16 16 19 17 17 15 19 16 19 15 16 17 14 15 15 16 14 19 16 15 17 17 16 16 18 16 17 16 15 18 17 15 19 18 15 17 17 13 17 16 17 16 15 16 14 16 17 16 18 13 15 18 16 15 17 18 16 14 16 20 17 17 17 18 19 18 15 17 13 16 15 16 14 15 14 18 18 17 15 15 18 14 17 15 18 12 17 16 11 15 16 17 20 15 19 15 20 14 16 17 15 17 16 17 14 13 Number of clusters distribution:
Num	Count
1	0
2	20
3	20
4	20
5	20
6	20
7	20
8	20
Reading consensus matrices from files ..

	processing file 'outputprefix.expclu.sub672.2.gct' ..

	processing file 'outputprefix.expclu.sub672.3.gct' ..

	processing file 'outputprefix.expclu.sub672.4.gct' ..

	processing file 'outputprefix.expclu.sub672.5.gct' ..

	processing file 'outputprefix.expclu.sub672.6.gct' ..

	processing file 'outputprefix.expclu.sub672.7.gct' ..

	processing file 'outputprefix.expclu.sub672.8.gct' ..

Plotting statistics to 'outputprefix.expclu.sub672.statistics.pdf' .. 

	Lorenz curve .. done.

	Gini..done.

	Consensus distribution .. done.

	CDF area .. done.

lsf stdout
Sender: LSF System <lsf@node1427>
Subject: Job 3978639: </broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/300496/outputprefix.expclu.gct 8 20 -n2 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out> Done

Job </broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/300496/outputprefix.expclu.gct 8 20 -n2 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out> was submitted from host <node1642> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1427>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/300497> was used as the working directory.
Started at Tue Jan 29 15:54:22 2013
Results reported at Tue Jan 29 17:24:59 2013

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
/broad/software/free/Linux/redhat_5_x86_64/pkgs/sun-java-jdk_1.6.0-21_x86_64/bin/java -Xmx512m -DR=/xchip/genepattern/R-2.5.0 -cp /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Acme.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-modules.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/broad-cg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/geneweaver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/RunSomAlg.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/jaxb-rt-1.0-ea.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/file_support.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/archiver.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/trove.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/gp-common.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/Jama-1.0.1.jar:/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/cc.jar edu.mit.broad.modules.cc.CC /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/300496/outputprefix.expclu.gct 8 20 -n2 -N 0 -@12345 -S subsample -t HIERARCHICAL -D PEARSON -L average -i 2000 -o outputprefix.expclu -s -d -p -z 2 -l0 -v0 -b/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_ConsensusClustering.6.1378/ >> cmd.out
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   5591.17 sec.
    Max Memory :       768 MB
    Max Swap   :      1136 MB

    Max Processes  :         4
    Max Threads    :        27

The output (if any) follows:



PS:

Read file <.lsf.err> for stderr output of this job.

lsf stderr
