
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.36.3689/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.36.3689/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/303405/COAD-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/COAD-TP/2330183/1.GDAC_clinicalDataPicker.Finished/COAD-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=423, in cluster file=155, common to both=155
[1] 207 155
[1] "APC MUTATION ANALYSIS"
[1] 3
  APC MUTATED APC WILD-TYPE 
          103            52 
  APC MUTATED APC WILD-TYPE 
          103            52 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            58             97 
  KRAS MUTATED KRAS WILD-TYPE 
            58             97 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            75             80 
  TP53 MUTATED TP53 WILD-TYPE 
            75             80 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             18             137 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             18             137 
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             29             126 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             29             126 
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
            15            140 
  NRAS MUTATED NRAS WILD-TYPE 
            15            140 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              26              129 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              26              129 
[1] "FAM123B MUTATION ANALYSIS"
[1] 3
  FAM123B MUTATED FAM123B WILD-TYPE 
               19               136 
  FAM123B MUTATED FAM123B WILD-TYPE 
               19               136 
[1] "TTN MUTATION ANALYSIS"
[1] 3
  TTN MUTATED TTN WILD-TYPE 
           69            86 
  TTN MUTATED TTN WILD-TYPE 
           69            86 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
            20            135 
  BRAF MUTATED BRAF WILD-TYPE 
            20            135 
[1] "WBSCR17 MUTATION ANALYSIS"
[1] 3
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
               17               138 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
               17               138 
[1] "ACVR1B MUTATION ANALYSIS"
[1] 3
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              13              142 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              13              142 
[1] "LRP1B MUTATION ANALYSIS"
[1] 3
  LRP1B MUTATED LRP1B WILD-TYPE 
             30             125 
  LRP1B MUTATED LRP1B WILD-TYPE 
             30             125 
[1] "SMAD2 MUTATION ANALYSIS"
[1] 3
  SMAD2 MUTATED SMAD2 WILD-TYPE 
             10             145 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
             10             145 
[1] "CNTN6 MUTATION ANALYSIS"
[1] 3
  CNTN6 MUTATED CNTN6 WILD-TYPE 
             15             140 
  CNTN6 MUTATED CNTN6 WILD-TYPE 
             15             140 
[1] "PCDH9 MUTATION ANALYSIS"
[1] 3
  PCDH9 MUTATED PCDH9 WILD-TYPE 
             16             139 
  PCDH9 MUTATED PCDH9 WILD-TYPE 
             16             139 
[1] "SOX9 MUTATION ANALYSIS"
[1] 3
  SOX9 MUTATED SOX9 WILD-TYPE 
             9            146 
  SOX9 MUTATED SOX9 WILD-TYPE 
             9            146 
[1] "TXNDC3 MUTATION ANALYSIS"
[1] 3
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
              10              145 
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
              10              145 
[1] "MAP2K4 MUTATION ANALYSIS"
[1] 3
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
               9              146 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
               9              146 
[1] "SDK1 MUTATION ANALYSIS"
[1] 3
  SDK1 MUTATED SDK1 WILD-TYPE 
            25            130 
  SDK1 MUTATED SDK1 WILD-TYPE 
            25            130 
[1] "OR6N1 MUTATION ANALYSIS"
[1] 3
  OR6N1 MUTATED OR6N1 WILD-TYPE 
              8             147 
  OR6N1 MUTATED OR6N1 WILD-TYPE 
              8             147 
[1] "GRIA1 MUTATION ANALYSIS"
[1] 3
  GRIA1 MUTATED GRIA1 WILD-TYPE 
             14             141 
  GRIA1 MUTATED GRIA1 WILD-TYPE 
             14             141 
[1] "DMD MUTATION ANALYSIS"
[1] 3
  DMD MUTATED DMD WILD-TYPE 
           27           128 
  DMD MUTATED DMD WILD-TYPE 
           27           128 
[1] "NRXN1 MUTATION ANALYSIS"
[1] 3
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             17             138 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
             17             138 
[1] "OTOL1 MUTATION ANALYSIS"
[1] 3
  OTOL1 MUTATED OTOL1 WILD-TYPE 
              7             148 
  OTOL1 MUTATED OTOL1 WILD-TYPE 
              7             148 
[1] "OR2M4 MUTATION ANALYSIS"
[1] 3
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              8             147 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              8             147 
[1] "MGC42105 MUTATION ANALYSIS"
[1] 3
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                10                145 
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                10                145 
[1] "AFF2 MUTATION ANALYSIS"
[1] 3
  AFF2 MUTATED AFF2 WILD-TYPE 
            15            140 
  AFF2 MUTATED AFF2 WILD-TYPE 
            15            140 
[1] "KCNA4 MUTATION ANALYSIS"
[1] 3
  KCNA4 MUTATED KCNA4 WILD-TYPE 
             10             145 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
             10             145 
[1] "MGC26647 MUTATION ANALYSIS"
[1] 3
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 7                148 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 7                148 
[1] "TNFRSF10C MUTATION ANALYSIS"
[1] 3
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  6                 149 
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  6                 149 
[1] "TPTE MUTATION ANALYSIS"
[1] 3
  TPTE MUTATED TPTE WILD-TYPE 
            11            144 
  TPTE MUTATED TPTE WILD-TYPE 
            11            144 
[1] "CDH11 MUTATION ANALYSIS"
[1] 3
  CDH11 MUTATED CDH11 WILD-TYPE 
             13             142 
  CDH11 MUTATED CDH11 WILD-TYPE 
             13             142 
[1] "GABRA5 MUTATION ANALYSIS"
[1] 3
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               8              147 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               8              147 
[1] "PCDHB2 MUTATION ANALYSIS"
[1] 3
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
              13              142 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
              13              142 
[1] "KLHL4 MUTATION ANALYSIS"
[1] 3
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             12             143 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             12             143 
[1] "OR51V1 MUTATION ANALYSIS"
[1] 3
  OR51V1 MUTATED OR51V1 WILD-TYPE 
               9              146 
  OR51V1 MUTATED OR51V1 WILD-TYPE 
               9              146 
[1] "ISL1 MUTATION ANALYSIS"
[1] 3
  ISL1 MUTATED ISL1 WILD-TYPE 
             8            147 
  ISL1 MUTATED ISL1 WILD-TYPE 
             8            147 
[1] "GRIK3 MUTATION ANALYSIS"
[1] 3
  GRIK3 MUTATED GRIK3 WILD-TYPE 
             14             141 
  GRIK3 MUTATED GRIK3 WILD-TYPE 
             14             141 
[1] "PRDM9 MUTATION ANALYSIS"
[1] 3
  PRDM9 MUTATED PRDM9 WILD-TYPE 
             11             144 
  PRDM9 MUTATED PRDM9 WILD-TYPE 
             11             144 
[1] "TCF7L2 MUTATION ANALYSIS"
[1] 3
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
              11              144 
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
              11              144 
[1] "C8B MUTATION ANALYSIS"
[1] 3
  C8B MUTATED C8B WILD-TYPE 
            9           146 
  C8B MUTATED C8B WILD-TYPE 
            9           146 
[1] "PSG8 MUTATION ANALYSIS"
[1] 3
  PSG8 MUTATED PSG8 WILD-TYPE 
             8            147 
  PSG8 MUTATED PSG8 WILD-TYPE 
             8            147 
[1] "DNAH5 MUTATION ANALYSIS"
[1] 3
  DNAH5 MUTATED DNAH5 WILD-TYPE 
             28             127 
  DNAH5 MUTATED DNAH5 WILD-TYPE 
             28             127 
[1] "FAM22F MUTATION ANALYSIS"
[1] 3
  FAM22F MUTATED FAM22F WILD-TYPE 
               8              147 
  FAM22F MUTATED FAM22F WILD-TYPE 
               8              147 
[1] "ATM MUTATION ANALYSIS"
[1] 3
  ATM MUTATED ATM WILD-TYPE 
           21           134 
  ATM MUTATED ATM WILD-TYPE 
           21           134 
[1] "CCDC160 MUTATION ANALYSIS"
[1] 3
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                5               150 
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                5               150 
[1] "EPHA3 MUTATION ANALYSIS"
[1] 3
  EPHA3 MUTATED EPHA3 WILD-TYPE 
             13             142 
  EPHA3 MUTATED EPHA3 WILD-TYPE 
             13             142 
[1] "CASP8 MUTATION ANALYSIS"
[1] 3
  CASP8 MUTATED CASP8 WILD-TYPE 
             10             145 
  CASP8 MUTATED CASP8 WILD-TYPE 
             10             145 
[1] "FLG MUTATION ANALYSIS"
[1] 3
  FLG MUTATED FLG WILD-TYPE 
           26           129 
  FLG MUTATED FLG WILD-TYPE 
           26           129 
[1] "DCAF4L2 MUTATION ANALYSIS"
[1] 3
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
                9               146 
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
                9               146 
[1] "TRPS1 MUTATION ANALYSIS"
[1] 3
  TRPS1 MUTATED TRPS1 WILD-TYPE 
             13             142 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
             13             142 
[1] "ROBO1 MUTATION ANALYSIS"
[1] 3
  ROBO1 MUTATED ROBO1 WILD-TYPE 
             14             141 
  ROBO1 MUTATED ROBO1 WILD-TYPE 
             14             141 
[1] "FAT4 MUTATION ANALYSIS"
[1] 3
  FAT4 MUTATED FAT4 WILD-TYPE 
            29            126 
  FAT4 MUTATED FAT4 WILD-TYPE 
            29            126 
[1] "PCDH17 MUTATION ANALYSIS"
[1] 3
  PCDH17 MUTATED PCDH17 WILD-TYPE 
              14              141 
  PCDH17 MUTATED PCDH17 WILD-TYPE 
              14              141 
[1] "ZFHX4 MUTATION ANALYSIS"
[1] 3
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
             17             138 
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
             17             138 
[1] "NCKAP5 MUTATION ANALYSIS"
[1] 3
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
              13              142 
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
              13              142 
[1] "POSTN MUTATION ANALYSIS"
[1] 3
  POSTN MUTATED POSTN WILD-TYPE 
             11             144 
  POSTN MUTATED POSTN WILD-TYPE 
             11             144 
[1] "ADAM29 MUTATION ANALYSIS"
[1] 3
  ADAM29 MUTATED ADAM29 WILD-TYPE 
               9              146 
  ADAM29 MUTATED ADAM29 WILD-TYPE 
               9              146 
[1] "FLRT2 MUTATION ANALYSIS"
[1] 3
  FLRT2 MUTATED FLRT2 WILD-TYPE 
             11             144 
  FLRT2 MUTATED FLRT2 WILD-TYPE 
             11             144 
[1] "ZC3H13 MUTATION ANALYSIS"
[1] 3
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              17              138 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              17              138 
[1] "NRXN3 MUTATION ANALYSIS"
[1] 3
  NRXN3 MUTATED NRXN3 WILD-TYPE 
             15             140 
  NRXN3 MUTATED NRXN3 WILD-TYPE 
             15             140 
[1] "SFMBT2 MUTATION ANALYSIS"
[1] 3
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
              12              143 
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
              12              143 
[1] "TMEM132D MUTATION ANALYSIS"
[1] 3
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                15                140 
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                15                140 
[1] "LPPR4 MUTATION ANALYSIS"
[1] 3
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             11             144 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
             11             144 
[1] "ESR1 MUTATION ANALYSIS"
[1] 3
  ESR1 MUTATED ESR1 WILD-TYPE 
            11            144 
  ESR1 MUTATED ESR1 WILD-TYPE 
            11            144 
[1] "SYNE1 MUTATION ANALYSIS"
[1] 3
  SYNE1 MUTATED SYNE1 WILD-TYPE 
             37             118 
  SYNE1 MUTATED SYNE1 WILD-TYPE 
             37             118 
[1] "LIFR MUTATION ANALYSIS"
[1] 3
  LIFR MUTATED LIFR WILD-TYPE 
            13            142 
  LIFR MUTATED LIFR WILD-TYPE 
            13            142 
[1] "CHRM2 MUTATION ANALYSIS"
[1] 3
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              8             147 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              8             147 
[1] "CDH10 MUTATION ANALYSIS"
[1] 3
  CDH10 MUTATED CDH10 WILD-TYPE 
             12             143 
  CDH10 MUTATED CDH10 WILD-TYPE 
             12             143 
[1] "CPXCR1 MUTATION ANALYSIS"
[1] 3
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               6              149 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               6              149 
[1] "OR2L13 MUTATION ANALYSIS"
[1] 3
  OR2L13 MUTATED OR2L13 WILD-TYPE 
               7              148 
  OR2L13 MUTATED OR2L13 WILD-TYPE 
               7              148 
[1] "RYR2 MUTATION ANALYSIS"
[1] 3
  RYR2 MUTATED RYR2 WILD-TYPE 
            22            133 
  RYR2 MUTATED RYR2 WILD-TYPE 
            22            133 
[1] "SCN7A MUTATION ANALYSIS"
[1] 3
  SCN7A MUTATED SCN7A WILD-TYPE 
             12             143 
  SCN7A MUTATED SCN7A WILD-TYPE 
             12             143 
[1] "USP17L2 MUTATION ANALYSIS"
[1] 3
  USP17L2 MUTATED USP17L2 WILD-TYPE 
                7               148 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
                7               148 
[1] "NAALAD2 MUTATION ANALYSIS"
[1] 3
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
               11               144 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
               11               144 
[1] "ERBB4 MUTATION ANALYSIS"
[1] 3
  ERBB4 MUTATED ERBB4 WILD-TYPE 
             14             141 
  ERBB4 MUTATED ERBB4 WILD-TYPE 
             14             141 
[1] "GPHN MUTATION ANALYSIS"
[1] 3
  GPHN MUTATED GPHN WILD-TYPE 
            11            144 
  GPHN MUTATED GPHN WILD-TYPE 
            11            144 
[1] "LRRN3 MUTATION ANALYSIS"
[1] 3
  LRRN3 MUTATED LRRN3 WILD-TYPE 
              9             146 
  LRRN3 MUTATED LRRN3 WILD-TYPE 
              9             146 
[1] "PCDHB5 MUTATION ANALYSIS"
[1] 3
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
              12              143 
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
              12              143 
[1] "MIER3 MUTATION ANALYSIS"
[1] 3
  MIER3 MUTATED MIER3 WILD-TYPE 
             10             145 
  MIER3 MUTATED MIER3 WILD-TYPE 
             10             145 
[1] "RIMS1 MUTATION ANALYSIS"
[1] 3
  RIMS1 MUTATED RIMS1 WILD-TYPE 
             12             143 
  RIMS1 MUTATED RIMS1 WILD-TYPE 
             12             143 
[1] "GUCY1A3 MUTATION ANALYSIS"
[1] 3
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
               10               145 
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
               10               145 
[1] "PCDH10 MUTATION ANALYSIS"
[1] 3
  PCDH10 MUTATED PCDH10 WILD-TYPE 
              14              141 
  PCDH10 MUTATED PCDH10 WILD-TYPE 
              14              141 
[1] "PCDH11X MUTATION ANALYSIS"
[1] 3
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               11               144 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               11               144 
[1] "GML MUTATION ANALYSIS"
[1] 3
  GML MUTATED GML WILD-TYPE 
            5           150 
  GML MUTATED GML WILD-TYPE 
            5           150 
[1] "OR4A15 MUTATION ANALYSIS"
[1] 3
  OR4A15 MUTATED OR4A15 WILD-TYPE 
               6              149 
  OR4A15 MUTATED OR4A15 WILD-TYPE 
               6              149 
[1] "ANK2 MUTATION ANALYSIS"
[1] 3
  ANK2 MUTATED ANK2 WILD-TYPE 
            24            131 
  ANK2 MUTATED ANK2 WILD-TYPE 
            24            131 
[1] "FAM5C MUTATION ANALYSIS"
[1] 3
  FAM5C MUTATED FAM5C WILD-TYPE 
             10             145 
  FAM5C MUTATED FAM5C WILD-TYPE 
             10             145 
[1] "MARCO MUTATION ANALYSIS"
[1] 3
  MARCO MUTATED MARCO WILD-TYPE 
              9             146 
  MARCO MUTATED MARCO WILD-TYPE 
              9             146 
[1] "ACVR2A MUTATION ANALYSIS"
[1] 3
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               8              147 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               8              147 
[1] "OR7C1 MUTATION ANALYSIS"
[1] 3
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              6             149 
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              6             149 
[1] "SOHLH2 MUTATION ANALYSIS"
[1] 3
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
               8              147 
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
               8              147 
[1] "FAM135B MUTATION ANALYSIS"
[1] 3
  FAM135B MUTATED FAM135B WILD-TYPE 
               12               143 
  FAM135B MUTATED FAM135B WILD-TYPE 
               12               143 
[1] "KIAA1486 MUTATION ANALYSIS"
[1] 3
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
                 9                146 
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
                 9                146 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              16              139 
  ARID1A MUTATED ARID1A WILD-TYPE 
              16              139 
[1] "IL18R1 MUTATION ANALYSIS"
[1] 3
  IL18R1 MUTATED IL18R1 WILD-TYPE 
               8              147 
  IL18R1 MUTATED IL18R1 WILD-TYPE 
               8              147 
[1] "TNR MUTATION ANALYSIS"
[1] 3
  TNR MUTATED TNR WILD-TYPE 
           15           140 
  TNR MUTATED TNR WILD-TYPE 
           15           140 
[1] "CADM1 MUTATION ANALYSIS"
[1] 3
  CADM1 MUTATED CADM1 WILD-TYPE 
              8             147 
  CADM1 MUTATED CADM1 WILD-TYPE 
              8             147 
[1] "EVC2 MUTATION ANALYSIS"
[1] 3
  EVC2 MUTATED EVC2 WILD-TYPE 
            13            142 
  EVC2 MUTATED EVC2 WILD-TYPE 
            13            142 
[1] "CYTL1 MUTATION ANALYSIS"
[1] 3
  CYTL1 MUTATED CYTL1 WILD-TYPE 
              4             151 
  CYTL1 MUTATED CYTL1 WILD-TYPE 
              4             151 
[1] "OR6T1 MUTATION ANALYSIS"
[1] 3
  OR6T1 MUTATED OR6T1 WILD-TYPE 
              6             149 
  OR6T1 MUTATED OR6T1 WILD-TYPE 
              6             149 
[1] "RNASE11 MUTATION ANALYSIS"
[1] 3
  RNASE11 MUTATED RNASE11 WILD-TYPE 
                5               150 
  RNASE11 MUTATED RNASE11 WILD-TYPE 
                5               150 
[1] "DLC1 MUTATION ANALYSIS"
[1] 3
  DLC1 MUTATED DLC1 WILD-TYPE 
            16            139 
  DLC1 MUTATED DLC1 WILD-TYPE 
            16            139 
[1] "CNBD1 MUTATION ANALYSIS"
[1] 3
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              6             149 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              6             149 
[1] "ATP7A MUTATION ANALYSIS"
[1] 3
  ATP7A MUTATED ATP7A WILD-TYPE 
              5             150 
  ATP7A MUTATED ATP7A WILD-TYPE 
              5             150 
[1] "OR6B3 MUTATION ANALYSIS"
[1] 3
  OR6B3 MUTATED OR6B3 WILD-TYPE 
              5             150 
  OR6B3 MUTATED OR6B3 WILD-TYPE 
              5             150 
[1] "TLL1 MUTATION ANALYSIS"
[1] 3
  TLL1 MUTATED TLL1 WILD-TYPE 
            11            144 
  TLL1 MUTATED TLL1 WILD-TYPE 
            11            144 
[1] "OR2M2 MUTATION ANALYSIS"
[1] 3
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              6             149 
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              6             149 
[1] "INHBA MUTATION ANALYSIS"
[1] 3
  INHBA MUTATED INHBA WILD-TYPE 
              7             148 
  INHBA MUTATED INHBA WILD-TYPE 
              7             148 
[1] "PDZRN4 MUTATION ANALYSIS"
[1] 3
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
              12              143 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
              12              143 
[1] "SPATA17 MUTATION ANALYSIS"
[1] 3
  SPATA17 MUTATED SPATA17 WILD-TYPE 
                7               148 
  SPATA17 MUTATED SPATA17 WILD-TYPE 
                7               148 
[1] "COL1A2 MUTATION ANALYSIS"
[1] 3
  COL1A2 MUTATED COL1A2 WILD-TYPE 
              15              140 
  COL1A2 MUTATED COL1A2 WILD-TYPE 
              15              140 
[1] "DSEL MUTATION ANALYSIS"
[1] 3
  DSEL MUTATED DSEL WILD-TYPE 
            12            143 
  DSEL MUTATED DSEL WILD-TYPE 
            12            143 
[1] "RNF43 MUTATION ANALYSIS"
[1] 3
  RNF43 MUTATED RNF43 WILD-TYPE 
             10             145 
  RNF43 MUTATED RNF43 WILD-TYPE 
             10             145 
[1] "IDH2 MUTATION ANALYSIS"
[1] 3
  IDH2 MUTATED IDH2 WILD-TYPE 
             7            148 
  IDH2 MUTATED IDH2 WILD-TYPE 
             7            148 
[1] "RIMS2 MUTATION ANALYSIS"
[1] 3
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             12             143 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             12             143 
[1] "SLC16A7 MUTATION ANALYSIS"
[1] 3
  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
                8               147 
  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
                8               147 
[1] "LRRIQ3 MUTATION ANALYSIS"
[1] 3
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
               7              148 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
               7              148 
[1] "ABCA12 MUTATION ANALYSIS"
[1] 3
  ABCA12 MUTATED ABCA12 WILD-TYPE 
              18              137 
  ABCA12 MUTATED ABCA12 WILD-TYPE 
              18              137 
[1] "COL6A6 MUTATION ANALYSIS"
[1] 3
  COL6A6 MUTATED COL6A6 WILD-TYPE 
              14              141 
  COL6A6 MUTATED COL6A6 WILD-TYPE 
              14              141 
[1] "ANGPTL5 MUTATION ANALYSIS"
[1] 3
  ANGPTL5 MUTATED ANGPTL5 WILD-TYPE 
                7               148 
  ANGPTL5 MUTATED ANGPTL5 WILD-TYPE 
                7               148 
[1] "TRPC4 MUTATION ANALYSIS"
[1] 3
  TRPC4 MUTATED TRPC4 WILD-TYPE 
             12             143 
  TRPC4 MUTATED TRPC4 WILD-TYPE 
             12             143 
[1] "CNTNAP4 MUTATION ANALYSIS"
[1] 3
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
               10               145 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
               10               145 
[1] "CDH18 MUTATION ANALYSIS"
[1] 3
  CDH18 MUTATED CDH18 WILD-TYPE 
             10             145 
  CDH18 MUTATED CDH18 WILD-TYPE 
             10             145 
[1] "UBE2NL MUTATION ANALYSIS"
[1] 3
  UBE2NL MUTATED UBE2NL WILD-TYPE 
               5              150 
  UBE2NL MUTATED UBE2NL WILD-TYPE 
               5              150 
[1] "CD1E MUTATION ANALYSIS"
[1] 3
  CD1E MUTATED CD1E WILD-TYPE 
             5            150 
  CD1E MUTATED CD1E WILD-TYPE 
             5            150 
[1] "OLFML1 MUTATION ANALYSIS"
[1] 3
  OLFML1 MUTATED OLFML1 WILD-TYPE 
               7              148 
  OLFML1 MUTATED OLFML1 WILD-TYPE 
               7              148 
[1] "OR10G9 MUTATION ANALYSIS"
[1] 3
  OR10G9 MUTATED OR10G9 WILD-TYPE 
               5              150 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
               5              150 
[1] "ZNF429 MUTATION ANALYSIS"
[1] 3
  ZNF429 MUTATED ZNF429 WILD-TYPE 
               7              148 
  ZNF429 MUTATED ZNF429 WILD-TYPE 
               7              148 
[1] "SAT1 MUTATION ANALYSIS"
[1] 3
  SAT1 MUTATED SAT1 WILD-TYPE 
             4            151 
  SAT1 MUTATED SAT1 WILD-TYPE 
             4            151 
[1] "ZNF536 MUTATION ANALYSIS"
[1] 3
  ZNF536 MUTATED ZNF536 WILD-TYPE 
              13              142 
  ZNF536 MUTATED ZNF536 WILD-TYPE 
              13              142 
[1] "CDH2 MUTATION ANALYSIS"
[1] 3
  CDH2 MUTATED CDH2 WILD-TYPE 
            12            143 
  CDH2 MUTATED CDH2 WILD-TYPE 
            12            143 
[1] "GALNT14 MUTATION ANALYSIS"
[1] 3
  GALNT14 MUTATED GALNT14 WILD-TYPE 
                9               146 
  GALNT14 MUTATED GALNT14 WILD-TYPE 
                9               146 
[1] "COL22A1 MUTATION ANALYSIS"
[1] 3
  COL22A1 MUTATED COL22A1 WILD-TYPE 
               14               141 
  COL22A1 MUTATED COL22A1 WILD-TYPE 
               14               141 
[1] "CSMD1 MUTATION ANALYSIS"
[1] 3
  CSMD1 MUTATED CSMD1 WILD-TYPE 
             17             138 
  CSMD1 MUTATED CSMD1 WILD-TYPE 
             17             138 
[1] "OR52H1 MUTATION ANALYSIS"
[1] 3
  OR52H1 MUTATED OR52H1 WILD-TYPE 
               5              150 
  OR52H1 MUTATED OR52H1 WILD-TYPE 
               5              150 
[1] "ODZ1 MUTATION ANALYSIS"
[1] 3
  ODZ1 MUTATED ODZ1 WILD-TYPE 
            17            138 
  ODZ1 MUTATED ODZ1 WILD-TYPE 
            17            138 
[1] "SCN11A MUTATION ANALYSIS"
[1] 3
  SCN11A MUTATED SCN11A WILD-TYPE 
              15              140 
  SCN11A MUTATED SCN11A WILD-TYPE 
              15              140 
[1] "NLRP5 MUTATION ANALYSIS"
[1] 3
  NLRP5 MUTATED NLRP5 WILD-TYPE 
             10             145 
  NLRP5 MUTATED NLRP5 WILD-TYPE 
             10             145 
[1] "BCHE MUTATION ANALYSIS"
[1] 3
  BCHE MUTATED BCHE WILD-TYPE 
             7            148 
  BCHE MUTATED BCHE WILD-TYPE 
             7            148 
[1] "PROKR1 MUTATION ANALYSIS"
[1] 3
  PROKR1 MUTATED PROKR1 WILD-TYPE 
               8              147 
  PROKR1 MUTATED PROKR1 WILD-TYPE 
               8              147 
[1] "TECTA MUTATION ANALYSIS"
[1] 3
  TECTA MUTATED TECTA WILD-TYPE 
             17             138 
  TECTA MUTATED TECTA WILD-TYPE 
             17             138 
[1] "SGCZ MUTATION ANALYSIS"
[1] 3
  SGCZ MUTATED SGCZ WILD-TYPE 
             6            149 
  SGCZ MUTATED SGCZ WILD-TYPE 
             6            149 
[1] "PTH2R MUTATION ANALYSIS"
[1] 3
  PTH2R MUTATED PTH2R WILD-TYPE 
              6             149 
  PTH2R MUTATED PTH2R WILD-TYPE 
              6             149 
[1] "ADAMTS5 MUTATION ANALYSIS"
[1] 3
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
               11               144 
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
               11               144 
[1] "CHRDL1 MUTATION ANALYSIS"
[1] 3
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
               7              148 
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
               7              148 
[1] "OR52J3 MUTATION ANALYSIS"
[1] 3
  OR52J3 MUTATED OR52J3 WILD-TYPE 
               5              150 
  OR52J3 MUTATED OR52J3 WILD-TYPE 
               5              150 
[1] "MYO16 MUTATION ANALYSIS"
[1] 3
  MYO16 MUTATED MYO16 WILD-TYPE 
             15             140 
  MYO16 MUTATED MYO16 WILD-TYPE 
             15             140 
[1] "TGFBR2 MUTATION ANALYSIS"
[1] 3
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
               7              148 
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
               7              148 
[1] "CDH8 MUTATION ANALYSIS"
[1] 3
  CDH8 MUTATED CDH8 WILD-TYPE 
            10            145 
  CDH8 MUTATED CDH8 WILD-TYPE 
            10            145 
[1] "PCBP1 MUTATION ANALYSIS"
[1] 3
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              4             151 
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              4             151 
[1] "ACSS3 MUTATION ANALYSIS"
[1] 3
  ACSS3 MUTATED ACSS3 WILD-TYPE 
              8             147 
  ACSS3 MUTATED ACSS3 WILD-TYPE 
              8             147 
[1] "JAKMIP2 MUTATION ANALYSIS"
[1] 3
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
               10               145 
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
               10               145 
[1] "PCDH15 MUTATION ANALYSIS"
[1] 3
  PCDH15 MUTATED PCDH15 WILD-TYPE 
              17              138 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
              17              138 
[1] "PSG7 MUTATION ANALYSIS"
[1] 3
  PSG7 MUTATED PSG7 WILD-TYPE 
             5            150 
  PSG7 MUTATED PSG7 WILD-TYPE 
             5            150 
[1] "PTPRM MUTATION ANALYSIS"
[1] 3
  PTPRM MUTATED PTPRM WILD-TYPE 
             14             141 
  PTPRM MUTATED PTPRM WILD-TYPE 
             14             141 
[1] "SLITRK1 MUTATION ANALYSIS"
[1] 3
  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
               10               145 
  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
               10               145 
[1] "CTNNB1 MUTATION ANALYSIS"
[1] 3
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               7              148 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               7              148 
[1] "RPS23 MUTATION ANALYSIS"
[1] 3
  RPS23 MUTATED RPS23 WILD-TYPE 
              4             151 
  RPS23 MUTATED RPS23 WILD-TYPE 
              4             151 
[1] "DOCK2 MUTATION ANALYSIS"
[1] 3
  DOCK2 MUTATED DOCK2 WILD-TYPE 
             16             139 
  DOCK2 MUTATED DOCK2 WILD-TYPE 
             16             139 
[1] "ME1 MUTATION ANALYSIS"
[1] 3
  ME1 MUTATED ME1 WILD-TYPE 
            7           148 
  ME1 MUTATED ME1 WILD-TYPE 
            7           148 
[1] "SIGLEC8 MUTATION ANALYSIS"
[1] 3
  SIGLEC8 MUTATED SIGLEC8 WILD-TYPE 
                6               149 
  SIGLEC8 MUTATED SIGLEC8 WILD-TYPE 
                6               149 
[1] "ACTBL2 MUTATION ANALYSIS"
[1] 3
  ACTBL2 MUTATED ACTBL2 WILD-TYPE 
               8              147 
  ACTBL2 MUTATED ACTBL2 WILD-TYPE 
               8              147 
[1] "ZMYM6 MUTATION ANALYSIS"
[1] 3
  ZMYM6 MUTATED ZMYM6 WILD-TYPE 
              9             146 
  ZMYM6 MUTATED ZMYM6 WILD-TYPE 
              9             146 
[1] "PTN MUTATION ANALYSIS"
[1] 3
  PTN MUTATED PTN WILD-TYPE 
            4           151 
  PTN MUTATED PTN WILD-TYPE 
            4           151 
[1] "SPATA16 MUTATION ANALYSIS"
[1] 3
  SPATA16 MUTATED SPATA16 WILD-TYPE 
                7               148 
  SPATA16 MUTATED SPATA16 WILD-TYPE 
                7               148 
[1] "C20ORF71 MUTATION ANALYSIS"
[1] 3
  C20ORF71 MUTATED C20ORF71 WILD-TYPE 
                 4                151 
  C20ORF71 MUTATED C20ORF71 WILD-TYPE 
                 4                151 
[1] "CD180 MUTATION ANALYSIS"
[1] 3
  CD180 MUTATED CD180 WILD-TYPE 
              8             147 
  CD180 MUTATED CD180 WILD-TYPE 
              8             147 
[1] "DPP10 MUTATION ANALYSIS"
[1] 3
  DPP10 MUTATED DPP10 WILD-TYPE 
              9             146 
  DPP10 MUTATED DPP10 WILD-TYPE 
              9             146 
[1] "OR10S1 MUTATION ANALYSIS"
[1] 3
  OR10S1 MUTATED OR10S1 WILD-TYPE 
               6              149 
  OR10S1 MUTATED OR10S1 WILD-TYPE 
               6              149 
[1] "OR13C3 MUTATION ANALYSIS"
[1] 3
  OR13C3 MUTATED OR13C3 WILD-TYPE 
               5              150 
  OR13C3 MUTATED OR13C3 WILD-TYPE 
               5              150 
[1] "KIRREL3 MUTATION ANALYSIS"
[1] 3
  KIRREL3 MUTATED KIRREL3 WILD-TYPE 
                9               146 
  KIRREL3 MUTATED KIRREL3 WILD-TYPE 
                9               146 
[1] "GRIN2A MUTATION ANALYSIS"
[1] 3
  GRIN2A MUTATED GRIN2A WILD-TYPE 
              15              140 
  GRIN2A MUTATED GRIN2A WILD-TYPE 
              15              140 
[1] "MDGA2 MUTATION ANALYSIS"
[1] 3
  MDGA2 MUTATED MDGA2 WILD-TYPE 
              8             147 
  MDGA2 MUTATED MDGA2 WILD-TYPE 
              8             147 
[1] "ADAM7 MUTATION ANALYSIS"
[1] 3
  ADAM7 MUTATED ADAM7 WILD-TYPE 
              9             146 
  ADAM7 MUTATED ADAM7 WILD-TYPE 
              9             146 
[1] "OR52N1 MUTATION ANALYSIS"
[1] 3
  OR52N1 MUTATED OR52N1 WILD-TYPE 
               6              149 
  OR52N1 MUTATED OR52N1 WILD-TYPE 
               6              149 
[1] "GPC6 MUTATION ANALYSIS"
[1] 3
  GPC6 MUTATED GPC6 WILD-TYPE 
             7            148 
  GPC6 MUTATED GPC6 WILD-TYPE 
             7            148 
[1] "CDON MUTATION ANALYSIS"
[1] 3
  CDON MUTATED CDON WILD-TYPE 
            13            142 
  CDON MUTATED CDON WILD-TYPE 
            13            142 
[1] "CHST10 MUTATION ANALYSIS"
[1] 3
  CHST10 MUTATED CHST10 WILD-TYPE 
               7              148 
  CHST10 MUTATED CHST10 WILD-TYPE 
               7              148 
[1] "UNC13C MUTATION ANALYSIS"
[1] 3
  UNC13C MUTATED UNC13C WILD-TYPE 
              12              143 
  UNC13C MUTATED UNC13C WILD-TYPE 
              12              143 
[1] "C22ORF23 MUTATION ANALYSIS"
[1] 3
  C22ORF23 MUTATED C22ORF23 WILD-TYPE 
                 5                150 
  C22ORF23 MUTATED C22ORF23 WILD-TYPE 
                 5                150 
[1] "ADCY2 MUTATION ANALYSIS"
[1] 3
  ADCY2 MUTATED ADCY2 WILD-TYPE 
             11             144 
  ADCY2 MUTATED ADCY2 WILD-TYPE 
             11             144 
[1] "RHOA MUTATION ANALYSIS"
[1] 3
  RHOA MUTATED RHOA WILD-TYPE 
             4            151 
  RHOA MUTATED RHOA WILD-TYPE 
             4            151 
[1] "SLCO1B3 MUTATION ANALYSIS"
[1] 3
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
                7               148 
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
                7               148 
[1] "BAI3 MUTATION ANALYSIS"
[1] 3
  BAI3 MUTATED BAI3 WILD-TYPE 
            12            143 
  BAI3 MUTATED BAI3 WILD-TYPE 
            12            143 
[1] "LRP2 MUTATION ANALYSIS"
[1] 3
  LRP2 MUTATED LRP2 WILD-TYPE 
            28            127 
  LRP2 MUTATED LRP2 WILD-TYPE 
            28            127 
[1] "LUZP2 MUTATION ANALYSIS"
[1] 3
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              4             151 
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              4             151 
[1] "MAP2 MUTATION ANALYSIS"
[1] 3
  MAP2 MUTATED MAP2 WILD-TYPE 
            14            141 
  MAP2 MUTATED MAP2 WILD-TYPE 
            14            141 
[1] "PRDM2 MUTATION ANALYSIS"
[1] 3
  PRDM2 MUTATED PRDM2 WILD-TYPE 
             13             142 
  PRDM2 MUTATED PRDM2 WILD-TYPE 
             13             142 
[1] "HTR2C MUTATION ANALYSIS"
[1] 3
  HTR2C MUTATED HTR2C WILD-TYPE 
              6             149 
  HTR2C MUTATED HTR2C WILD-TYPE 
              6             149 
[1] "PLSCR2 MUTATION ANALYSIS"
[1] 3
  PLSCR2 MUTATED PLSCR2 WILD-TYPE 
               5              150 
  PLSCR2 MUTATED PLSCR2 WILD-TYPE 
               5              150 
[1] "PWP1 MUTATION ANALYSIS"
[1] 3
  PWP1 MUTATED PWP1 WILD-TYPE 
             7            148 
  PWP1 MUTATED PWP1 WILD-TYPE 
             7            148 
[1] "COL4A5 MUTATION ANALYSIS"
[1] 3
  COL4A5 MUTATED COL4A5 WILD-TYPE 
              13              142 
  COL4A5 MUTATED COL4A5 WILD-TYPE 
              13              142 
[1] "RYR3 MUTATION ANALYSIS"
[1] 3
  RYR3 MUTATED RYR3 WILD-TYPE 
            19            136 
  RYR3 MUTATED RYR3 WILD-TYPE 
            19            136 
[1] "SLC8A1 MUTATION ANALYSIS"
[1] 3
  SLC8A1 MUTATED SLC8A1 WILD-TYPE 
              11              144 
  SLC8A1 MUTATED SLC8A1 WILD-TYPE 
              11              144 
[1] "TMBIM4 MUTATION ANALYSIS"
[1] 3
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               3              152 
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               3              152 
[1] "ZNF677 MUTATION ANALYSIS"
[1] 3
  ZNF677 MUTATED ZNF677 WILD-TYPE 
               8              147 
  ZNF677 MUTATED ZNF677 WILD-TYPE 
               8              147 
[1] "FAM133A MUTATION ANALYSIS"
[1] 3
  FAM133A MUTATED FAM133A WILD-TYPE 
                5               150 
  FAM133A MUTATED FAM133A WILD-TYPE 
                5               150 
[1] "ZNF208 MUTATION ANALYSIS"
[1] 3
  ZNF208 MUTATED ZNF208 WILD-TYPE 
               8              147 
  ZNF208 MUTATED ZNF208 WILD-TYPE 
               8              147 
[1] "ARFIP1 MUTATION ANALYSIS"
[1] 3
  ARFIP1 MUTATED ARFIP1 WILD-TYPE 
               5              150 
  ARFIP1 MUTATED ARFIP1 WILD-TYPE 
               5              150 
[1] "ADAMTS12 MUTATION ANALYSIS"
[1] 3
  ADAMTS12 MUTATED ADAMTS12 WILD-TYPE 
                14                141 
  ADAMTS12 MUTATED ADAMTS12 WILD-TYPE 
                14                141 
[1] "ASB5 MUTATION ANALYSIS"
[1] 3
  ASB5 MUTATED ASB5 WILD-TYPE 
             6            149 
  ASB5 MUTATED ASB5 WILD-TYPE 
             6            149 
[1] "INSL6 MUTATION ANALYSIS"
[1] 3
  INSL6 MUTATED INSL6 WILD-TYPE 
              5             150 
  INSL6 MUTATED INSL6 WILD-TYPE 
              5             150 
[1] "MAGEB1 MUTATION ANALYSIS"
[1] 3
  MAGEB1 MUTATED MAGEB1 WILD-TYPE 
               6              149 
  MAGEB1 MUTATED MAGEB1 WILD-TYPE 
               6              149 
[1] "SEC11C MUTATION ANALYSIS"
[1] 3
  SEC11C MUTATED SEC11C WILD-TYPE 
               4              151 
  SEC11C MUTATED SEC11C WILD-TYPE 
               4              151 
[1] "TUBA3C MUTATION ANALYSIS"
[1] 3
  TUBA3C MUTATED TUBA3C WILD-TYPE 
               8              147 
  TUBA3C MUTATED TUBA3C WILD-TYPE 
               8              147 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "HISTOLOGICALTYPE"                      
[11] "PATHOLOGICSPREAD(PT)"                  
[12] "PATHOLOGICSPREAD(PN)"                  
[13] "PATHOLOGICSPREAD(M)"                   
[14] "TUMORSTAGE"                            
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "BATCHNUMBER"                           

Input Data has 16 rows and 155 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
         423          503          523          447          541          437 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3514 TCGA-AA-3516 
         472          332          278          246           NA           NA 
TCGA-AA-3517 TCGA-AA-3518 TCGA-AA-3519 TCGA-AA-3520 TCGA-AA-3521 TCGA-AA-3522 
          NA           31           NA           NA           NA           NA 
TCGA-AA-3524 TCGA-AA-3525 TCGA-AA-3526 TCGA-AA-3527 TCGA-AA-3529 TCGA-AA-3530 
          NA           NA           30           NA           NA           NA 
TCGA-AA-3531 TCGA-AA-3532 TCGA-AA-3534 TCGA-AA-3538 TCGA-AA-3542 TCGA-AA-3543 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3544 TCGA-AA-3548 TCGA-AA-3549 TCGA-AA-3552 TCGA-AA-3553 TCGA-AA-3554 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3555 TCGA-AA-3556 TCGA-AA-3558 TCGA-AA-3560 TCGA-AA-3561 TCGA-AA-3562 
          30           NA           NA           NA           NA           31 
TCGA-AA-3664 TCGA-AA-3666 TCGA-AA-3667 TCGA-AA-3672 TCGA-AA-3673 TCGA-AA-3678 
          NA           31           NA           NA           NA           NA 
TCGA-AA-3679 TCGA-AA-3680 TCGA-AA-3681 TCGA-AA-3684 TCGA-AA-3685 TCGA-AA-3688 
          30           NA           NA           NA           30           NA 
TCGA-AA-3692 TCGA-AA-3693 TCGA-AA-3695 TCGA-AA-3696 TCGA-AA-3710 TCGA-AA-3715 
          NA           NA           NA           NA           31           30 
TCGA-AA-3811 TCGA-AA-3812 TCGA-AA-3814 TCGA-AA-3818 TCGA-AA-3819 TCGA-AA-3821 
          30           NA           NA           NA           NA           NA 
TCGA-AA-3831 TCGA-AA-3833 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3845 
          NA           NA           31           31           28           NA 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3850 TCGA-AA-3851 TCGA-AA-3852 TCGA-AA-3854 
          30           30           NA           NA           NA           31 
TCGA-AA-3855 TCGA-AA-3856 TCGA-AA-3858 TCGA-AA-3860 TCGA-AA-3864 TCGA-AA-3866 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3867 TCGA-AA-3869 TCGA-AA-3870 TCGA-AA-3872 TCGA-AA-3875 TCGA-AA-3877 
          NA           NA           NA           NA           NA           30 
TCGA-AA-3930 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
          NA           30           31           30           30           31 
TCGA-AA-3955 TCGA-AA-3956 TCGA-AA-3966 TCGA-AA-3971 TCGA-AA-3972 TCGA-AA-3973 
          NA           NA           31           NA           NA           NA 
TCGA-AA-3975 TCGA-AA-3976 TCGA-AA-3977 TCGA-AA-3979 TCGA-AA-3980 TCGA-AA-3982 
          30           NA           31           NA           NA           NA 
TCGA-AA-3984 TCGA-AA-3986 TCGA-AA-3989 TCGA-AA-3994 TCGA-AA-A004 TCGA-AA-A00A 
          NA           30           NA           NA          424          548 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
         578          913         1035          548          548          517 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
          NA          822          822           30          517          456 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
         669          638          457           30          396          365 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
         365          396           NA           31         1065           31 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A022 TCGA-AA-A024 
        1005         1065          791          638           NA         1188 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
        1580         1215           61          153           28         1246 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
        1215          548         1245          496           29 
Variable 1:'AGE':	nDistinctValues=46,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=10,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=39,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=8,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=36,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'PATHOLOGY.T':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.N':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'TUMOR.STAGE':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=12,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                 "GENDER"              "HISTOLOGICAL.TYPE"  
[4] "PATHOLOGY.T"         "PATHOLOGY.N"         "PATHOLOGICSPREAD(M)"
[7] "TUMOR.STAGE"        
[1] "TUMOR.?STAGE" "7"           
[1] "stage2"
vv
 1  2  3  4 
30 57 44 21 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "4"          
[1] "PATHOLOGY.N" "5"          
Output Data has 155 columns, 1 survival variables, and 7 non-survival variables.
AGE, nv=46, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=2, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
  4  33 103  14 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
  4  33 103  14 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
  4  33 103  14 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
  4  33 103  14 
PATHOLOGY.N, nv=3, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
N0 N1 N2 
91 30 34 
[1] "table(vv)"
vv
N0 N1 N2 
91 30 34 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
N0 N1 N2 
91 30 34 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


N0 N1 N2 
91 30 34 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
 30  57  44  21 
[1] "table(vv)"
vv
  I  II III  IV 
 30  57  44  21 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 30  57  44  21 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 30  57  44  21 

Clustering(1) Variable = APC MUTATION ANALYSIS
D1V1, survival
               sevent
clus2            0  1
  APC MUTATED   44  9
  APC WILD-TYPE 24  2
  APC MUTATED APC WILD-TYPE 
           53            26 
  APC MUTATED APC WILD-TYPE 
            9             2 
$`APC MUTATED`
TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3555 
       17.19        17.79        10.92         9.14         8.09         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99         1.02        18.02 
TCGA-AA-A00D TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       19.00        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01F 
       17.00        14.99        21.99        20.98        15.02        13.02 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AY-4071 
        5.03         0.92        40.96        18.02         0.95 

$`APC WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-2683 TCGA-AA-3518 
       13.91        16.54        14.70        14.37        15.52         1.02 
TCGA-AA-3526 TCGA-AA-3811 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3877 TCGA-AA-3949 
        0.99         0.99         1.02         0.92         0.99         0.99 
TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00Q 
        1.02         0.99        13.94        30.02        34.03        27.02 
TCGA-AA-A00R TCGA-AA-A01D TCGA-AA-A01G TCGA-AA-A01P TCGA-AA-A01X TCGA-AA-A02Y 
        0.99         0.99        12.00        38.07        26.01        39.95 
TCGA-AA-A03J TCGA-AY-4070 
       40.93        16.31 

  APC MUTATED APC WILD-TYPE 
         0.92          0.92 
  APC MUTATED APC WILD-TYPE 
        51.95         40.93 
  APC MUTATED APC WILD-TYPE 
        9.140        13.925 
[1] "0.9 - 52.0 (9.1)"  "0.9 - 40.9 (13.9)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "APC MUTATED" "APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"APC WILD-TYPE"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "APC MUTATED"   "APC MUTATED"   "APC MUTATED"   "APC MUTATED" "APC WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
  "APC MUTATED" "APC WILD-TYPE" "APC WILD-TYPE"   "APC MUTATED" 
[1] "hr=" "2.2"
D1V2, continuous
D1V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED     45   58
  APC WILD-TYPE   32   20
        clus
vv       APC MUTATED APC WILD-TYPE
  FEMALE          45            32
  MALE            58            20
D1V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  APC MUTATED     86   15
  APC WILD-TYPE   42    9
                               clus
vv                              APC MUTATED APC WILD-TYPE
  COLON ADENOCARCINOMA                   86            42
  COLON MUCINOUS ADENOCARCINOMA          15             9
D1V5, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  T1           2             2
  T2          21            12
  T3          70            33
  T4          10             4
D1V6, multiclass
    clus
vv   APC MUTATED APC WILD-TYPE
  N0          61            30
  N1          19            11
  N2          23            11
D1V7, multiclass
     clus
vv    APC MUTATED APC WILD-TYPE
  M0           82            48
  M1           17             4
  M1A           1             0
D1V8, multiclass
     clus
vv    APC MUTATED APC WILD-TYPE
  I            19            11
  II           39            18
  III          25            19
  IV           17             4

Clustering(2) Variable = KRAS MUTATION ANALYSIS
D2V1, survival
                sevent
clus2             0  1
  KRAS MUTATED   30  3
  KRAS WILD-TYPE 38  8
  KRAS MUTATED KRAS WILD-TYPE 
            33             46 
  KRAS MUTATED KRAS WILD-TYPE 
             3              8 
$`KRAS MUTATED`
TCGA-A6-2683 TCGA-A6-3808 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 
       15.52         9.14         0.99         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 
        1.02         0.92         0.99         1.02         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A00A TCGA-AA-A00K TCGA-AA-A00N 
        0.99         1.02         0.99        18.02        18.02         4.01 
TCGA-AA-A00Q TCGA-AA-A00W TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       27.02        14.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01R TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02O TCGA-AA-A02W 
       35.01        26.01        20.98        51.95         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
       39.95        18.02        40.93 

$`KRAS WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 
       10.92         8.09         1.02         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3846 TCGA-AA-3877 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-A004 TCGA-AA-A00D 
        0.99         0.99         1.02         1.02        13.94        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00R 
       30.02        34.03        18.02        17.00        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01P 
       17.00        21.99        20.98        15.02         0.99        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A024 TCGA-AA-A02F 
        1.02         1.02        33.04        35.01        39.06        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AY-4070 TCGA-AY-4071 
        2.01         5.03        16.31         0.95 

  KRAS MUTATED KRAS WILD-TYPE 
          0.92           0.95 
  KRAS MUTATED KRAS WILD-TYPE 
         51.95          39.95 
  KRAS MUTATED KRAS WILD-TYPE 
        12.000         12.415 
[1] "0.9 - 52.0 (12.0)" "0.9 - 40.0 (12.4)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE"   "KRAS MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"KRAS WILD-TYPE"   "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"KRAS WILD-TYPE"   "KRAS MUTATED"   "KRAS MUTATED" "KRAS WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED"   "KRAS MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
  "KRAS MUTATED" "KRAS WILD-TYPE" "KRAS WILD-TYPE" 
[1] "hr=" "2.3"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     25   33
  KRAS WILD-TYPE   52   45
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  FEMALE           25             52
  MALE             33             45
D2V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  KRAS MUTATED     46   10
  KRAS WILD-TYPE   82   14
                               clus
vv                              KRAS MUTATED KRAS WILD-TYPE
  COLON ADENOCARCINOMA                    46             82
  COLON MUCINOUS ADENOCARCINOMA           10             14
D2V5, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  T1            1              3
  T2           13             20
  T3           39             64
  T4            5              9
D2V6, multiclass
    clus
vv   KRAS MUTATED KRAS WILD-TYPE
  N0           38             53
  N1            9             21
  N2           11             23
D2V7, multiclass
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  M0            49             81
  M1             6             15
  M1A            1              0
D2V8, multiclass
     clus
vv    KRAS MUTATED KRAS WILD-TYPE
  I             10             20
  II            25             32
  III           14             30
  IV             7             14

Clustering(3) Variable = TP53 MUTATION ANALYSIS
D3V1, survival
                sevent
clus2             0  1
  TP53 MUTATED   37  5
  TP53 WILD-TYPE 31  6
  TP53 MUTATED TP53 WILD-TYPE 
            42             37 
  TP53 MUTATED TP53 WILD-TYPE 
             5              6 
$`TP53 MUTATED`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        17.19        14.70        14.37        15.52        10.92 
TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 
        8.09         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.92         0.99         1.02         0.99 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99         1.02        13.94        19.00        30.02        34.03 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00W TCGA-AA-A010 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        27.02        14.99        20.98         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01Z TCGA-AA-A02F 
       12.00        13.02         1.02        33.04        20.98        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
        2.01         5.03        40.96        40.93        16.31         0.95 

$`TP53 WILD-TYPE`
TCGA-A6-2672 TCGA-A6-2677 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3710 
       16.54        17.79         9.14         1.02         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3877 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A00A 
        0.99         0.99         1.02         1.02         0.99        18.02 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00N TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        18.02         4.01        27.02         0.99        17.00 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       21.99        15.02        12.00        38.07         1.02        35.01 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02O TCGA-AA-A02Y 
       35.01        26.01        39.06        51.95         0.92        39.95 
TCGA-AA-A03F 
       18.02 

  TP53 MUTATED TP53 WILD-TYPE 
          0.92           0.92 
  TP53 MUTATED TP53 WILD-TYPE 
         40.96          51.95 
  TP53 MUTATED TP53 WILD-TYPE 
         12.51           9.14 
[1] "0.9 - 41.0 (12.5)" "0.9 - 52.0 (9.1)" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
[1] "hr=" "1.3"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     34   41
  TP53 WILD-TYPE   43   37
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           34             43
  MALE             41             37
D3V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     68    5
  TP53 WILD-TYPE   60   19
                               clus
vv                              TP53 MUTATED TP53 WILD-TYPE
  COLON ADENOCARCINOMA                    68             60
  COLON MUCINOUS ADENOCARCINOMA            5             19
D3V5, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  T1            3              1
  T2           17             16
  T3           49             54
  T4            5              9
D3V6, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  N0           39             52
  N1           16             14
  N2           20             14
D3V7, multiclass
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  M0            60             70
  M1            11             10
  M1A            1              0
D3V8, multiclass
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  I             15             15
  II            20             37
  III           26             18
  IV            11             10

Clustering(4) Variable = SMAD4 MUTATION ANALYSIS
D4V1, survival
                 sevent
clus2              0  1
  SMAD4 MUTATED    7  1
  SMAD4 WILD-TYPE 61 10
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              8              71 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
              1              10 
$`SMAD4 MUTATED`
TCGA-A6-2676 TCGA-A6-2678 TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3811 TCGA-AA-A00K 
       14.70        14.37         0.99         1.02         0.99        18.02 
TCGA-AA-A01D TCGA-AA-A02O 
        0.99         0.92 

$`SMAD4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2683 TCGA-A6-3807 
       13.91        16.54        17.19        17.79        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3679 
        9.14         8.09         1.02         0.99         1.02         0.99 
TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        0.92         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W 
       39.06        51.95        39.95         2.01         5.03        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  SMAD4 MUTATED SMAD4 WILD-TYPE 
           0.92            0.92 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
          18.02           51.95 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
          1.005          12.000 
[1] "0.9 - 18.0 (1.0)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE"   "SMAD4 MUTATED" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "SMAD4 MUTATED" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" "SMAD4 WILD-TYPE" 
[1] "hr=" "1.8"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED     10    8
  SMAD4 WILD-TYPE   67   70
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  FEMALE            10              67
  MALE               8              70
D4V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD4 MUTATED     12    5
  SMAD4 WILD-TYPE  116   19
                               clus
vv                              SMAD4 MUTATED SMAD4 WILD-TYPE
  COLON ADENOCARCINOMA                     12             116
  COLON MUCINOUS ADENOCARCINOMA             5              19
D4V5, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  T1             0               4
  T2             3              30
  T3            13              90
  T4             1              13
D4V6, multiclass
    clus
vv   SMAD4 MUTATED SMAD4 WILD-TYPE
  N0            12              79
  N1             3              27
  N2             3              31
D4V7, multiclass
     clus
vv    SMAD4 MUTATED SMAD4 WILD-TYPE
  M0             15             115
  M1              2              19
  M1A             0               1
D4V8, multiclass
     clus
vv    SMAD4 MUTATED SMAD4 WILD-TYPE
  I               2              28
  II              9              48
  III             4              40
  IV              2              19

Clustering(5) Variable = FBXW7 MUTATION ANALYSIS
D5V1, survival
                 sevent
clus2              0  1
  FBXW7 MUTATED   13  2
  FBXW7 WILD-TYPE 55  9
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             15              64 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
              2               9 
$`FBXW7 MUTATED`
TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-3807 TCGA-AA-3518 TCGA-AA-3837 
       16.54        14.70        17.79        10.92         1.02         1.02 
TCGA-AA-3848 TCGA-AA-3949 TCGA-AA-A00J TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R 
        0.99         0.99        18.02        13.02         1.02        35.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A03F 
       20.98        39.06        18.02 

$`FBXW7 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3808 TCGA-A6-3810 
       13.91        17.19        14.37        15.52         9.14         8.09 
TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3844 
        1.02         0.99         0.99         0.99         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        34.03        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       12.00        38.07         1.02        33.04        35.01        26.01 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        40.93        16.31         0.95 

  FBXW7 MUTATED FBXW7 WILD-TYPE 
           0.99            0.92 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
          39.06           51.95 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
         14.700           8.615 
[1] "1.0 - 39.1 (14.7)" "0.9 - 52.0 (8.6)" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "FBXW7 MUTATED"   "FBXW7 MUTATED" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED"   "FBXW7 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE"   "FBXW7 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" "FBXW7 WILD-TYPE" 
[1] "hr=" "1.2"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED     18   11
  FBXW7 WILD-TYPE   59   67
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  FEMALE            18              59
  MALE              11              67
D5V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FBXW7 MUTATED     18   10
  FBXW7 WILD-TYPE  110   14
                               clus
vv                              FBXW7 MUTATED FBXW7 WILD-TYPE
  COLON ADENOCARCINOMA                     18             110
  COLON MUCINOUS ADENOCARCINOMA            10              14
D5V5, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  T1             0               4
  T2             2              31
  T3            24              79
  T4             2              12
D5V6, multiclass
    clus
vv   FBXW7 MUTATED FBXW7 WILD-TYPE
  N0            15              76
  N1             6              24
  N2             8              26
D5V7, multiclass
     clus
vv    FBXW7 MUTATED FBXW7 WILD-TYPE
  M0             29             101
  M1              0              21
  M1A             0               1
D5V8, multiclass
     clus
vv    FBXW7 MUTATED FBXW7 WILD-TYPE
  I               2              28
  II             13              44
  III            14              30
  IV              0              21

Clustering(6) Variable = NRAS MUTATION ANALYSIS
D6V1, survival
                sevent
clus2             0  1
  NRAS MUTATED    4  3
  NRAS WILD-TYPE 64  8
  NRAS MUTATED NRAS WILD-TYPE 
             7             72 
  NRAS MUTATED NRAS WILD-TYPE 
             3              8 
$`NRAS MUTATED`
TCGA-A6-2678 TCGA-AA-3666 TCGA-AA-A00F TCGA-AA-A00N TCGA-AA-A01V TCGA-AA-A024 
       14.37         1.02        34.03         4.01        35.01        39.06 
TCGA-AA-A02F 
       39.95 

$`NRAS WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2683 
       13.91        16.54        17.19        14.70        17.79        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       26.01        20.98        51.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  NRAS MUTATED NRAS WILD-TYPE 
          1.02           0.92 
  NRAS MUTATED NRAS WILD-TYPE 
         39.95          51.95 
  NRAS MUTATED NRAS WILD-TYPE 
         34.03          10.03 
[1] "1.0 - 40.0 (34.0)" "0.9 - 52.0 (10.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE"   "NRAS MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"NRAS WILD-TYPE"   "NRAS MUTATED" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"NRAS WILD-TYPE" "NRAS WILD-TYPE" "NRAS WILD-TYPE" 
[1] "hr=" "2.1"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED      3   12
  NRAS WILD-TYPE   74   66
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  FEMALE            3             74
  MALE             12             66
D6V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  NRAS MUTATED     13    2
  NRAS WILD-TYPE  115   22
                               clus
vv                              NRAS MUTATED NRAS WILD-TYPE
  COLON ADENOCARCINOMA                    13            115
  COLON MUCINOUS ADENOCARCINOMA            2             22
D6V5, multiclass
    clus
vv   NRAS MUTATED NRAS WILD-TYPE
  T1            0              4
  T2            5             28
  T3            8             95
  T4            2             12
D6V6, multiclass
    clus
vv   NRAS MUTATED NRAS WILD-TYPE
  N0            8             83
  N1            6             24
  N2            1             33
D6V7, multiclass
     clus
vv    NRAS MUTATED NRAS WILD-TYPE
  M0            11            119
  M1             3             18
  M1A            0              1
D6V8, multiclass
     clus
vv    NRAS MUTATED NRAS WILD-TYPE
  I              3             27
  II             4             53
  III            4             40
  IV             3             18

Clustering(7) Variable = PIK3CA MUTATION ANALYSIS
D7V1, survival
                  sevent
clus2               0  1
  PIK3CA MUTATED   15  3
  PIK3CA WILD-TYPE 53  8
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              18               61 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
               3                8 
$`PIK3CA MUTATED`
TCGA-A6-3808 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3848 TCGA-AA-3877 
        9.14         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01I 
        0.99         0.99         1.02         4.01        20.98        12.00 
TCGA-AA-A01K TCGA-AA-A01V TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
       13.02        35.01         0.92        39.95        18.02        40.93 

$`PIK3CA WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3941 TCGA-AA-3949 
        1.02         0.92         0.99         1.02         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01P TCGA-AA-A01Q 
       15.02         0.99        13.02        12.00        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
       35.01         1.02        33.04        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AY-4070 
       51.95        39.95         2.01         5.03        40.96        16.31 
TCGA-AY-4071 
        0.95 

  PIK3CA MUTATED PIK3CA WILD-TYPE 
            0.92             0.92 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
           40.93            51.95 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
           2.515           13.910 
[1] "0.9 - 40.9 (2.5)"  "0.9 - 52.0 (13.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
[1] "hr=" "1.3"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     12   14
  PIK3CA WILD-TYPE   65   64
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  FEMALE             12               65
  MALE               14               64
D7V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     19    7
  PIK3CA WILD-TYPE  109   17
                               clus
vv                              PIK3CA MUTATED PIK3CA WILD-TYPE
  COLON ADENOCARCINOMA                      19              109
  COLON MUCINOUS ADENOCARCINOMA              7               17
D7V5, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  T1              1                3
  T2              7               26
  T3             15               88
  T4              3               11
D7V6, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  N0             22               69
  N1              1               29
  N2              3               31
D7V7, multiclass
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  M0              24              106
  M1               1               20
  M1A              0                1
D7V8, multiclass
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  I                7               23
  II              14               43
  III              3               41
  IV               1               20

Clustering(8) Variable = FAM123B MUTATION ANALYSIS
D8V1, survival
                   sevent
clus2                0  1
  FAM123B MUTATED    6  1
  FAM123B WILD-TYPE 62 10
  FAM123B MUTATED FAM123B WILD-TYPE 
                7                72 
  FAM123B MUTATED FAM123B WILD-TYPE 
                1                10 
$`FAM123B MUTATED`
TCGA-A6-3808 TCGA-AA-3666 TCGA-AA-3939 TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A010 
        9.14         1.02         0.99         1.02        18.02        20.98 
TCGA-AA-A01D 
        0.99 

$`FAM123B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99         0.99        13.94        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  FAM123B MUTATED FAM123B WILD-TYPE 
             0.99              0.92 
  FAM123B MUTATED FAM123B WILD-TYPE 
            20.98             51.95 
  FAM123B MUTATED FAM123B WILD-TYPE 
             1.02             12.51 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (12.5)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM123B MUTATED" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM123B MUTATED" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
  "FAM123B MUTATED" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM123B MUTATED" "FAM123B WILD-TYPE"   "FAM123B MUTATED" "FAM123B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"FAM123B WILD-TYPE" "FAM123B WILD-TYPE" "FAM123B WILD-TYPE" 
[1] "hr=" "1.5"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM123B MUTATED     10    9
  FAM123B WILD-TYPE   67   69
        clus
vv       FAM123B MUTATED FAM123B WILD-TYPE
  FEMALE              10                67
  MALE                 9                69
D8V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM123B MUTATED     14    4
  FAM123B WILD-TYPE  114   20
                               clus
vv                              FAM123B MUTATED FAM123B WILD-TYPE
  COLON ADENOCARCINOMA                       14               114
  COLON MUCINOUS ADENOCARCINOMA               4                20
D8V5, multiclass
    clus
vv   FAM123B MUTATED FAM123B WILD-TYPE
  T1               0                 4
  T2               3                30
  T3              13                90
  T4               3                11
D8V6, multiclass
    clus
vv   FAM123B MUTATED FAM123B WILD-TYPE
  N0              13                78
  N1               1                29
  N2               5                29
D8V7, multiclass
     clus
vv    FAM123B MUTATED FAM123B WILD-TYPE
  M0               16               114
  M1                2                19
  M1A               0                 1
D8V8, multiclass
     clus
vv    FAM123B MUTATED FAM123B WILD-TYPE
  I                 2                28
  II               10                47
  III               4                40
  IV                2                19

Clustering(9) Variable = TTN MUTATION ANALYSIS
D9V1, survival
               sevent
clus2            0  1
  TTN MUTATED   35  6
  TTN WILD-TYPE 33  5
  TTN MUTATED TTN WILD-TYPE 
           41            38 
  TTN MUTATED TTN WILD-TYPE 
            6             5 
$`TTN MUTATED`
TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-3808 TCGA-AA-3555 TCGA-AA-3685 TCGA-AA-3710 
       14.70        17.79         9.14         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3844 TCGA-AA-3854 TCGA-AA-3877 
        0.99         0.99         0.99         0.92         1.02         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A00E TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00N TCGA-AA-A00O 
        0.99        30.02        18.02        18.02         4.01        27.02 
TCGA-AA-A00R TCGA-AA-A010 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01I TCGA-AA-A01P 
        0.99        20.98         0.99        13.02        12.00        38.07 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02H 
       35.01         1.02        35.01        20.98        51.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AY-4071 
        5.03         0.92        40.96        39.95         0.95 

$`TTN WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        16.54        17.19        14.37        15.52        10.92 
TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 
        8.09         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3939 TCGA-AA-3952 
        1.02         1.02         0.99         0.99         0.99         1.02 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00L TCGA-AA-A00Q 
       13.94        18.02        19.00        34.03        17.00        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01G TCGA-AA-A01K 
       17.00        14.99        21.99        15.02        12.00        13.02 
TCGA-AA-A01Q TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A03F 
        1.02        33.04        26.01        39.06        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 
       40.93        16.31 

  TTN MUTATED TTN WILD-TYPE 
         0.92          0.99 
  TTN MUTATED TTN WILD-TYPE 
        51.95         40.93 
  TTN MUTATED TTN WILD-TYPE 
         1.02         14.68 
[1] "0.9 - 52.0 (1.0)"  "1.0 - 40.9 (14.7)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
  "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
  "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"TTN WILD-TYPE"   "TTN MUTATED"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE"   "TTN MUTATED" "TTN WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
  "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED"   "TTN MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"TTN WILD-TYPE" "TTN WILD-TYPE" "TTN WILD-TYPE"   "TTN MUTATED" 
[1] "hr=" "1.3"
D9V2, continuous
D9V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TTN MUTATED     37   32
  TTN WILD-TYPE   40   46
        clus
vv       TTN MUTATED TTN WILD-TYPE
  FEMALE          37            40
  MALE            32            46
D9V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TTN MUTATED     51   16
  TTN WILD-TYPE   77    8
                               clus
vv                              TTN MUTATED TTN WILD-TYPE
  COLON ADENOCARCINOMA                   51            77
  COLON MUCINOUS ADENOCARCINOMA          16             8
D9V5, multiclass
    clus
vv   TTN MUTATED TTN WILD-TYPE
  T1           2             2
  T2          18            15
  T3          40            63
  T4           8             6
D9V6, multiclass
    clus
vv   TTN MUTATED TTN WILD-TYPE
  N0          46            45
  N1          12            18
  N2          11            23
D9V7, multiclass
     clus
vv    TTN MUTATED TTN WILD-TYPE
  M0           58            72
  M1            7            14
  M1A           1             0
D9V8, multiclass
     clus
vv    TTN MUTATED TTN WILD-TYPE
  I            18            12
  II           25            32
  III          16            28
  IV            8            13

Clustering(10) Variable = BRAF MUTATION ANALYSIS
D10V1, survival
                sevent
clus2             0  1
  BRAF MUTATED   10  1
  BRAF WILD-TYPE 58 10
  BRAF MUTATED BRAF WILD-TYPE 
            11             68 
  BRAF MUTATED BRAF WILD-TYPE 
             1             10 
$`BRAF MUTATED`
TCGA-A6-2672 TCGA-A6-2676 TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-3947 TCGA-AA-3949 
       16.54        14.70         0.99         0.99         0.99         0.99 
TCGA-AA-3966 TCGA-AA-A00D TCGA-AA-A00J TCGA-AA-A01D TCGA-AA-A01P 
        1.02        19.00        18.02         0.99        38.07 

$`BRAF WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        17.19        17.79        14.37        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       13.94        18.02        30.02        34.03        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        20.98        15.02        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  BRAF MUTATED BRAF WILD-TYPE 
          0.99           0.92 
  BRAF MUTATED BRAF WILD-TYPE 
         38.07          51.95 
  BRAF MUTATED BRAF WILD-TYPE 
          1.02          12.00 
[1] "1.0 - 38.1 (1.0)"  "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED"   "BRAF MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
[1] "hr=" "1.3"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED     14    6
  BRAF WILD-TYPE   63   72
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  FEMALE           14             63
  MALE              6             72
D10V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      9   11
  BRAF WILD-TYPE  119   13
                               clus
vv                              BRAF MUTATED BRAF WILD-TYPE
  COLON ADENOCARCINOMA                     9            119
  COLON MUCINOUS ADENOCARCINOMA           11             13
D10V5, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  T1            1              3
  T2            3             30
  T3           11             92
  T4            4             10
D10V6, multiclass
    clus
vv   BRAF MUTATED BRAF WILD-TYPE
  N0           11             80
  N1            5             25
  N2            4             30
D10V7, multiclass
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  M0            19            111
  M1             1             20
  M1A            0              1
D10V8, multiclass
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  I              4             26
  II             7             50
  III            8             36
  IV             1             20

Clustering(11) Variable = WBSCR17 MUTATION ANALYSIS
D11V1, survival
                   sevent
clus2                0  1
  WBSCR17 MUTATED    7  0
  WBSCR17 WILD-TYPE 61 11
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
                7                72 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
                0                11 
$`WBSCR17 MUTATED`
TCGA-AA-3562 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A010 
        1.02         1.02         0.99         1.02         1.02        20.98 
TCGA-AA-A01X 
       26.01 

$`WBSCR17 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        0.99         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01Z 
        1.02        35.01         1.02        33.04        35.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
             0.99              0.92 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
            26.01             51.95 
  WBSCR17 MUTATED WBSCR17 WILD-TYPE 
             1.02             12.51 
[1] "1.0 - 26.0 (1.0)"  "0.9 - 52.0 (12.5)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"WBSCR17 WILD-TYPE"   "WBSCR17 MUTATED" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" "WBSCR17 WILD-TYPE" 
[1] "hr="     "7.5e+07"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WBSCR17 MUTATED      9    8
  WBSCR17 WILD-TYPE   68   70
        clus
vv       WBSCR17 MUTATED WBSCR17 WILD-TYPE
  FEMALE               9                68
  MALE                 8                70
D11V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  WBSCR17 MUTATED     15    2
  WBSCR17 WILD-TYPE  113   22
                               clus
vv                              WBSCR17 MUTATED WBSCR17 WILD-TYPE
  COLON ADENOCARCINOMA                       15               113
  COLON MUCINOUS ADENOCARCINOMA               2                22
D11V5, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  T1               0                 4
  T2               2                31
  T3              13                90
  T4               2                12
D11V6, multiclass
    clus
vv   WBSCR17 MUTATED WBSCR17 WILD-TYPE
  N0              11                80
  N1               3                27
  N2               3                31
D11V7, multiclass
     clus
vv    WBSCR17 MUTATED WBSCR17 WILD-TYPE
  M0               15               115
  M1                1                20
  M1A               0                 1
D11V8, multiclass
     clus
vv    WBSCR17 MUTATED WBSCR17 WILD-TYPE
  I                 0                30
  II               10                47
  III               5                39
  IV                1                20

Clustering(12) Variable = ACVR1B MUTATION ANALYSIS
D12V1, survival
                  sevent
clus2               0  1
  ACVR1B MUTATED    7  2
  ACVR1B WILD-TYPE 61  9
  ACVR1B MUTATED ACVR1B WILD-TYPE 
               9               70 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
               2                9 
$`ACVR1B MUTATED`
TCGA-A6-3807 TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-A00J TCGA-AA-A010 TCGA-AA-A01R 
       10.92         0.99         0.99        18.02        20.98        35.01 
TCGA-AA-A029 TCGA-AA-A02J TCGA-AA-A03F 
       51.95         5.03        18.02 

$`ACVR1B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        30.02        34.03        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02O TCGA-AA-A02W 
       20.98        39.06        39.95         2.01         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        40.93        16.31         0.95 

  ACVR1B MUTATED ACVR1B WILD-TYPE 
            0.99             0.92 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
           51.95            40.96 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
           18.02            10.57 
[1] "1.0 - 52.0 (18.0)" "0.9 - 41.0 (10.6)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR1B WILD-TYPE"   "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "ACVR1B MUTATED" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE"   "ACVR1B MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" "ACVR1B WILD-TYPE" 
[1] "hr=" "1.3"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR1B MUTATED      7    6
  ACVR1B WILD-TYPE   70   72
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  FEMALE              7               70
  MALE                6               72
D12V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR1B MUTATED      8    5
  ACVR1B WILD-TYPE  120   19
                               clus
vv                              ACVR1B MUTATED ACVR1B WILD-TYPE
  COLON ADENOCARCINOMA                       8              120
  COLON MUCINOUS ADENOCARCINOMA              5               19
D12V5, multiclass
    clus
vv   ACVR1B MUTATED ACVR1B WILD-TYPE
  T1              1                3
  T2              0               33
  T3              9               94
  T4              3               11
D12V6, multiclass
    clus
vv   ACVR1B MUTATED ACVR1B WILD-TYPE
  N0              8               83
  N1              2               28
  N2              3               31
D12V7, multiclass
     clus
vv    ACVR1B MUTATED ACVR1B WILD-TYPE
  M0              12              118
  M1               1               20
  M1A              0                1
D12V8, multiclass
     clus
vv    ACVR1B MUTATED ACVR1B WILD-TYPE
  I                1               29
  II               6               51
  III              5               39
  IV               1               20

Clustering(13) Variable = LRP1B MUTATION ANALYSIS
D13V1, survival
                 sevent
clus2              0  1
  LRP1B MUTATED   15  3
  LRP1B WILD-TYPE 53  8
  LRP1B MUTATED LRP1B WILD-TYPE 
             18              61 
  LRP1B MUTATED LRP1B WILD-TYPE 
              3               8 
$`LRP1B MUTATED`
TCGA-A6-2672 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3685 TCGA-AA-3939 
       16.54         8.09         1.02         0.99         0.99         0.99 
TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A010 
        1.02         1.02        18.02        18.02         4.01        20.98 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A02H TCGA-AA-A02W TCGA-AA-A02Y TCGA-AY-4071 
        1.02        35.01         2.01        40.96        39.95         0.95 

$`LRP1B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 
       10.92         9.14         0.99         1.02         1.02         0.99 
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 
        1.02         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 
        0.92         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         0.99         1.02         0.99         0.99        13.94 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       19.00        30.02        34.03        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A03F TCGA-AA-A03J 
       51.95        39.95         5.03         0.92        18.02        40.93 
TCGA-AY-4070 
       16.31 

  LRP1B MUTATED LRP1B WILD-TYPE 
           0.95            0.92 
  LRP1B MUTATED LRP1B WILD-TYPE 
          40.96           51.95 
  LRP1B MUTATED LRP1B WILD-TYPE 
           3.01           13.02 
[1] "0.9 - 41.0 (3.0)"  "0.9 - 52.0 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" "LRP1B WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRP1B WILD-TYPE"   "LRP1B MUTATED"   "LRP1B MUTATED" "LRP1B WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"LRP1B WILD-TYPE" "LRP1B WILD-TYPE"   "LRP1B MUTATED" 
[1] "hr=" "1.2"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRP1B MUTATED     18   12
  LRP1B WILD-TYPE   59   66
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  FEMALE            18              59
  MALE              12              66
D13V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRP1B MUTATED     18   10
  LRP1B WILD-TYPE  110   14
                               clus
vv                              LRP1B MUTATED LRP1B WILD-TYPE
  COLON ADENOCARCINOMA                     18             110
  COLON MUCINOUS ADENOCARCINOMA            10              14
D13V5, multiclass
    clus
vv   LRP1B MUTATED LRP1B WILD-TYPE
  T1             1               3
  T2             5              28
  T3            20              83
  T4             4              10
D13V6, multiclass
    clus
vv   LRP1B MUTATED LRP1B WILD-TYPE
  N0            21              70
  N1             4              26
  N2             5              29
D13V7, multiclass
     clus
vv    LRP1B MUTATED LRP1B WILD-TYPE
  M0             25             105
  M1              3              18
  M1A             0               1
D13V8, multiclass
     clus
vv    LRP1B MUTATED LRP1B WILD-TYPE
  I               5              25
  II             15              42
  III             6              38
  IV              3              18

Clustering(14) Variable = SMAD2 MUTATION ANALYSIS
D14V1, survival
                 sevent
clus2              0  1
  SMAD2 MUTATED    4  2
  SMAD2 WILD-TYPE 64  9
  SMAD2 MUTATED SMAD2 WILD-TYPE 
              6              73 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
              2               9 
$`SMAD2 MUTATED`
TCGA-AA-3842 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A01V TCGA-AA-A024 TCGA-AA-A029 
        1.02         1.02         4.01        35.01        39.06        51.95 

$`SMAD2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       33.04        26.01        20.98        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  SMAD2 MUTATED SMAD2 WILD-TYPE 
           1.02            0.92 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
          51.95           40.96 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
          19.51           12.00 
[1] "1.0 - 52.0 (19.5)" "0.9 - 41.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SMAD2 WILD-TYPE"   "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE"   "SMAD2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "SMAD2 MUTATED" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" "SMAD2 WILD-TYPE" 
[1] "hr=" "1.5"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD2 MUTATED      3    7
  SMAD2 WILD-TYPE   74   71
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  FEMALE             3              74
  MALE               7              71
D14V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SMAD2 MUTATED      7    3
  SMAD2 WILD-TYPE  121   21
                               clus
vv                              SMAD2 MUTATED SMAD2 WILD-TYPE
  COLON ADENOCARCINOMA                      7             121
  COLON MUCINOUS ADENOCARCINOMA             3              21
D14V5, multiclass
    clus
vv   SMAD2 MUTATED SMAD2 WILD-TYPE
  T1             0               4
  T2             3              30
  T3             5              98
  T4             2              12
D14V6, multiclass
    clus
vv   SMAD2 MUTATED SMAD2 WILD-TYPE
  N0             7              84
  N1             2              28
  N2             1              33
D14V7, multiclass
     clus
vv    SMAD2 MUTATED SMAD2 WILD-TYPE
  M0              7             123
  M1              2              19
  M1A             0               1
D14V8, multiclass
     clus
vv    SMAD2 MUTATED SMAD2 WILD-TYPE
  I               1              29
  II              5              52
  III             1              43
  IV              2              19

Clustering(15) Variable = CNTN6 MUTATION ANALYSIS
D15V1, survival
                 sevent
clus2              0  1
  CNTN6 MUTATED    8  2
  CNTN6 WILD-TYPE 60  9
  CNTN6 MUTATED CNTN6 WILD-TYPE 
             10              69 
  CNTN6 MUTATED CNTN6 WILD-TYPE 
              2               9 
$`CNTN6 MUTATED`
TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-3947 TCGA-AA-A00N TCGA-AA-A00R TCGA-AA-A010 
        0.99         0.99         0.99         4.01         0.99        20.98 
TCGA-AA-A017 TCGA-AA-A01S TCGA-AA-A03J TCGA-AY-4070 
       15.02         1.02        40.93        16.31 

$`CNTN6 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        0.99         1.02         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A01D 
       27.02        27.02        17.00        14.99        21.99         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
       35.01        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4071 
       39.95        18.02         0.95 

  CNTN6 MUTATED CNTN6 WILD-TYPE 
           0.99            0.92 
  CNTN6 MUTATED CNTN6 WILD-TYPE 
          40.93           51.95 
  CNTN6 MUTATED CNTN6 WILD-TYPE 
          2.515          12.000 
[1] "1.0 - 40.9 (2.5)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" "CNTN6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
  "CNTN6 MUTATED"   "CNTN6 MUTATED" "CNTN6 WILD-TYPE" 
[1] "hr=" "1.7"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNTN6 MUTATED     11    4
  CNTN6 WILD-TYPE   66   74
        clus
vv       CNTN6 MUTATED CNTN6 WILD-TYPE
  FEMALE            11              66
  MALE               4              74
D15V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNTN6 MUTATED     12    3
  CNTN6 WILD-TYPE  116   21
                               clus
vv                              CNTN6 MUTATED CNTN6 WILD-TYPE
  COLON ADENOCARCINOMA                     12             116
  COLON MUCINOUS ADENOCARCINOMA             3              21
D15V5, multiclass
    clus
vv   CNTN6 MUTATED CNTN6 WILD-TYPE
  T1             1               3
  T2             3              30
  T3             8              95
  T4             3              11
D15V6, multiclass
    clus
vv   CNTN6 MUTATED CNTN6 WILD-TYPE
  N0            12              79
  N1             2              28
  N2             1              33
D15V7, multiclass
     clus
vv    CNTN6 MUTATED CNTN6 WILD-TYPE
  M0             15             115
  M1              0              21
  M1A             0               1
D15V8, multiclass
     clus
vv    CNTN6 MUTATED CNTN6 WILD-TYPE
  I               4              26
  II              8              49
  III             3              41
  IV              0              21

Clustering(16) Variable = PCDH9 MUTATION ANALYSIS
D16V1, survival
                 sevent
clus2              0  1
  PCDH9 MUTATED   10  2
  PCDH9 WILD-TYPE 58  9
  PCDH9 MUTATED PCDH9 WILD-TYPE 
             12              67 
  PCDH9 MUTATED PCDH9 WILD-TYPE 
              2               9 
$`PCDH9 MUTATED`
TCGA-AA-3555 TCGA-AA-3679 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3939 
        0.99         0.99         0.99         0.99         1.02         0.99 
TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A00U TCGA-AA-A010 TCGA-AA-A01K 
        1.02         1.02         4.01        17.00        20.98        13.02 

$`PCDH9 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3837 
        1.02         1.02         0.99         1.02         0.99         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 
        0.92         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         0.99         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00W TCGA-AA-A00Z 
       17.00        27.02        27.02         0.99        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01P 
       15.02         0.99        13.02        12.00        12.00        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  PCDH9 MUTATED PCDH9 WILD-TYPE 
           0.99            0.92 
  PCDH9 MUTATED PCDH9 WILD-TYPE 
          20.98           51.95 
  PCDH9 MUTATED PCDH9 WILD-TYPE 
           1.02           13.91 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (13.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PCDH9 MUTATED" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE"   "PCDH9 MUTATED" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" "PCDH9 WILD-TYPE" 
[1] "hr=" "2.6"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCDH9 MUTATED      6   10
  PCDH9 WILD-TYPE   71   68
        clus
vv       PCDH9 MUTATED PCDH9 WILD-TYPE
  FEMALE             6              71
  MALE              10              68
D16V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCDH9 MUTATED     13    3
  PCDH9 WILD-TYPE  115   21
                               clus
vv                              PCDH9 MUTATED PCDH9 WILD-TYPE
  COLON ADENOCARCINOMA                     13             115
  COLON MUCINOUS ADENOCARCINOMA             3              21
D16V5, multiclass
    clus
vv   PCDH9 MUTATED PCDH9 WILD-TYPE
  T1             0               4
  T2             2              31
  T3            12              91
  T4             2              12
D16V6, multiclass
    clus
vv   PCDH9 MUTATED PCDH9 WILD-TYPE
  N0            11              80
  N1             2              28
  N2             3              31
D16V7, multiclass
     clus
vv    PCDH9 MUTATED PCDH9 WILD-TYPE
  M0             14             116
  M1              1              20
  M1A             0               1
D16V8, multiclass
     clus
vv    PCDH9 MUTATED PCDH9 WILD-TYPE
  I               0              30
  II             10              47
  III             4              40
  IV              1              20

Clustering(17) Variable = SOX9 MUTATION ANALYSIS
D17V1, survival
                sevent
clus2             0  1
  SOX9 MUTATED    1  1
  SOX9 WILD-TYPE 67 10
  SOX9 MUTATED SOX9 WILD-TYPE 
             2             77 
  SOX9 MUTATED SOX9 WILD-TYPE 
             1             10 
$`SOX9 MUTATED`
TCGA-AA-3939 TCGA-AA-A03F 
        0.99        18.02 

$`SOX9 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        40.93        16.31         0.95 

  SOX9 MUTATED SOX9 WILD-TYPE 
          0.99           0.92 
  SOX9 MUTATED SOX9 WILD-TYPE 
         18.02          51.95 
  SOX9 MUTATED SOX9 WILD-TYPE 
         9.505         12.000 
[1] "1.0 - 18.0 (9.5)"  "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE"   "SOX9 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE"   "SOX9 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "SOX9 MUTATED" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE"   "SOX9 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
[1] "Remove cluster labels:" "SOX9 MUTATED"          
clus
  SOX9 MUTATED SOX9 WILD-TYPE 
             2             77 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3952 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977     TCGA-AA-3986 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024     TCGA-AA-A029 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03J     TCGA-AY-4070 
"SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" "SOX9 WILD-TYPE" 
    TCGA-AY-4071 
"SOX9 WILD-TYPE" 
D17V2, continuous
D17V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SOX9 MUTATED      5    4
  SOX9 WILD-TYPE   72   74
        clus
vv       SOX9 MUTATED SOX9 WILD-TYPE
  FEMALE            5             72
  MALE              4             74
D17V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SOX9 MUTATED      8    1
  SOX9 WILD-TYPE  120   23
                               clus
vv                              SOX9 MUTATED SOX9 WILD-TYPE
  COLON ADENOCARCINOMA                     8            120
  COLON MUCINOUS ADENOCARCINOMA            1             23
D17V5, multiclass
    clus
vv   SOX9 MUTATED SOX9 WILD-TYPE
  T1            0              4
  T2            0             33
  T3            9             94
  T4            0             14
D17V6, multiclass
    clus
vv   SOX9 MUTATED SOX9 WILD-TYPE
  N0            6             85
  N1            1             29
  N2            2             32
D17V7, multiclass
     clus
vv    SOX9 MUTATED SOX9 WILD-TYPE
  M0             8            122
  M1             1             20
  M1A            0              1
D17V8, multiclass
     clus
vv    SOX9 MUTATED SOX9 WILD-TYPE
  I              0             30
  II             6             51
  III            2             42
  IV             1             20

Clustering(18) Variable = TXNDC3 MUTATION ANALYSIS
D18V1, survival
                  sevent
clus2               0  1
  TXNDC3 MUTATED    5  0
  TXNDC3 WILD-TYPE 63 11
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
               5               74 
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
               0               11 
$`TXNDC3 MUTATED`
TCGA-AA-3811 TCGA-AA-A00D TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A01Z 
        0.99        19.00        21.99        20.98        20.98 

$`TXNDC3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        18.02        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       14.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        26.01        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
            0.99             0.92 
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
           21.99            51.95 
  TXNDC3 MUTATED TXNDC3 WILD-TYPE 
           20.98            10.03 
[1] "1.0 - 22.0 (21.0)" "0.9 - 52.0 (10.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE"   "TXNDC3 MUTATED" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" "TXNDC3 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TXNDC3 MUTATED      6    4
  TXNDC3 WILD-TYPE   71   74
        clus
vv       TXNDC3 MUTATED TXNDC3 WILD-TYPE
  FEMALE              6               71
  MALE                4               74
D18V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TXNDC3 MUTATED      8    2
  TXNDC3 WILD-TYPE  120   22
                               clus
vv                              TXNDC3 MUTATED TXNDC3 WILD-TYPE
  COLON ADENOCARCINOMA                       8              120
  COLON MUCINOUS ADENOCARCINOMA              2               22
D18V5, multiclass
    clus
vv   TXNDC3 MUTATED TXNDC3 WILD-TYPE
  T1              0                4
  T2              2               31
  T3              7               96
  T4              1               13
D18V6, multiclass
    clus
vv   TXNDC3 MUTATED TXNDC3 WILD-TYPE
  N0              7               84
  N1              1               29
  N2              2               32
D18V7, multiclass
     clus
vv    TXNDC3 MUTATED TXNDC3 WILD-TYPE
  M0              10              120
  M1               0               21
  M1A              0                1
D18V8, multiclass
     clus
vv    TXNDC3 MUTATED TXNDC3 WILD-TYPE
  I                2               28
  II               5               52
  III              3               41
  IV               0               21

Clustering(19) Variable = MAP2K4 MUTATION ANALYSIS
D19V1, survival
                  sevent
clus2               0  1
  MAP2K4 MUTATED    3  2
  MAP2K4 WILD-TYPE 65  9
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
               5               74 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
               2                9 
$`MAP2K4 MUTATED`
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A00N TCGA-AA-A010 
        1.02         1.02         0.99         4.01        20.98 

$`MAP2K4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         0.99         0.99         1.02        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
            0.99             0.92 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
           20.98            51.95 
  MAP2K4 MUTATED MAP2K4 WILD-TYPE 
            1.02            12.51 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (12.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
  "MAP2K4 MUTATED"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
  "MAP2K4 MUTATED"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
  "MAP2K4 MUTATED"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAP2K4 WILD-TYPE"   "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "MAP2K4 MUTATED" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" "MAP2K4 WILD-TYPE" 
[1] "hr=" "5.6"
D19V2, continuous
D19V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP2K4 MUTATED      5    4
  MAP2K4 WILD-TYPE   72   74
        clus
vv       MAP2K4 MUTATED MAP2K4 WILD-TYPE
  FEMALE              5               72
  MALE                4               74
D19V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAP2K4 MUTATED      6    2
  MAP2K4 WILD-TYPE  122   22
                               clus
vv                              MAP2K4 MUTATED MAP2K4 WILD-TYPE
  COLON ADENOCARCINOMA                       6              122
  COLON MUCINOUS ADENOCARCINOMA              2               22
D19V5, multiclass
    clus
vv   MAP2K4 MUTATED MAP2K4 WILD-TYPE
  T1              0                4
  T2              1               32
  T3              6               97
  T4              2               12
D19V6, multiclass
    clus
vv   MAP2K4 MUTATED MAP2K4 WILD-TYPE
  N0              7               84
  N1              1               29
  N2              1               33
D19V7, multiclass
     clus
vv    MAP2K4 MUTATED MAP2K4 WILD-TYPE
  M0               9              121
  M1               0               21
  M1A              0                1
D19V8, multiclass
     clus
vv    MAP2K4 MUTATED MAP2K4 WILD-TYPE
  I                1               29
  II               6               51
  III              2               42
  IV               0               21

Clustering(20) Variable = SDK1 MUTATION ANALYSIS
D20V1, survival
                sevent
clus2             0  1
  SDK1 MUTATED   15  1
  SDK1 WILD-TYPE 53 10
  SDK1 MUTATED SDK1 WILD-TYPE 
            16             63 
  SDK1 MUTATED SDK1 WILD-TYPE 
             1             10 
$`SDK1 MUTATED`
TCGA-A6-2672 TCGA-A6-2674 TCGA-AA-3518 TCGA-AA-3562 TCGA-AA-3811 TCGA-AA-3842 
       16.54        17.19         1.02         1.02         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A00N 
        0.99         0.99         1.02         0.99         1.02         4.01 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A02O TCGA-AA-A02W 
        1.02        35.01         0.92        40.96 

$`SDK1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        14.70        17.79        14.37        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3679 
        9.14         8.09         0.99         0.99         1.02         0.99 
TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 
        0.99         1.02         0.99         0.99         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02Y TCGA-AA-A03F 
       51.95        39.95         2.01         5.03        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  SDK1 MUTATED SDK1 WILD-TYPE 
          0.92           0.92 
  SDK1 MUTATED SDK1 WILD-TYPE 
         40.96          51.95 
  SDK1 MUTATED SDK1 WILD-TYPE 
          1.02          13.91 
[1] "0.9 - 41.0 (1.0)"  "0.9 - 52.0 (13.9)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED"   "SDK1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED"   "SDK1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SDK1 WILD-TYPE"   "SDK1 MUTATED"   "SDK1 MUTATED"   "SDK1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SDK1 WILD-TYPE"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "SDK1 MUTATED"   "SDK1 MUTATED" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"SDK1 WILD-TYPE" "SDK1 WILD-TYPE" "SDK1 WILD-TYPE" 
[1] "hr=" "1.7"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SDK1 MUTATED     14   11
  SDK1 WILD-TYPE   63   67
        clus
vv       SDK1 MUTATED SDK1 WILD-TYPE
  FEMALE           14             63
  MALE             11             67
D20V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SDK1 MUTATED     17    7
  SDK1 WILD-TYPE  111   17
                               clus
vv                              SDK1 MUTATED SDK1 WILD-TYPE
  COLON ADENOCARCINOMA                    17            111
  COLON MUCINOUS ADENOCARCINOMA            7             17
D20V5, multiclass
    clus
vv   SDK1 MUTATED SDK1 WILD-TYPE
  T1            1              3
  T2            4             29
  T3           18             85
  T4            2             12
D20V6, multiclass
    clus
vv   SDK1 MUTATED SDK1 WILD-TYPE
  N0           15             76
  N1            3             27
  N2            7             27
D20V7, multiclass
     clus
vv    SDK1 MUTATED SDK1 WILD-TYPE
  M0            21            109
  M1             3             18
  M1A            0              1
D20V8, multiclass
     clus
vv    SDK1 MUTATED SDK1 WILD-TYPE
  I              3             27
  II            11             46
  III            7             37
  IV             2             19

Clustering(21) Variable = OR6N1 MUTATION ANALYSIS
D21V1, survival
                 sevent
clus2              0  1
  OR6N1 MUTATED    5  1
  OR6N1 WILD-TYPE 63 10
  OR6N1 MUTATED OR6N1 WILD-TYPE 
              6              73 
  OR6N1 MUTATED OR6N1 WILD-TYPE 
              1              10 
$`OR6N1 MUTATED`
TCGA-AA-3710 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A01P TCGA-AA-A01V 
        1.02         0.99         1.02        30.02        38.07        35.01 

$`OR6N1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X 
       13.02         1.02        35.01         1.02        33.04        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  OR6N1 MUTATED OR6N1 WILD-TYPE 
           0.99            0.92 
  OR6N1 MUTATED OR6N1 WILD-TYPE 
          38.07           51.95 
  OR6N1 MUTATED OR6N1 WILD-TYPE 
          15.52           12.00 
[1] "1.0 - 38.1 (15.5)" "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6N1 WILD-TYPE"   "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6N1 WILD-TYPE"   "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6N1 WILD-TYPE"   "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE"   "OR6N1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "OR6N1 MUTATED" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" "OR6N1 WILD-TYPE" 
[1] "hr=" "1.1"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6N1 MUTATED      4    4
  OR6N1 WILD-TYPE   73   74
        clus
vv       OR6N1 MUTATED OR6N1 WILD-TYPE
  FEMALE             4              73
  MALE               4              74
D21V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6N1 MUTATED      7    1
  OR6N1 WILD-TYPE  121   23
                               clus
vv                              OR6N1 MUTATED OR6N1 WILD-TYPE
  COLON ADENOCARCINOMA                      7             121
  COLON MUCINOUS ADENOCARCINOMA             1              23
D21V5, multiclass
    clus
vv   OR6N1 MUTATED OR6N1 WILD-TYPE
  T1             0               4
  T2             2              31
  T3             6              97
  T4             0              14
D21V6, multiclass
    clus
vv   OR6N1 MUTATED OR6N1 WILD-TYPE
  N0             5              86
  N1             2              28
  N2             1              33
D21V7, multiclass
     clus
vv    OR6N1 MUTATED OR6N1 WILD-TYPE
  M0              6             124
  M1              1              20
  M1A             0               1
D21V8, multiclass
     clus
vv    OR6N1 MUTATED OR6N1 WILD-TYPE
  I               1              29
  II              3              54
  III             2              42
  IV              1              20

Clustering(22) Variable = GRIA1 MUTATION ANALYSIS
D22V1, survival
                 sevent
clus2              0  1
  GRIA1 MUTATED   11  1
  GRIA1 WILD-TYPE 57 10
  GRIA1 MUTATED GRIA1 WILD-TYPE 
             12              67 
  GRIA1 MUTATED GRIA1 WILD-TYPE 
              1              10 
$`GRIA1 MUTATED`
TCGA-A6-2676 TCGA-AA-3518 TCGA-AA-3844 TCGA-AA-3941 TCGA-AA-3977 TCGA-AA-A00E 
       14.70         1.02         0.92         1.02         1.02        30.02 
TCGA-AA-A00R TCGA-AA-A010 TCGA-AA-A01K TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02Y 
        0.99        20.98        13.02        39.95         2.01        39.95 

$`GRIA1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
       10.92         9.14         8.09         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F 
        0.99         0.99        13.94        18.02        19.00        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        12.00        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        40.96        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  GRIA1 MUTATED GRIA1 WILD-TYPE 
           0.92            0.92 
  GRIA1 MUTATED GRIA1 WILD-TYPE 
          39.95           51.95 
  GRIA1 MUTATED GRIA1 WILD-TYPE 
          7.515          12.000 
[1] "0.9 - 40.0 (7.5)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "GRIA1 MUTATED" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIA1 WILD-TYPE"   "GRIA1 MUTATED"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE"   "GRIA1 MUTATED" "GRIA1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" "GRIA1 WILD-TYPE" 
[1] "hr=" "2.2"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIA1 MUTATED     10    4
  GRIA1 WILD-TYPE   67   74
        clus
vv       GRIA1 MUTATED GRIA1 WILD-TYPE
  FEMALE            10              67
  MALE               4              74
D22V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIA1 MUTATED     12    2
  GRIA1 WILD-TYPE  116   22
                               clus
vv                              GRIA1 MUTATED GRIA1 WILD-TYPE
  COLON ADENOCARCINOMA                     12             116
  COLON MUCINOUS ADENOCARCINOMA             2              22
D22V5, multiclass
    clus
vv   GRIA1 MUTATED GRIA1 WILD-TYPE
  T1             0               4
  T2             4              29
  T3             7              96
  T4             2              12
D22V6, multiclass
    clus
vv   GRIA1 MUTATED GRIA1 WILD-TYPE
  N0             9              82
  N1             2              28
  N2             3              31
D22V7, multiclass
     clus
vv    GRIA1 MUTATED GRIA1 WILD-TYPE
  M0             10             120
  M1              2              19
  M1A             1               0
D22V8, multiclass
     clus
vv    GRIA1 MUTATED GRIA1 WILD-TYPE
  I               3              27
  II              5              52
  III             2              42
  IV              3              18

Clustering(23) Variable = DMD MUTATION ANALYSIS
D23V1, survival
               sevent
clus2            0  1
  DMD MUTATED   15  3
  DMD WILD-TYPE 53  8
  DMD MUTATED DMD WILD-TYPE 
           18            61 
  DMD MUTATED DMD WILD-TYPE 
            3             8 
$`DMD MUTATED`
TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-3807 TCGA-AA-3518 TCGA-AA-3837 TCGA-AA-3846 
       16.54        14.70        10.92         1.02         1.02         0.99 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00J 
        0.99         0.99         1.02         1.02        30.02        18.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01T TCGA-AA-A024 
        4.01        20.98        38.07         1.02        33.04        39.06 

$`DMD WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3808 
       13.91        17.19        17.79        14.37        15.52         9.14 
TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 
        8.09         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3842 
        0.99         1.02         0.99         0.99         0.99         1.02 
TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.92         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       34.03        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01V 
       12.00        12.00        13.02        35.01         1.02        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       26.01        20.98        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  DMD MUTATED DMD WILD-TYPE 
         0.99          0.92 
  DMD MUTATED DMD WILD-TYPE 
        39.06         51.95 
  DMD MUTATED DMD WILD-TYPE 
        7.465        12.000 
[1] "1.0 - 39.1 (7.5)"  "0.9 - 52.0 (12.0)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "DMD MUTATED"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "DMD MUTATED"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "DMD MUTATED"   "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "DMD MUTATED" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"DMD WILD-TYPE" "DMD WILD-TYPE"   "DMD MUTATED" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" "DMD WILD-TYPE" 
[1] "hr=" "1.2"
D23V2, continuous
D23V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  DMD MUTATED     17   10
  DMD WILD-TYPE   60   68
        clus
vv       DMD MUTATED DMD WILD-TYPE
  FEMALE          17            60
  MALE            10            68
D23V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  DMD MUTATED     18    9
  DMD WILD-TYPE  110   15
                               clus
vv                              DMD MUTATED DMD WILD-TYPE
  COLON ADENOCARCINOMA                   18           110
  COLON MUCINOUS ADENOCARCINOMA           9            15
D23V5, multiclass
    clus
vv   DMD MUTATED DMD WILD-TYPE
  T1           0             4
  T2           2            31
  T3          20            83
  T4           4            10
D23V6, multiclass
    clus
vv   DMD MUTATED DMD WILD-TYPE
  N0          15            76
  N1           7            23
  N2           5            29
D23V7, multiclass
     clus
vv    DMD MUTATED DMD WILD-TYPE
  M0           26           104
  M1            0            21
  M1A           0             1
D23V8, multiclass
     clus
vv    DMD MUTATED DMD WILD-TYPE
  I             0            30
  II           14            43
  III          12            32
  IV            0            21

Clustering(24) Variable = NRXN1 MUTATION ANALYSIS
D24V1, survival
                 sevent
clus2              0  1
  NRXN1 MUTATED    8  1
  NRXN1 WILD-TYPE 60 10
  NRXN1 MUTATED NRXN1 WILD-TYPE 
              9              70 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
              1              10 
$`NRXN1 MUTATED`
TCGA-AA-3526 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99         0.99         1.02         4.01        20.98 
TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A02F 
       35.01        20.98        39.95 

$`NRXN1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A024 
        1.02        35.01         1.02        33.04        26.01        39.06 
TCGA-AA-A029 TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       51.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  NRXN1 MUTATED NRXN1 WILD-TYPE 
           0.99            0.92 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
          39.95           51.95 
  NRXN1 MUTATED NRXN1 WILD-TYPE 
           4.01           12.00 
[1] "1.0 - 40.0 (4.0)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "NRXN1 MUTATED" "NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN1 WILD-TYPE"   "NRXN1 MUTATED" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" "NRXN1 WILD-TYPE" 
[1] "hr=" "1.4"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN1 MUTATED      7   10
  NRXN1 WILD-TYPE   70   68
        clus
vv       NRXN1 MUTATED NRXN1 WILD-TYPE
  FEMALE             7              70
  MALE              10              68
D24V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN1 MUTATED     14    2
  NRXN1 WILD-TYPE  114   22
                               clus
vv                              NRXN1 MUTATED NRXN1 WILD-TYPE
  COLON ADENOCARCINOMA                     14             114
  COLON MUCINOUS ADENOCARCINOMA             2              22
D24V5, multiclass
    clus
vv   NRXN1 MUTATED NRXN1 WILD-TYPE
  T1             1               3
  T2             6              27
  T3             7              96
  T4             3              11
D24V6, multiclass
    clus
vv   NRXN1 MUTATED NRXN1 WILD-TYPE
  N0            15              76
  N1             1              29
  N2             1              33
D24V7, multiclass
     clus
vv    NRXN1 MUTATED NRXN1 WILD-TYPE
  M0             15             115
  M1              1              20
  M1A             0               1
D24V8, multiclass
     clus
vv    NRXN1 MUTATED NRXN1 WILD-TYPE
  I               5              25
  II              9              48
  III             1              43
  IV              1              20

Clustering(25) Variable = OTOL1 MUTATION ANALYSIS
D25V1, survival
                 sevent
clus2              0  1
  OTOL1 MUTATED    3  0
  OTOL1 WILD-TYPE 65 11
  OTOL1 MUTATED OTOL1 WILD-TYPE 
              3              76 
  OTOL1 MUTATED OTOL1 WILD-TYPE 
              0              11 
$`OTOL1 MUTATED`
TCGA-AA-A010 TCGA-AA-A01S TCGA-AA-A03J 
       20.98         1.02        40.93 

$`OTOL1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
       35.01        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        16.31         0.95 

  OTOL1 MUTATED OTOL1 WILD-TYPE 
           1.02            0.92 
  OTOL1 MUTATED OTOL1 WILD-TYPE 
          40.93           51.95 
  OTOL1 MUTATED OTOL1 WILD-TYPE 
          20.98           11.46 
[1] "1.0 - 40.9 (21.0)" "0.9 - 52.0 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE"   "OTOL1 MUTATED" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE"   "OTOL1 MUTATED" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE"   "OTOL1 MUTATED" "OTOL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
  "OTOL1 MUTATED" "OTOL1 WILD-TYPE" "OTOL1 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OTOL1 MUTATED      4    3
  OTOL1 WILD-TYPE   73   75
        clus
vv       OTOL1 MUTATED OTOL1 WILD-TYPE
  FEMALE             4              73
  MALE               3              75
D25V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OTOL1 MUTATED      6    1
  OTOL1 WILD-TYPE  122   23
                               clus
vv                              OTOL1 MUTATED OTOL1 WILD-TYPE
  COLON ADENOCARCINOMA                      6             122
  COLON MUCINOUS ADENOCARCINOMA             1              23
D25V5, multiclass
    clus
vv   OTOL1 MUTATED OTOL1 WILD-TYPE
  T1             0               4
  T2             3              30
  T3             2             101
  T4             2              12
D25V6, multiclass
    clus
vv   OTOL1 MUTATED OTOL1 WILD-TYPE
  N0             3              88
  N1             3              27
  N2             1              33
D25V7, multiclass
     clus
vv    OTOL1 MUTATED OTOL1 WILD-TYPE
  M0              7             123
  M1              0              21
  M1A             0               1
D25V8, multiclass
     clus
vv    OTOL1 MUTATED OTOL1 WILD-TYPE
  I               1              29
  II              2              55
  III             4              40
  IV              0              21

Clustering(26) Variable = OR2M4 MUTATION ANALYSIS
D26V1, survival
                 sevent
clus2              0  1
  OR2M4 MUTATED    5  0
  OR2M4 WILD-TYPE 63 11
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              5              74 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
              0              11 
$`OR2M4 MUTATED`
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3986 TCGA-AA-A010 TCGA-AA-A02O 
        0.99         0.99         0.99        20.98         0.92 

$`OR2M4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         1.02        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  OR2M4 MUTATED OR2M4 WILD-TYPE 
           0.92            0.92 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
          20.98           51.95 
  OR2M4 MUTATED OR2M4 WILD-TYPE 
           0.99           12.51 
[1] "0.9 - 21.0 (1.0)"  "0.9 - 52.0 (12.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED"   "OR2M4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED"   "OR2M4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE"   "OR2M4 MUTATED"   "OR2M4 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "OR2M4 MUTATED" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" "OR2M4 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M4 MUTATED      5    3
  OR2M4 WILD-TYPE   72   75
        clus
vv       OR2M4 MUTATED OR2M4 WILD-TYPE
  FEMALE             5              72
  MALE               3              75
D26V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M4 MUTATED      8    0
  OR2M4 WILD-TYPE  120   24
                               clus
vv                              OR2M4 MUTATED OR2M4 WILD-TYPE
  COLON ADENOCARCINOMA                      8             120
  COLON MUCINOUS ADENOCARCINOMA             0              24
D26V5, multiclass
    clus
vv   OR2M4 MUTATED OR2M4 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             6              97
  T4             1              13
D26V6, multiclass
    clus
vv   OR2M4 MUTATED OR2M4 WILD-TYPE
  N0             5              86
  N1             1              29
  N2             2              32
D26V7, multiclass
     clus
vv    OR2M4 MUTATED OR2M4 WILD-TYPE
  M0              7             123
  M1              1              20
  M1A             0               1
D26V8, multiclass
     clus
vv    OR2M4 MUTATED OR2M4 WILD-TYPE
  I               1              29
  II              4              53
  III             2              42
  IV              1              20

Clustering(27) Variable = MGC42105 MUTATION ANALYSIS
D27V1, survival
                    sevent
clus2                 0  1
  MGC42105 MUTATED    6  0
  MGC42105 WILD-TYPE 62 11
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                 6                 73 
  MGC42105 MUTATED MGC42105 WILD-TYPE 
                 0                 11 
$`MGC42105 MUTATED`
TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3842 TCGA-AA-3848 TCGA-AA-3877 TCGA-AA-3977 
        0.99         1.02         1.02         0.99         0.99         1.02 

$`MGC42105 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3939 
        0.99         1.02         0.92         0.99         1.02         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  MGC42105 MUTATED MGC42105 WILD-TYPE 
              0.99               0.92 
  MGC42105 MUTATED MGC42105 WILD-TYPE 
              1.02              51.95 
  MGC42105 MUTATED MGC42105 WILD-TYPE 
             1.005             13.020 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 52.0 (13.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AY-4071 
"MGC42105 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AY-4071 
"MGC42105 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC42105 WILD-TYPE"   "MGC42105 MUTATED" "MGC42105 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "MGC42105 MUTATED" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE"   "MGC42105 MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" "MGC42105 WILD-TYPE" 
        TCGA-AY-4071 
"MGC42105 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC42105 MUTATED      6    4
  MGC42105 WILD-TYPE   71   74
        clus
vv       MGC42105 MUTATED MGC42105 WILD-TYPE
  FEMALE                6                 71
  MALE                  4                 74
D27V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC42105 MUTATED      8    2
  MGC42105 WILD-TYPE  120   22
                               clus
vv                              MGC42105 MUTATED MGC42105 WILD-TYPE
  COLON ADENOCARCINOMA                         8                120
  COLON MUCINOUS ADENOCARCINOMA                2                 22
D27V5, multiclass
    clus
vv   MGC42105 MUTATED MGC42105 WILD-TYPE
  T1                1                  3
  T2                3                 30
  T3                6                 97
  T4                0                 14
D27V6, multiclass
    clus
vv   MGC42105 MUTATED MGC42105 WILD-TYPE
  N0                8                 83
  N1                1                 29
  N2                1                 33
D27V7, multiclass
     clus
vv    MGC42105 MUTATED MGC42105 WILD-TYPE
  M0                 8                122
  M1                 0                 21
  M1A                0                  1
D27V8, multiclass
     clus
vv    MGC42105 MUTATED MGC42105 WILD-TYPE
  I                  1                 29
  II                 5                 52
  III                2                 42
  IV                 0                 21

Clustering(28) Variable = AFF2 MUTATION ANALYSIS
D28V1, survival
                sevent
clus2             0  1
  AFF2 MUTATED    7  1
  AFF2 WILD-TYPE 61 10
  AFF2 MUTATED AFF2 WILD-TYPE 
             8             71 
  AFF2 MUTATED AFF2 WILD-TYPE 
             1             10 
$`AFF2 MUTATED`
TCGA-A6-2676 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3846 TCGA-AA-3949 TCGA-AA-A00N 
       14.70         9.14         8.09         0.99         0.99         4.01 
TCGA-AA-A010 TCGA-AA-A02Y 
       20.98        39.95 

$`AFF2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 
       10.92         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         1.02         0.92         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        18.02        40.93        16.31         0.95 

  AFF2 MUTATED AFF2 WILD-TYPE 
          0.99           0.92 
  AFF2 MUTATED AFF2 WILD-TYPE 
         39.95          51.95 
  AFF2 MUTATED AFF2 WILD-TYPE 
         8.615         12.000 
[1] "1.0 - 40.0 (8.6)"  "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "AFF2 MUTATED"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "AFF2 MUTATED"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "AFF2 MUTATED"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "AFF2 MUTATED" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE"   "AFF2 MUTATED" "AFF2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"AFF2 WILD-TYPE" "AFF2 WILD-TYPE" "AFF2 WILD-TYPE" 
[1] "hr=" "1.3"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  AFF2 MUTATED      6    9
  AFF2 WILD-TYPE   71   69
        clus
vv       AFF2 MUTATED AFF2 WILD-TYPE
  FEMALE            6             71
  MALE              9             69
D28V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  AFF2 MUTATED     10    5
  AFF2 WILD-TYPE  118   19
                               clus
vv                              AFF2 MUTATED AFF2 WILD-TYPE
  COLON ADENOCARCINOMA                    10            118
  COLON MUCINOUS ADENOCARCINOMA            5             19
D28V5, multiclass
    clus
vv   AFF2 MUTATED AFF2 WILD-TYPE
  T1            0              4
  T2            1             32
  T3           11             92
  T4            2             12
D28V6, multiclass
    clus
vv   AFF2 MUTATED AFF2 WILD-TYPE
  N0           10             81
  N1            3             27
  N2            2             32
D28V7, multiclass
     clus
vv    AFF2 MUTATED AFF2 WILD-TYPE
  M0            15            115
  M1             0             21
  M1A            0              1
D28V8, multiclass
     clus
vv    AFF2 MUTATED AFF2 WILD-TYPE
  I              1             29
  II             9             48
  III            5             39
  IV             0             21

Clustering(29) Variable = KCNA4 MUTATION ANALYSIS
D29V1, survival
                 sevent
clus2              0  1
  KCNA4 MUTATED    5  1
  KCNA4 WILD-TYPE 63 10
  KCNA4 MUTATED KCNA4 WILD-TYPE 
              6              73 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
              1              10 
$`KCNA4 MUTATED`
TCGA-AA-3715 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A01R TCGA-AA-A02W 
        0.99         0.99         1.02         4.01        35.01        40.96 

$`KCNA4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  KCNA4 MUTATED KCNA4 WILD-TYPE 
           0.99            0.92 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
          40.96           51.95 
  KCNA4 MUTATED KCNA4 WILD-TYPE 
          2.515          12.000 
[1] "1.0 - 41.0 (2.5)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE"   "KCNA4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KCNA4 WILD-TYPE"   "KCNA4 MUTATED" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" "KCNA4 WILD-TYPE" 
[1] "hr=" "1.1"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNA4 MUTATED      6    4
  KCNA4 WILD-TYPE   71   74
        clus
vv       KCNA4 MUTATED KCNA4 WILD-TYPE
  FEMALE             6              71
  MALE               4              74
D29V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNA4 MUTATED      6    4
  KCNA4 WILD-TYPE  122   20
                               clus
vv                              KCNA4 MUTATED KCNA4 WILD-TYPE
  COLON ADENOCARCINOMA                      6             122
  COLON MUCINOUS ADENOCARCINOMA             4              20
D29V5, multiclass
    clus
vv   KCNA4 MUTATED KCNA4 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             8              95
  T4             1              13
D29V6, multiclass
    clus
vv   KCNA4 MUTATED KCNA4 WILD-TYPE
  N0             7              84
  N1             2              28
  N2             1              33
D29V7, multiclass
     clus
vv    KCNA4 MUTATED KCNA4 WILD-TYPE
  M0             10             120
  M1              0              21
  M1A             0               1
D29V8, multiclass
     clus
vv    KCNA4 MUTATED KCNA4 WILD-TYPE
  I               1              29
  II              6              51
  III             3              41
  IV              0              21

Clustering(30) Variable = MGC26647 MUTATION ANALYSIS
D30V1, survival
                    sevent
clus2                 0  1
  MGC26647 MUTATED    3  1
  MGC26647 WILD-TYPE 65 10
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 4                 75 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 1                 10 
$`MGC26647 MUTATED`
TCGA-AA-3811 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A02W 
        0.99         4.01        20.98        40.96 

$`MGC26647 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         2.01         5.03         0.92        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  MGC26647 MUTATED MGC26647 WILD-TYPE 
              0.99               0.92 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
             40.96              51.95 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
            12.495             12.000 
[1] "1.0 - 41.0 (12.5)" "0.9 - 52.0 (12.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AY-4071 
"MGC26647 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AY-4071 
"MGC26647 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-AY-4071 
"MGC26647 WILD-TYPE" 
[1] "hr=" "1.2"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC26647 MUTATED      5    2
  MGC26647 WILD-TYPE   72   76
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  FEMALE                5                 72
  MALE                  2                 76
D30V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC26647 MUTATED      5    2
  MGC26647 WILD-TYPE  123   22
                               clus
vv                              MGC26647 MUTATED MGC26647 WILD-TYPE
  COLON ADENOCARCINOMA                         5                123
  COLON MUCINOUS ADENOCARCINOMA                2                 22
D30V5, multiclass
    clus
vv   MGC26647 MUTATED MGC26647 WILD-TYPE
  T1                0                  4
  T2                2                 31
  T3                3                100
  T4                2                 12
D30V6, multiclass
    clus
vv   MGC26647 MUTATED MGC26647 WILD-TYPE
  N0                6                 85
  N1                0                 30
  N2                1                 33
D30V7, multiclass
     clus
vv    MGC26647 MUTATED MGC26647 WILD-TYPE
  M0                 7                123
  M1                 0                 21
  M1A                0                  1
D30V8, multiclass
     clus
vv    MGC26647 MUTATED MGC26647 WILD-TYPE
  I                  2                 28
  II                 4                 53
  III                1                 43
  IV                 0                 21

Clustering(31) Variable = TNFRSF10C MUTATION ANALYSIS
D31V1, survival
                     sevent
clus2                  0  1
  TNFRSF10C MUTATED    1  0
  TNFRSF10C WILD-TYPE 67 11
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  1                  78 
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  0                  11 
$`TNFRSF10C MUTATED`
TCGA-AA-3844 
        0.92 

$`TNFRSF10C WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
               0.92                0.92 
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
               0.92               51.95 
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
               0.92               12.00 
[1] "0.9 - 0.9 (0.9)"   "0.9 - 52.0 (12.0)"
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE"   "TNFRSF10C MUTATED" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AY-4071 
"TNFRSF10C WILD-TYPE" 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE"   "TNFRSF10C MUTATED" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AY-4071 
"TNFRSF10C WILD-TYPE" 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3844 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE"   "TNFRSF10C MUTATED" 
         TCGA-AA-3846          TCGA-AA-3848          TCGA-AA-3854 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3877          TCGA-AA-3939          TCGA-AA-3941 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3947          TCGA-AA-3949          TCGA-AA-3952 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3966          TCGA-AA-3975          TCGA-AA-3977 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3986          TCGA-AA-A004          TCGA-AA-A00A 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00D          TCGA-AA-A00E          TCGA-AA-A00F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00J          TCGA-AA-A00K          TCGA-AA-A00L 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00N          TCGA-AA-A00O          TCGA-AA-A00Q 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00R          TCGA-AA-A00U          TCGA-AA-A00W 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00Z          TCGA-AA-A010          TCGA-AA-A017 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01D          TCGA-AA-A01F          TCGA-AA-A01G 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01I          TCGA-AA-A01K          TCGA-AA-A01P 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Q          TCGA-AA-A01R          TCGA-AA-A01S 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01T          TCGA-AA-A01V          TCGA-AA-A01X 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01Z          TCGA-AA-A024          TCGA-AA-A029 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02F          TCGA-AA-A02H          TCGA-AA-A02J 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02O          TCGA-AA-A02W          TCGA-AA-A02Y 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A03F          TCGA-AA-A03J          TCGA-AY-4070 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AY-4071 
"TNFRSF10C WILD-TYPE" 
[1] "Remove cluster labels:" "TNFRSF10C MUTATED"     
clus
  TNFRSF10C MUTATED TNFRSF10C WILD-TYPE 
                  1                  78 
         TCGA-A6-2670          TCGA-A6-2672          TCGA-A6-2674 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2676          TCGA-A6-2677          TCGA-A6-2678 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-2683          TCGA-A6-3807          TCGA-A6-3808 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-A6-3810          TCGA-AA-3518          TCGA-AA-3526 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3555          TCGA-AA-3562          TCGA-AA-3666 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3679          TCGA-AA-3685          TCGA-AA-3710 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3715          TCGA-AA-3811          TCGA-AA-3818 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3837          TCGA-AA-3842          TCGA-AA-3846 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3848          TCGA-AA-3854          TCGA-AA-3877 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3939          TCGA-AA-3941          TCGA-AA-3947 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3949          TCGA-AA-3952          TCGA-AA-3966 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-3975          TCGA-AA-3977          TCGA-AA-3986 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A004          TCGA-AA-A00A          TCGA-AA-A00D 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00E          TCGA-AA-A00F          TCGA-AA-A00J 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00K          TCGA-AA-A00L          TCGA-AA-A00N 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00O          TCGA-AA-A00Q          TCGA-AA-A00R 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A00U          TCGA-AA-A00W          TCGA-AA-A00Z 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A010          TCGA-AA-A017          TCGA-AA-A01D 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01F          TCGA-AA-A01G          TCGA-AA-A01I 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01K          TCGA-AA-A01P          TCGA-AA-A01Q 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01R          TCGA-AA-A01S          TCGA-AA-A01T 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A01V          TCGA-AA-A01X          TCGA-AA-A01Z 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A024          TCGA-AA-A029          TCGA-AA-A02F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02H          TCGA-AA-A02J          TCGA-AA-A02O 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A02W          TCGA-AA-A02Y          TCGA-AA-A03F 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
         TCGA-AA-A03J          TCGA-AY-4070          TCGA-AY-4071 
"TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" "TNFRSF10C WILD-TYPE" 
D31V2, continuous
D31V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  TNFRSF10C MUTATED      2    4
  TNFRSF10C WILD-TYPE   75   74
        clus
vv       TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  FEMALE                 2                  75
  MALE                   4                  74
D31V4, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  TNFRSF10C MUTATED      6    0
  TNFRSF10C WILD-TYPE  122   24
                               clus
vv                              TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  COLON ADENOCARCINOMA                          6                 122
  COLON MUCINOUS ADENOCARCINOMA                 0                  24
D31V5, multiclass
    clus
vv   TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  T1                 0                   4
  T2                 2                  31
  T3                 2                 101
  T4                 2                  12
D31V6, multiclass
    clus
vv   TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  N0                 2                  89
  N1                 1                  29
  N2                 3                  31
D31V7, multiclass
     clus
vv    TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  M0                  3                 127
  M1                  3                  18
  M1A                 0                   1
D31V8, multiclass
     clus
vv    TNFRSF10C MUTATED TNFRSF10C WILD-TYPE
  I                   2                  28
  II                  0                  57
  III                 1                  43
  IV                  3                  18

Clustering(32) Variable = TPTE MUTATION ANALYSIS
D32V1, survival
                sevent
clus2             0  1
  TPTE MUTATED    6  1
  TPTE WILD-TYPE 62 10
  TPTE MUTATED TPTE WILD-TYPE 
             7             72 
  TPTE MUTATED TPTE WILD-TYPE 
             1             10 
$`TPTE MUTATED`
TCGA-AA-3811 TCGA-AA-3844 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.92         0.99         1.02         4.01        20.98 
TCGA-AA-A01R 
       35.01 

$`TPTE WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  TPTE MUTATED TPTE WILD-TYPE 
          0.92           0.92 
  TPTE MUTATED TPTE WILD-TYPE 
         35.01          51.95 
  TPTE MUTATED TPTE WILD-TYPE 
          1.02          12.51 
[1] "0.9 - 35.0 (1.0)"  "0.9 - 52.0 (12.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
[1] "hr=" "1.7"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED      7    4
  TPTE WILD-TYPE   70   74
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  FEMALE            7             70
  MALE              4             74
D32V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED      7    4
  TPTE WILD-TYPE  121   20
                               clus
vv                              TPTE MUTATED TPTE WILD-TYPE
  COLON ADENOCARCINOMA                     7            121
  COLON MUCINOUS ADENOCARCINOMA            4             20
D32V5, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  T1            0              4
  T2            2             31
  T3            7             96
  T4            2             12
D32V6, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  N0            6             85
  N1            1             29
  N2            4             30
D32V7, multiclass
     clus
vv    TPTE MUTATED TPTE WILD-TYPE
  M0             9            121
  M1             1             20
  M1A            0              1
D32V8, multiclass
     clus
vv    TPTE MUTATED TPTE WILD-TYPE
  I              1             29
  II             4             53
  III            4             40
  IV             1             20

Clustering(33) Variable = CDH11 MUTATION ANALYSIS
D33V1, survival
                 sevent
clus2              0  1
  CDH11 MUTATED    8  2
  CDH11 WILD-TYPE 60  9
  CDH11 MUTATED CDH11 WILD-TYPE 
             10              69 
  CDH11 MUTATED CDH11 WILD-TYPE 
              2               9 
$`CDH11 MUTATED`
TCGA-AA-3679 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N 
        0.99         0.99         0.99         0.99         1.02         4.01 
TCGA-AA-A00U TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A02Y 
       17.00        38.07         1.02        39.95 

$`CDH11 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3818 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
        0.99        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01R TCGA-AA-A01S 
       13.02        12.00        12.00        13.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F 
       39.95         2.01         5.03         0.92        40.96        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  CDH11 MUTATED CDH11 WILD-TYPE 
           0.99            0.92 
  CDH11 MUTATED CDH11 WILD-TYPE 
          39.95           51.95 
  CDH11 MUTATED CDH11 WILD-TYPE 
           1.02           13.02 
[1] "1.0 - 40.0 (1.0)"  "0.9 - 52.0 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED"   "CDH11 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED"   "CDH11 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED"   "CDH11 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "CDH11 MUTATED" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE"   "CDH11 MUTATED" "CDH11 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CDH11 WILD-TYPE" "CDH11 WILD-TYPE" "CDH11 WILD-TYPE" 
[1] "hr=" "1.6"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH11 MUTATED      5    8
  CDH11 WILD-TYPE   72   70
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  FEMALE             5              72
  MALE               8              70
D33V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH11 MUTATED     11    2
  CDH11 WILD-TYPE  117   22
                               clus
vv                              CDH11 MUTATED CDH11 WILD-TYPE
  COLON ADENOCARCINOMA                     11             117
  COLON MUCINOUS ADENOCARCINOMA             2              22
D33V5, multiclass
    clus
vv   CDH11 MUTATED CDH11 WILD-TYPE
  T1             0               4
  T2             3              30
  T3             9              94
  T4             1              13
D33V6, multiclass
    clus
vv   CDH11 MUTATED CDH11 WILD-TYPE
  N0             6              85
  N1             4              26
  N2             3              31
D33V7, multiclass
     clus
vv    CDH11 MUTATED CDH11 WILD-TYPE
  M0             10             120
  M1              2              19
  M1A             0               1
D33V8, multiclass
     clus
vv    CDH11 MUTATED CDH11 WILD-TYPE
  I               1              29
  II              4              53
  III             5              39
  IV              2              19

Clustering(34) Variable = GABRA5 MUTATION ANALYSIS
D34V1, survival
                  sevent
clus2               0  1
  GABRA5 MUTATED    3  2
  GABRA5 WILD-TYPE 65  9
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               5               74 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
               2                9 
$`GABRA5 MUTATED`
TCGA-AA-3679 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01P 
        0.99         4.01        20.98        15.02        38.07 

$`GABRA5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       14.99        21.99         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  GABRA5 MUTATED GABRA5 WILD-TYPE 
            0.99             0.92 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
           38.07            51.95 
  GABRA5 MUTATED GABRA5 WILD-TYPE 
           15.02            11.46 
[1] "1.0 - 38.1 (15.0)" "0.9 - 52.0 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRA5 MUTATED"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRA5 MUTATED"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"GABRA5 WILD-TYPE"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GABRA5 MUTATED"   "GABRA5 MUTATED" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE"   "GABRA5 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" "GABRA5 WILD-TYPE" 
[1] "hr=" "2.9"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA5 MUTATED      5    3
  GABRA5 WILD-TYPE   72   75
        clus
vv       GABRA5 MUTATED GABRA5 WILD-TYPE
  FEMALE              5               72
  MALE                3               75
D34V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA5 MUTATED      7    1
  GABRA5 WILD-TYPE  121   23
                               clus
vv                              GABRA5 MUTATED GABRA5 WILD-TYPE
  COLON ADENOCARCINOMA                       7              121
  COLON MUCINOUS ADENOCARCINOMA              1               23
D34V5, multiclass
    clus
vv   GABRA5 MUTATED GABRA5 WILD-TYPE
  T1              0                4
  T2              1               32
  T3              5               98
  T4              2               12
D34V6, multiclass
    clus
vv   GABRA5 MUTATED GABRA5 WILD-TYPE
  N0              5               86
  N1              2               28
  N2              1               33
D34V7, multiclass
     clus
vv    GABRA5 MUTATED GABRA5 WILD-TYPE
  M0               7              123
  M1               1               20
  M1A              0                1
D34V8, multiclass
     clus
vv    GABRA5 MUTATED GABRA5 WILD-TYPE
  I                1               29
  II               4               53
  III              2               42
  IV               1               20

Clustering(35) Variable = PCDHB2 MUTATION ANALYSIS
D35V1, survival
                  sevent
clus2               0  1
  PCDHB2 MUTATED    9  0
  PCDHB2 WILD-TYPE 59 11
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
               9               70 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
               0               11 
$`PCDHB2 MUTATED`
TCGA-A6-2672 TCGA-A6-2674 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3846 TCGA-AA-3977 
       16.54        17.19         0.99         0.99         0.99         1.02 
TCGA-AA-A00E TCGA-AA-A010 TCGA-AA-A01Q 
       30.02        20.98         1.02 

$`PCDHB2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        14.70        17.79        14.37        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        1.02         0.92         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J 
        0.99        13.94        18.02        19.00        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S 
       12.00        12.00        13.02        38.07        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
            0.99             0.92 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
           30.02            51.95 
  PCDHB2 MUTATED PCDHB2 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 30.0 (1.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED"   "PCDHB2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE"   "PCDHB2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "PCDHB2 MUTATED" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" "PCDHB2 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB2 MUTATED      8    5
  PCDHB2 WILD-TYPE   69   73
        clus
vv       PCDHB2 MUTATED PCDHB2 WILD-TYPE
  FEMALE              8               69
  MALE                5               73
D35V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB2 MUTATED     11    2
  PCDHB2 WILD-TYPE  117   22
                               clus
vv                              PCDHB2 MUTATED PCDHB2 WILD-TYPE
  COLON ADENOCARCINOMA                      11              117
  COLON MUCINOUS ADENOCARCINOMA              2               22
D35V5, multiclass
    clus
vv   PCDHB2 MUTATED PCDHB2 WILD-TYPE
  T1              0                4
  T2              2               31
  T3              9               94
  T4              2               12
D35V6, multiclass
    clus
vv   PCDHB2 MUTATED PCDHB2 WILD-TYPE
  N0              7               84
  N1              4               26
  N2              2               32
D35V7, multiclass
     clus
vv    PCDHB2 MUTATED PCDHB2 WILD-TYPE
  M0              10              120
  M1               2               19
  M1A              0                1
D35V8, multiclass
     clus
vv    PCDHB2 MUTATED PCDHB2 WILD-TYPE
  I                1               29
  II               5               52
  III              4               40
  IV               1               20

Clustering(36) Variable = KLHL4 MUTATION ANALYSIS
D36V1, survival
                 sevent
clus2              0  1
  KLHL4 MUTATED    7  3
  KLHL4 WILD-TYPE 61  8
  KLHL4 MUTATED KLHL4 WILD-TYPE 
             10              69 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
              3               8 
$`KLHL4 MUTATED`
TCGA-AA-3710 TCGA-AA-3947 TCGA-AA-A00E TCGA-AA-A00K TCGA-AA-A00N TCGA-AA-A010 
        1.02         0.99        30.02        18.02         4.01        20.98 
TCGA-AA-A01D TCGA-AA-A01P TCGA-AA-A01R TCGA-AY-4070 
        0.99        38.07        35.01        16.31 

$`KLHL4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00L TCGA-AA-A00O 
       18.02        19.00        34.03        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01S 
       13.02        12.00        12.00        13.02         1.02         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4071 
       18.02        40.93         0.95 

  KLHL4 MUTATED KLHL4 WILD-TYPE 
           0.99            0.92 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
          38.07           51.95 
  KLHL4 MUTATED KLHL4 WILD-TYPE 
         17.165          10.920 
[1] "1.0 - 38.1 (17.2)" "0.9 - 52.0 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "KLHL4 MUTATED" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE"   "KLHL4 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" "KLHL4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"KLHL4 WILD-TYPE"   "KLHL4 MUTATED" "KLHL4 WILD-TYPE" 
[1] "hr=" "2.4"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLHL4 MUTATED      8    4
  KLHL4 WILD-TYPE   69   74
        clus
vv       KLHL4 MUTATED KLHL4 WILD-TYPE
  FEMALE             8              69
  MALE               4              74
D36V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KLHL4 MUTATED      8    4
  KLHL4 WILD-TYPE  120   20
                               clus
vv                              KLHL4 MUTATED KLHL4 WILD-TYPE
  COLON ADENOCARCINOMA                      8             120
  COLON MUCINOUS ADENOCARCINOMA             4              20
D36V5, multiclass
    clus
vv   KLHL4 MUTATED KLHL4 WILD-TYPE
  T1             0               4
  T2             0              33
  T3             9              94
  T4             3              11
D36V6, multiclass
    clus
vv   KLHL4 MUTATED KLHL4 WILD-TYPE
  N0             7              84
  N1             2              28
  N2             3              31
D36V7, multiclass
     clus
vv    KLHL4 MUTATED KLHL4 WILD-TYPE
  M0             12             118
  M1              0              21
  M1A             0               1
D36V8, multiclass
     clus
vv    KLHL4 MUTATED KLHL4 WILD-TYPE
  I               0              30
  II              7              50
  III             5              39
  IV              0              21

Clustering(37) Variable = OR51V1 MUTATION ANALYSIS
D37V1, survival
                  sevent
clus2               0  1
  OR51V1 MUTATED    7  0
  OR51V1 WILD-TYPE 61 11
  OR51V1 MUTATED OR51V1 WILD-TYPE 
               7               72 
  OR51V1 MUTATED OR51V1 WILD-TYPE 
               0               11 
$`OR51V1 MUTATED`
TCGA-A6-2676 TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-A010 
       14.70         0.99         1.02         0.99         0.99        20.98 
TCGA-AA-A01R 
       35.01 

$`OR51V1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  OR51V1 MUTATED OR51V1 WILD-TYPE 
            0.99             0.92 
  OR51V1 MUTATED OR51V1 WILD-TYPE 
           35.01            51.95 
  OR51V1 MUTATED OR51V1 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 35.0 (1.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR51V1 WILD-TYPE"   "OR51V1 MUTATED" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" "OR51V1 WILD-TYPE" 
[1] "hr="     "7.5e+07"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51V1 MUTATED      6    3
  OR51V1 WILD-TYPE   71   75
        clus
vv       OR51V1 MUTATED OR51V1 WILD-TYPE
  FEMALE              6               71
  MALE                3               75
D37V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51V1 MUTATED      4    5
  OR51V1 WILD-TYPE  124   19
                               clus
vv                              OR51V1 MUTATED OR51V1 WILD-TYPE
  COLON ADENOCARCINOMA                       4              124
  COLON MUCINOUS ADENOCARCINOMA              5               19
D37V5, multiclass
    clus
vv   OR51V1 MUTATED OR51V1 WILD-TYPE
  T1              0                4
  T2              0               33
  T3              5               98
  T4              3               11
D37V6, multiclass
    clus
vv   OR51V1 MUTATED OR51V1 WILD-TYPE
  N0              8               83
  N1              0               30
  N2              1               33
D37V7, multiclass
     clus
vv    OR51V1 MUTATED OR51V1 WILD-TYPE
  M0               9              121
  M1               0               21
  M1A              0                1
D37V8, multiclass
     clus
vv    OR51V1 MUTATED OR51V1 WILD-TYPE
  I                0               30
  II               8               49
  III              1               43
  IV               0               21

Clustering(38) Variable = ISL1 MUTATION ANALYSIS
D38V1, survival
                sevent
clus2             0  1
  ISL1 MUTATED    5  0
  ISL1 WILD-TYPE 63 11
  ISL1 MUTATED ISL1 WILD-TYPE 
             5             74 
  ISL1 MUTATED ISL1 WILD-TYPE 
             0             11 
$`ISL1 MUTATED`
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3842 TCGA-AA-3939 TCGA-AA-A010 
        0.99         0.99         1.02         0.99        20.98 

$`ISL1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        0.99         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  ISL1 MUTATED ISL1 WILD-TYPE 
          0.99           0.92 
  ISL1 MUTATED ISL1 WILD-TYPE 
         20.98          51.95 
  ISL1 MUTATED ISL1 WILD-TYPE 
          0.99          12.51 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (12.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED"   "ISL1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED" "ISL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED"   "ISL1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED" "ISL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED"   "ISL1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE"   "ISL1 MUTATED" "ISL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ISL1 MUTATED" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"ISL1 WILD-TYPE" "ISL1 WILD-TYPE" "ISL1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ISL1 MUTATED      3    5
  ISL1 WILD-TYPE   74   73
        clus
vv       ISL1 MUTATED ISL1 WILD-TYPE
  FEMALE            3             74
  MALE              5             73
D38V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ISL1 MUTATED      8    0
  ISL1 WILD-TYPE  120   24
                               clus
vv                              ISL1 MUTATED ISL1 WILD-TYPE
  COLON ADENOCARCINOMA                     8            120
  COLON MUCINOUS ADENOCARCINOMA            0             24
D38V5, multiclass
    clus
vv   ISL1 MUTATED ISL1 WILD-TYPE
  T1            0              4
  T2            1             32
  T3            6             97
  T4            1             13
D38V6, multiclass
    clus
vv   ISL1 MUTATED ISL1 WILD-TYPE
  N0            3             88
  N1            4             26
  N2            1             33
D38V7, multiclass
     clus
vv    ISL1 MUTATED ISL1 WILD-TYPE
  M0             7            123
  M1             1             20
  M1A            0              1
D38V8, multiclass
     clus
vv    ISL1 MUTATED ISL1 WILD-TYPE
  I              0             30
  II             3             54
  III            4             40
  IV             1             20

Clustering(39) Variable = GRIK3 MUTATION ANALYSIS
D39V1, survival
                 sevent
clus2              0  1
  GRIK3 MUTATED    5  1
  GRIK3 WILD-TYPE 63 10
  GRIK3 MUTATED GRIK3 WILD-TYPE 
              6              73 
  GRIK3 MUTATED GRIK3 WILD-TYPE 
              1              10 
$`GRIK3 MUTATED`
TCGA-AA-3710 TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A00N TCGA-AA-A01I TCGA-AA-A02O 
        1.02         1.02        18.02         4.01        12.00         0.92 

$`GRIK3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K 
       20.98        15.02         0.99        13.02        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  GRIK3 MUTATED GRIK3 WILD-TYPE 
           0.92            0.92 
  GRIK3 MUTATED GRIK3 WILD-TYPE 
          18.02           51.95 
  GRIK3 MUTATED GRIK3 WILD-TYPE 
          2.515          13.020 
[1] "0.9 - 18.0 (2.5)"  "0.9 - 52.0 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"GRIK3 WILD-TYPE"   "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "GRIK3 MUTATED" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" "GRIK3 WILD-TYPE" 
[1] "hr=" "1.9"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIK3 MUTATED      5    9
  GRIK3 WILD-TYPE   72   69
        clus
vv       GRIK3 MUTATED GRIK3 WILD-TYPE
  FEMALE             5              72
  MALE               9              69
D39V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GRIK3 MUTATED     11    3
  GRIK3 WILD-TYPE  117   21
                               clus
vv                              GRIK3 MUTATED GRIK3 WILD-TYPE
  COLON ADENOCARCINOMA                     11             117
  COLON MUCINOUS ADENOCARCINOMA             3              21
D39V5, multiclass
    clus
vv   GRIK3 MUTATED GRIK3 WILD-TYPE
  T1             0               4
  T2             4              29
  T3             9              94
  T4             1              13
D39V6, multiclass
    clus
vv   GRIK3 MUTATED GRIK3 WILD-TYPE
  N0            11              80
  N1             2              28
  N2             1              33
D39V7, multiclass
     clus
vv    GRIK3 MUTATED GRIK3 WILD-TYPE
  M0             11             119
  M1              2              19
  M1A             0               1
D39V8, multiclass
     clus
vv    GRIK3 MUTATED GRIK3 WILD-TYPE
  I               3              27
  II              7              50
  III             1              43
  IV              2              19

Clustering(40) Variable = PRDM9 MUTATION ANALYSIS
D40V1, survival
                 sevent
clus2              0  1
  PRDM9 MUTATED    5  0
  PRDM9 WILD-TYPE 63 11
  PRDM9 MUTATED PRDM9 WILD-TYPE 
              5              74 
  PRDM9 MUTATED PRDM9 WILD-TYPE 
              0              11 
$`PRDM9 MUTATED`
TCGA-A6-3810 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-A010 TCGA-AA-A01R 
        8.09         1.02         0.99        20.98        35.01 

$`PRDM9 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3949 TCGA-AA-3952 
        0.99         1.02         0.99         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  PRDM9 MUTATED PRDM9 WILD-TYPE 
           0.99            0.92 
  PRDM9 MUTATED PRDM9 WILD-TYPE 
          35.01           51.95 
  PRDM9 MUTATED PRDM9 WILD-TYPE 
           8.09           12.00 
[1] "1.0 - 35.0 (8.1)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRDM9 WILD-TYPE"   "PRDM9 MUTATED" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" "PRDM9 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRDM9 MUTATED      7    4
  PRDM9 WILD-TYPE   70   74
        clus
vv       PRDM9 MUTATED PRDM9 WILD-TYPE
  FEMALE             7              70
  MALE               4              74
D40V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRDM9 MUTATED      8    2
  PRDM9 WILD-TYPE  120   22
                               clus
vv                              PRDM9 MUTATED PRDM9 WILD-TYPE
  COLON ADENOCARCINOMA                      8             120
  COLON MUCINOUS ADENOCARCINOMA             2              22
D40V5, multiclass
    clus
vv   PRDM9 MUTATED PRDM9 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             7              96
  T4             3              11
D40V6, multiclass
    clus
vv   PRDM9 MUTATED PRDM9 WILD-TYPE
  N0             8              83
  N1             2              28
  N2             1              33
D40V7, multiclass
     clus
vv    PRDM9 MUTATED PRDM9 WILD-TYPE
  M0             10             120
  M1              0              21
  M1A             1               0
D40V8, multiclass
     clus
vv    PRDM9 MUTATED PRDM9 WILD-TYPE
  I               1              29
  II              7              50
  III             2              42
  IV              1              20

Clustering(41) Variable = TCF7L2 MUTATION ANALYSIS
D41V1, survival
                  sevent
clus2               0  1
  TCF7L2 MUTATED    5  0
  TCF7L2 WILD-TYPE 63 11
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
               5               74 
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
               0               11 
$`TCF7L2 MUTATED`
TCGA-AA-3977 TCGA-AA-A00K TCGA-AA-A010 TCGA-AA-A01I TCGA-AA-A01T 
        1.02        18.02        20.98        12.00        33.04 

$`TCF7L2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01V 
       13.02        38.07         1.02        35.01         1.02        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
            1.02             0.92 
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
           33.04            51.95 
  TCF7L2 MUTATED TCF7L2 WILD-TYPE 
           18.02            10.03 
[1] "1.0 - 33.0 (18.0)" "0.9 - 52.0 (10.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE"   "TCF7L2 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" "TCF7L2 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCF7L2 MUTATED      7    4
  TCF7L2 WILD-TYPE   70   74
        clus
vv       TCF7L2 MUTATED TCF7L2 WILD-TYPE
  FEMALE              7               70
  MALE                4               74
D41V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TCF7L2 MUTATED     11    0
  TCF7L2 WILD-TYPE  117   24
                               clus
vv                              TCF7L2 MUTATED TCF7L2 WILD-TYPE
  COLON ADENOCARCINOMA                      11              117
  COLON MUCINOUS ADENOCARCINOMA              0               24
D41V5, multiclass
    clus
vv   TCF7L2 MUTATED TCF7L2 WILD-TYPE
  T1              0                4
  T2              3               30
  T3              6               97
  T4              2               12
D41V6, multiclass
    clus
vv   TCF7L2 MUTATED TCF7L2 WILD-TYPE
  N0              7               84
  N1              2               28
  N2              2               32
D41V7, multiclass
     clus
vv    TCF7L2 MUTATED TCF7L2 WILD-TYPE
  M0               9              121
  M1               1               20
  M1A              0                1
D41V8, multiclass
     clus
vv    TCF7L2 MUTATED TCF7L2 WILD-TYPE
  I                1               29
  II               5               52
  III              3               41
  IV               1               20

Clustering(42) Variable = C8B MUTATION ANALYSIS
D42V1, survival
               sevent
clus2            0  1
  C8B MUTATED    7  2
  C8B WILD-TYPE 61  9
  C8B MUTATED C8B WILD-TYPE 
            9            70 
  C8B MUTATED C8B WILD-TYPE 
            2             9 
$`C8B MUTATED`
TCGA-A6-2677 TCGA-A6-2683 TCGA-AA-3666 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-A01D 
       17.79        15.52         1.02         0.99         1.02         0.99 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A02J 
       33.04        35.01         5.03 

$`C8B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-3807 
       13.91        16.54        17.19        14.70        14.37        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 
       27.02         0.99        17.00        14.99        21.99        20.98 
TCGA-AA-A017 TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
       15.02        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        35.01         1.02        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       51.95        39.95         2.01         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  C8B MUTATED C8B WILD-TYPE 
         0.99          0.92 
  C8B MUTATED C8B WILD-TYPE 
        35.01         51.95 
  C8B MUTATED C8B WILD-TYPE 
         5.03         12.00 
[1] "1.0 - 35.0 (5.0)"  "0.9 - 52.0 (12.0)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED"   "C8B MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED"   "C8B MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE"   "C8B MUTATED"   "C8B MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"C8B WILD-TYPE"   "C8B MUTATED" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" "C8B WILD-TYPE" 
[1] "hr=" "2.3"
D42V2, continuous
D42V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  C8B MUTATED      7    2
  C8B WILD-TYPE   70   76
        clus
vv       C8B MUTATED C8B WILD-TYPE
  FEMALE           7            70
  MALE             2            76
D42V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  C8B MUTATED      6    3
  C8B WILD-TYPE  122   21
                               clus
vv                              C8B MUTATED C8B WILD-TYPE
  COLON ADENOCARCINOMA                    6           122
  COLON MUCINOUS ADENOCARCINOMA           3            21
D42V5, multiclass
    clus
vv   C8B MUTATED C8B WILD-TYPE
  T1           0             4
  T2           1            32
  T3           6            97
  T4           2            12
D42V6, multiclass
    clus
vv   C8B MUTATED C8B WILD-TYPE
  N0           5            86
  N1           2            28
  N2           2            32
D42V7, multiclass
     clus
vv    C8B MUTATED C8B WILD-TYPE
  M0            7           123
  M1            2            19
  M1A           0             1
D42V8, multiclass
     clus
vv    C8B MUTATED C8B WILD-TYPE
  I             1            29
  II            2            55
  III           4            40
  IV            2            19

Clustering(43) Variable = PSG8 MUTATION ANALYSIS
D43V1, survival
                sevent
clus2             0  1
  PSG8 MUTATED    2  1
  PSG8 WILD-TYPE 66 10
  PSG8 MUTATED PSG8 WILD-TYPE 
             3             76 
  PSG8 MUTATED PSG8 WILD-TYPE 
             1             10 
$`PSG8 MUTATED`
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A01X 
        1.02         4.01        26.01 

$`PSG8 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
        1.02        33.04        35.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  PSG8 MUTATED PSG8 WILD-TYPE 
          1.02           0.92 
  PSG8 MUTATED PSG8 WILD-TYPE 
         26.01          51.95 
  PSG8 MUTATED PSG8 WILD-TYPE 
          4.01          12.00 
[1] "1.0 - 26.0 (4.0)"  "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE"   "PSG8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE"   "PSG8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE"   "PSG8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PSG8 WILD-TYPE"   "PSG8 MUTATED" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"PSG8 WILD-TYPE" "PSG8 WILD-TYPE" "PSG8 WILD-TYPE" 
[1] "hr=" "2.9"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG8 MUTATED      4    4
  PSG8 WILD-TYPE   73   74
        clus
vv       PSG8 MUTATED PSG8 WILD-TYPE
  FEMALE            4             73
  MALE              4             74
D43V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG8 MUTATED      6    2
  PSG8 WILD-TYPE  122   22
                               clus
vv                              PSG8 MUTATED PSG8 WILD-TYPE
  COLON ADENOCARCINOMA                     6            122
  COLON MUCINOUS ADENOCARCINOMA            2             22
D43V5, multiclass
    clus
vv   PSG8 MUTATED PSG8 WILD-TYPE
  T1            0              4
  T2            2             31
  T3            4             99
  T4            2             12
D43V6, multiclass
    clus
vv   PSG8 MUTATED PSG8 WILD-TYPE
  N0            5             86
  N1            2             28
  N2            1             33
D43V7, multiclass
     clus
vv    PSG8 MUTATED PSG8 WILD-TYPE
  M0             6            124
  M1             1             20
  M1A            0              1
D43V8, multiclass
     clus
vv    PSG8 MUTATED PSG8 WILD-TYPE
  I              0             30
  II             4             53
  III            2             42
  IV             1             20

Clustering(44) Variable = DNAH5 MUTATION ANALYSIS
D44V1, survival
                 sevent
clus2              0  1
  DNAH5 MUTATED   13  2
  DNAH5 WILD-TYPE 55  9
  DNAH5 MUTATED DNAH5 WILD-TYPE 
             15              64 
  DNAH5 MUTATED DNAH5 WILD-TYPE 
              2               9 
$`DNAH5 MUTATED`
TCGA-A6-2672 TCGA-A6-3810 TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3818 TCGA-AA-3842 
       16.54         8.09         0.99         1.02         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00N 
        0.99         0.99         1.02        18.02        19.00         4.01 
TCGA-AA-A010 TCGA-AA-A029 TCGA-AA-A03J 
       20.98        51.95        40.93 

$`DNAH5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 
       10.92         9.14         1.02         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3844 
        0.99         0.99         0.99         0.99         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00E 
        1.02         1.02         0.99         0.99        13.94        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       39.06        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        16.31         0.95 

  DNAH5 MUTATED DNAH5 WILD-TYPE 
           0.99            0.92 
  DNAH5 MUTATED DNAH5 WILD-TYPE 
          51.95           40.96 
  DNAH5 MUTATED DNAH5 WILD-TYPE 
           4.01           12.51 
[1] "1.0 - 52.0 (4.0)"  "0.9 - 41.0 (12.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE"   "DNAH5 MUTATED"   "DNAH5 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DNAH5 WILD-TYPE"   "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
  "DNAH5 MUTATED" "DNAH5 WILD-TYPE" "DNAH5 WILD-TYPE" 
[1] "hr=" "1.2"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DNAH5 MUTATED     16   12
  DNAH5 WILD-TYPE   61   66
        clus
vv       DNAH5 MUTATED DNAH5 WILD-TYPE
  FEMALE            16              61
  MALE              12              66
D44V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DNAH5 MUTATED     22    5
  DNAH5 WILD-TYPE  106   19
                               clus
vv                              DNAH5 MUTATED DNAH5 WILD-TYPE
  COLON ADENOCARCINOMA                     22             106
  COLON MUCINOUS ADENOCARCINOMA             5              19
D44V5, multiclass
    clus
vv   DNAH5 MUTATED DNAH5 WILD-TYPE
  T1             1               3
  T2             6              27
  T3            17              86
  T4             4              10
D44V6, multiclass
    clus
vv   DNAH5 MUTATED DNAH5 WILD-TYPE
  N0            20              71
  N1             4              26
  N2             4              30
D44V7, multiclass
     clus
vv    DNAH5 MUTATED DNAH5 WILD-TYPE
  M0             24             106
  M1              3              18
  M1A             0               1
D44V8, multiclass
     clus
vv    DNAH5 MUTATED DNAH5 WILD-TYPE
  I               4              26
  II             15              42
  III             5              39
  IV              3              18

Clustering(45) Variable = FAM22F MUTATION ANALYSIS
D45V1, survival
                  sevent
clus2               0  1
  FAM22F MUTATED    2  1
  FAM22F WILD-TYPE 66 10
  FAM22F MUTATED FAM22F WILD-TYPE 
               3               76 
  FAM22F MUTATED FAM22F WILD-TYPE 
               1               10 
$`FAM22F MUTATED`
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A00N 
        0.99         1.02         4.01 

$`FAM22F WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A004 
        0.99         0.99         1.02         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  FAM22F MUTATED FAM22F WILD-TYPE 
            0.99             0.92 
  FAM22F MUTATED FAM22F WILD-TYPE 
            4.01            51.95 
  FAM22F MUTATED FAM22F WILD-TYPE 
            1.02            12.51 
[1] "1.0 - 4.0 (1.0)"   "0.9 - 52.0 (12.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE"   "FAM22F MUTATED"   "FAM22F MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM22F WILD-TYPE"   "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE"   "FAM22F MUTATED"   "FAM22F MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM22F WILD-TYPE"   "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE"   "FAM22F MUTATED"   "FAM22F MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"FAM22F WILD-TYPE"   "FAM22F MUTATED" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"FAM22F WILD-TYPE" "FAM22F WILD-TYPE" "FAM22F WILD-TYPE" 
[1] "hr=" "6.1"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM22F MUTATED      0    8
  FAM22F WILD-TYPE   77   70
        clus
vv       FAM22F MUTATED FAM22F WILD-TYPE
  FEMALE              0               77
  MALE                8               70
D45V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM22F MUTATED      7    1
  FAM22F WILD-TYPE  121   23
                               clus
vv                              FAM22F MUTATED FAM22F WILD-TYPE
  COLON ADENOCARCINOMA                       7              121
  COLON MUCINOUS ADENOCARCINOMA              1               23
D45V5, multiclass
    clus
vv   FAM22F MUTATED FAM22F WILD-TYPE
  T1              0                4
  T2              3               30
  T3              2              101
  T4              3               11
D45V6, multiclass
    clus
vv   FAM22F MUTATED FAM22F WILD-TYPE
  N0              4               87
  N1              2               28
  N2              2               32
D45V7, multiclass
     clus
vv    FAM22F MUTATED FAM22F WILD-TYPE
  M0               4              126
  M1               3               18
  M1A              0                1
D45V8, multiclass
     clus
vv    FAM22F MUTATED FAM22F WILD-TYPE
  I                2               28
  II               1               56
  III              1               43
  IV               3               18

Clustering(46) Variable = ATM MUTATION ANALYSIS
D46V1, survival
               sevent
clus2            0  1
  ATM MUTATED   10  1
  ATM WILD-TYPE 58 10
  ATM MUTATED ATM WILD-TYPE 
           11            68 
  ATM MUTATED ATM WILD-TYPE 
            1            10 
$`ATM MUTATED`
TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3966 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01R TCGA-AA-A02Y 
        1.02         4.01        20.98        35.01        39.95 

$`ATM WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 
        1.02         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        0.92         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03         0.92        40.96        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  ATM MUTATED ATM WILD-TYPE 
         0.99          0.92 
  ATM MUTATED ATM WILD-TYPE 
        39.95         51.95 
  ATM MUTATED ATM WILD-TYPE 
         1.02         13.02 
[1] "1.0 - 40.0 (1.0)"  "0.9 - 52.0 (13.0)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
  "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ATM WILD-TYPE"   "ATM MUTATED" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE"   "ATM MUTATED" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" "ATM WILD-TYPE" 
[1] "hr=" "1.4"
D46V2, continuous
D46V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  ATM MUTATED     14    7
  ATM WILD-TYPE   63   71
        clus
vv       ATM MUTATED ATM WILD-TYPE
  FEMALE          14            63
  MALE             7            71
D46V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  ATM MUTATED     16    5
  ATM WILD-TYPE  112   19
                               clus
vv                              ATM MUTATED ATM WILD-TYPE
  COLON ADENOCARCINOMA                   16           112
  COLON MUCINOUS ADENOCARCINOMA           5            19
D46V5, multiclass
    clus
vv   ATM MUTATED ATM WILD-TYPE
  T1           0             4
  T2           4            29
  T3          14            89
  T4           3            11
D46V6, multiclass
    clus
vv   ATM MUTATED ATM WILD-TYPE
  N0          15            76
  N1           2            28
  N2           4            30
D46V7, multiclass
     clus
vv    ATM MUTATED ATM WILD-TYPE
  M0           19           111
  M1            1            20
  M1A           0             1
D46V8, multiclass
     clus
vv    ATM MUTATED ATM WILD-TYPE
  I             2            28
  II           12            45
  III           5            39
  IV            1            20

Clustering(47) Variable = CCDC160 MUTATION ANALYSIS
D47V1, survival
                   sevent
clus2                0  1
  CCDC160 MUTATED    1  0
  CCDC160 WILD-TYPE 67 11
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                1                78 
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                0                11 
$`CCDC160 MUTATED`
TCGA-AA-A010 
       20.98 

$`CCDC160 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  CCDC160 MUTATED CCDC160 WILD-TYPE 
            20.98              0.92 
  CCDC160 MUTATED CCDC160 WILD-TYPE 
            20.98             51.95 
  CCDC160 MUTATED CCDC160 WILD-TYPE 
            20.98             11.46 
[1] "21.0 - 21.0 (21.0)" "0.9 - 52.0 (11.5)" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CCDC160 MUTATED" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
[1] "Remove cluster labels:" "CCDC160 MUTATED"       
clus
  CCDC160 MUTATED CCDC160 WILD-TYPE 
                1                78 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P        TCGA-AA-A01Q 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T        TCGA-AA-A01V 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024        TCGA-AA-A029 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02O 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F        TCGA-AA-A03J 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"CCDC160 WILD-TYPE" "CCDC160 WILD-TYPE" 
D47V2, continuous
D47V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC160 MUTATED      4    1
  CCDC160 WILD-TYPE   73   77
        clus
vv       CCDC160 MUTATED CCDC160 WILD-TYPE
  FEMALE               4                73
  MALE                 1                77
D47V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC160 MUTATED      5    0
  CCDC160 WILD-TYPE  123   24
                               clus
vv                              CCDC160 MUTATED CCDC160 WILD-TYPE
  COLON ADENOCARCINOMA                        5               123
  COLON MUCINOUS ADENOCARCINOMA               0                24
D47V5, multiclass
    clus
vv   CCDC160 MUTATED CCDC160 WILD-TYPE
  T1               0                 4
  T2               0                33
  T3               3               100
  T4               2                12
D47V6, multiclass
    clus
vv   CCDC160 MUTATED CCDC160 WILD-TYPE
  N0               3                88
  N1               2                28
  N2               0                34
D47V7, multiclass
     clus
vv    CCDC160 MUTATED CCDC160 WILD-TYPE
  M0                4               126
  M1                1                20
  M1A               0                 1
D47V8, multiclass
     clus
vv    CCDC160 MUTATED CCDC160 WILD-TYPE
  I                 0                30
  II                3                54
  III               1                43
  IV                1                20

Clustering(48) Variable = EPHA3 MUTATION ANALYSIS
D48V1, survival
                 sevent
clus2              0  1
  EPHA3 MUTATED    5  0
  EPHA3 WILD-TYPE 63 11
  EPHA3 MUTATED EPHA3 WILD-TYPE 
              5              74 
  EPHA3 MUTATED EPHA3 WILD-TYPE 
              0              11 
$`EPHA3 MUTATED`
TCGA-AA-3811 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-A00E TCGA-AA-A010 
        0.99         0.99         1.02        30.02        20.98 

$`EPHA3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  EPHA3 MUTATED EPHA3 WILD-TYPE 
           0.99            0.92 
  EPHA3 MUTATED EPHA3 WILD-TYPE 
          30.02           51.95 
  EPHA3 MUTATED EPHA3 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 30.0 (1.0)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE"   "EPHA3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"EPHA3 WILD-TYPE"   "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "EPHA3 MUTATED" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" "EPHA3 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA3 MUTATED      8    5
  EPHA3 WILD-TYPE   69   73
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  FEMALE             8              69
  MALE               5              73
D48V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EPHA3 MUTATED      9    3
  EPHA3 WILD-TYPE  119   21
                               clus
vv                              EPHA3 MUTATED EPHA3 WILD-TYPE
  COLON ADENOCARCINOMA                      9             119
  COLON MUCINOUS ADENOCARCINOMA             3              21
D48V5, multiclass
    clus
vv   EPHA3 MUTATED EPHA3 WILD-TYPE
  T1             0               4
  T2             1              32
  T3            10              93
  T4             2              12
D48V6, multiclass
    clus
vv   EPHA3 MUTATED EPHA3 WILD-TYPE
  N0             8              83
  N1             2              28
  N2             3              31
D48V7, multiclass
     clus
vv    EPHA3 MUTATED EPHA3 WILD-TYPE
  M0             11             119
  M1              2              19
  M1A             0               1
D48V8, multiclass
     clus
vv    EPHA3 MUTATED EPHA3 WILD-TYPE
  I               1              29
  II              7              50
  III             3              41
  IV              2              19

Clustering(49) Variable = CASP8 MUTATION ANALYSIS
D49V1, survival
                 sevent
clus2              0  1
  CASP8 MUTATED    7  0
  CASP8 WILD-TYPE 61 11
  CASP8 MUTATED CASP8 WILD-TYPE 
              7              72 
  CASP8 MUTATED CASP8 WILD-TYPE 
              0              11 
$`CASP8 MUTATED`
TCGA-AA-3518 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-A00A TCGA-AA-A00J 
        1.02         1.02         0.99         0.99        18.02        18.02 
TCGA-AA-A00R 
        0.99 

$`CASP8 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E 
        0.99         1.02         0.99        13.94        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  CASP8 MUTATED CASP8 WILD-TYPE 
           0.99            0.92 
  CASP8 MUTATED CASP8 WILD-TYPE 
          18.02           51.95 
  CASP8 MUTATED CASP8 WILD-TYPE 
           1.02           12.51 
[1] "1.0 - 18.0 (1.0)"  "0.9 - 52.0 (12.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CASP8 WILD-TYPE"   "CASP8 MUTATED"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CASP8 MUTATED" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CASP8 WILD-TYPE"   "CASP8 MUTATED"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CASP8 MUTATED" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CASP8 WILD-TYPE"   "CASP8 MUTATED"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE"   "CASP8 MUTATED" "CASP8 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CASP8 MUTATED" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CASP8 WILD-TYPE" "CASP8 WILD-TYPE" "CASP8 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CASP8 MUTATED      5    5
  CASP8 WILD-TYPE   72   73
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  FEMALE             5              72
  MALE               5              73
D49V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CASP8 MUTATED      7    3
  CASP8 WILD-TYPE  121   21
                               clus
vv                              CASP8 MUTATED CASP8 WILD-TYPE
  COLON ADENOCARCINOMA                      7             121
  COLON MUCINOUS ADENOCARCINOMA             3              21
D49V5, multiclass
    clus
vv   CASP8 MUTATED CASP8 WILD-TYPE
  T1             0               4
  T2             2              31
  T3             5              98
  T4             3              11
D49V6, multiclass
    clus
vv   CASP8 MUTATED CASP8 WILD-TYPE
  N0             9              82
  N1             1              29
  N2             0              34
D49V7, multiclass
     clus
vv    CASP8 MUTATED CASP8 WILD-TYPE
  M0             10             120
  M1              0              21
  M1A             0               1
D49V8, multiclass
     clus
vv    CASP8 MUTATED CASP8 WILD-TYPE
  I               2              28
  II              7              50
  III             1              43
  IV              0              21

Clustering(50) Variable = FLG MUTATION ANALYSIS
D50V1, survival
               sevent
clus2            0  1
  FLG MUTATED   12  4
  FLG WILD-TYPE 56  7
  FLG MUTATED FLG WILD-TYPE 
           16            63 
  FLG MUTATED FLG WILD-TYPE 
            4             7 
$`FLG MUTATED`
TCGA-A6-3808 TCGA-AA-3710 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3947 TCGA-AA-3952 
        9.14         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A00R TCGA-AA-A010 TCGA-AA-A01R TCGA-AA-A01V 
        1.02         4.01         0.99        20.98        35.01        35.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AY-4071 
       20.98        39.06        51.95         0.95 

$`FLG WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W 
       18.02        17.00        27.02        27.02        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X 
       13.02        38.07         1.02         1.02        33.04        26.01 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
       18.02        40.93        16.31 

  FLG MUTATED FLG WILD-TYPE 
         0.95          0.92 
  FLG MUTATED FLG WILD-TYPE 
        51.95         40.96 
  FLG MUTATED FLG WILD-TYPE 
        2.515        13.020 
[1] "0.9 - 52.0 (2.5)"  "0.9 - 41.0 (13.0)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "FLG MUTATED" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"FLG WILD-TYPE"   "FLG MUTATED" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"FLG WILD-TYPE"   "FLG MUTATED"   "FLG MUTATED"   "FLG MUTATED" "FLG WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"FLG WILD-TYPE" "FLG WILD-TYPE" "FLG WILD-TYPE"   "FLG MUTATED" 
[1] "hr=" "2.1"
D50V2, continuous
D50V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  FLG MUTATED     14   12
  FLG WILD-TYPE   63   66
        clus
vv       FLG MUTATED FLG WILD-TYPE
  FEMALE          14            63
  MALE            12            66
D50V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  FLG MUTATED     16    8
  FLG WILD-TYPE  112   16
                               clus
vv                              FLG MUTATED FLG WILD-TYPE
  COLON ADENOCARCINOMA                   16           112
  COLON MUCINOUS ADENOCARCINOMA           8            16
D50V5, multiclass
    clus
vv   FLG MUTATED FLG WILD-TYPE
  T1           2             2
  T2           5            28
  T3          15            88
  T4           4            10
D50V6, multiclass
    clus
vv   FLG MUTATED FLG WILD-TYPE
  N0          20            71
  N1           2            28
  N2           4            30
D50V7, multiclass
     clus
vv    FLG MUTATED FLG WILD-TYPE
  M0           23           107
  M1            1            20
  M1A           0             1
D50V8, multiclass
     clus
vv    FLG MUTATED FLG WILD-TYPE
  I             6            24
  II           13            44
  III           5            39
  IV            1            20

Clustering(51) Variable = DCAF4L2 MUTATION ANALYSIS
D51V1, survival
                   sevent
clus2                0  1
  DCAF4L2 MUTATED    4  1
  DCAF4L2 WILD-TYPE 64 10
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
                5                74 
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
                1                10 
$`DCAF4L2 MUTATED`
TCGA-AA-3842 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A01R TCGA-AA-A02W 
        1.02         1.02         4.01        35.01        40.96 

$`DCAF4L2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03         0.92        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
             1.02              0.92 
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
            40.96             51.95 
  DCAF4L2 MUTATED DCAF4L2 WILD-TYPE 
             4.01             12.00 
[1] "1.0 - 41.0 (4.0)"  "0.9 - 52.0 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"DCAF4L2 WILD-TYPE"   "DCAF4L2 MUTATED" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" "DCAF4L2 WILD-TYPE" 
[1] "hr=" "1.1"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DCAF4L2 MUTATED      4    5
  DCAF4L2 WILD-TYPE   73   73
        clus
vv       DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  FEMALE               4                73
  MALE                 5                73
D51V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  DCAF4L2 MUTATED      4    4
  DCAF4L2 WILD-TYPE  124   20
                               clus
vv                              DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  COLON ADENOCARCINOMA                        4               124
  COLON MUCINOUS ADENOCARCINOMA               4                20
D51V5, multiclass
    clus
vv   DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  T1               0                 4
  T2               4                29
  T3               3               100
  T4               2                12
D51V6, multiclass
    clus
vv   DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  N0               6                85
  N1               2                28
  N2               1                33
D51V7, multiclass
     clus
vv    DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  M0                8               122
  M1                0                21
  M1A               0                 1
D51V8, multiclass
     clus
vv    DCAF4L2 MUTATED DCAF4L2 WILD-TYPE
  I                 2                28
  II                3                54
  III               3                41
  IV                0                21

Clustering(52) Variable = TRPS1 MUTATION ANALYSIS
D52V1, survival
                 sevent
clus2              0  1
  TRPS1 MUTATED    8  1
  TRPS1 WILD-TYPE 60 10
  TRPS1 MUTATED TRPS1 WILD-TYPE 
              9              70 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
              1              10 
$`TRPS1 MUTATED`
TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99         1.02        13.94         4.01        20.98 
TCGA-AA-A01R TCGA-AA-A01V TCGA-AA-A02Y 
       35.01        35.01        39.95 

$`TRPS1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         1.02         0.99         0.99        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02         1.02        33.04        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  TRPS1 MUTATED TRPS1 WILD-TYPE 
           0.99            0.92 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
          39.95           51.95 
  TRPS1 MUTATED TRPS1 WILD-TYPE 
          13.94           11.46 
[1] "1.0 - 40.0 (13.9)" "0.9 - 52.0 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "TRPS1 MUTATED" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE"   "TRPS1 MUTATED" "TRPS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" "TRPS1 WILD-TYPE" 
[1] "hr=" "1.5"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPS1 MUTATED      5    8
  TRPS1 WILD-TYPE   72   70
        clus
vv       TRPS1 MUTATED TRPS1 WILD-TYPE
  FEMALE             5              72
  MALE               8              70
D52V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPS1 MUTATED      9    4
  TRPS1 WILD-TYPE  119   20
                               clus
vv                              TRPS1 MUTATED TRPS1 WILD-TYPE
  COLON ADENOCARCINOMA                      9             119
  COLON MUCINOUS ADENOCARCINOMA             4              20
D52V5, multiclass
    clus
vv   TRPS1 MUTATED TRPS1 WILD-TYPE
  T1             0               4
  T2             3              30
  T3             6              97
  T4             4              10
D52V6, multiclass
    clus
vv   TRPS1 MUTATED TRPS1 WILD-TYPE
  N0            11              80
  N1             1              29
  N2             1              33
D52V7, multiclass
     clus
vv    TRPS1 MUTATED TRPS1 WILD-TYPE
  M0             12             118
  M1              0              21
  M1A             0               1
D52V8, multiclass
     clus
vv    TRPS1 MUTATED TRPS1 WILD-TYPE
  I               2              28
  II              8              49
  III             2              42
  IV              0              21

Clustering(53) Variable = ROBO1 MUTATION ANALYSIS
D53V1, survival
                 sevent
clus2              0  1
  ROBO1 MUTATED    8  1
  ROBO1 WILD-TYPE 60 10
  ROBO1 MUTATED ROBO1 WILD-TYPE 
              9              70 
  ROBO1 MUTATED ROBO1 WILD-TYPE 
              1              10 
$`ROBO1 MUTATED`
TCGA-A6-3807 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3837 TCGA-AA-3947 TCGA-AA-3966 
       10.92         1.02         0.99         1.02         0.99         1.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A02O 
        4.01        20.98         0.92 

$`ROBO1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 
        0.99         1.02         0.99         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y 
       51.95        39.95         2.01         5.03        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  ROBO1 MUTATED ROBO1 WILD-TYPE 
           0.92            0.92 
  ROBO1 MUTATED ROBO1 WILD-TYPE 
          20.98           51.95 
  ROBO1 MUTATED ROBO1 WILD-TYPE 
          1.020          13.465 
[1] "0.9 - 21.0 (1.0)"  "0.9 - 52.0 (13.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ROBO1 WILD-TYPE"   "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "ROBO1 MUTATED" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" "ROBO1 WILD-TYPE" 
[1] "hr=" "1.6"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ROBO1 MUTATED      6    8
  ROBO1 WILD-TYPE   71   70
        clus
vv       ROBO1 MUTATED ROBO1 WILD-TYPE
  FEMALE             6              71
  MALE               8              70
D53V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ROBO1 MUTATED      7    6
  ROBO1 WILD-TYPE  121   18
                               clus
vv                              ROBO1 MUTATED ROBO1 WILD-TYPE
  COLON ADENOCARCINOMA                      7             121
  COLON MUCINOUS ADENOCARCINOMA             6              18
D53V5, multiclass
    clus
vv   ROBO1 MUTATED ROBO1 WILD-TYPE
  T1             0               4
  T2             1              32
  T3            10              93
  T4             3              11
D53V6, multiclass
    clus
vv   ROBO1 MUTATED ROBO1 WILD-TYPE
  N0            10              81
  N1             2              28
  N2             2              32
D53V7, multiclass
     clus
vv    ROBO1 MUTATED ROBO1 WILD-TYPE
  M0             13             117
  M1              1              20
  M1A             0               1
D53V8, multiclass
     clus
vv    ROBO1 MUTATED ROBO1 WILD-TYPE
  I               0              30
  II             10              47
  III             3              41
  IV              1              20

Clustering(54) Variable = FAT4 MUTATION ANALYSIS
D54V1, survival
                sevent
clus2             0  1
  FAT4 MUTATED   15  1
  FAT4 WILD-TYPE 53 10
  FAT4 MUTATED FAT4 WILD-TYPE 
            16             63 
  FAT4 MUTATED FAT4 WILD-TYPE 
             1             10 
$`FAT4 MUTATED`
TCGA-A6-2676 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3966 
       14.70         1.02         0.99         0.99         0.99         1.02 
TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A010 TCGA-AA-A01D 
        1.02        30.02         4.01        27.02        20.98         0.99 
TCGA-AA-A01R TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A02O 
       35.01        35.01        26.01         0.92 

$`FAT4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        18.02        19.00        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       17.00        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
       15.02        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
        1.02         1.02        33.04        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         2.01         5.03        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  FAT4 MUTATED FAT4 WILD-TYPE 
          0.92           0.92 
  FAT4 MUTATED FAT4 WILD-TYPE 
         35.01          51.95 
  FAT4 MUTATED FAT4 WILD-TYPE 
         2.515         12.000 
[1] "0.9 - 35.0 (2.5)"  "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"FAT4 WILD-TYPE"   "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"FAT4 WILD-TYPE"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "FAT4 MUTATED"   "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "FAT4 MUTATED" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"FAT4 WILD-TYPE" "FAT4 WILD-TYPE" "FAT4 WILD-TYPE" 
[1] "hr=" "1.9"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT4 MUTATED     16   13
  FAT4 WILD-TYPE   61   65
        clus
vv       FAT4 MUTATED FAT4 WILD-TYPE
  FEMALE           16             61
  MALE             13             65
D54V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FAT4 MUTATED     21    7
  FAT4 WILD-TYPE  107   17
                               clus
vv                              FAT4 MUTATED FAT4 WILD-TYPE
  COLON ADENOCARCINOMA                    21            107
  COLON MUCINOUS ADENOCARCINOMA            7             17
D54V5, multiclass
    clus
vv   FAT4 MUTATED FAT4 WILD-TYPE
  T1            0              4
  T2            6             27
  T3           18             85
  T4            4             10
D54V6, multiclass
    clus
vv   FAT4 MUTATED FAT4 WILD-TYPE
  N0           17             74
  N1            6             24
  N2            6             28
D54V7, multiclass
     clus
vv    FAT4 MUTATED FAT4 WILD-TYPE
  M0            27            103
  M1             1             20
  M1A            0              1
D54V8, multiclass
     clus
vv    FAT4 MUTATED FAT4 WILD-TYPE
  I              3             27
  II            13             44
  III           11             33
  IV             1             20

Clustering(55) Variable = PCDH17 MUTATION ANALYSIS
D55V1, survival
                  sevent
clus2               0  1
  PCDH17 MUTATED    9  0
  PCDH17 WILD-TYPE 59 11
  PCDH17 MUTATED PCDH17 WILD-TYPE 
               9               70 
  PCDH17 MUTATED PCDH17 WILD-TYPE 
               0               11 
$`PCDH17 MUTATED`
TCGA-AA-3715 TCGA-AA-3846 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00U 
        0.99         0.99         1.02        13.94        18.02        17.00 
TCGA-AA-A010 TCGA-AA-A01R TCGA-AA-A03J 
       20.98        35.01        40.93 

$`PCDH17 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A00D TCGA-AA-A00E 
        1.02         1.02         0.99         0.99        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
       27.02         0.99        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        16.31         0.95 

  PCDH17 MUTATED PCDH17 WILD-TYPE 
            0.99             0.92 
  PCDH17 MUTATED PCDH17 WILD-TYPE 
           40.93            51.95 
  PCDH17 MUTATED PCDH17 WILD-TYPE 
           17.00            10.03 
[1] "1.0 - 40.9 (17.0)" "0.9 - 52.0 (10.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE"   "PCDH17 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE"   "PCDH17 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE"   "PCDH17 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH17 WILD-TYPE"   "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
  "PCDH17 MUTATED" "PCDH17 WILD-TYPE" "PCDH17 WILD-TYPE" 
[1] "hr="     "8.4e+07"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH17 MUTATED      7    7
  PCDH17 WILD-TYPE   70   71
        clus
vv       PCDH17 MUTATED PCDH17 WILD-TYPE
  FEMALE              7               70
  MALE                7               71
D55V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH17 MUTATED     13    1
  PCDH17 WILD-TYPE  115   23
                               clus
vv                              PCDH17 MUTATED PCDH17 WILD-TYPE
  COLON ADENOCARCINOMA                      13              115
  COLON MUCINOUS ADENOCARCINOMA              1               23
D55V5, multiclass
    clus
vv   PCDH17 MUTATED PCDH17 WILD-TYPE
  T1              0                4
  T2              3               30
  T3              9               94
  T4              2               12
D55V6, multiclass
    clus
vv   PCDH17 MUTATED PCDH17 WILD-TYPE
  N0             12               79
  N1              1               29
  N2              1               33
D55V7, multiclass
     clus
vv    PCDH17 MUTATED PCDH17 WILD-TYPE
  M0              13              117
  M1               0               21
  M1A              0                1
D55V8, multiclass
     clus
vv    PCDH17 MUTATED PCDH17 WILD-TYPE
  I                2               28
  II               9               48
  III              2               42
  IV               0               21

Clustering(56) Variable = ZFHX4 MUTATION ANALYSIS
D56V1, survival
                 sevent
clus2              0  1
  ZFHX4 MUTATED    7  4
  ZFHX4 WILD-TYPE 61  7
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
             11              68 
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
              4               7 
$`ZFHX4 MUTATED`
TCGA-AA-3666 TCGA-AA-3715 TCGA-AA-3848 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3966 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A02H TCGA-AY-4071 
        1.02         4.01        20.98         2.01         0.95 

$`ZFHX4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3854 
        0.99         1.02         1.02         0.92         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 
       40.93        16.31 

  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
           0.95            0.92 
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
          20.98           51.95 
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
          1.020          13.925 
[1] "0.9 - 21.0 (1.0)"  "0.9 - 52.0 (13.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED"   "ZFHX4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED"   "ZFHX4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED"   "ZFHX4 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ZFHX4 WILD-TYPE" "ZFHX4 WILD-TYPE"   "ZFHX4 MUTATED" 
[1] "hr=" "11" 
D56V2, continuous
D56V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFHX4 MUTATED     10    7
  ZFHX4 WILD-TYPE   67   71
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  FEMALE            10              67
  MALE               7              71
D56V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFHX4 MUTATED     12    4
  ZFHX4 WILD-TYPE  116   20
                               clus
vv                              ZFHX4 MUTATED ZFHX4 WILD-TYPE
  COLON ADENOCARCINOMA                     12             116
  COLON MUCINOUS ADENOCARCINOMA             4              20
D56V5, multiclass
    clus
vv   ZFHX4 MUTATED ZFHX4 WILD-TYPE
  T1             2               2
  T2             2              31
  T3             9              94
  T4             4              10
D56V6, multiclass
    clus
vv   ZFHX4 MUTATED ZFHX4 WILD-TYPE
  N0            13              78
  N1             2              28
  N2             2              32
D56V7, multiclass
     clus
vv    ZFHX4 MUTATED ZFHX4 WILD-TYPE
  M0             14             116
  M1              1              20
  M1A             0               1
D56V8, multiclass
     clus
vv    ZFHX4 MUTATED ZFHX4 WILD-TYPE
  I               3              27
  II              9              48
  III             3              41
  IV              1              20

Clustering(57) Variable = NCKAP5 MUTATION ANALYSIS
D57V1, survival
                  sevent
clus2               0  1
  NCKAP5 MUTATED    8  1
  NCKAP5 WILD-TYPE 60 10
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
               9               70 
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
               1               10 
$`NCKAP5 MUTATED`
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        1.02         0.99         1.02         1.02         4.01        20.98 
TCGA-AA-A01R TCGA-AA-A01V TCGA-AA-A02F 
       35.01        35.01        39.95 

$`NCKAP5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02         1.02        33.04        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       51.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
            0.99             0.92 
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
           39.95            51.95 
  NCKAP5 MUTATED NCKAP5 WILD-TYPE 
            4.01            12.00 
[1] "1.0 - 40.0 (4.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"NCKAP5 WILD-TYPE"   "NCKAP5 MUTATED" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" "NCKAP5 WILD-TYPE" 
[1] "hr=" "1.5"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NCKAP5 MUTATED      7    6
  NCKAP5 WILD-TYPE   70   72
        clus
vv       NCKAP5 MUTATED NCKAP5 WILD-TYPE
  FEMALE              7               70
  MALE                6               72
D57V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NCKAP5 MUTATED     10    3
  NCKAP5 WILD-TYPE  118   21
                               clus
vv                              NCKAP5 MUTATED NCKAP5 WILD-TYPE
  COLON ADENOCARCINOMA                      10              118
  COLON MUCINOUS ADENOCARCINOMA              3               21
D57V5, multiclass
    clus
vv   NCKAP5 MUTATED NCKAP5 WILD-TYPE
  T1              0                4
  T2              3               30
  T3              7               96
  T4              3               11
D57V6, multiclass
    clus
vv   NCKAP5 MUTATED NCKAP5 WILD-TYPE
  N0              7               84
  N1              4               26
  N2              2               32
D57V7, multiclass
     clus
vv    NCKAP5 MUTATED NCKAP5 WILD-TYPE
  M0              10              120
  M1               2               19
  M1A              0                1
D57V8, multiclass
     clus
vv    NCKAP5 MUTATED NCKAP5 WILD-TYPE
  I                1               29
  II               5               52
  III              4               40
  IV               2               19

Clustering(58) Variable = POSTN MUTATION ANALYSIS
D58V1, survival
                 sevent
clus2              0  1
  POSTN MUTATED    4  2
  POSTN WILD-TYPE 64  9
  POSTN MUTATED POSTN WILD-TYPE 
              6              73 
  POSTN MUTATED POSTN WILD-TYPE 
              2               9 
$`POSTN MUTATED`
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A01G TCGA-AA-A01R 
        1.02         1.02         1.02         4.01        12.00        35.01 

$`POSTN WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         0.99         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01I TCGA-AA-A01K 
       20.98        15.02         0.99        13.02        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  POSTN MUTATED POSTN WILD-TYPE 
           1.02            0.92 
  POSTN MUTATED POSTN WILD-TYPE 
          35.01           51.95 
  POSTN MUTATED POSTN WILD-TYPE 
          2.515          13.020 
[1] "1.0 - 35.0 (2.5)"  "0.9 - 52.0 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
  "POSTN MUTATED"   "POSTN MUTATED" "POSTN WILD-TYPE"   "POSTN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
  "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
  "POSTN MUTATED"   "POSTN MUTATED" "POSTN WILD-TYPE"   "POSTN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
  "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
  "POSTN MUTATED"   "POSTN MUTATED" "POSTN WILD-TYPE"   "POSTN MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
  "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"POSTN WILD-TYPE"   "POSTN MUTATED" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"POSTN WILD-TYPE" "POSTN WILD-TYPE" "POSTN WILD-TYPE" 
[1] "hr=" "4"  
D58V2, continuous
D58V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POSTN MUTATED      5    6
  POSTN WILD-TYPE   72   72
        clus
vv       POSTN MUTATED POSTN WILD-TYPE
  FEMALE             5              72
  MALE               6              72
D58V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POSTN MUTATED      7    4
  POSTN WILD-TYPE  121   20
                               clus
vv                              POSTN MUTATED POSTN WILD-TYPE
  COLON ADENOCARCINOMA                      7             121
  COLON MUCINOUS ADENOCARCINOMA             4              20
D58V5, multiclass
    clus
vv   POSTN MUTATED POSTN WILD-TYPE
  T1             0               4
  T2             2              31
  T3             8              95
  T4             1              13
D58V6, multiclass
    clus
vv   POSTN MUTATED POSTN WILD-TYPE
  N0             9              82
  N1             0              30
  N2             2              32
D58V7, multiclass
     clus
vv    POSTN MUTATED POSTN WILD-TYPE
  M0             10             120
  M1              0              21
  M1A             0               1
D58V8, multiclass
     clus
vv    POSTN MUTATED POSTN WILD-TYPE
  I               1              29
  II              7              50
  III             2              42
  IV              0              21

Clustering(59) Variable = ADAM29 MUTATION ANALYSIS
D59V1, survival
                  sevent
clus2               0  1
  ADAM29 MUTATED    6  0
  ADAM29 WILD-TYPE 62 11
  ADAM29 MUTATED ADAM29 WILD-TYPE 
               6               73 
  ADAM29 MUTATED ADAM29 WILD-TYPE 
               0               11 
$`ADAM29 MUTATED`
TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3977 TCGA-AA-A00R TCGA-AA-A02F TCGA-AA-A02W 
        0.99         1.02         1.02         0.99        39.95        40.96 

$`ADAM29 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3949 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
        4.01        27.02        27.02        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02H 
       35.01        26.01        20.98        39.06        51.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  ADAM29 MUTATED ADAM29 WILD-TYPE 
            0.99             0.92 
  ADAM29 MUTATED ADAM29 WILD-TYPE 
           40.96            51.95 
  ADAM29 MUTATED ADAM29 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 41.0 (1.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE"   "ADAM29 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ADAM29 WILD-TYPE"   "ADAM29 MUTATED" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" "ADAM29 WILD-TYPE" 
[1] "hr="     "9.5e+07"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ADAM29 MUTATED      7    2
  ADAM29 WILD-TYPE   70   76
        clus
vv       ADAM29 MUTATED ADAM29 WILD-TYPE
  FEMALE              7               70
  MALE                2               76
D59V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ADAM29 MUTATED      8    1
  ADAM29 WILD-TYPE  120   23
                               clus
vv                              ADAM29 MUTATED ADAM29 WILD-TYPE
  COLON ADENOCARCINOMA                       8              120
  COLON MUCINOUS ADENOCARCINOMA              1               23
D59V5, multiclass
    clus
vv   ADAM29 MUTATED ADAM29 WILD-TYPE
  T1              1                3
  T2              4               29
  T3              3              100
  T4              1               13
D59V6, multiclass
    clus
vv   ADAM29 MUTATED ADAM29 WILD-TYPE
  N0              7               84
  N1              2               28
  N2              0               34
D59V7, multiclass
     clus
vv    ADAM29 MUTATED ADAM29 WILD-TYPE
  M0               6              124
  M1               1               20
  M1A              1                0
D59V8, multiclass
     clus
vv    ADAM29 MUTATED ADAM29 WILD-TYPE
  I                4               26
  II               2               55
  III              0               44
  IV               2               19

Clustering(60) Variable = FLRT2 MUTATION ANALYSIS
D60V1, survival
                 sevent
clus2              0  1
  FLRT2 MUTATED    3  1
  FLRT2 WILD-TYPE 65 10
  FLRT2 MUTATED FLRT2 WILD-TYPE 
              4              75 
  FLRT2 MUTATED FLRT2 WILD-TYPE 
              1              10 
$`FLRT2 MUTATED`
TCGA-A6-2676 TCGA-AA-A00N TCGA-AA-A00Z TCGA-AA-A010 
       14.70         4.01        21.99        20.98 

$`FLRT2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       14.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  FLRT2 MUTATED FLRT2 WILD-TYPE 
           4.01            0.92 
  FLRT2 MUTATED FLRT2 WILD-TYPE 
          21.99           51.95 
  FLRT2 MUTATED FLRT2 WILD-TYPE 
          17.84           10.92 
[1] "4.0 - 22.0 (17.8)" "0.9 - 52.0 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FLRT2 WILD-TYPE"   "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE"   "FLRT2 MUTATED" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FLRT2 MUTATED" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" "FLRT2 WILD-TYPE" 
[1] "hr=" "1.6"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FLRT2 MUTATED      7    4
  FLRT2 WILD-TYPE   70   74
        clus
vv       FLRT2 MUTATED FLRT2 WILD-TYPE
  FEMALE             7              70
  MALE               4              74
D60V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FLRT2 MUTATED      8    2
  FLRT2 WILD-TYPE  120   22
                               clus
vv                              FLRT2 MUTATED FLRT2 WILD-TYPE
  COLON ADENOCARCINOMA                      8             120
  COLON MUCINOUS ADENOCARCINOMA             2              22
D60V5, multiclass
    clus
vv   FLRT2 MUTATED FLRT2 WILD-TYPE
  T1             1               3
  T2             0              33
  T3             7              96
  T4             2              12
D60V6, multiclass
    clus
vv   FLRT2 MUTATED FLRT2 WILD-TYPE
  N0             8              83
  N1             1              29
  N2             2              32
D60V7, multiclass
     clus
vv    FLRT2 MUTATED FLRT2 WILD-TYPE
  M0             11             119
  M1              0              21
  M1A             0               1
D60V8, multiclass
     clus
vv    FLRT2 MUTATED FLRT2 WILD-TYPE
  I               1              29
  II              7              50
  III             3              41
  IV              0              21

Clustering(61) Variable = ZC3H13 MUTATION ANALYSIS
D61V1, survival
                  sevent
clus2               0  1
  ZC3H13 MUTATED   10  1
  ZC3H13 WILD-TYPE 58 10
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              11               68 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
               1               10 
$`ZC3H13 MUTATED`
TCGA-A6-2677 TCGA-AA-3555 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A00N 
       17.79         0.99         0.99         1.02        18.02         4.01 
TCGA-AA-A00R TCGA-AA-A010 TCGA-AA-A01F TCGA-AA-A01Q TCGA-AA-A01R 
        0.99        20.98        13.02         1.02        35.01 

$`ZC3H13 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        14.70        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       30.02        34.03        18.02        17.00        27.02        27.02 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01G 
       17.00        14.99        21.99        15.02         0.99        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       12.00        13.02        38.07         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
            0.99             0.92 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
           35.01            51.95 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
            4.01            12.00 
[1] "1.0 - 35.0 (4.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ZC3H13 MUTATED"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ZC3H13 MUTATED"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE"   "ZC3H13 MUTATED" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "ZC3H13 MUTATED"   "ZC3H13 MUTATED" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" "ZC3H13 WILD-TYPE" 
[1] "hr=" "1.2"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZC3H13 MUTATED      8    9
  ZC3H13 WILD-TYPE   69   69
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  FEMALE              8               69
  MALE                9               69
D61V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZC3H13 MUTATED     10    6
  ZC3H13 WILD-TYPE  118   18
                               clus
vv                              ZC3H13 MUTATED ZC3H13 WILD-TYPE
  COLON ADENOCARCINOMA                      10              118
  COLON MUCINOUS ADENOCARCINOMA              6               18
D61V5, multiclass
    clus
vv   ZC3H13 MUTATED ZC3H13 WILD-TYPE
  T1              0                4
  T2              3               30
  T3             10               93
  T4              4               10
D61V6, multiclass
    clus
vv   ZC3H13 MUTATED ZC3H13 WILD-TYPE
  N0             11               80
  N1              3               27
  N2              3               31
D61V7, multiclass
     clus
vv    ZC3H13 MUTATED ZC3H13 WILD-TYPE
  M0              16              114
  M1               0               21
  M1A              0                1
D61V8, multiclass
     clus
vv    ZC3H13 MUTATED ZC3H13 WILD-TYPE
  I                2               28
  II               8               49
  III              6               38
  IV               0               21

Clustering(62) Variable = NRXN3 MUTATION ANALYSIS
D62V1, survival
                 sevent
clus2              0  1
  NRXN3 MUTATED    5  1
  NRXN3 WILD-TYPE 63 10
  NRXN3 MUTATED NRXN3 WILD-TYPE 
              6              73 
  NRXN3 MUTATED NRXN3 WILD-TYPE 
              1              10 
$`NRXN3 MUTATED`
TCGA-A6-2672 TCGA-A6-2678 TCGA-AA-3949 TCGA-AA-A00A TCGA-AA-A00N TCGA-AA-A010 
       16.54        14.37         0.99        18.02         4.01        20.98 

$`NRXN3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2683 TCGA-A6-3807 
       13.91        17.19        14.70        17.79        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D 
        1.02         0.99         1.02         0.99        13.94        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  NRXN3 MUTATED NRXN3 WILD-TYPE 
           0.99            0.92 
  NRXN3 MUTATED NRXN3 WILD-TYPE 
          20.98           51.95 
  NRXN3 MUTATED NRXN3 WILD-TYPE 
         15.455          10.920 
[1] "1.0 - 21.0 (15.5)" "0.9 - 52.0 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NRXN3 WILD-TYPE"   "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NRXN3 MUTATED" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" "NRXN3 WILD-TYPE" 
[1] "hr=" "1.2"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN3 MUTATED      7    8
  NRXN3 WILD-TYPE   70   70
        clus
vv       NRXN3 MUTATED NRXN3 WILD-TYPE
  FEMALE             7              70
  MALE               8              70
D62V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NRXN3 MUTATED     11    4
  NRXN3 WILD-TYPE  117   20
                               clus
vv                              NRXN3 MUTATED NRXN3 WILD-TYPE
  COLON ADENOCARCINOMA                     11             117
  COLON MUCINOUS ADENOCARCINOMA             4              20
D62V5, multiclass
    clus
vv   NRXN3 MUTATED NRXN3 WILD-TYPE
  T1             0               4
  T2             3              30
  T3            10              93
  T4             2              12
D62V6, multiclass
    clus
vv   NRXN3 MUTATED NRXN3 WILD-TYPE
  N0            10              81
  N1             4              26
  N2             1              33
D62V7, multiclass
     clus
vv    NRXN3 MUTATED NRXN3 WILD-TYPE
  M0             14             116
  M1              0              21
  M1A             0               1
D62V8, multiclass
     clus
vv    NRXN3 MUTATED NRXN3 WILD-TYPE
  I               2              28
  II              7              50
  III             5              39
  IV              0              21

Clustering(63) Variable = SFMBT2 MUTATION ANALYSIS
D63V1, survival
                  sevent
clus2               0  1
  SFMBT2 MUTATED    7  0
  SFMBT2 WILD-TYPE 61 11
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
               7               72 
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
               0               11 
$`SFMBT2 MUTATED`
TCGA-A6-2676 TCGA-AA-3811 TCGA-AA-3842 TCGA-AA-3939 TCGA-AA-3977 TCGA-AA-A010 
       14.70         0.99         1.02         0.99         1.02        20.98 
TCGA-AA-A01R 
       35.01 

$`SFMBT2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        0.99         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
            0.99             0.92 
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
           35.01            51.95 
  SFMBT2 MUTATED SFMBT2 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 35.0 (1.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SFMBT2 WILD-TYPE"   "SFMBT2 MUTATED" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" "SFMBT2 WILD-TYPE" 
[1] "hr="     "7.5e+07"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SFMBT2 MUTATED      5    7
  SFMBT2 WILD-TYPE   72   71
        clus
vv       SFMBT2 MUTATED SFMBT2 WILD-TYPE
  FEMALE              5               72
  MALE                7               71
D63V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SFMBT2 MUTATED      9    3
  SFMBT2 WILD-TYPE  119   21
                               clus
vv                              SFMBT2 MUTATED SFMBT2 WILD-TYPE
  COLON ADENOCARCINOMA                       9              119
  COLON MUCINOUS ADENOCARCINOMA              3               21
D63V5, multiclass
    clus
vv   SFMBT2 MUTATED SFMBT2 WILD-TYPE
  T1              0                4
  T2              4               29
  T3              5               98
  T4              2               12
D63V6, multiclass
    clus
vv   SFMBT2 MUTATED SFMBT2 WILD-TYPE
  N0              7               84
  N1              3               27
  N2              2               32
D63V7, multiclass
     clus
vv    SFMBT2 MUTATED SFMBT2 WILD-TYPE
  M0               9              121
  M1               2               19
  M1A              0                1
D63V8, multiclass
     clus
vv    SFMBT2 MUTATED SFMBT2 WILD-TYPE
  I                2               28
  II               4               53
  III              3               41
  IV               2               19

Clustering(64) Variable = TMEM132D MUTATION ANALYSIS
D64V1, survival
                    sevent
clus2                 0  1
  TMEM132D MUTATED   10  1
  TMEM132D WILD-TYPE 58 10
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                11                 68 
  TMEM132D MUTATED TMEM132D WILD-TYPE 
                 1                 10 
$`TMEM132D MUTATED`
TCGA-A6-2672 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3844 TCGA-AA-3947 TCGA-AA-3949 
       16.54         1.02         0.99         0.92         0.99         0.99 
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A00R TCGA-AA-A01R TCGA-AA-A01T 
        1.02         4.01         0.99        35.01        33.04 

$`TMEM132D WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         1.02         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W 
       18.02        17.00        27.02        27.02        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01V 
       12.00        13.02        38.07         1.02         1.02        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  TMEM132D MUTATED TMEM132D WILD-TYPE 
              0.92               0.92 
  TMEM132D MUTATED TMEM132D WILD-TYPE 
             35.01              51.95 
  TMEM132D MUTATED TMEM132D WILD-TYPE 
              1.02              13.02 
[1] "0.9 - 35.0 (1.0)"  "0.9 - 52.0 (13.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "TMEM132D MUTATED"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AY-4071 
"TMEM132D WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "TMEM132D MUTATED"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AY-4071 
"TMEM132D WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "TMEM132D MUTATED"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE"   "TMEM132D MUTATED" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"TMEM132D WILD-TYPE"   "TMEM132D MUTATED" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
  "TMEM132D MUTATED" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" "TMEM132D WILD-TYPE" 
        TCGA-AY-4071 
"TMEM132D WILD-TYPE" 
[1] "hr=" "1.1"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMEM132D MUTATED     10    5
  TMEM132D WILD-TYPE   67   73
        clus
vv       TMEM132D MUTATED TMEM132D WILD-TYPE
  FEMALE               10                 67
  MALE                  5                 73
D64V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  TMEM132D MUTATED     10    5
  TMEM132D WILD-TYPE  118   19
                               clus
vv                              TMEM132D MUTATED TMEM132D WILD-TYPE
  COLON ADENOCARCINOMA                        10                118
  COLON MUCINOUS ADENOCARCINOMA                5                 19
D64V5, multiclass
    clus
vv   TMEM132D MUTATED TMEM132D WILD-TYPE
  T1                0                  4
  T2                2                 31
  T3               11                 92
  T4                2                 12
D64V6, multiclass
    clus
vv   TMEM132D MUTATED TMEM132D WILD-TYPE
  N0                7                 84
  N1                4                 26
  N2                4                 30
D64V7, multiclass
     clus
vv    TMEM132D MUTATED TMEM132D WILD-TYPE
  M0                14                116
  M1                 0                 21
  M1A                0                  1
D64V8, multiclass
     clus
vv    TMEM132D MUTATED TMEM132D WILD-TYPE
  I                  1                 29
  II                 5                 52
  III                8                 36
  IV                 0                 21

Clustering(65) Variable = LPPR4 MUTATION ANALYSIS
D65V1, survival
                 sevent
clus2              0  1
  LPPR4 MUTATED    5  0
  LPPR4 WILD-TYPE 63 11
  LPPR4 MUTATED LPPR4 WILD-TYPE 
              5              74 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
              0              11 
$`LPPR4 MUTATED`
TCGA-AA-3710 TCGA-AA-3877 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A01Q 
        1.02         0.99         1.02         1.02         1.02 

$`LPPR4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  LPPR4 MUTATED LPPR4 WILD-TYPE 
           0.99            0.92 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
           1.02           51.95 
  LPPR4 MUTATED LPPR4 WILD-TYPE 
           1.02           13.02 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 52.0 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LPPR4 WILD-TYPE"   "LPPR4 MUTATED" "LPPR4 WILD-TYPE"   "LPPR4 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "LPPR4 MUTATED" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" "LPPR4 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D65V2, continuous
D65V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPPR4 MUTATED      6    5
  LPPR4 WILD-TYPE   71   73
        clus
vv       LPPR4 MUTATED LPPR4 WILD-TYPE
  FEMALE             6              71
  MALE               5              73
D65V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LPPR4 MUTATED      9    2
  LPPR4 WILD-TYPE  119   22
                               clus
vv                              LPPR4 MUTATED LPPR4 WILD-TYPE
  COLON ADENOCARCINOMA                      9             119
  COLON MUCINOUS ADENOCARCINOMA             2              22
D65V5, multiclass
    clus
vv   LPPR4 MUTATED LPPR4 WILD-TYPE
  T1             1               3
  T2             2              31
  T3             7              96
  T4             1              13
D65V6, multiclass
    clus
vv   LPPR4 MUTATED LPPR4 WILD-TYPE
  N0             6              85
  N1             5              25
  N2             0              34
D65V7, multiclass
     clus
vv    LPPR4 MUTATED LPPR4 WILD-TYPE
  M0              9             121
  M1              1              20
  M1A             0               1
D65V8, multiclass
     clus
vv    LPPR4 MUTATED LPPR4 WILD-TYPE
  I               1              29
  II              4              53
  III             4              40
  IV              1              20

Clustering(66) Variable = ESR1 MUTATION ANALYSIS
D66V1, survival
                sevent
clus2             0  1
  ESR1 MUTATED    5  1
  ESR1 WILD-TYPE 63 10
  ESR1 MUTATED ESR1 WILD-TYPE 
             6             73 
  ESR1 MUTATED ESR1 WILD-TYPE 
             1             10 
$`ESR1 MUTATED`
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01Q 
        0.99         0.99         1.02         4.01        20.98         1.02 

$`ESR1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  ESR1 MUTATED ESR1 WILD-TYPE 
          0.99           0.92 
  ESR1 MUTATED ESR1 WILD-TYPE 
         20.98          51.95 
  ESR1 MUTATED ESR1 WILD-TYPE 
          1.02          13.02 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (13.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED"   "ESR1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ESR1 WILD-TYPE"   "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED"   "ESR1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ESR1 WILD-TYPE"   "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED"   "ESR1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE"   "ESR1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ESR1 WILD-TYPE"   "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ESR1 MUTATED" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"ESR1 WILD-TYPE" "ESR1 WILD-TYPE" "ESR1 WILD-TYPE" 
[1] "hr=" "2.2"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ESR1 MUTATED      5    6
  ESR1 WILD-TYPE   72   72
        clus
vv       ESR1 MUTATED ESR1 WILD-TYPE
  FEMALE            5             72
  MALE              6             72
D66V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ESR1 MUTATED      8    3
  ESR1 WILD-TYPE  120   21
                               clus
vv                              ESR1 MUTATED ESR1 WILD-TYPE
  COLON ADENOCARCINOMA                     8            120
  COLON MUCINOUS ADENOCARCINOMA            3             21
D66V5, multiclass
    clus
vv   ESR1 MUTATED ESR1 WILD-TYPE
  T1            0              4
  T2            2             31
  T3            5             98
  T4            4             10
D66V6, multiclass
    clus
vv   ESR1 MUTATED ESR1 WILD-TYPE
  N0            7             84
  N1            3             27
  N2            1             33
D66V7, multiclass
     clus
vv    ESR1 MUTATED ESR1 WILD-TYPE
  M0            10            120
  M1             0             21
  M1A            0              1
D66V8, multiclass
     clus
vv    ESR1 MUTATED ESR1 WILD-TYPE
  I              1             29
  II             5             52
  III            4             40
  IV             0             21

Clustering(67) Variable = SYNE1 MUTATION ANALYSIS
D67V1, survival
                 sevent
clus2              0  1
  SYNE1 MUTATED   18  2
  SYNE1 WILD-TYPE 50  9
  SYNE1 MUTATED SYNE1 WILD-TYPE 
             20              59 
  SYNE1 MUTATED SYNE1 WILD-TYPE 
              2               9 
$`SYNE1 MUTATED`
TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2683 TCGA-A6-3808 TCGA-AA-3518 
       16.54        14.70        17.79        15.52         9.14         1.02 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3854 
        0.99         1.02         1.02         1.02         0.99         1.02 
TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A00U TCGA-AA-A010 
        0.99         1.02        30.02         4.01        17.00        20.98 
TCGA-AA-A01Q TCGA-AA-A02W 
        1.02        40.96 

$`SYNE1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2678 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3526 
       13.91        17.19        14.37        10.92         8.09         0.99 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 
        0.99         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.92         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02        27.02         0.99        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  SYNE1 MUTATED SYNE1 WILD-TYPE 
           0.99            0.92 
  SYNE1 MUTATED SYNE1 WILD-TYPE 
          40.96           51.95 
  SYNE1 MUTATED SYNE1 WILD-TYPE 
          2.515          13.020 
[1] "1.0 - 41.0 (2.5)"  "0.9 - 52.0 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SYNE1 MUTATED"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SYNE1 MUTATED"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "SYNE1 MUTATED"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE"   "SYNE1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SYNE1 WILD-TYPE"   "SYNE1 MUTATED" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" "SYNE1 WILD-TYPE" 
[1] "hr=" "1.3"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYNE1 MUTATED     20   17
  SYNE1 WILD-TYPE   57   61
        clus
vv       SYNE1 MUTATED SYNE1 WILD-TYPE
  FEMALE            20              57
  MALE              17              61
D67V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SYNE1 MUTATED     26   10
  SYNE1 WILD-TYPE  102   14
                               clus
vv                              SYNE1 MUTATED SYNE1 WILD-TYPE
  COLON ADENOCARCINOMA                     26             102
  COLON MUCINOUS ADENOCARCINOMA            10              14
D67V5, multiclass
    clus
vv   SYNE1 MUTATED SYNE1 WILD-TYPE
  T1             1               3
  T2             5              28
  T3            26              77
  T4             4              10
D67V6, multiclass
    clus
vv   SYNE1 MUTATED SYNE1 WILD-TYPE
  N0            24              67
  N1             9              21
  N2             4              30
D67V7, multiclass
     clus
vv    SYNE1 MUTATED SYNE1 WILD-TYPE
  M0             32              98
  M1              3              18
  M1A             0               1
D67V8, multiclass
     clus
vv    SYNE1 MUTATED SYNE1 WILD-TYPE
  I               4              26
  II             17              40
  III            11              33
  IV              3              18

Clustering(68) Variable = LIFR MUTATION ANALYSIS
D68V1, survival
                sevent
clus2             0  1
  LIFR MUTATED    5  2
  LIFR WILD-TYPE 63  9
  LIFR MUTATED LIFR WILD-TYPE 
             7             72 
  LIFR MUTATED LIFR WILD-TYPE 
             2              9 
$`LIFR MUTATED`
TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A00N 
        1.02         0.99         1.02         1.02        18.02         4.01 
TCGA-AA-A010 
       20.98 

$`LIFR WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         0.99         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       30.02        34.03        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  LIFR MUTATED LIFR WILD-TYPE 
          0.99           0.92 
  LIFR MUTATED LIFR WILD-TYPE 
         20.98          51.95 
  LIFR MUTATED LIFR WILD-TYPE 
          1.02          12.51 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (12.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LIFR MUTATED" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LIFR MUTATED" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LIFR MUTATED" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LIFR WILD-TYPE" "LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"LIFR WILD-TYPE"   "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LIFR MUTATED" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"LIFR WILD-TYPE" "LIFR WILD-TYPE" "LIFR WILD-TYPE" 
[1] "hr=" "3.3"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIFR MUTATED      5    8
  LIFR WILD-TYPE   72   70
        clus
vv       LIFR MUTATED LIFR WILD-TYPE
  FEMALE            5             72
  MALE              8             70
D68V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LIFR MUTATED     10    3
  LIFR WILD-TYPE  118   21
                               clus
vv                              LIFR MUTATED LIFR WILD-TYPE
  COLON ADENOCARCINOMA                    10            118
  COLON MUCINOUS ADENOCARCINOMA            3             21
D68V5, multiclass
    clus
vv   LIFR MUTATED LIFR WILD-TYPE
  T1            1              3
  T2            3             30
  T3            6             97
  T4            3             11
D68V6, multiclass
    clus
vv   LIFR MUTATED LIFR WILD-TYPE
  N0            9             82
  N1            2             28
  N2            2             32
D68V7, multiclass
     clus
vv    LIFR MUTATED LIFR WILD-TYPE
  M0            10            120
  M1             1             20
  M1A            0              1
D68V8, multiclass
     clus
vv    LIFR MUTATED LIFR WILD-TYPE
  I              2             28
  II             5             52
  III            3             41
  IV             1             20

Clustering(69) Variable = CHRM2 MUTATION ANALYSIS
D69V1, survival
                 sevent
clus2              0  1
  CHRM2 MUTATED    3  1
  CHRM2 WILD-TYPE 65 10
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              4              75 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
              1              10 
$`CHRM2 MUTATED`
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-A00N TCGA-AA-A010 
        1.02         0.99         4.01        20.98 

$`CHRM2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  CHRM2 MUTATED CHRM2 WILD-TYPE 
           0.99            0.92 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
          20.98           51.95 
  CHRM2 MUTATED CHRM2 WILD-TYPE 
          2.515          12.000 
[1] "1.0 - 21.0 (2.5)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CHRM2 WILD-TYPE"   "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CHRM2 MUTATED" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" "CHRM2 WILD-TYPE" 
[1] "hr=" "2.7"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHRM2 MUTATED      5    3
  CHRM2 WILD-TYPE   72   75
        clus
vv       CHRM2 MUTATED CHRM2 WILD-TYPE
  FEMALE             5              72
  MALE               3              75
D69V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CHRM2 MUTATED      6    2
  CHRM2 WILD-TYPE  122   22
                               clus
vv                              CHRM2 MUTATED CHRM2 WILD-TYPE
  COLON ADENOCARCINOMA                      6             122
  COLON MUCINOUS ADENOCARCINOMA             2              22
D69V5, multiclass
    clus
vv   CHRM2 MUTATED CHRM2 WILD-TYPE
  T1             0               4
  T2             0              33
  T3             4              99
  T4             4              10
D69V6, multiclass
    clus
vv   CHRM2 MUTATED CHRM2 WILD-TYPE
  N0             5              86
  N1             1              29
  N2             2              32
D69V7, multiclass
     clus
vv    CHRM2 MUTATED CHRM2 WILD-TYPE
  M0              5             125
  M1              3              18
  M1A             0               1
D69V8, multiclass
     clus
vv    CHRM2 MUTATED CHRM2 WILD-TYPE
  I               0              30
  II              5              52
  III             0              44
  IV              3              18

Clustering(70) Variable = CDH10 MUTATION ANALYSIS
D70V1, survival
                 sevent
clus2              0  1
  CDH10 MUTATED    6  1
  CDH10 WILD-TYPE 62 10
  CDH10 MUTATED CDH10 WILD-TYPE 
              7              72 
  CDH10 MUTATED CDH10 WILD-TYPE 
              1              10 
$`CDH10 MUTATED`
TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01I 
        0.99         1.02         1.02         4.01        20.98        12.00 
TCGA-AA-A01Z 
       20.98 

$`CDH10 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P 
       15.02         0.99        13.02        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  CDH10 MUTATED CDH10 WILD-TYPE 
           0.99            0.92 
  CDH10 MUTATED CDH10 WILD-TYPE 
          20.98           51.95 
  CDH10 MUTATED CDH10 WILD-TYPE 
           4.01           12.51 
[1] "1.0 - 21.0 (4.0)"  "0.9 - 52.0 (12.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE"   "CDH10 MUTATED" "CDH10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CDH10 WILD-TYPE" "CDH10 WILD-TYPE" "CDH10 WILD-TYPE" 
[1] "hr=" "1.3"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH10 MUTATED      5    7
  CDH10 WILD-TYPE   72   71
        clus
vv       CDH10 MUTATED CDH10 WILD-TYPE
  FEMALE             5              72
  MALE               7              71
D70V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH10 MUTATED      9    3
  CDH10 WILD-TYPE  119   21
                               clus
vv                              CDH10 MUTATED CDH10 WILD-TYPE
  COLON ADENOCARCINOMA                      9             119
  COLON MUCINOUS ADENOCARCINOMA             3              21
D70V5, multiclass
    clus
vv   CDH10 MUTATED CDH10 WILD-TYPE
  T1             0               4
  T2             3              30
  T3             7              96
  T4             2              12
D70V6, multiclass
    clus
vv   CDH10 MUTATED CDH10 WILD-TYPE
  N0             9              82
  N1             2              28
  N2             1              33
D70V7, multiclass
     clus
vv    CDH10 MUTATED CDH10 WILD-TYPE
  M0             10             120
  M1              1              20
  M1A             0               1
D70V8, multiclass
     clus
vv    CDH10 MUTATED CDH10 WILD-TYPE
  I               2              28
  II              6              51
  III             2              42
  IV              1              20

Clustering(71) Variable = CPXCR1 MUTATION ANALYSIS
D71V1, survival
                  sevent
clus2               0  1
  CPXCR1 MUTATED    6  0
  CPXCR1 WILD-TYPE 62 11
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               6               73 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               0               11 
$`CPXCR1 MUTATED`
TCGA-A6-2672 TCGA-AA-3555 TCGA-AA-3842 TCGA-AA-A010 TCGA-AA-A01T TCGA-AA-A01X 
       16.54         0.99         1.02        20.98        33.04        26.01 

$`CPXCR1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        0.99         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01V 
       13.02        38.07         1.02        35.01         1.02        35.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
            0.99             0.92 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
           33.04            51.95 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
           18.76            10.92 
[1] "1.0 - 33.0 (18.8)" "0.9 - 52.0 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
[1] "hr="     "7.8e+07"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      5    1
  CPXCR1 WILD-TYPE   72   77
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  FEMALE              5               72
  MALE                1               77
D71V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      5    1
  CPXCR1 WILD-TYPE  123   23
                               clus
vv                              CPXCR1 MUTATED CPXCR1 WILD-TYPE
  COLON ADENOCARCINOMA                       5              123
  COLON MUCINOUS ADENOCARCINOMA              1               23
D71V5, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  T1              0                4
  T2              2               31
  T3              3              100
  T4              1               13
D71V6, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  N0              2               89
  N1              4               26
  N2              0               34
D71V7, multiclass
     clus
vv    CPXCR1 MUTATED CPXCR1 WILD-TYPE
  M0               6              124
  M1               0               21
  M1A              0                1
D71V8, multiclass
     clus
vv    CPXCR1 MUTATED CPXCR1 WILD-TYPE
  I                0               30
  II               2               55
  III              4               40
  IV               0               21

Clustering(72) Variable = OR2L13 MUTATION ANALYSIS
D72V1, survival
                  sevent
clus2               0  1
  OR2L13 MUTATED    1  0
  OR2L13 WILD-TYPE 67 11
  OR2L13 MUTATED OR2L13 WILD-TYPE 
               1               78 
  OR2L13 MUTATED OR2L13 WILD-TYPE 
               0               11 
$`OR2L13 MUTATED`
TCGA-AA-3710 
        1.02 

$`OR2L13 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  OR2L13 MUTATED OR2L13 WILD-TYPE 
            1.02             0.92 
  OR2L13 MUTATED OR2L13 WILD-TYPE 
            1.02            51.95 
  OR2L13 MUTATED OR2L13 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
[1] "Remove cluster labels:" "OR2L13 MUTATED"        
clus
  OR2L13 MUTATED OR2L13 WILD-TYPE 
               1               78 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3818 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844       TCGA-AA-3846 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877       TCGA-AA-3939 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3952 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977       TCGA-AA-3986 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
D72V2, continuous
D72V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2L13 MUTATED      4    3
  OR2L13 WILD-TYPE   73   75
        clus
vv       OR2L13 MUTATED OR2L13 WILD-TYPE
  FEMALE              4               73
  MALE                3               75
D72V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2L13 MUTATED      6    1
  OR2L13 WILD-TYPE  122   23
                               clus
vv                              OR2L13 MUTATED OR2L13 WILD-TYPE
  COLON ADENOCARCINOMA                       6              122
  COLON MUCINOUS ADENOCARCINOMA              1               23
D72V5, multiclass
    clus
vv   OR2L13 MUTATED OR2L13 WILD-TYPE
  T1              0                4
  T2              1               32
  T3              6               97
  T4              0               14
D72V6, multiclass
    clus
vv   OR2L13 MUTATED OR2L13 WILD-TYPE
  N0              5               86
  N1              1               29
  N2              1               33
D72V7, multiclass
     clus
vv    OR2L13 MUTATED OR2L13 WILD-TYPE
  M0               6              124
  M1               1               20
  M1A              0                1
D72V8, multiclass
     clus
vv    OR2L13 MUTATED OR2L13 WILD-TYPE
  I                1               29
  II               4               53
  III              1               43
  IV               1               20

Clustering(73) Variable = RYR2 MUTATION ANALYSIS
D73V1, survival
                sevent
clus2             0  1
  RYR2 MUTATED   12  3
  RYR2 WILD-TYPE 56  8
  RYR2 MUTATED RYR2 WILD-TYPE 
            15             64 
  RYR2 MUTATED RYR2 WILD-TYPE 
             3              8 
$`RYR2 MUTATED`
TCGA-A6-3807 TCGA-AA-3666 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3949 TCGA-AA-3966 
       10.92         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01K TCGA-AA-A01R TCGA-AA-A01Z 
        1.02         4.01        20.98        13.02        35.01        20.98 
TCGA-AA-A029 TCGA-AA-A02Y TCGA-AY-4070 
       51.95        39.95        16.31 

$`RYR2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       12.00        38.07         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       26.01        39.06        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4071 
       40.96        18.02        40.93         0.95 

  RYR2 MUTATED RYR2 WILD-TYPE 
          0.99           0.92 
  RYR2 MUTATED RYR2 WILD-TYPE 
         51.95          40.96 
  RYR2 MUTATED RYR2 WILD-TYPE 
         10.92          12.00 
[1] "1.0 - 52.0 (10.9)" "0.9 - 41.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RYR2 WILD-TYPE"   "RYR2 MUTATED"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RYR2 WILD-TYPE"   "RYR2 MUTATED"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RYR2 WILD-TYPE"   "RYR2 MUTATED"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE"   "RYR2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "RYR2 MUTATED" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" "RYR2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RYR2 WILD-TYPE" "RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"RYR2 WILD-TYPE"   "RYR2 MUTATED" "RYR2 WILD-TYPE" 
[1] "hr=" "1.3"
D73V2, continuous
D73V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RYR2 MUTATED     12   10
  RYR2 WILD-TYPE   65   68
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  FEMALE           12             65
  MALE             10             68
D73V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RYR2 MUTATED     18    4
  RYR2 WILD-TYPE  110   20
                               clus
vv                              RYR2 MUTATED RYR2 WILD-TYPE
  COLON ADENOCARCINOMA                    18            110
  COLON MUCINOUS ADENOCARCINOMA            4             20
D73V5, multiclass
    clus
vv   RYR2 MUTATED RYR2 WILD-TYPE
  T1            0              4
  T2            2             31
  T3           17             86
  T4            3             11
D73V6, multiclass
    clus
vv   RYR2 MUTATED RYR2 WILD-TYPE
  N0           12             79
  N1            5             25
  N2            5             29
D73V7, multiclass
     clus
vv    RYR2 MUTATED RYR2 WILD-TYPE
  M0            19            111
  M1             2             19
  M1A            0              1
D73V8, multiclass
     clus
vv    RYR2 MUTATED RYR2 WILD-TYPE
  I              1             29
  II            10             47
  III            8             36
  IV             2             19

Clustering(74) Variable = SCN7A MUTATION ANALYSIS
D74V1, survival
                 sevent
clus2              0  1
  SCN7A MUTATED    6  1
  SCN7A WILD-TYPE 62 10
  SCN7A MUTATED SCN7A WILD-TYPE 
              7              72 
  SCN7A MUTATED SCN7A WILD-TYPE 
              1              10 
$`SCN7A MUTATED`
TCGA-A6-3810 TCGA-AA-3811 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00N 
        8.09         0.99         0.99         1.02         1.02         4.01 
TCGA-AA-A010 
       20.98 

$`SCN7A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  SCN7A MUTATED SCN7A WILD-TYPE 
           0.99            0.92 
  SCN7A MUTATED SCN7A WILD-TYPE 
          20.98           51.95 
  SCN7A MUTATED SCN7A WILD-TYPE 
           1.02           13.02 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
[1] "hr=" "1.7"
D74V2, continuous
D74V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCN7A MUTATED      7    5
  SCN7A WILD-TYPE   70   73
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  FEMALE             7              70
  MALE               5              73
D74V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCN7A MUTATED      8    3
  SCN7A WILD-TYPE  120   21
                               clus
vv                              SCN7A MUTATED SCN7A WILD-TYPE
  COLON ADENOCARCINOMA                      8             120
  COLON MUCINOUS ADENOCARCINOMA             3              21
D74V5, multiclass
    clus
vv   SCN7A MUTATED SCN7A WILD-TYPE
  T1             0               4
  T2             1              32
  T3             7              96
  T4             4              10
D74V6, multiclass
    clus
vv   SCN7A MUTATED SCN7A WILD-TYPE
  N0            10              81
  N1             0              30
  N2             2              32
D74V7, multiclass
     clus
vv    SCN7A MUTATED SCN7A WILD-TYPE
  M0             10             120
  M1              1              20
  M1A             0               1
D74V8, multiclass
     clus
vv    SCN7A MUTATED SCN7A WILD-TYPE
  I               0              30
  II              9              48
  III             1              43
  IV              1              20

Clustering(75) Variable = USP17L2 MUTATION ANALYSIS
D75V1, survival
                   sevent
clus2                0  1
  USP17L2 MUTATED    6  0
  USP17L2 WILD-TYPE 62 11
  USP17L2 MUTATED USP17L2 WILD-TYPE 
                6                73 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
                0                11 
$`USP17L2 MUTATED`
TCGA-A6-3808 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3975 TCGA-AA-A010 TCGA-AA-A02W 
        9.14         1.02         0.99         0.99        20.98        40.96 

$`USP17L2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  USP17L2 MUTATED USP17L2 WILD-TYPE 
             0.99              0.92 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
            40.96             51.95 
  USP17L2 MUTATED USP17L2 WILD-TYPE 
             5.08             12.00 
[1] "1.0 - 41.0 (5.1)"  "0.9 - 52.0 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"USP17L2 WILD-TYPE"   "USP17L2 MUTATED" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" "USP17L2 WILD-TYPE" 
[1] "hr="     "7.8e+07"
D75V2, continuous
D75V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  USP17L2 MUTATED      3    4
  USP17L2 WILD-TYPE   74   74
        clus
vv       USP17L2 MUTATED USP17L2 WILD-TYPE
  FEMALE               3                74
  MALE                 4                74
D75V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  USP17L2 MUTATED      6    1
  USP17L2 WILD-TYPE  122   23
                               clus
vv                              USP17L2 MUTATED USP17L2 WILD-TYPE
  COLON ADENOCARCINOMA                        6               122
  COLON MUCINOUS ADENOCARCINOMA               1                23
D75V5, multiclass
    clus
vv   USP17L2 MUTATED USP17L2 WILD-TYPE
  T1               0                 4
  T2               2                31
  T3               4                99
  T4               1                13
D75V6, multiclass
    clus
vv   USP17L2 MUTATED USP17L2 WILD-TYPE
  N0               7                84
  N1               0                30
  N2               0                34
D75V7, multiclass
     clus
vv    USP17L2 MUTATED USP17L2 WILD-TYPE
  M0                7               123
  M1                0                21
  M1A               0                 1
D75V8, multiclass
     clus
vv    USP17L2 MUTATED USP17L2 WILD-TYPE
  I                 2                28
  II                5                52
  III               0                44
  IV                0                21

Clustering(76) Variable = NAALAD2 MUTATION ANALYSIS
D76V1, survival
                   sevent
clus2                0  1
  NAALAD2 MUTATED    5  1
  NAALAD2 WILD-TYPE 63 10
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
                6                73 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
                1                10 
$`NAALAD2 MUTATED`
TCGA-A6-2676 TCGA-AA-3555 TCGA-AA-A00A TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A010 
       14.70         0.99        18.02        18.02         4.01        20.98 

$`NAALAD2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       19.00        30.02        34.03        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
             0.99              0.92 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
            20.98             51.95 
  NAALAD2 MUTATED NAALAD2 WILD-TYPE 
            16.36             10.92 
[1] "1.0 - 21.0 (16.4)" "0.9 - 52.0 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"NAALAD2 WILD-TYPE"   "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "NAALAD2 MUTATED" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" "NAALAD2 WILD-TYPE" 
[1] "hr=" "1.2"
D76V2, continuous
D76V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NAALAD2 MUTATED      8    3
  NAALAD2 WILD-TYPE   69   75
        clus
vv       NAALAD2 MUTATED NAALAD2 WILD-TYPE
  FEMALE               8                69
  MALE                 3                75
D76V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  NAALAD2 MUTATED      6    5
  NAALAD2 WILD-TYPE  122   19
                               clus
vv                              NAALAD2 MUTATED NAALAD2 WILD-TYPE
  COLON ADENOCARCINOMA                        6               122
  COLON MUCINOUS ADENOCARCINOMA               5                19
D76V5, multiclass
    clus
vv   NAALAD2 MUTATED NAALAD2 WILD-TYPE
  T1               1                 3
  T2               1                32
  T3               4                99
  T4               4                10
D76V6, multiclass
    clus
vv   NAALAD2 MUTATED NAALAD2 WILD-TYPE
  N0               9                82
  N1               2                28
  N2               0                34
D76V7, multiclass
     clus
vv    NAALAD2 MUTATED NAALAD2 WILD-TYPE
  M0               10               120
  M1                1                20
  M1A               0                 1
D76V8, multiclass
     clus
vv    NAALAD2 MUTATED NAALAD2 WILD-TYPE
  I                 2                28
  II                7                50
  III               1                43
  IV                1                20

Clustering(77) Variable = ERBB4 MUTATION ANALYSIS
D77V1, survival
                 sevent
clus2              0  1
  ERBB4 MUTATED    5  3
  ERBB4 WILD-TYPE 63  8
  ERBB4 MUTATED ERBB4 WILD-TYPE 
              8              71 
  ERBB4 MUTATED ERBB4 WILD-TYPE 
              3               8 
$`ERBB4 MUTATED`
TCGA-A6-2672 TCGA-AA-3818 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A010 
       16.54         0.99         0.99         1.02         4.01        20.98 
TCGA-AA-A01Q TCGA-AY-4071 
        1.02         0.95 

$`ERBB4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
       40.96        39.95        18.02        40.93        16.31 

  ERBB4 MUTATED ERBB4 WILD-TYPE 
           0.95            0.92 
  ERBB4 MUTATED ERBB4 WILD-TYPE 
          20.98           51.95 
  ERBB4 MUTATED ERBB4 WILD-TYPE 
           1.02           13.02 
[1] "0.9 - 21.0 (1.0)"  "0.9 - 52.0 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ERBB4 WILD-TYPE"   "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
  "ERBB4 MUTATED" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ERBB4 WILD-TYPE" "ERBB4 WILD-TYPE"   "ERBB4 MUTATED" 
[1] "hr=" "6.5"
D77V2, continuous
D77V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB4 MUTATED     10    4
  ERBB4 WILD-TYPE   67   74
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  FEMALE            10              67
  MALE               4              74
D77V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ERBB4 MUTATED     10    3
  ERBB4 WILD-TYPE  118   21
                               clus
vv                              ERBB4 MUTATED ERBB4 WILD-TYPE
  COLON ADENOCARCINOMA                     10             118
  COLON MUCINOUS ADENOCARCINOMA             3              21
D77V5, multiclass
    clus
vv   ERBB4 MUTATED ERBB4 WILD-TYPE
  T1             2               2
  T2             1              32
  T3             8              95
  T4             3              11
D77V6, multiclass
    clus
vv   ERBB4 MUTATED ERBB4 WILD-TYPE
  N0            12              79
  N1             2              28
  N2             0              34
D77V7, multiclass
     clus
vv    ERBB4 MUTATED ERBB4 WILD-TYPE
  M0             13             117
  M1              0              21
  M1A             0               1
D77V8, multiclass
     clus
vv    ERBB4 MUTATED ERBB4 WILD-TYPE
  I               3              27
  II              9              48
  III             2              42
  IV              0              21

Clustering(78) Variable = GPHN MUTATION ANALYSIS
D78V1, survival
                sevent
clus2             0  1
  GPHN MUTATED    8  1
  GPHN WILD-TYPE 60 10
  GPHN MUTATED GPHN WILD-TYPE 
             9             70 
  GPHN MUTATED GPHN WILD-TYPE 
             1             10 
$`GPHN MUTATED`
TCGA-A6-2676 TCGA-AA-3518 TCGA-AA-3877 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A01I 
       14.70         1.02         0.99         1.02         1.02        12.00 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AY-4071 
        1.02        35.01         0.95 

$`GPHN WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
       10.92         9.14         8.09         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 
       27.02         0.99        17.00        14.99        21.99        20.98 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P 
       15.02         0.99        13.02        12.00        13.02        38.07 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
       39.95        18.02        40.93        16.31 

  GPHN MUTATED GPHN WILD-TYPE 
          0.95           0.92 
  GPHN MUTATED GPHN WILD-TYPE 
         35.01          51.95 
  GPHN MUTATED GPHN WILD-TYPE 
          1.02          13.02 
[1] "0.9 - 35.0 (1.0)"  "0.9 - 52.0 (13.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "GPHN MUTATED"   "GPHN MUTATED" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "GPHN MUTATED"   "GPHN MUTATED" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE"   "GPHN MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GPHN WILD-TYPE"   "GPHN MUTATED" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "GPHN MUTATED"   "GPHN MUTATED" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" "GPHN WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"GPHN WILD-TYPE" "GPHN WILD-TYPE"   "GPHN MUTATED" 
[1] "hr=" "1.4"
D78V2, continuous
D78V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPHN MUTATED      7    4
  GPHN WILD-TYPE   70   74
        clus
vv       GPHN MUTATED GPHN WILD-TYPE
  FEMALE            7             70
  MALE              4             74
D78V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPHN MUTATED      6    4
  GPHN WILD-TYPE  122   20
                               clus
vv                              GPHN MUTATED GPHN WILD-TYPE
  COLON ADENOCARCINOMA                     6            122
  COLON MUCINOUS ADENOCARCINOMA            4             20
D78V5, multiclass
    clus
vv   GPHN MUTATED GPHN WILD-TYPE
  T1            2              2
  T2            2             31
  T3            6             97
  T4            0             14
D78V6, multiclass
    clus
vv   GPHN MUTATED GPHN WILD-TYPE
  N0           10             81
  N1            0             30
  N2            1             33
D78V7, multiclass
     clus
vv    GPHN MUTATED GPHN WILD-TYPE
  M0             9            121
  M1             0             21
  M1A            0              1
D78V8, multiclass
     clus
vv    GPHN MUTATED GPHN WILD-TYPE
  I              3             27
  II             6             51
  III            1             43
  IV             0             21

Clustering(79) Variable = LRRN3 MUTATION ANALYSIS
D79V1, survival
                 sevent
clus2              0  1
  LRRN3 MUTATED    6  1
  LRRN3 WILD-TYPE 62 10
  LRRN3 MUTATED LRRN3 WILD-TYPE 
              7              72 
  LRRN3 MUTATED LRRN3 WILD-TYPE 
              1              10 
$`LRRN3 MUTATED`
TCGA-A6-3807 TCGA-AA-3715 TCGA-AA-3941 TCGA-AA-A00E TCGA-AA-A00R TCGA-AA-A01P 
       10.92         0.99         1.02        30.02         0.99        38.07 
TCGA-AA-A01R 
       35.01 

$`LRRN3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 
       27.02        27.02        17.00        14.99        21.99        20.98 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  LRRN3 MUTATED LRRN3 WILD-TYPE 
           0.99            0.92 
  LRRN3 MUTATED LRRN3 WILD-TYPE 
          38.07           51.95 
  LRRN3 MUTATED LRRN3 WILD-TYPE 
          10.92           12.00 
[1] "1.0 - 38.1 (10.9)" "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE"   "LRRN3 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LRRN3 WILD-TYPE"   "LRRN3 MUTATED" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" "LRRN3 WILD-TYPE" 
[1] "hr=" "1"  
D79V2, continuous
D79V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRRN3 MUTATED      5    4
  LRRN3 WILD-TYPE   72   74
        clus
vv       LRRN3 MUTATED LRRN3 WILD-TYPE
  FEMALE             5              72
  MALE               4              74
D79V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LRRN3 MUTATED      8    1
  LRRN3 WILD-TYPE  120   23
                               clus
vv                              LRRN3 MUTATED LRRN3 WILD-TYPE
  COLON ADENOCARCINOMA                      8             120
  COLON MUCINOUS ADENOCARCINOMA             1              23
D79V5, multiclass
    clus
vv   LRRN3 MUTATED LRRN3 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             6              97
  T4             2              12
D79V6, multiclass
    clus
vv   LRRN3 MUTATED LRRN3 WILD-TYPE
  N0             3              88
  N1             3              27
  N2             3              31
D79V7, multiclass
     clus
vv    LRRN3 MUTATED LRRN3 WILD-TYPE
  M0              7             123
  M1              1              20
  M1A             1               0
D79V8, multiclass
     clus
vv    LRRN3 MUTATED LRRN3 WILD-TYPE
  I               1              29
  II              2              55
  III             4              40
  IV              2              19

Clustering(80) Variable = PCDHB5 MUTATION ANALYSIS
D80V1, survival
                  sevent
clus2               0  1
  PCDHB5 MUTATED    3  2
  PCDHB5 WILD-TYPE 65  9
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
               5               74 
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
               2                9 
$`PCDHB5 MUTATED`
TCGA-AA-3818 TCGA-AA-3947 TCGA-AA-A00A TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99        18.02         4.01        20.98 

$`PCDHB5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
            0.99             0.92 
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
           20.98            51.95 
  PCDHB5 MUTATED PCDHB5 WILD-TYPE 
            4.01            12.00 
[1] "1.0 - 21.0 (4.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDHB5 WILD-TYPE"   "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDHB5 MUTATED" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" "PCDHB5 WILD-TYPE" 
[1] "hr=" "4.3"
D80V2, continuous
D80V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB5 MUTATED      9    3
  PCDHB5 WILD-TYPE   68   75
        clus
vv       PCDHB5 MUTATED PCDHB5 WILD-TYPE
  FEMALE              9               68
  MALE                3               75
D80V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDHB5 MUTATED     10    2
  PCDHB5 WILD-TYPE  118   22
                               clus
vv                              PCDHB5 MUTATED PCDHB5 WILD-TYPE
  COLON ADENOCARCINOMA                      10              118
  COLON MUCINOUS ADENOCARCINOMA              2               22
D80V5, multiclass
    clus
vv   PCDHB5 MUTATED PCDHB5 WILD-TYPE
  T1              0                4
  T2              1               32
  T3              8               95
  T4              3               11
D80V6, multiclass
    clus
vv   PCDHB5 MUTATED PCDHB5 WILD-TYPE
  N0              9               82
  N1              2               28
  N2              1               33
D80V7, multiclass
     clus
vv    PCDHB5 MUTATED PCDHB5 WILD-TYPE
  M0              11              119
  M1               1               20
  M1A              0                1
D80V8, multiclass
     clus
vv    PCDHB5 MUTATED PCDHB5 WILD-TYPE
  I                0               30
  II               9               48
  III              2               42
  IV               1               20

Clustering(81) Variable = MIER3 MUTATION ANALYSIS
D81V1, survival
                 sevent
clus2              0  1
  MIER3 MUTATED    6  0
  MIER3 WILD-TYPE 62 11
  MIER3 MUTATED MIER3 WILD-TYPE 
              6              73 
  MIER3 MUTATED MIER3 WILD-TYPE 
              0              11 
$`MIER3 MUTATED`
TCGA-A6-2672 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A010 
       16.54         0.99         0.99         0.99         1.02        20.98 

$`MIER3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3562 TCGA-AA-3666 
       10.92         9.14         8.09         1.02         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  MIER3 MUTATED MIER3 WILD-TYPE 
           0.99            0.92 
  MIER3 MUTATED MIER3 WILD-TYPE 
          20.98           51.95 
  MIER3 MUTATED MIER3 WILD-TYPE 
          1.005          12.000 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" "MIER3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE"   "MIER3 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MIER3 MUTATED" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"MIER3 WILD-TYPE" "MIER3 WILD-TYPE" "MIER3 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D81V2, continuous
D81V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MIER3 MUTATED      6    4
  MIER3 WILD-TYPE   71   74
        clus
vv       MIER3 MUTATED MIER3 WILD-TYPE
  FEMALE             6              71
  MALE               4              74
D81V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MIER3 MUTATED      9    1
  MIER3 WILD-TYPE  119   23
                               clus
vv                              MIER3 MUTATED MIER3 WILD-TYPE
  COLON ADENOCARCINOMA                      9             119
  COLON MUCINOUS ADENOCARCINOMA             1              23
D81V5, multiclass
    clus
vv   MIER3 MUTATED MIER3 WILD-TYPE
  T1             0               4
  T2             2              31
  T3             6              97
  T4             2              12
D81V6, multiclass
    clus
vv   MIER3 MUTATED MIER3 WILD-TYPE
  N0             8              83
  N1             2              28
  N2             0              34
D81V7, multiclass
     clus
vv    MIER3 MUTATED MIER3 WILD-TYPE
  M0              9             121
  M1              0              21
  M1A             0               1
D81V8, multiclass
     clus
vv    MIER3 MUTATED MIER3 WILD-TYPE
  I               1              29
  II              6              51
  III             2              42
  IV              0              21

Clustering(82) Variable = RIMS1 MUTATION ANALYSIS
D82V1, survival
                 sevent
clus2              0  1
  RIMS1 MUTATED    5  1
  RIMS1 WILD-TYPE 63 10
  RIMS1 MUTATED RIMS1 WILD-TYPE 
              6              73 
  RIMS1 MUTATED RIMS1 WILD-TYPE 
              1              10 
$`RIMS1 MUTATED`
TCGA-AA-3715 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A010 TCGA-AA-A01P TCGA-AA-A01R 
        0.99         1.02         1.02        20.98        38.07        35.01 

$`RIMS1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       13.02         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  RIMS1 MUTATED RIMS1 WILD-TYPE 
           0.99            0.92 
  RIMS1 MUTATED RIMS1 WILD-TYPE 
          38.07           51.95 
  RIMS1 MUTATED RIMS1 WILD-TYPE 
             11              12 
[1] "1.0 - 38.1 (11.0)" "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE"   "RIMS1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS1 WILD-TYPE"   "RIMS1 MUTATED" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" "RIMS1 WILD-TYPE" 
[1] "hr=" "1.1"
D82V2, continuous
D82V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS1 MUTATED      6    6
  RIMS1 WILD-TYPE   71   72
        clus
vv       RIMS1 MUTATED RIMS1 WILD-TYPE
  FEMALE             6              71
  MALE               6              72
D82V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS1 MUTATED      9    3
  RIMS1 WILD-TYPE  119   21
                               clus
vv                              RIMS1 MUTATED RIMS1 WILD-TYPE
  COLON ADENOCARCINOMA                      9             119
  COLON MUCINOUS ADENOCARCINOMA             3              21
D82V5, multiclass
    clus
vv   RIMS1 MUTATED RIMS1 WILD-TYPE
  T1             0               4
  T2             3              30
  T3             7              96
  T4             2              12
D82V6, multiclass
    clus
vv   RIMS1 MUTATED RIMS1 WILD-TYPE
  N0            10              81
  N1             1              29
  N2             1              33
D82V7, multiclass
     clus
vv    RIMS1 MUTATED RIMS1 WILD-TYPE
  M0             11             119
  M1              0              21
  M1A             0               1
D82V8, multiclass
     clus
vv    RIMS1 MUTATED RIMS1 WILD-TYPE
  I               2              28
  II              7              50
  III             2              42
  IV              0              21

Clustering(83) Variable = GUCY1A3 MUTATION ANALYSIS
D83V1, survival
                   sevent
clus2                0  1
  GUCY1A3 MUTATED    6  2
  GUCY1A3 WILD-TYPE 62  9
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
                8                71 
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
                2                 9 
$`GUCY1A3 MUTATED`
TCGA-AA-3666 TCGA-AA-3811 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        1.02         0.99         0.99         1.02         4.01        20.98 
TCGA-AA-A01D TCGA-AA-A01R 
        0.99        35.01 

$`GUCY1A3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
             0.99              0.92 
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
            35.01             51.95 
  GUCY1A3 MUTATED GUCY1A3 WILD-TYPE 
             1.02             13.02 
[1] "1.0 - 35.0 (1.0)"  "0.9 - 52.0 (13.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GUCY1A3 WILD-TYPE"   "GUCY1A3 MUTATED" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" "GUCY1A3 WILD-TYPE" 
[1] "hr=" "3.4"
D83V2, continuous
D83V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GUCY1A3 MUTATED      5    5
  GUCY1A3 WILD-TYPE   72   73
        clus
vv       GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  FEMALE               5                72
  MALE                 5                73
D83V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GUCY1A3 MUTATED      6    4
  GUCY1A3 WILD-TYPE  122   20
                               clus
vv                              GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  COLON ADENOCARCINOMA                        6               122
  COLON MUCINOUS ADENOCARCINOMA               4                20
D83V5, multiclass
    clus
vv   GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  T1               0                 4
  T2               1                32
  T3               6                97
  T4               3                11
D83V6, multiclass
    clus
vv   GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  N0               6                85
  N1               1                29
  N2               3                31
D83V7, multiclass
     clus
vv    GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  M0                9               121
  M1                0                21
  M1A               0                 1
D83V8, multiclass
     clus
vv    GUCY1A3 MUTATED GUCY1A3 WILD-TYPE
  I                 0                30
  II                5                52
  III               4                40
  IV                0                21

Clustering(84) Variable = PCDH10 MUTATION ANALYSIS
D84V1, survival
                  sevent
clus2               0  1
  PCDH10 MUTATED   11  0
  PCDH10 WILD-TYPE 57 11
  PCDH10 MUTATED PCDH10 WILD-TYPE 
              11               68 
  PCDH10 MUTATED PCDH10 WILD-TYPE 
               0               11 
$`PCDH10 MUTATED`
TCGA-A6-2672 TCGA-A6-2676 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3846 TCGA-AA-3949 
       16.54        14.70         1.02         0.99         0.99         0.99 
TCGA-AA-A00J TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01K TCGA-AA-A01V 
       18.02        20.98        15.02        13.02        35.01 

$`PCDH10 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 TCGA-A6-3807 
       13.91        17.19        17.79        14.37        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        1.02         0.92         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        1.02         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       17.00        14.99        21.99         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  PCDH10 MUTATED PCDH10 WILD-TYPE 
            0.99             0.92 
  PCDH10 MUTATED PCDH10 WILD-TYPE 
           35.01            51.95 
  PCDH10 MUTATED PCDH10 WILD-TYPE 
           14.70            10.03 
[1] "1.0 - 35.0 (14.7)" "0.9 - 52.0 (10.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH10 WILD-TYPE"   "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH10 MUTATED"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE"   "PCDH10 MUTATED" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "PCDH10 MUTATED" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" "PCDH10 WILD-TYPE" 
[1] "hr="     "8.4e+07"
D84V2, continuous
D84V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH10 MUTATED     10    4
  PCDH10 WILD-TYPE   67   74
        clus
vv       PCDH10 MUTATED PCDH10 WILD-TYPE
  FEMALE             10               67
  MALE                4               74
D84V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH10 MUTATED     10    4
  PCDH10 WILD-TYPE  118   20
                               clus
vv                              PCDH10 MUTATED PCDH10 WILD-TYPE
  COLON ADENOCARCINOMA                      10              118
  COLON MUCINOUS ADENOCARCINOMA              4               20
D84V5, multiclass
    clus
vv   PCDH10 MUTATED PCDH10 WILD-TYPE
  T1              0                4
  T2              1               32
  T3             10               93
  T4              2               12
D84V6, multiclass
    clus
vv   PCDH10 MUTATED PCDH10 WILD-TYPE
  N0              7               84
  N1              4               26
  N2              3               31
D84V7, multiclass
     clus
vv    PCDH10 MUTATED PCDH10 WILD-TYPE
  M0              13              117
  M1               1               20
  M1A              0                1
D84V8, multiclass
     clus
vv    PCDH10 MUTATED PCDH10 WILD-TYPE
  I                1               29
  II               6               51
  III              6               38
  IV               1               20

Clustering(85) Variable = PCDH11X MUTATION ANALYSIS
D85V1, survival
                   sevent
clus2                0  1
  PCDH11X MUTATED    6  3
  PCDH11X WILD-TYPE 62  8
  PCDH11X MUTATED PCDH11X WILD-TYPE 
                9                70 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
                3                 8 
$`PCDH11X MUTATED`
TCGA-A6-3810 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-3952 TCGA-AA-3977 
        8.09         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A03F 
        4.01        20.98        18.02 

$`PCDH11X WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        40.93        16.31         0.95 

  PCDH11X MUTATED PCDH11X WILD-TYPE 
             0.99              0.92 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
            20.98             51.95 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
             1.02             13.02 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (13.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
[1] "hr=" "5"  
D85V2, continuous
D85V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDH11X MUTATED      5    6
  PCDH11X WILD-TYPE   72   72
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  FEMALE               5                72
  MALE                 6                72
D85V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDH11X MUTATED      8    3
  PCDH11X WILD-TYPE  120   21
                               clus
vv                              PCDH11X MUTATED PCDH11X WILD-TYPE
  COLON ADENOCARCINOMA                        8               120
  COLON MUCINOUS ADENOCARCINOMA               3                21
D85V5, multiclass
    clus
vv   PCDH11X MUTATED PCDH11X WILD-TYPE
  T1               1                 3
  T2               1                32
  T3               7                96
  T4               2                12
D85V6, multiclass
    clus
vv   PCDH11X MUTATED PCDH11X WILD-TYPE
  N0               9                82
  N1               0                30
  N2               2                32
D85V7, multiclass
     clus
vv    PCDH11X MUTATED PCDH11X WILD-TYPE
  M0               10               120
  M1                0                21
  M1A               0                 1
D85V8, multiclass
     clus
vv    PCDH11X MUTATED PCDH11X WILD-TYPE
  I                 1                29
  II                7                50
  III               2                42
  IV                0                21

Clustering(86) Variable = GML MUTATION ANALYSIS
D86V1, survival
               sevent
clus2            0  1
  GML MUTATED    3  1
  GML WILD-TYPE 65 10
  GML MUTATED GML WILD-TYPE 
            4            75 
  GML MUTATED GML WILD-TYPE 
            1            10 
$`GML MUTATED`
TCGA-AA-3666 TCGA-AA-3715 TCGA-AA-3949 TCGA-AA-3977 
        1.02         0.99         0.99         1.02 

$`GML WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  GML MUTATED GML WILD-TYPE 
         0.99          0.92 
  GML MUTATED GML WILD-TYPE 
         1.02         51.95 
  GML MUTATED GML WILD-TYPE 
        1.005        13.020 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 52.0 (13.0)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"GML WILD-TYPE"   "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "GML MUTATED" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" "GML WILD-TYPE" 
[1] "hr=" "7.9"
D86V2, continuous
D86V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  GML MUTATED      1    4
  GML WILD-TYPE   76   74
        clus
vv       GML MUTATED GML WILD-TYPE
  FEMALE           1            76
  MALE             4            74
D86V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  GML MUTATED      4    1
  GML WILD-TYPE  124   23
                               clus
vv                              GML MUTATED GML WILD-TYPE
  COLON ADENOCARCINOMA                    4           124
  COLON MUCINOUS ADENOCARCINOMA           1            23
D86V5, multiclass
    clus
vv   GML MUTATED GML WILD-TYPE
  T1           0             4
  T2           1            32
  T3           4            99
  T4           0            14
D86V6, multiclass
    clus
vv   GML MUTATED GML WILD-TYPE
  N0           2            89
  N1           2            28
  N2           1            33
D86V7, multiclass
     clus
vv    GML MUTATED GML WILD-TYPE
  M0            3           127
  M1            1            20
  M1A           0             1
D86V8, multiclass
     clus
vv    GML MUTATED GML WILD-TYPE
  I             0            30
  II            1            56
  III           2            42
  IV            1            20

Clustering(87) Variable = OR4A15 MUTATION ANALYSIS
D87V1, survival
                  sevent
clus2               0  1
  OR4A15 MUTATED    3  1
  OR4A15 WILD-TYPE 65 10
  OR4A15 MUTATED OR4A15 WILD-TYPE 
               4               75 
  OR4A15 MUTATED OR4A15 WILD-TYPE 
               1               10 
$`OR4A15 MUTATED`
TCGA-A6-3808 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01I 
        9.14         4.01        20.98        12.00 

$`OR4A15 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  OR4A15 MUTATED OR4A15 WILD-TYPE 
            4.01             0.92 
  OR4A15 MUTATED OR4A15 WILD-TYPE 
           20.98            51.95 
  OR4A15 MUTATED OR4A15 WILD-TYPE 
           10.57            12.00 
[1] "4.0 - 21.0 (10.6)" "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR4A15 WILD-TYPE"   "OR4A15 MUTATED" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" "OR4A15 WILD-TYPE" 
[1] "hr=" "1.9"
D87V2, continuous
D87V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4A15 MUTATED      1    5
  OR4A15 WILD-TYPE   76   73
        clus
vv       OR4A15 MUTATED OR4A15 WILD-TYPE
  FEMALE              1               76
  MALE                5               73
D87V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4A15 MUTATED      4    2
  OR4A15 WILD-TYPE  124   22
                               clus
vv                              OR4A15 MUTATED OR4A15 WILD-TYPE
  COLON ADENOCARCINOMA                       4              124
  COLON MUCINOUS ADENOCARCINOMA              2               22
D87V5, multiclass
    clus
vv   OR4A15 MUTATED OR4A15 WILD-TYPE
  T1              0                4
  T2              3               30
  T3              1              102
  T4              2               12
D87V6, multiclass
    clus
vv   OR4A15 MUTATED OR4A15 WILD-TYPE
  N0              5               86
  N1              1               29
  N2              0               34
D87V7, multiclass
     clus
vv    OR4A15 MUTATED OR4A15 WILD-TYPE
  M0               6              124
  M1               0               21
  M1A              0                1
D87V8, multiclass
     clus
vv    OR4A15 MUTATED OR4A15 WILD-TYPE
  I                2               28
  II               3               54
  III              1               43
  IV               0               21

Clustering(88) Variable = ANK2 MUTATION ANALYSIS
D88V1, survival
                sevent
clus2             0  1
  ANK2 MUTATED    9  3
  ANK2 WILD-TYPE 59  8
  ANK2 MUTATED ANK2 WILD-TYPE 
            12             67 
  ANK2 MUTATED ANK2 WILD-TYPE 
             3              8 
$`ANK2 MUTATED`
TCGA-A6-2676 TCGA-A6-3807 TCGA-AA-3518 TCGA-AA-3877 TCGA-AA-3977 TCGA-AA-A00N 
       14.70        10.92         1.02         0.99         1.02         4.01 
TCGA-AA-A010 TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01T TCGA-AA-A02H TCGA-AA-A02O 
       20.98        38.07         1.02        33.04         2.01         0.92 

$`ANK2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 
        9.14         8.09         0.99         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01R TCGA-AA-A01S 
       13.02        12.00        12.00        13.02        35.01         1.02 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  ANK2 MUTATED ANK2 WILD-TYPE 
          0.92           0.92 
  ANK2 MUTATED ANK2 WILD-TYPE 
         38.07          51.95 
  ANK2 MUTATED ANK2 WILD-TYPE 
          3.01          13.02 
[1] "0.9 - 38.1 (3.0)"  "0.9 - 52.0 (13.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE"   "ANK2 MUTATED" "ANK2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "ANK2 MUTATED" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"ANK2 WILD-TYPE" "ANK2 WILD-TYPE" "ANK2 WILD-TYPE" 
[1] "hr=" "2.6"
D88V2, continuous
D88V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ANK2 MUTATED     16    8
  ANK2 WILD-TYPE   61   70
        clus
vv       ANK2 MUTATED ANK2 WILD-TYPE
  FEMALE           16             61
  MALE              8             70
D88V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ANK2 MUTATED     18    6
  ANK2 WILD-TYPE  110   18
                               clus
vv                              ANK2 MUTATED ANK2 WILD-TYPE
  COLON ADENOCARCINOMA                    18            110
  COLON MUCINOUS ADENOCARCINOMA            6             18
D88V5, multiclass
    clus
vv   ANK2 MUTATED ANK2 WILD-TYPE
  T1            1              3
  T2            2             31
  T3           16             87
  T4            4             10
D88V6, multiclass
    clus
vv   ANK2 MUTATED ANK2 WILD-TYPE
  N0           14             77
  N1            5             25
  N2            5             29
D88V7, multiclass
     clus
vv    ANK2 MUTATED ANK2 WILD-TYPE
  M0            20            110
  M1             3             18
  M1A            0              1
D88V8, multiclass
     clus
vv    ANK2 MUTATED ANK2 WILD-TYPE
  I              2             28
  II            11             46
  III            7             37
  IV             3             18

Clustering(89) Variable = FAM5C MUTATION ANALYSIS
D89V1, survival
                 sevent
clus2              0  1
  FAM5C MUTATED    4  3
  FAM5C WILD-TYPE 64  8
  FAM5C MUTATED FAM5C WILD-TYPE 
              7              72 
  FAM5C MUTATED FAM5C WILD-TYPE 
              3               8 
$`FAM5C MUTATED`
TCGA-AA-3818 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99         1.02         1.02         4.01        20.98 
TCGA-AA-A01P 
       38.07 

$`FAM5C WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q 
        0.99        13.02        12.00        12.00        13.02         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  FAM5C MUTATED FAM5C WILD-TYPE 
           0.99            0.92 
  FAM5C MUTATED FAM5C WILD-TYPE 
          38.07           51.95 
  FAM5C MUTATED FAM5C WILD-TYPE 
           1.02           12.51 
[1] "1.0 - 38.1 (1.0)"  "0.9 - 52.0 (12.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
[1] "hr=" "4.8"
D89V2, continuous
D89V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5C MUTATED      7    3
  FAM5C WILD-TYPE   70   75
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  FEMALE             7              70
  MALE               3              75
D89V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5C MUTATED      7    3
  FAM5C WILD-TYPE  121   21
                               clus
vv                              FAM5C MUTATED FAM5C WILD-TYPE
  COLON ADENOCARCINOMA                      7             121
  COLON MUCINOUS ADENOCARCINOMA             3              21
D89V5, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  T1             0               4
  T2             2              31
  T3             5              98
  T4             3              11
D89V6, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  N0             9              82
  N1             1              29
  N2             0              34
D89V7, multiclass
     clus
vv    FAM5C MUTATED FAM5C WILD-TYPE
  M0              9             121
  M1              0              21
  M1A             0               1
D89V8, multiclass
     clus
vv    FAM5C MUTATED FAM5C WILD-TYPE
  I               1              29
  II              7              50
  III             1              43
  IV              0              21

Clustering(90) Variable = MARCO MUTATION ANALYSIS
D90V1, survival
                 sevent
clus2              0  1
  MARCO MUTATED    3  1
  MARCO WILD-TYPE 65 10
  MARCO MUTATED MARCO WILD-TYPE 
              4              75 
  MARCO MUTATED MARCO WILD-TYPE 
              1              10 
$`MARCO MUTATED`
TCGA-AA-3555 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01I 
        0.99         4.01        20.98        12.00 

$`MARCO WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  MARCO MUTATED MARCO WILD-TYPE 
           0.99            0.92 
  MARCO MUTATED MARCO WILD-TYPE 
          20.98           51.95 
  MARCO MUTATED MARCO WILD-TYPE 
          8.005          12.000 
[1] "1.0 - 21.0 (8.0)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MARCO WILD-TYPE"   "MARCO MUTATED" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"MARCO WILD-TYPE" "MARCO WILD-TYPE" "MARCO WILD-TYPE" 
[1] "hr=" "2.3"
D90V2, continuous
D90V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MARCO MUTATED      6    3
  MARCO WILD-TYPE   71   75
        clus
vv       MARCO MUTATED MARCO WILD-TYPE
  FEMALE             6              71
  MALE               3              75
D90V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MARCO MUTATED      7    2
  MARCO WILD-TYPE  121   22
                               clus
vv                              MARCO MUTATED MARCO WILD-TYPE
  COLON ADENOCARCINOMA                      7             121
  COLON MUCINOUS ADENOCARCINOMA             2              22
D90V5, multiclass
    clus
vv   MARCO MUTATED MARCO WILD-TYPE
  T1             0               4
  T2             2              31
  T3             5              98
  T4             2              12
D90V6, multiclass
    clus
vv   MARCO MUTATED MARCO WILD-TYPE
  N0             8              83
  N1             0              30
  N2             1              33
D90V7, multiclass
     clus
vv    MARCO MUTATED MARCO WILD-TYPE
  M0              8             122
  M1              1              20
  M1A             0               1
D90V8, multiclass
     clus
vv    MARCO MUTATED MARCO WILD-TYPE
  I               2              28
  II              6              51
  III             0              44
  IV              1              20

Clustering(91) Variable = ACVR2A MUTATION ANALYSIS
D91V1, survival
                  sevent
clus2               0  1
  ACVR2A MUTATED    6  0
  ACVR2A WILD-TYPE 62 11
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               6               73 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
               0               11 
$`ACVR2A MUTATED`
TCGA-A6-2672 TCGA-AA-3710 TCGA-AA-3966 TCGA-AA-A010 TCGA-AA-A01V TCGA-AA-A02F 
       16.54         1.02         1.02        20.98        35.01        39.95 

$`ACVR2A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02H TCGA-AA-A02J 
       26.01        20.98        39.06        51.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  ACVR2A MUTATED ACVR2A WILD-TYPE 
            1.02             0.92 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
           39.95            51.95 
  ACVR2A MUTATED ACVR2A WILD-TYPE 
           18.76            10.92 
[1] "1.0 - 40.0 (18.8)" "0.9 - 52.0 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ACVR2A WILD-TYPE"   "ACVR2A MUTATED" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" "ACVR2A WILD-TYPE" 
[1] "hr="   "8e+07"
D91V2, continuous
D91V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR2A MUTATED      7    1
  ACVR2A WILD-TYPE   70   77
        clus
vv       ACVR2A MUTATED ACVR2A WILD-TYPE
  FEMALE              7               70
  MALE                1               77
D91V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACVR2A MUTATED      7    1
  ACVR2A WILD-TYPE  121   23
                               clus
vv                              ACVR2A MUTATED ACVR2A WILD-TYPE
  COLON ADENOCARCINOMA                       7              121
  COLON MUCINOUS ADENOCARCINOMA              1               23
D91V5, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  T1              0                4
  T2              1               32
  T3              6               97
  T4              1               13
D91V6, multiclass
    clus
vv   ACVR2A MUTATED ACVR2A WILD-TYPE
  N0              6               85
  N1              2               28
  N2              0               34
D91V7, multiclass
     clus
vv    ACVR2A MUTATED ACVR2A WILD-TYPE
  M0               7              123
  M1               1               20
  M1A              0                1
D91V8, multiclass
     clus
vv    ACVR2A MUTATED ACVR2A WILD-TYPE
  I                1               29
  II               5               52
  III              1               43
  IV               1               20

Clustering(92) Variable = OR7C1 MUTATION ANALYSIS
D92V1, survival
                 sevent
clus2              0  1
  OR7C1 MUTATED    1  1
  OR7C1 WILD-TYPE 67 10
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              2              77 
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              1              10 
$`OR7C1 MUTATED`
TCGA-AA-3518 TCGA-AY-4071 
        1.02         0.95 

$`OR7C1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
       40.96        39.95        18.02        40.93        16.31 

  OR7C1 MUTATED OR7C1 WILD-TYPE 
           0.95            0.92 
  OR7C1 MUTATED OR7C1 WILD-TYPE 
           1.02           51.95 
  OR7C1 MUTATED OR7C1 WILD-TYPE 
          0.985          12.000 
[1] "0.9 - 1.0 (1.0)"   "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" "OR7C1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE"   "OR7C1 MUTATED" 
[1] "Remove cluster labels:" "OR7C1 MUTATED"         
clus
  OR7C1 MUTATED OR7C1 WILD-TYPE 
              2              77 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3526      TCGA-AA-3555 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679      TCGA-AA-3685 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3818 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877      TCGA-AA-3939 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J 
"OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" "OR7C1 WILD-TYPE" 
     TCGA-AY-4070 
"OR7C1 WILD-TYPE" 
D92V2, continuous
D92V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR7C1 MUTATED      4    2
  OR7C1 WILD-TYPE   73   76
        clus
vv       OR7C1 MUTATED OR7C1 WILD-TYPE
  FEMALE             4              73
  MALE               2              76
D92V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR7C1 MUTATED      3    2
  OR7C1 WILD-TYPE  125   22
                               clus
vv                              OR7C1 MUTATED OR7C1 WILD-TYPE
  COLON ADENOCARCINOMA                      3             125
  COLON MUCINOUS ADENOCARCINOMA             2              22
D92V5, multiclass
    clus
vv   OR7C1 MUTATED OR7C1 WILD-TYPE
  T1             1               3
  T2             1              32
  T3             4              99
  T4             0              14
D92V6, multiclass
    clus
vv   OR7C1 MUTATED OR7C1 WILD-TYPE
  N0             4              87
  N1             1              29
  N2             1              33
D92V7, multiclass
     clus
vv    OR7C1 MUTATED OR7C1 WILD-TYPE
  M0              5             125
  M1              0              21
  M1A             0               1
D92V8, multiclass
     clus
vv    OR7C1 MUTATED OR7C1 WILD-TYPE
  I               2              28
  II              2              55
  III             2              42
  IV              0              21

Clustering(93) Variable = SOHLH2 MUTATION ANALYSIS
D93V1, survival
                  sevent
clus2               0  1
  SOHLH2 MUTATED    2  2
  SOHLH2 WILD-TYPE 66  9
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
               4               75 
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
               2                9 
$`SOHLH2 MUTATED`
TCGA-AA-3666 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        1.02         1.02         4.01        20.98 

$`SOHLH2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
            1.02             0.92 
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
           20.98            51.95 
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
           2.515           12.000 
[1] "1.0 - 21.0 (2.5)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SOHLH2 WILD-TYPE"   "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SOHLH2 MUTATED" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" "SOHLH2 WILD-TYPE" 
[1] "hr=" "5.9"
D93V2, continuous
D93V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SOHLH2 MUTATED      4    4
  SOHLH2 WILD-TYPE   73   74
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  FEMALE              4               73
  MALE                4               74
D93V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SOHLH2 MUTATED      7    1
  SOHLH2 WILD-TYPE  121   23
                               clus
vv                              SOHLH2 MUTATED SOHLH2 WILD-TYPE
  COLON ADENOCARCINOMA                       7              121
  COLON MUCINOUS ADENOCARCINOMA              1               23
D93V5, multiclass
    clus
vv   SOHLH2 MUTATED SOHLH2 WILD-TYPE
  T1              0                4
  T2              2               31
  T3              3              100
  T4              3               11
D93V6, multiclass
    clus
vv   SOHLH2 MUTATED SOHLH2 WILD-TYPE
  N0              4               87
  N1              3               27
  N2              1               33
D93V7, multiclass
     clus
vv    SOHLH2 MUTATED SOHLH2 WILD-TYPE
  M0               6              124
  M1               1               20
  M1A              0                1
D93V8, multiclass
     clus
vv    SOHLH2 MUTATED SOHLH2 WILD-TYPE
  I                1               29
  II               2               55
  III              3               41
  IV               1               20

Clustering(94) Variable = FAM135B MUTATION ANALYSIS
D94V1, survival
                   sevent
clus2                0  1
  FAM135B MUTATED    5  1
  FAM135B WILD-TYPE 63 10
  FAM135B MUTATED FAM135B WILD-TYPE 
                6                73 
  FAM135B MUTATED FAM135B WILD-TYPE 
                1                10 
$`FAM135B MUTATED`
TCGA-A6-3810 TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A02Y 
        8.09         0.99         1.02        38.07        35.01        39.95 

$`FAM135B WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       12.00        13.02         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        40.96        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  FAM135B MUTATED FAM135B WILD-TYPE 
             0.99              0.92 
  FAM135B MUTATED FAM135B WILD-TYPE 
            39.95             51.95 
  FAM135B MUTATED FAM135B WILD-TYPE 
            21.55             12.00 
[1] "1.0 - 40.0 (21.5)" "0.9 - 52.0 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE"   "FAM135B MUTATED" "FAM135B WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"FAM135B WILD-TYPE" "FAM135B WILD-TYPE" "FAM135B WILD-TYPE" 
[1] "hr=" "1.3"
D94V2, continuous
D94V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM135B MUTATED      5    7
  FAM135B WILD-TYPE   72   71
        clus
vv       FAM135B MUTATED FAM135B WILD-TYPE
  FEMALE               5                72
  MALE                 7                71
D94V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM135B MUTATED      9    3
  FAM135B WILD-TYPE  119   21
                               clus
vv                              FAM135B MUTATED FAM135B WILD-TYPE
  COLON ADENOCARCINOMA                        9               119
  COLON MUCINOUS ADENOCARCINOMA               3                21
D94V5, multiclass
    clus
vv   FAM135B MUTATED FAM135B WILD-TYPE
  T1               0                 4
  T2               3                30
  T3               9                94
  T4               0                14
D94V6, multiclass
    clus
vv   FAM135B MUTATED FAM135B WILD-TYPE
  N0               5                86
  N1               4                26
  N2               3                31
D94V7, multiclass
     clus
vv    FAM135B MUTATED FAM135B WILD-TYPE
  M0                9               121
  M1                2                19
  M1A               0                 1
D94V8, multiclass
     clus
vv    FAM135B MUTATED FAM135B WILD-TYPE
  I                 2                28
  II                2                55
  III               5                39
  IV                2                19

Clustering(95) Variable = KIAA1486 MUTATION ANALYSIS
D95V1, survival
                    sevent
clus2                 0  1
  KIAA1486 MUTATED    5  2
  KIAA1486 WILD-TYPE 63  9
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
                 7                 72 
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
                 2                  9 
$`KIAA1486 MUTATED`
TCGA-AA-3848 TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01R TCGA-AA-A02O 
        0.99         1.02         4.01        20.98        35.01         0.92 
TCGA-AY-4070 
       16.31 

$`KIAA1486 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4071 
        5.03        40.96        39.95        18.02        40.93         0.95 

  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
              0.92               0.92 
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
             35.01              51.95 
  KIAA1486 MUTATED KIAA1486 WILD-TYPE 
              4.01              12.00 
[1] "0.9 - 35.0 (4.0)"  "0.9 - 52.0 (12.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AY-4071 
"KIAA1486 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AY-4071 
"KIAA1486 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
  "KIAA1486 MUTATED" "KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"KIAA1486 WILD-TYPE" "KIAA1486 WILD-TYPE"   "KIAA1486 MUTATED" 
        TCGA-AY-4071 
"KIAA1486 WILD-TYPE" 
[1] "hr=" "3.1"
D95V2, continuous
D95V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1486 MUTATED      5    4
  KIAA1486 WILD-TYPE   72   74
        clus
vv       KIAA1486 MUTATED KIAA1486 WILD-TYPE
  FEMALE                5                 72
  MALE                  4                 74
D95V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  KIAA1486 MUTATED      6    3
  KIAA1486 WILD-TYPE  122   21
                               clus
vv                              KIAA1486 MUTATED KIAA1486 WILD-TYPE
  COLON ADENOCARCINOMA                         6                122
  COLON MUCINOUS ADENOCARCINOMA                3                 21
D95V5, multiclass
    clus
vv   KIAA1486 MUTATED KIAA1486 WILD-TYPE
  T1                0                  4
  T2                0                 33
  T3                7                 96
  T4                2                 12
D95V6, multiclass
    clus
vv   KIAA1486 MUTATED KIAA1486 WILD-TYPE
  N0                4                 87
  N1                2                 28
  N2                3                 31
D95V7, multiclass
     clus
vv    KIAA1486 MUTATED KIAA1486 WILD-TYPE
  M0                 9                121
  M1                 0                 21
  M1A                0                  1
D95V8, multiclass
     clus
vv    KIAA1486 MUTATED KIAA1486 WILD-TYPE
  I                  0                 30
  II                 4                 53
  III                5                 39
  IV                 0                 21

Clustering(96) Variable = ARID1A MUTATION ANALYSIS
D96V1, survival
                  sevent
clus2               0  1
  ARID1A MUTATED   10  0
  ARID1A WILD-TYPE 58 11
  ARID1A MUTATED ARID1A WILD-TYPE 
              10               69 
  ARID1A MUTATED ARID1A WILD-TYPE 
               0               11 
$`ARID1A MUTATED`
TCGA-A6-2676 TCGA-AA-3555 TCGA-AA-3947 TCGA-AA-A00A TCGA-AA-A00E TCGA-AA-A00J 
       14.70         0.99         0.99        18.02        30.02        18.02 
TCGA-AA-A00L TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01R 
       17.00        20.98        15.02        35.01 

$`ARID1A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D 
        1.02         0.99         1.02         0.99        13.94        19.00 
TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       34.03        18.02         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       17.00        14.99        21.99         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  ARID1A MUTATED ARID1A WILD-TYPE 
            0.99             0.92 
  ARID1A MUTATED ARID1A WILD-TYPE 
           35.01            51.95 
  ARID1A MUTATED ARID1A WILD-TYPE 
           17.51             8.09 
[1] "1.0 - 35.0 (17.5)" "0.9 - 52.0 (8.1)" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ARID1A MUTATED"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ARID1A MUTATED"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "ARID1A MUTATED" "ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ARID1A MUTATED"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ARID1A WILD-TYPE"   "ARID1A MUTATED" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ARID1A WILD-TYPE" "ARID1A WILD-TYPE" "ARID1A WILD-TYPE" 
[1] "hr="     "8.9e+07"
D96V2, continuous
D96V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED      9    7
  ARID1A WILD-TYPE   68   71
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  FEMALE              9               68
  MALE                7               71
D96V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARID1A MUTATED     10    6
  ARID1A WILD-TYPE  118   18
                               clus
vv                              ARID1A MUTATED ARID1A WILD-TYPE
  COLON ADENOCARCINOMA                      10              118
  COLON MUCINOUS ADENOCARCINOMA              6               18
D96V5, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  T1              0                4
  T2              1               32
  T3             11               92
  T4              3               11
D96V6, multiclass
    clus
vv   ARID1A MUTATED ARID1A WILD-TYPE
  N0             12               79
  N1              1               29
  N2              3               31
D96V7, multiclass
     clus
vv    ARID1A MUTATED ARID1A WILD-TYPE
  M0              15              115
  M1               1               20
  M1A              0                1
D96V8, multiclass
     clus
vv    ARID1A MUTATED ARID1A WILD-TYPE
  I                1               29
  II              11               46
  III              3               41
  IV               1               20

Clustering(97) Variable = IL18R1 MUTATION ANALYSIS
D97V1, survival
                  sevent
clus2               0  1
  IL18R1 MUTATED    4  0
  IL18R1 WILD-TYPE 64 11
  IL18R1 MUTATED IL18R1 WILD-TYPE 
               4               75 
  IL18R1 MUTATED IL18R1 WILD-TYPE 
               0               11 
$`IL18R1 MUTATED`
TCGA-AA-3877 TCGA-AA-A00J TCGA-AA-A010 TCGA-AA-A02O 
        0.99        18.02        20.98         0.92 

$`IL18R1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         2.01         5.03        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  IL18R1 MUTATED IL18R1 WILD-TYPE 
            0.92             0.92 
  IL18R1 MUTATED IL18R1 WILD-TYPE 
           20.98            51.95 
  IL18R1 MUTATED IL18R1 WILD-TYPE 
           9.505           12.000 
[1] "0.9 - 21.0 (9.5)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE"   "IL18R1 MUTATED" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "IL18R1 MUTATED" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" "IL18R1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D97V2, continuous
D97V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  IL18R1 MUTATED      4    4
  IL18R1 WILD-TYPE   73   74
        clus
vv       IL18R1 MUTATED IL18R1 WILD-TYPE
  FEMALE              4               73
  MALE                4               74
D97V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  IL18R1 MUTATED      5    3
  IL18R1 WILD-TYPE  123   21
                               clus
vv                              IL18R1 MUTATED IL18R1 WILD-TYPE
  COLON ADENOCARCINOMA                       5              123
  COLON MUCINOUS ADENOCARCINOMA              3               21
D97V5, multiclass
    clus
vv   IL18R1 MUTATED IL18R1 WILD-TYPE
  T1              1                3
  T2              1               32
  T3              4               99
  T4              2               12
D97V6, multiclass
    clus
vv   IL18R1 MUTATED IL18R1 WILD-TYPE
  N0              3               88
  N1              3               27
  N2              2               32
D97V7, multiclass
     clus
vv    IL18R1 MUTATED IL18R1 WILD-TYPE
  M0               8              122
  M1               0               21
  M1A              0                1
D97V8, multiclass
     clus
vv    IL18R1 MUTATED IL18R1 WILD-TYPE
  I                1               29
  II               2               55
  III              5               39
  IV               0               21

Clustering(98) Variable = TNR MUTATION ANALYSIS
D98V1, survival
               sevent
clus2            0  1
  TNR MUTATED    7  1
  TNR WILD-TYPE 61 10
  TNR MUTATED TNR WILD-TYPE 
            8            71 
  TNR MUTATED TNR WILD-TYPE 
            1            10 
$`TNR MUTATED`
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00N 
        1.02         0.99         0.99         0.99         1.02         4.01 
TCGA-AA-A01I TCGA-AA-A01Q 
       12.00         1.02 

$`TNR WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        1.02         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        0.99         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R 
        0.99        13.02        12.00        13.02        38.07        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  TNR MUTATED TNR WILD-TYPE 
         0.99          0.92 
  TNR MUTATED TNR WILD-TYPE 
        12.00         51.95 
  TNR MUTATED TNR WILD-TYPE 
         1.02         13.91 
[1] "1.0 - 12.0 (1.0)"  "0.9 - 52.0 (13.9)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"TNR WILD-TYPE" "TNR WILD-TYPE"   "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
  "TNR MUTATED" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" "TNR WILD-TYPE" 
[1] "hr=" "2.2"
D98V2, continuous
D98V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TNR MUTATED      6    9
  TNR WILD-TYPE   71   69
        clus
vv       TNR MUTATED TNR WILD-TYPE
  FEMALE           6            71
  MALE             9            69
D98V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TNR MUTATED     11    3
  TNR WILD-TYPE  117   21
                               clus
vv                              TNR MUTATED TNR WILD-TYPE
  COLON ADENOCARCINOMA                   11           117
  COLON MUCINOUS ADENOCARCINOMA           3            21
D98V5, multiclass
    clus
vv   TNR MUTATED TNR WILD-TYPE
  T1           0             4
  T2           5            28
  T3           7            96
  T4           3            11
D98V6, multiclass
    clus
vv   TNR MUTATED TNR WILD-TYPE
  N0          14            77
  N1           1            29
  N2           0            34
D98V7, multiclass
     clus
vv    TNR MUTATED TNR WILD-TYPE
  M0           13           117
  M1            1            20
  M1A           0             1
D98V8, multiclass
     clus
vv    TNR MUTATED TNR WILD-TYPE
  I             4            26
  II            9            48
  III           0            44
  IV            1            20

Clustering(99) Variable = CADM1 MUTATION ANALYSIS
D99V1, survival
                 sevent
clus2              0  1
  CADM1 MUTATED    4  1
  CADM1 WILD-TYPE 64 10
  CADM1 MUTATED CADM1 WILD-TYPE 
              5              74 
  CADM1 MUTATED CADM1 WILD-TYPE 
              1              10 
$`CADM1 MUTATED`
TCGA-AA-3666 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3966 TCGA-AA-A010 
        1.02         0.99         0.99         1.02        20.98 

$`CADM1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3818 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  CADM1 MUTATED CADM1 WILD-TYPE 
           0.99            0.92 
  CADM1 MUTATED CADM1 WILD-TYPE 
          20.98           51.95 
  CADM1 MUTATED CADM1 WILD-TYPE 
           1.02           12.51 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (12.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE"   "CADM1 MUTATED" "CADM1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE"   "CADM1 MUTATED"   "CADM1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CADM1 WILD-TYPE"   "CADM1 MUTATED" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CADM1 MUTATED" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE"   "CADM1 MUTATED" "CADM1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE"   "CADM1 MUTATED"   "CADM1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CADM1 WILD-TYPE"   "CADM1 MUTATED" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CADM1 MUTATED" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE"   "CADM1 MUTATED" "CADM1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE"   "CADM1 MUTATED"   "CADM1 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CADM1 WILD-TYPE"   "CADM1 MUTATED" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CADM1 MUTATED" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CADM1 WILD-TYPE" "CADM1 WILD-TYPE" "CADM1 WILD-TYPE" 
[1] "hr=" "3"  
D99V2, continuous
D99V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CADM1 MUTATED      6    2
  CADM1 WILD-TYPE   71   76
        clus
vv       CADM1 MUTATED CADM1 WILD-TYPE
  FEMALE             6              71
  MALE               2              76
D99V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CADM1 MUTATED      6    1
  CADM1 WILD-TYPE  122   23
                               clus
vv                              CADM1 MUTATED CADM1 WILD-TYPE
  COLON ADENOCARCINOMA                      6             122
  COLON MUCINOUS ADENOCARCINOMA             1              23
D99V5, multiclass
    clus
vv   CADM1 MUTATED CADM1 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             6              97
  T4             1              13
D99V6, multiclass
    clus
vv   CADM1 MUTATED CADM1 WILD-TYPE
  N0             5              86
  N1             1              29
  N2             2              32
D99V7, multiclass
     clus
vv    CADM1 MUTATED CADM1 WILD-TYPE
  M0              7             123
  M1              1              20
  M1A             0               1
D99V8, multiclass
     clus
vv    CADM1 MUTATED CADM1 WILD-TYPE
  I               1              29
  II              4              53
  III             2              42
  IV              1              20

Clustering(100) Variable = EVC2 MUTATION ANALYSIS
D100V1, survival
                sevent
clus2             0  1
  EVC2 MUTATED    7  2
  EVC2 WILD-TYPE 61  9
  EVC2 MUTATED EVC2 WILD-TYPE 
             9             70 
  EVC2 MUTATED EVC2 WILD-TYPE 
             2              9 
$`EVC2 MUTATED`
TCGA-A6-2683 TCGA-AA-3555 TCGA-AA-3811 TCGA-AA-3844 TCGA-AA-3977 TCGA-AA-A00A 
       15.52         0.99         0.99         0.92         1.02        18.02 
TCGA-AA-A00N TCGA-AA-A01Q TCGA-AA-A024 
        4.01         1.02        39.06 

$`EVC2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3818 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99         0.99        13.94        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R 
       13.02        12.00        12.00        13.02        38.07        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 
        1.02        33.04        35.01        26.01        20.98        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  EVC2 MUTATED EVC2 WILD-TYPE 
          0.92           0.92 
  EVC2 MUTATED EVC2 WILD-TYPE 
         39.06          51.95 
  EVC2 MUTATED EVC2 WILD-TYPE 
          1.02          12.51 
[1] "0.9 - 39.1 (1.0)"  "0.9 - 52.0 (12.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"EVC2 WILD-TYPE"   "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "EVC2 MUTATED" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE"   "EVC2 MUTATED" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"EVC2 WILD-TYPE" "EVC2 WILD-TYPE" "EVC2 WILD-TYPE" 
[1] "hr=" "2"  
D100V2, continuous
D100V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  EVC2 MUTATED      7    6
  EVC2 WILD-TYPE   70   72
        clus
vv       EVC2 MUTATED EVC2 WILD-TYPE
  FEMALE            7             70
  MALE              6             72
D100V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  EVC2 MUTATED     10    3
  EVC2 WILD-TYPE  118   21
                               clus
vv                              EVC2 MUTATED EVC2 WILD-TYPE
  COLON ADENOCARCINOMA                    10            118
  COLON MUCINOUS ADENOCARCINOMA            3             21
D100V5, multiclass
    clus
vv   EVC2 MUTATED EVC2 WILD-TYPE
  T1            0              4
  T2            1             32
  T3           10             93
  T4            2             12
D100V6, multiclass
    clus
vv   EVC2 MUTATED EVC2 WILD-TYPE
  N0            9             82
  N1            2             28
  N2            2             32
D100V7, multiclass
     clus
vv    EVC2 MUTATED EVC2 WILD-TYPE
  M0            11            119
  M1             1             20
  M1A            0              1
D100V8, multiclass
     clus
vv    EVC2 MUTATED EVC2 WILD-TYPE
  I              0             30
  II             7             50
  III            4             40
  IV             1             20

Clustering(101) Variable = CYTL1 MUTATION ANALYSIS
D101V1, survival
                 sevent
clus2              0  1
  CYTL1 MUTATED    2  0
  CYTL1 WILD-TYPE 66 11
  CYTL1 MUTATED CYTL1 WILD-TYPE 
              2              77 
  CYTL1 MUTATED CYTL1 WILD-TYPE 
              0              11 
$`CYTL1 MUTATED`
TCGA-A6-2670 TCGA-AA-A010 
       13.91        20.98 

$`CYTL1 WILD-TYPE`
TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       16.54        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  CYTL1 MUTATED CYTL1 WILD-TYPE 
          13.91            0.92 
  CYTL1 MUTATED CYTL1 WILD-TYPE 
          20.98           51.95 
  CYTL1 MUTATED CYTL1 WILD-TYPE 
         17.445          10.920 
[1] "13.9 - 21.0 (17.4)" "0.9 - 52.0 (10.9)" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CYTL1 MUTATED" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
[1] "Remove cluster labels:" "CYTL1 MUTATED"         
clus
  CYTL1 MUTATED CYTL1 WILD-TYPE 
              2              77 
     TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676      TCGA-A6-2677 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807      TCGA-A6-3808 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526      TCGA-AA-3555 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679      TCGA-AA-3685 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3818 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877      TCGA-AA-3939 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A017 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G      TCGA-AA-A01I 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AY-4070 
"CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" "CYTL1 WILD-TYPE" 
     TCGA-AY-4071 
"CYTL1 WILD-TYPE" 
D101V2, continuous
D101V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CYTL1 MUTATED      2    2
  CYTL1 WILD-TYPE   75   76
        clus
vv       CYTL1 MUTATED CYTL1 WILD-TYPE
  FEMALE             2              75
  MALE               2              76
D101V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CYTL1 MUTATED      4    0
  CYTL1 WILD-TYPE  124   24
                               clus
vv                              CYTL1 MUTATED CYTL1 WILD-TYPE
  COLON ADENOCARCINOMA                      4             124
  COLON MUCINOUS ADENOCARCINOMA             0              24
D101V5, multiclass
    clus
vv   CYTL1 MUTATED CYTL1 WILD-TYPE
  T1             1               3
  T2             0              33
  T3             2             101
  T4             1              13
D101V6, multiclass
    clus
vv   CYTL1 MUTATED CYTL1 WILD-TYPE
  N0             4              87
  N1             0              30
  N2             0              34
D101V7, multiclass
     clus
vv    CYTL1 MUTATED CYTL1 WILD-TYPE
  M0              4             126
  M1              0              21
  M1A             0               1
D101V8, multiclass
     clus
vv    CYTL1 MUTATED CYTL1 WILD-TYPE
  I               1              29
  II              3              54
  III             0              44
  IV              0              21

Clustering(102) Variable = OR6T1 MUTATION ANALYSIS
D102V1, survival
                 sevent
clus2              0  1
  OR6T1 MUTATED    3  0
  OR6T1 WILD-TYPE 65 11
  OR6T1 MUTATED OR6T1 WILD-TYPE 
              3              76 
  OR6T1 MUTATED OR6T1 WILD-TYPE 
              0              11 
$`OR6T1 MUTATED`
TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00L 
        1.02        30.02        17.00 

$`OR6T1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        18.02        19.00        34.03        18.02        18.02 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  OR6T1 MUTATED OR6T1 WILD-TYPE 
           1.02            0.92 
  OR6T1 MUTATED OR6T1 WILD-TYPE 
          30.02           51.95 
  OR6T1 MUTATED OR6T1 WILD-TYPE 
          17.00           11.46 
[1] "1.0 - 30.0 (17.0)" "0.9 - 52.0 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE"   "OR6T1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE"   "OR6T1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE"   "OR6T1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
  "OR6T1 MUTATED" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" "OR6T1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D102V2, continuous
D102V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6T1 MUTATED      2    4
  OR6T1 WILD-TYPE   75   74
        clus
vv       OR6T1 MUTATED OR6T1 WILD-TYPE
  FEMALE             2              75
  MALE               4              74
D102V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6T1 MUTATED      5    1
  OR6T1 WILD-TYPE  123   23
                               clus
vv                              OR6T1 MUTATED OR6T1 WILD-TYPE
  COLON ADENOCARCINOMA                      5             123
  COLON MUCINOUS ADENOCARCINOMA             1              23
D102V5, multiclass
    clus
vv   OR6T1 MUTATED OR6T1 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             4              99
  T4             1              13
D102V6, multiclass
    clus
vv   OR6T1 MUTATED OR6T1 WILD-TYPE
  N0             5              86
  N1             0              30
  N2             1              33
D102V7, multiclass
     clus
vv    OR6T1 MUTATED OR6T1 WILD-TYPE
  M0              4             126
  M1              1              20
  M1A             0               1
D102V8, multiclass
     clus
vv    OR6T1 MUTATED OR6T1 WILD-TYPE
  I               0              30
  II              4              53
  III             0              44
  IV              1              20

Clustering(103) Variable = RNASE11 MUTATION ANALYSIS
D103V1, survival
                   sevent
clus2                0  1
  RNASE11 MUTATED    4  0
  RNASE11 WILD-TYPE 64 11
  RNASE11 MUTATED RNASE11 WILD-TYPE 
                4                75 
  RNASE11 MUTATED RNASE11 WILD-TYPE 
                0                11 
$`RNASE11 MUTATED`
TCGA-AA-3977 TCGA-AA-A00D TCGA-AA-A010 TCGA-AA-A02W 
        1.02        19.00        20.98        40.96 

$`RNASE11 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        18.02        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F 
       39.95         2.01         5.03         0.92        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  RNASE11 MUTATED RNASE11 WILD-TYPE 
             1.02              0.92 
  RNASE11 MUTATED RNASE11 WILD-TYPE 
            40.96             51.95 
  RNASE11 MUTATED RNASE11 WILD-TYPE 
            19.99             10.92 
[1] "1.0 - 41.0 (20.0)" "0.9 - 52.0 (10.9)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"RNASE11 WILD-TYPE"   "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"RNASE11 WILD-TYPE"   "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE"   "RNASE11 MUTATED" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"RNASE11 WILD-TYPE"   "RNASE11 MUTATED" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" "RNASE11 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D103V2, continuous
D103V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RNASE11 MUTATED      3    2
  RNASE11 WILD-TYPE   74   76
        clus
vv       RNASE11 MUTATED RNASE11 WILD-TYPE
  FEMALE               3                74
  MALE                 2                76
D103V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RNASE11 MUTATED      5    0
  RNASE11 WILD-TYPE  123   24
                               clus
vv                              RNASE11 MUTATED RNASE11 WILD-TYPE
  COLON ADENOCARCINOMA                        5               123
  COLON MUCINOUS ADENOCARCINOMA               0                24
D103V5, multiclass
    clus
vv   RNASE11 MUTATED RNASE11 WILD-TYPE
  T1               0                 4
  T2               3                30
  T3               1               102
  T4               1                13
D103V6, multiclass
    clus
vv   RNASE11 MUTATED RNASE11 WILD-TYPE
  N0               5                86
  N1               0                30
  N2               0                34
D103V7, multiclass
     clus
vv    RNASE11 MUTATED RNASE11 WILD-TYPE
  M0                4               126
  M1                0                21
  M1A               0                 1
D103V8, multiclass
     clus
vv    RNASE11 MUTATED RNASE11 WILD-TYPE
  I                 2                28
  II                2                55
  III               0                44
  IV                0                21

Clustering(104) Variable = DLC1 MUTATION ANALYSIS
D104V1, survival
                sevent
clus2             0  1
  DLC1 MUTATED   10  2
  DLC1 WILD-TYPE 58  9
  DLC1 MUTATED DLC1 WILD-TYPE 
            12             67 
  DLC1 MUTATED DLC1 WILD-TYPE 
             2              9 
$`DLC1 MUTATED`
TCGA-AA-3518 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-3986 
        1.02         0.99         0.99         0.99         1.02         0.99 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A010 TCGA-AA-A01R TCGA-AA-A01V TCGA-AA-A03F 
        4.01        27.02        20.98        35.01        35.01        18.02 

$`DLC1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        18.02        17.00        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        40.96        39.95        40.93        16.31 
TCGA-AY-4071 
        0.95 

  DLC1 MUTATED DLC1 WILD-TYPE 
          0.99           0.92 
  DLC1 MUTATED DLC1 WILD-TYPE 
         35.01          51.95 
  DLC1 MUTATED DLC1 WILD-TYPE 
         2.515         12.000 
[1] "1.0 - 35.0 (2.5)"  "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED"   "DLC1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DLC1 WILD-TYPE"   "DLC1 MUTATED"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED"   "DLC1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DLC1 WILD-TYPE"   "DLC1 MUTATED"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED"   "DLC1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DLC1 WILD-TYPE"   "DLC1 MUTATED"   "DLC1 MUTATED" "DLC1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DLC1 WILD-TYPE"   "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "DLC1 MUTATED" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE"   "DLC1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"DLC1 WILD-TYPE" "DLC1 WILD-TYPE" "DLC1 WILD-TYPE" 
[1] "hr=" "1.6"
D104V2, continuous
D104V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DLC1 MUTATED      9    7
  DLC1 WILD-TYPE   68   71
        clus
vv       DLC1 MUTATED DLC1 WILD-TYPE
  FEMALE            9             68
  MALE              7             71
D104V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DLC1 MUTATED     12    4
  DLC1 WILD-TYPE  116   20
                               clus
vv                              DLC1 MUTATED DLC1 WILD-TYPE
  COLON ADENOCARCINOMA                    12            116
  COLON MUCINOUS ADENOCARCINOMA            4             20
D104V5, multiclass
    clus
vv   DLC1 MUTATED DLC1 WILD-TYPE
  T1            0              4
  T2            3             30
  T3           11             92
  T4            2             12
D104V6, multiclass
    clus
vv   DLC1 MUTATED DLC1 WILD-TYPE
  N0            9             82
  N1            2             28
  N2            5             29
D104V7, multiclass
     clus
vv    DLC1 MUTATED DLC1 WILD-TYPE
  M0            15            115
  M1             0             21
  M1A            0              1
D104V8, multiclass
     clus
vv    DLC1 MUTATED DLC1 WILD-TYPE
  I              2             28
  II             6             51
  III            7             37
  IV             0             21

Clustering(105) Variable = CNBD1 MUTATION ANALYSIS
D105V1, survival
                 sevent
clus2              0  1
  CNBD1 MUTATED    3  0
  CNBD1 WILD-TYPE 65 11
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              3              76 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
              0              11 
$`CNBD1 MUTATED`
TCGA-AA-3710 TCGA-AA-3939 TCGA-AA-A010 
        1.02         0.99        20.98 

$`CNBD1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  CNBD1 MUTATED CNBD1 WILD-TYPE 
           0.99            0.92 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
          20.98           51.95 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
           1.02           12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CNBD1 WILD-TYPE"   "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CNBD1 MUTATED" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" "CNBD1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D105V2, continuous
D105V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      4    2
  CNBD1 WILD-TYPE   73   76
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  FEMALE             4              73
  MALE               2              76
D105V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CNBD1 MUTATED      5    1
  CNBD1 WILD-TYPE  123   23
                               clus
vv                              CNBD1 MUTATED CNBD1 WILD-TYPE
  COLON ADENOCARCINOMA                      5             123
  COLON MUCINOUS ADENOCARCINOMA             1              23
D105V5, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             4              99
  T4             1              13
D105V6, multiclass
    clus
vv   CNBD1 MUTATED CNBD1 WILD-TYPE
  N0             6              85
  N1             0              30
  N2             0              34
D105V7, multiclass
     clus
vv    CNBD1 MUTATED CNBD1 WILD-TYPE
  M0              6             124
  M1              0              21
  M1A             0               1
D105V8, multiclass
     clus
vv    CNBD1 MUTATED CNBD1 WILD-TYPE
  I               1              29
  II              5              52
  III             0              44
  IV              0              21

Clustering(106) Variable = ATP7A MUTATION ANALYSIS
D106V1, survival
                 sevent
clus2              0  1
  ATP7A MUTATED    1  1
  ATP7A WILD-TYPE 67 10
  ATP7A MUTATED ATP7A WILD-TYPE 
              2              77 
  ATP7A MUTATED ATP7A WILD-TYPE 
              1              10 
$`ATP7A MUTATED`
TCGA-A6-2683 TCGA-AA-A03F 
       15.52        18.02 

$`ATP7A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        40.93        16.31         0.95 

  ATP7A MUTATED ATP7A WILD-TYPE 
          15.52            0.92 
  ATP7A MUTATED ATP7A WILD-TYPE 
          18.02           51.95 
  ATP7A MUTATED ATP7A WILD-TYPE 
          16.77           10.92 
[1] "15.5 - 18.0 (16.8)" "0.9 - 52.0 (10.9)" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" "ATP7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" "ATP7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" "ATP7A WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE"   "ATP7A MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
[1] "Remove cluster labels:" "ATP7A MUTATED"         
clus
  ATP7A MUTATED ATP7A WILD-TYPE 
              2              77 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-3807      TCGA-A6-3808 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526      TCGA-AA-3555 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679      TCGA-AA-3685 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811      TCGA-AA-3818 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844      TCGA-AA-3846 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877      TCGA-AA-3939 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03J      TCGA-AY-4070 
"ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" "ATP7A WILD-TYPE" 
     TCGA-AY-4071 
"ATP7A WILD-TYPE" 
D106V2, continuous
D106V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ATP7A MUTATED      3    2
  ATP7A WILD-TYPE   74   76
        clus
vv       ATP7A MUTATED ATP7A WILD-TYPE
  FEMALE             3              74
  MALE               2              76
D106V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ATP7A MUTATED      4    1
  ATP7A WILD-TYPE  124   23
                               clus
vv                              ATP7A MUTATED ATP7A WILD-TYPE
  COLON ADENOCARCINOMA                      4             124
  COLON MUCINOUS ADENOCARCINOMA             1              23
D106V5, multiclass
    clus
vv   ATP7A MUTATED ATP7A WILD-TYPE
  T1             0               4
  T2             0              33
  T3             2             101
  T4             3              11
D106V6, multiclass
    clus
vv   ATP7A MUTATED ATP7A WILD-TYPE
  N0             2              89
  N1             2              28
  N2             1              33
D106V7, multiclass
     clus
vv    ATP7A MUTATED ATP7A WILD-TYPE
  M0              3             127
  M1              2              19
  M1A             0               1
D106V8, multiclass
     clus
vv    ATP7A MUTATED ATP7A WILD-TYPE
  I               0              30
  II              1              56
  III             2              42
  IV              2              19

Clustering(107) Variable = OR6B3 MUTATION ANALYSIS
D107V1, survival
                 sevent
clus2              0  1
  OR6B3 MUTATED    1  1
  OR6B3 WILD-TYPE 67 10
  OR6B3 MUTATED OR6B3 WILD-TYPE 
              2              77 
  OR6B3 MUTATED OR6B3 WILD-TYPE 
              1              10 
$`OR6B3 MUTATED`
TCGA-AA-A00N TCGA-AA-A029 
        4.01        51.95 

$`OR6B3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       39.06        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  OR6B3 MUTATED OR6B3 WILD-TYPE 
           4.01            0.92 
  OR6B3 MUTATED OR6B3 WILD-TYPE 
          51.95           40.96 
  OR6B3 MUTATED OR6B3 WILD-TYPE 
          27.98           12.00 
[1] "4.0 - 52.0 (28.0)" "0.9 - 41.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6B3 WILD-TYPE"   "OR6B3 MUTATED" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "OR6B3 MUTATED" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6B3 WILD-TYPE"   "OR6B3 MUTATED" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "OR6B3 MUTATED" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR6B3 WILD-TYPE"   "OR6B3 MUTATED" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
  "OR6B3 MUTATED" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
[1] "Remove cluster labels:" "OR6B3 MUTATED"         
clus
  OR6B3 MUTATED OR6B3 WILD-TYPE 
              2              77 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A02F 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AY-4070 
"OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" "OR6B3 WILD-TYPE" 
     TCGA-AY-4071 
"OR6B3 WILD-TYPE" 
D107V2, continuous
D107V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6B3 MUTATED      0    5
  OR6B3 WILD-TYPE   77   73
        clus
vv       OR6B3 MUTATED OR6B3 WILD-TYPE
  FEMALE             0              77
  MALE               5              73
D107V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6B3 MUTATED      4    1
  OR6B3 WILD-TYPE  124   23
                               clus
vv                              OR6B3 MUTATED OR6B3 WILD-TYPE
  COLON ADENOCARCINOMA                      4             124
  COLON MUCINOUS ADENOCARCINOMA             1              23
D107V5, multiclass
    clus
vv   OR6B3 MUTATED OR6B3 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             3             100
  T4             1              13
D107V6, multiclass
    clus
vv   OR6B3 MUTATED OR6B3 WILD-TYPE
  N0             5              86
  N1             0              30
  N2             0              34
D107V7, multiclass
     clus
vv    OR6B3 MUTATED OR6B3 WILD-TYPE
  M0              5             125
  M1              0              21
  M1A             0               1
D107V8, multiclass
     clus
vv    OR6B3 MUTATED OR6B3 WILD-TYPE
  I               1              29
  II              4              53
  III             0              44
  IV              0              21

Clustering(108) Variable = TLL1 MUTATION ANALYSIS
D108V1, survival
                sevent
clus2             0  1
  TLL1 MUTATED    5  2
  TLL1 WILD-TYPE 63  9
  TLL1 MUTATED TLL1 WILD-TYPE 
             7             72 
  TLL1 MUTATED TLL1 WILD-TYPE 
             2              9 
$`TLL1 MUTATED`
TCGA-AA-3837 TCGA-AA-A004 TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01K 
        1.02        13.94        30.02         4.01        20.98        13.02 
TCGA-AY-4070 
       16.31 

$`TLL1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01P 
       15.02         0.99        13.02        12.00        12.00        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4071 
        0.92        40.96        39.95        18.02        40.93         0.95 

  TLL1 MUTATED TLL1 WILD-TYPE 
          1.02           0.92 
  TLL1 MUTATED TLL1 WILD-TYPE 
         30.02          51.95 
  TLL1 MUTATED TLL1 WILD-TYPE 
         13.94          10.03 
[1] "1.0 - 30.0 (13.9)" "0.9 - 52.0 (10.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "TLL1 MUTATED" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" "TLL1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"TLL1 WILD-TYPE"   "TLL1 MUTATED" "TLL1 WILD-TYPE" 
[1] "hr=" "2.3"
D108V2, continuous
D108V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLL1 MUTATED      5    6
  TLL1 WILD-TYPE   72   72
        clus
vv       TLL1 MUTATED TLL1 WILD-TYPE
  FEMALE            5             72
  MALE              6             72
D108V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TLL1 MUTATED      7    4
  TLL1 WILD-TYPE  121   20
                               clus
vv                              TLL1 MUTATED TLL1 WILD-TYPE
  COLON ADENOCARCINOMA                     7            121
  COLON MUCINOUS ADENOCARCINOMA            4             20
D108V5, multiclass
    clus
vv   TLL1 MUTATED TLL1 WILD-TYPE
  T1            0              4
  T2            1             32
  T3            8             95
  T4            2             12
D108V6, multiclass
    clus
vv   TLL1 MUTATED TLL1 WILD-TYPE
  N0            8             83
  N1            1             29
  N2            2             32
D108V7, multiclass
     clus
vv    TLL1 MUTATED TLL1 WILD-TYPE
  M0            11            119
  M1             0             21
  M1A            0              1
D108V8, multiclass
     clus
vv    TLL1 MUTATED TLL1 WILD-TYPE
  I              1             29
  II             7             50
  III            3             41
  IV             0             21

Clustering(109) Variable = OR2M2 MUTATION ANALYSIS
D109V1, survival
                 sevent
clus2              0  1
  OR2M2 MUTATED    3  2
  OR2M2 WILD-TYPE 65  9
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              5              74 
  OR2M2 MUTATED OR2M2 WILD-TYPE 
              2               9 
$`OR2M2 MUTATED`
TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A02F TCGA-AY-4071 
        1.02         4.01        20.98        39.95         0.95 

$`OR2M2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 
       40.93        16.31 

  OR2M2 MUTATED OR2M2 WILD-TYPE 
           0.95            0.92 
  OR2M2 MUTATED OR2M2 WILD-TYPE 
          39.95           51.95 
  OR2M2 MUTATED OR2M2 WILD-TYPE 
           4.01           12.00 
[1] "0.9 - 40.0 (4.0)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE"   "OR2M2 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE"   "OR2M2 MUTATED" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"OR2M2 WILD-TYPE"   "OR2M2 MUTATED" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"OR2M2 WILD-TYPE" "OR2M2 WILD-TYPE"   "OR2M2 MUTATED" 
[1] "hr=" "2.6"
D109V2, continuous
D109V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M2 MUTATED      5    1
  OR2M2 WILD-TYPE   72   77
        clus
vv       OR2M2 MUTATED OR2M2 WILD-TYPE
  FEMALE             5              72
  MALE               1              77
D109V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M2 MUTATED      2    3
  OR2M2 WILD-TYPE  126   21
                               clus
vv                              OR2M2 MUTATED OR2M2 WILD-TYPE
  COLON ADENOCARCINOMA                      2             126
  COLON MUCINOUS ADENOCARCINOMA             3              21
D109V5, multiclass
    clus
vv   OR2M2 MUTATED OR2M2 WILD-TYPE
  T1             1               3
  T2             0              33
  T3             3             100
  T4             2              12
D109V6, multiclass
    clus
vv   OR2M2 MUTATED OR2M2 WILD-TYPE
  N0             4              87
  N1             1              29
  N2             1              33
D109V7, multiclass
     clus
vv    OR2M2 MUTATED OR2M2 WILD-TYPE
  M0              3             127
  M1              2              19
  M1A             0               1
D109V8, multiclass
     clus
vv    OR2M2 MUTATED OR2M2 WILD-TYPE
  I               1              29
  II              3              54
  III             0              44
  IV              2              19

Clustering(110) Variable = INHBA MUTATION ANALYSIS
D110V1, survival
                 sevent
clus2              0  1
  INHBA MUTATED    5  1
  INHBA WILD-TYPE 63 10
  INHBA MUTATED INHBA WILD-TYPE 
              6              73 
  INHBA MUTATED INHBA WILD-TYPE 
              1              10 
$`INHBA MUTATED`
TCGA-A6-3808 TCGA-AA-3949 TCGA-AA-A00F TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01R 
        9.14         0.99        34.03         4.01        20.98        35.01 

$`INHBA WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  INHBA MUTATED INHBA WILD-TYPE 
           0.99            0.92 
  INHBA MUTATED INHBA WILD-TYPE 
          35.01           51.95 
  INHBA MUTATED INHBA WILD-TYPE 
          15.06           12.00 
[1] "1.0 - 35.0 (15.1)" "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE"   "INHBA MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"INHBA WILD-TYPE"   "INHBA MUTATED" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"INHBA WILD-TYPE" "INHBA WILD-TYPE" "INHBA WILD-TYPE" 
[1] "hr=" "1.2"
D110V2, continuous
D110V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INHBA MUTATED      2    5
  INHBA WILD-TYPE   75   73
        clus
vv       INHBA MUTATED INHBA WILD-TYPE
  FEMALE             2              75
  MALE               5              73
D110V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INHBA MUTATED      2    5
  INHBA WILD-TYPE  126   19
                               clus
vv                              INHBA MUTATED INHBA WILD-TYPE
  COLON ADENOCARCINOMA                      2             126
  COLON MUCINOUS ADENOCARCINOMA             5              19
D110V5, multiclass
    clus
vv   INHBA MUTATED INHBA WILD-TYPE
  T1             0               4
  T2             0              33
  T3             5              98
  T4             2              12
D110V6, multiclass
    clus
vv   INHBA MUTATED INHBA WILD-TYPE
  N0             3              88
  N1             2              28
  N2             2              32
D110V7, multiclass
     clus
vv    INHBA MUTATED INHBA WILD-TYPE
  M0              7             123
  M1              0              21
  M1A             0               1
D110V8, multiclass
     clus
vv    INHBA MUTATED INHBA WILD-TYPE
  I               0              30
  II              3              54
  III             4              40
  IV              0              21

Clustering(111) Variable = PDZRN4 MUTATION ANALYSIS
D111V1, survival
                  sevent
clus2               0  1
  PDZRN4 MUTATED    6  1
  PDZRN4 WILD-TYPE 62 10
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
               7               72 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
               1               10 
$`PDZRN4 MUTATED`
TCGA-A6-2672 TCGA-AA-3555 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-A00A TCGA-AA-A00N 
       16.54         0.99         0.99         1.02        18.02         4.01 
TCGA-AA-A010 
       20.98 

$`PDZRN4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E 
        0.99         1.02         0.99        13.94        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
            0.99             0.92 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
           20.98            51.95 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
            4.01            12.00 
[1] "1.0 - 21.0 (4.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
[1] "hr=" "1.3"
D111V2, continuous
D111V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDZRN4 MUTATED      8    4
  PDZRN4 WILD-TYPE   69   74
        clus
vv       PDZRN4 MUTATED PDZRN4 WILD-TYPE
  FEMALE              8               69
  MALE                4               74
D111V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDZRN4 MUTATED      6    6
  PDZRN4 WILD-TYPE  122   18
                               clus
vv                              PDZRN4 MUTATED PDZRN4 WILD-TYPE
  COLON ADENOCARCINOMA                       6              122
  COLON MUCINOUS ADENOCARCINOMA              6               18
D111V5, multiclass
    clus
vv   PDZRN4 MUTATED PDZRN4 WILD-TYPE
  T1              0                4
  T2              2               31
  T3              7               96
  T4              3               11
D111V6, multiclass
    clus
vv   PDZRN4 MUTATED PDZRN4 WILD-TYPE
  N0              8               83
  N1              3               27
  N2              1               33
D111V7, multiclass
     clus
vv    PDZRN4 MUTATED PDZRN4 WILD-TYPE
  M0              11              119
  M1               1               20
  M1A              0                1
D111V8, multiclass
     clus
vv    PDZRN4 MUTATED PDZRN4 WILD-TYPE
  I                2               28
  II               6               51
  III              3               41
  IV               1               20

Clustering(112) Variable = SPATA17 MUTATION ANALYSIS
D112V1, survival
                   sevent
clus2                0  1
  SPATA17 MUTATED    3  1
  SPATA17 WILD-TYPE 65 10
  SPATA17 MUTATED SPATA17 WILD-TYPE 
                4                75 
  SPATA17 MUTATED SPATA17 WILD-TYPE 
                1                10 
$`SPATA17 MUTATED`
TCGA-A6-2676 TCGA-AA-3947 TCGA-AA-A00J TCGA-AA-A00N 
       14.70         0.99        18.02         4.01 

$`SPATA17 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        34.03        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  SPATA17 MUTATED SPATA17 WILD-TYPE 
             0.99              0.92 
  SPATA17 MUTATED SPATA17 WILD-TYPE 
            18.02             51.95 
  SPATA17 MUTATED SPATA17 WILD-TYPE 
            9.355            12.000 
[1] "1.0 - 18.0 (9.4)"  "0.9 - 52.0 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SPATA17 WILD-TYPE"   "SPATA17 MUTATED" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" "SPATA17 WILD-TYPE" 
[1] "hr=" "2.3"
D112V2, continuous
D112V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPATA17 MUTATED      5    2
  SPATA17 WILD-TYPE   72   76
        clus
vv       SPATA17 MUTATED SPATA17 WILD-TYPE
  FEMALE               5                72
  MALE                 2                76
D112V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPATA17 MUTATED      3    4
  SPATA17 WILD-TYPE  125   20
                               clus
vv                              SPATA17 MUTATED SPATA17 WILD-TYPE
  COLON ADENOCARCINOMA                        3               125
  COLON MUCINOUS ADENOCARCINOMA               4                20
D112V5, multiclass
    clus
vv   SPATA17 MUTATED SPATA17 WILD-TYPE
  T1               0                 4
  T2               1                32
  T3               2               101
  T4               3                11
D112V6, multiclass
    clus
vv   SPATA17 MUTATED SPATA17 WILD-TYPE
  N0               6                85
  N1               1                29
  N2               0                34
D112V7, multiclass
     clus
vv    SPATA17 MUTATED SPATA17 WILD-TYPE
  M0                7               123
  M1                0                21
  M1A               0                 1
D112V8, multiclass
     clus
vv    SPATA17 MUTATED SPATA17 WILD-TYPE
  I                 1                29
  II                5                52
  III               1                43
  IV                0                21

Clustering(113) Variable = COL1A2 MUTATION ANALYSIS
D113V1, survival
                  sevent
clus2               0  1
  COL1A2 MUTATED    9  0
  COL1A2 WILD-TYPE 59 11
  COL1A2 MUTATED COL1A2 WILD-TYPE 
               9               70 
  COL1A2 MUTATED COL1A2 WILD-TYPE 
               0               11 
$`COL1A2 MUTATED`
TCGA-A6-2672 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3837 TCGA-AA-3877 TCGA-AA-3966 
       16.54         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00J 
        1.02        30.02        18.02 

$`COL1A2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       13.94        18.02        19.00        34.03        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  COL1A2 MUTATED COL1A2 WILD-TYPE 
            0.99             0.92 
  COL1A2 MUTATED COL1A2 WILD-TYPE 
           30.02            51.95 
  COL1A2 MUTATED COL1A2 WILD-TYPE 
            1.02            12.51 
[1] "1.0 - 30.0 (1.0)"  "0.9 - 52.0 (12.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL1A2 WILD-TYPE"   "COL1A2 MUTATED" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "COL1A2 MUTATED" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE"   "COL1A2 MUTATED" "COL1A2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL1A2 WILD-TYPE"   "COL1A2 MUTATED" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE"   "COL1A2 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL1A2 WILD-TYPE"   "COL1A2 MUTATED" "COL1A2 WILD-TYPE"   "COL1A2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "COL1A2 MUTATED" "COL1A2 WILD-TYPE"   "COL1A2 MUTATED" "COL1A2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL1A2 WILD-TYPE"   "COL1A2 MUTATED" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "COL1A2 MUTATED" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE"   "COL1A2 MUTATED" "COL1A2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL1A2 WILD-TYPE"   "COL1A2 MUTATED" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE"   "COL1A2 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL1A2 WILD-TYPE"   "COL1A2 MUTATED" "COL1A2 WILD-TYPE"   "COL1A2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "COL1A2 MUTATED" "COL1A2 WILD-TYPE"   "COL1A2 MUTATED" "COL1A2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL1A2 WILD-TYPE"   "COL1A2 MUTATED" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "COL1A2 MUTATED" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE"   "COL1A2 MUTATED" "COL1A2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL1A2 WILD-TYPE"   "COL1A2 MUTATED" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE"   "COL1A2 MUTATED" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL1A2 WILD-TYPE"   "COL1A2 MUTATED" "COL1A2 WILD-TYPE"   "COL1A2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "COL1A2 MUTATED" "COL1A2 WILD-TYPE"   "COL1A2 MUTATED" "COL1A2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" "COL1A2 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D113V2, continuous
D113V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL1A2 MUTATED      6    9
  COL1A2 WILD-TYPE   71   69
        clus
vv       COL1A2 MUTATED COL1A2 WILD-TYPE
  FEMALE              6               71
  MALE                9               69
D113V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL1A2 MUTATED      9    6
  COL1A2 WILD-TYPE  119   18
                               clus
vv                              COL1A2 MUTATED COL1A2 WILD-TYPE
  COLON ADENOCARCINOMA                       9              119
  COLON MUCINOUS ADENOCARCINOMA              6               18
D113V5, multiclass
    clus
vv   COL1A2 MUTATED COL1A2 WILD-TYPE
  T1              1                3
  T2              1               32
  T3             12               91
  T4              1               13
D113V6, multiclass
    clus
vv   COL1A2 MUTATED COL1A2 WILD-TYPE
  N0             12               79
  N1              3               27
  N2              0               34
D113V7, multiclass
     clus
vv    COL1A2 MUTATED COL1A2 WILD-TYPE
  M0              14              116
  M1               0               21
  M1A              0                1
D113V8, multiclass
     clus
vv    COL1A2 MUTATED COL1A2 WILD-TYPE
  I                1               29
  II              10               47
  III              3               41
  IV               0               21

Clustering(114) Variable = DSEL MUTATION ANALYSIS
D114V1, survival
                sevent
clus2             0  1
  DSEL MUTATED    6  1
  DSEL WILD-TYPE 62 10
  DSEL MUTATED DSEL WILD-TYPE 
             7             72 
  DSEL MUTATED DSEL WILD-TYPE 
             1             10 
$`DSEL MUTATED`
TCGA-A6-2676 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
       14.70         0.99         0.99         1.02         4.01        20.98 
TCGA-AA-A01I 
       12.00 

$`DSEL WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
        0.99        13.02        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  DSEL MUTATED DSEL WILD-TYPE 
          0.99           0.92 
  DSEL MUTATED DSEL WILD-TYPE 
         20.98          51.95 
  DSEL MUTATED DSEL WILD-TYPE 
          4.01          12.51 
[1] "1.0 - 21.0 (4.0)"  "0.9 - 52.0 (12.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED"   "DSEL MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED"   "DSEL MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED"   "DSEL MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE"   "DSEL MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"DSEL WILD-TYPE"   "DSEL MUTATED" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"DSEL WILD-TYPE" "DSEL WILD-TYPE" "DSEL WILD-TYPE" 
[1] "hr=" "1.5"
D114V2, continuous
D114V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DSEL MUTATED      8    4
  DSEL WILD-TYPE   69   74
        clus
vv       DSEL MUTATED DSEL WILD-TYPE
  FEMALE            8             69
  MALE              4             74
D114V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DSEL MUTATED      8    4
  DSEL WILD-TYPE  120   20
                               clus
vv                              DSEL MUTATED DSEL WILD-TYPE
  COLON ADENOCARCINOMA                     8            120
  COLON MUCINOUS ADENOCARCINOMA            4             20
D114V5, multiclass
    clus
vv   DSEL MUTATED DSEL WILD-TYPE
  T1            0              4
  T2            2             31
  T3            6             97
  T4            3             11
D114V6, multiclass
    clus
vv   DSEL MUTATED DSEL WILD-TYPE
  N0            9             82
  N1            3             27
  N2            0             34
D114V7, multiclass
     clus
vv    DSEL MUTATED DSEL WILD-TYPE
  M0            10            120
  M1             1             20
  M1A            0              1
D114V8, multiclass
     clus
vv    DSEL MUTATED DSEL WILD-TYPE
  I              1             29
  II             7             50
  III            2             42
  IV             1             20

Clustering(115) Variable = RNF43 MUTATION ANALYSIS
D115V1, survival
                 sevent
clus2              0  1
  RNF43 MUTATED    8  1
  RNF43 WILD-TYPE 60 10
  RNF43 MUTATED RNF43 WILD-TYPE 
              9              70 
  RNF43 MUTATED RNF43 WILD-TYPE 
              1              10 
$`RNF43 MUTATED`
TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-A00K 
        1.02         0.99         1.02         0.99         0.99        18.02 
TCGA-AA-A010 TCGA-AA-A01I TCGA-AA-A01P 
       20.98        12.00        38.07 

$`RNF43 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       13.02        12.00        13.02         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  RNF43 MUTATED RNF43 WILD-TYPE 
           0.99            0.92 
  RNF43 MUTATED RNF43 WILD-TYPE 
          38.07           51.95 
  RNF43 MUTATED RNF43 WILD-TYPE 
           1.02           12.51 
[1] "1.0 - 38.1 (1.0)"  "0.9 - 52.0 (12.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RNF43 WILD-TYPE"   "RNF43 MUTATED"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RNF43 WILD-TYPE"   "RNF43 MUTATED"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RNF43 WILD-TYPE"   "RNF43 MUTATED"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RNF43 MUTATED" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RNF43 WILD-TYPE"   "RNF43 MUTATED" "RNF43 WILD-TYPE"   "RNF43 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"RNF43 WILD-TYPE" "RNF43 WILD-TYPE" "RNF43 WILD-TYPE" 
[1] "hr=" "1.1"
D115V2, continuous
D115V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RNF43 MUTATED      7    3
  RNF43 WILD-TYPE   70   75
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  FEMALE             7              70
  MALE               3              75
D115V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RNF43 MUTATED      8    2
  RNF43 WILD-TYPE  120   22
                               clus
vv                              RNF43 MUTATED RNF43 WILD-TYPE
  COLON ADENOCARCINOMA                      8             120
  COLON MUCINOUS ADENOCARCINOMA             2              22
D115V5, multiclass
    clus
vv   RNF43 MUTATED RNF43 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             7              96
  T4             2              12
D115V6, multiclass
    clus
vv   RNF43 MUTATED RNF43 WILD-TYPE
  N0             8              83
  N1             2              28
  N2             0              34
D115V7, multiclass
     clus
vv    RNF43 MUTATED RNF43 WILD-TYPE
  M0             10             120
  M1              0              21
  M1A             0               1
D115V8, multiclass
     clus
vv    RNF43 MUTATED RNF43 WILD-TYPE
  I               1              29
  II              7              50
  III             2              42
  IV              0              21

Clustering(116) Variable = IDH2 MUTATION ANALYSIS
D116V1, survival
                sevent
clus2             0  1
  IDH2 MUTATED    2  0
  IDH2 WILD-TYPE 66 11
  IDH2 MUTATED IDH2 WILD-TYPE 
             2             77 
  IDH2 MUTATED IDH2 WILD-TYPE 
             0             11 
$`IDH2 MUTATED`
TCGA-AA-3715 TCGA-AA-A01Z 
        0.99        20.98 

$`IDH2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 
       35.01         1.02        33.04        35.01        26.01        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  IDH2 MUTATED IDH2 WILD-TYPE 
          0.99           0.92 
  IDH2 MUTATED IDH2 WILD-TYPE 
         20.98          51.95 
  IDH2 MUTATED IDH2 WILD-TYPE 
        10.985         12.000 
[1] "1.0 - 21.0 (11.0)" "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE"   "IDH2 MUTATED" "IDH2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE"   "IDH2 MUTATED" "IDH2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE"   "IDH2 MUTATED" "IDH2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE"   "IDH2 MUTATED" "IDH2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE"   "IDH2 MUTATED" "IDH2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE"   "IDH2 MUTATED" "IDH2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
[1] "Remove cluster labels:" "IDH2 MUTATED"          
clus
  IDH2 MUTATED IDH2 WILD-TYPE 
             2             77 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3811     TCGA-AA-3818 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3846 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877     TCGA-AA-3939 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949     TCGA-AA-3952 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977     TCGA-AA-3986 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A01X     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AY-4070 
"IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" "IDH2 WILD-TYPE" 
    TCGA-AY-4071 
"IDH2 WILD-TYPE" 
D116V2, continuous
D116V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  IDH2 MUTATED      4    3
  IDH2 WILD-TYPE   73   75
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  FEMALE            4             73
  MALE              3             75
D116V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  IDH2 MUTATED      6    0
  IDH2 WILD-TYPE  122   24
                               clus
vv                              IDH2 MUTATED IDH2 WILD-TYPE
  COLON ADENOCARCINOMA                     6            122
  COLON MUCINOUS ADENOCARCINOMA            0             24
D116V5, multiclass
    clus
vv   IDH2 MUTATED IDH2 WILD-TYPE
  T1            0              4
  T2            1             32
  T3            4             99
  T4            2             12
D116V6, multiclass
    clus
vv   IDH2 MUTATED IDH2 WILD-TYPE
  N0            5             86
  N1            2             28
  N2            0             34
D116V7, multiclass
     clus
vv    IDH2 MUTATED IDH2 WILD-TYPE
  M0             6            124
  M1             1             20
  M1A            0              1
D116V8, multiclass
     clus
vv    IDH2 MUTATED IDH2 WILD-TYPE
  I              1             29
  II             4             53
  III            1             43
  IV             1             20

Clustering(117) Variable = RIMS2 MUTATION ANALYSIS
D117V1, survival
                 sevent
clus2              0  1
  RIMS2 MUTATED    3  2
  RIMS2 WILD-TYPE 65  9
  RIMS2 MUTATED RIMS2 WILD-TYPE 
              5              74 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
              2               9 
$`RIMS2 MUTATED`
TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A024 
        0.99         1.02         4.01        20.98        39.06 

$`RIMS2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        26.01        20.98        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  RIMS2 MUTATED RIMS2 WILD-TYPE 
           0.99            0.92 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
          39.06           51.95 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
           4.01           12.00 
[1] "1.0 - 39.1 (4.0)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
[1] "hr=" "2.5"
D117V2, continuous
D117V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED      7    5
  RIMS2 WILD-TYPE   70   73
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  FEMALE             7              70
  MALE               5              73
D117V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED      8    4
  RIMS2 WILD-TYPE  120   20
                               clus
vv                              RIMS2 MUTATED RIMS2 WILD-TYPE
  COLON ADENOCARCINOMA                      8             120
  COLON MUCINOUS ADENOCARCINOMA             4              20
D117V5, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  T1             0               4
  T2             2              31
  T3             7              96
  T4             3              11
D117V6, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  N0             8              83
  N1             2              28
  N2             2              32
D117V7, multiclass
     clus
vv    RIMS2 MUTATED RIMS2 WILD-TYPE
  M0              9             121
  M1              2              19
  M1A             0               1
D117V8, multiclass
     clus
vv    RIMS2 MUTATED RIMS2 WILD-TYPE
  I               1              29
  II              6              51
  III             2              42
  IV              2              19

Clustering(118) Variable = SLC16A7 MUTATION ANALYSIS
D118V1, survival
                   sevent
clus2                0  1
  SLC16A7 MUTATED    4  1
  SLC16A7 WILD-TYPE 64 10
  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
                5                74 
  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
                1                10 
$`SLC16A7 MUTATED`
TCGA-AA-3555 TCGA-AA-3949 TCGA-AA-3975 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99         0.99         4.01        20.98 

$`SLC16A7 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
             0.99              0.92 
  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
            20.98             51.95 
  SLC16A7 MUTATED SLC16A7 WILD-TYPE 
             0.99             12.51 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (12.5)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLC16A7 WILD-TYPE"   "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLC16A7 MUTATED" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" "SLC16A7 WILD-TYPE" 
[1] "hr=" "2.8"
D118V2, continuous
D118V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC16A7 MUTATED      4    4
  SLC16A7 WILD-TYPE   73   74
        clus
vv       SLC16A7 MUTATED SLC16A7 WILD-TYPE
  FEMALE               4                73
  MALE                 4                74
D118V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC16A7 MUTATED      5    3
  SLC16A7 WILD-TYPE  123   21
                               clus
vv                              SLC16A7 MUTATED SLC16A7 WILD-TYPE
  COLON ADENOCARCINOMA                        5               123
  COLON MUCINOUS ADENOCARCINOMA               3                21
D118V5, multiclass
    clus
vv   SLC16A7 MUTATED SLC16A7 WILD-TYPE
  T1               0                 4
  T2               1                32
  T3               5                98
  T4               2                12
D118V6, multiclass
    clus
vv   SLC16A7 MUTATED SLC16A7 WILD-TYPE
  N0               5                86
  N1               2                28
  N2               1                33
D118V7, multiclass
     clus
vv    SLC16A7 MUTATED SLC16A7 WILD-TYPE
  M0                8               122
  M1                0                21
  M1A               0                 1
D118V8, multiclass
     clus
vv    SLC16A7 MUTATED SLC16A7 WILD-TYPE
  I                 1                29
  II                4                53
  III               3                41
  IV                0                21

Clustering(119) Variable = LRRIQ3 MUTATION ANALYSIS
D119V1, survival
                  sevent
clus2               0  1
  LRRIQ3 MUTATED    3  0
  LRRIQ3 WILD-TYPE 65 11
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
               3               76 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
               0               11 
$`LRRIQ3 MUTATED`
TCGA-AA-3811 TCGA-AA-3966 TCGA-AA-A010 
        0.99         1.02        20.98 

$`LRRIQ3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
            0.99             0.92 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
           20.98            51.95 
  LRRIQ3 MUTATED LRRIQ3 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"LRRIQ3 WILD-TYPE"   "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "LRRIQ3 MUTATED" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" "LRRIQ3 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D119V2, continuous
D119V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ3 MUTATED      6    1
  LRRIQ3 WILD-TYPE   71   77
        clus
vv       LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  FEMALE              6               71
  MALE                1               77
D119V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRIQ3 MUTATED      6    1
  LRRIQ3 WILD-TYPE  122   23
                               clus
vv                              LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  COLON ADENOCARCINOMA                       6              122
  COLON MUCINOUS ADENOCARCINOMA              1               23
D119V5, multiclass
    clus
vv   LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  T1              0                4
  T2              1               32
  T3              4               99
  T4              2               12
D119V6, multiclass
    clus
vv   LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  N0              3               88
  N1              2               28
  N2              2               32
D119V7, multiclass
     clus
vv    LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  M0               6              124
  M1               1               20
  M1A              0                1
D119V8, multiclass
     clus
vv    LRRIQ3 MUTATED LRRIQ3 WILD-TYPE
  I                1               29
  II               2               55
  III              3               41
  IV               1               20

Clustering(120) Variable = ABCA12 MUTATION ANALYSIS
D120V1, survival
                  sevent
clus2               0  1
  ABCA12 MUTATED   11  1
  ABCA12 WILD-TYPE 57 10
  ABCA12 MUTATED ABCA12 WILD-TYPE 
              12               67 
  ABCA12 MUTATED ABCA12 WILD-TYPE 
               1               10 
$`ABCA12 MUTATED`
TCGA-AA-3555 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00J 
        0.99         1.02         1.02        13.94        18.02        18.02 
TCGA-AA-A00N TCGA-AA-A00U TCGA-AA-A010 TCGA-AA-A01X TCGA-AA-A02O TCGA-AA-A02Y 
        4.01        17.00        20.98        26.01         0.92        39.95 

$`ABCA12 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A00D TCGA-AA-A00E 
        0.99         1.02         0.99         0.99        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       34.03        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       33.04        35.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        2.01         5.03        40.96        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  ABCA12 MUTATED ABCA12 WILD-TYPE 
            0.92             0.92 
  ABCA12 MUTATED ABCA12 WILD-TYPE 
           39.95            51.95 
  ABCA12 MUTATED ABCA12 WILD-TYPE 
           15.47            10.92 
[1] "0.9 - 40.0 (15.5)" "0.9 - 52.0 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
  "ABCA12 MUTATED" "ABCA12 WILD-TYPE"   "ABCA12 MUTATED" "ABCA12 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" "ABCA12 WILD-TYPE" 
[1] "hr=" "2.1"
D120V2, continuous
D120V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ABCA12 MUTATED      7   11
  ABCA12 WILD-TYPE   70   67
        clus
vv       ABCA12 MUTATED ABCA12 WILD-TYPE
  FEMALE              7               70
  MALE               11               67
D120V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ABCA12 MUTATED     13    5
  ABCA12 WILD-TYPE  115   19
                               clus
vv                              ABCA12 MUTATED ABCA12 WILD-TYPE
  COLON ADENOCARCINOMA                      13              115
  COLON MUCINOUS ADENOCARCINOMA              5               19
D120V5, multiclass
    clus
vv   ABCA12 MUTATED ABCA12 WILD-TYPE
  T1              0                4
  T2              5               28
  T3             10               93
  T4              3               11
D120V6, multiclass
    clus
vv   ABCA12 MUTATED ABCA12 WILD-TYPE
  N0             14               77
  N1              3               27
  N2              1               33
D120V7, multiclass
     clus
vv    ABCA12 MUTATED ABCA12 WILD-TYPE
  M0              17              113
  M1               0               21
  M1A              0                1
D120V8, multiclass
     clus
vv    ABCA12 MUTATED ABCA12 WILD-TYPE
  I                3               27
  II              10               47
  III              4               40
  IV               0               21

Clustering(121) Variable = COL6A6 MUTATION ANALYSIS
D121V1, survival
                  sevent
clus2               0  1
  COL6A6 MUTATED    8  1
  COL6A6 WILD-TYPE 60 10
  COL6A6 MUTATED COL6A6 WILD-TYPE 
               9               70 
  COL6A6 MUTATED COL6A6 WILD-TYPE 
               1               10 
$`COL6A6 MUTATED`
TCGA-A6-3808 TCGA-AA-3715 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A00N 
        9.14         0.99         0.99         1.02         0.99         4.01 
TCGA-AA-A010 TCGA-AA-A029 TCGA-AA-A02Y 
       20.98        51.95        39.95 

$`COL6A6 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       39.06        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  COL6A6 MUTATED COL6A6 WILD-TYPE 
            0.99             0.92 
  COL6A6 MUTATED COL6A6 WILD-TYPE 
           51.95            40.96 
  COL6A6 MUTATED COL6A6 WILD-TYPE 
            4.01            12.51 
[1] "1.0 - 52.0 (4.0)"  "0.9 - 41.0 (12.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
[1] "hr=" "1.7"
D121V2, continuous
D121V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL6A6 MUTATED      5    9
  COL6A6 WILD-TYPE   72   69
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  FEMALE              5               72
  MALE                9               69
D121V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL6A6 MUTATED     11    3
  COL6A6 WILD-TYPE  117   21
                               clus
vv                              COL6A6 MUTATED COL6A6 WILD-TYPE
  COLON ADENOCARCINOMA                      11              117
  COLON MUCINOUS ADENOCARCINOMA              3               21
D121V5, multiclass
    clus
vv   COL6A6 MUTATED COL6A6 WILD-TYPE
  T1              0                4
  T2              4               29
  T3              7               96
  T4              3               11
D121V6, multiclass
    clus
vv   COL6A6 MUTATED COL6A6 WILD-TYPE
  N0             13               78
  N1              1               29
  N2              0               34
D121V7, multiclass
     clus
vv    COL6A6 MUTATED COL6A6 WILD-TYPE
  M0              13              117
  M1               0               21
  M1A              0                1
D121V8, multiclass
     clus
vv    COL6A6 MUTATED COL6A6 WILD-TYPE
  I                3               27
  II               9               48
  III              1               43
  IV               0               21

Clustering(122) Variable = ANGPTL5 MUTATION ANALYSIS
D122V1, survival
                   sevent
clus2                0  1
  ANGPTL5 MUTATED    5  1
  ANGPTL5 WILD-TYPE 63 10
  ANGPTL5 MUTATED ANGPTL5 WILD-TYPE 
                6                73 
  ANGPTL5 MUTATED ANGPTL5 WILD-TYPE 
                1                10 
$`ANGPTL5 MUTATED`
TCGA-A6-3810 TCGA-AA-3811 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A01P 
        8.09         0.99         0.99         1.02        18.02        38.07 

$`ANGPTL5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       30.02        34.03        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 
       27.02         0.99        17.00        14.99        21.99        20.98 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  ANGPTL5 MUTATED ANGPTL5 WILD-TYPE 
             0.99              0.92 
  ANGPTL5 MUTATED ANGPTL5 WILD-TYPE 
            38.07             51.95 
  ANGPTL5 MUTATED ANGPTL5 WILD-TYPE 
            4.555            12.000 
[1] "1.0 - 38.1 (4.6)"  "0.9 - 52.0 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE"   "ANGPTL5 MUTATED" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" "ANGPTL5 WILD-TYPE" 
[1] "hr=" "1.3"
D122V2, continuous
D122V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANGPTL5 MUTATED      4    3
  ANGPTL5 WILD-TYPE   73   75
        clus
vv       ANGPTL5 MUTATED ANGPTL5 WILD-TYPE
  FEMALE               4                73
  MALE                 3                75
D122V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ANGPTL5 MUTATED      5    2
  ANGPTL5 WILD-TYPE  123   22
                               clus
vv                              ANGPTL5 MUTATED ANGPTL5 WILD-TYPE
  COLON ADENOCARCINOMA                        5               123
  COLON MUCINOUS ADENOCARCINOMA               2                22
D122V5, multiclass
    clus
vv   ANGPTL5 MUTATED ANGPTL5 WILD-TYPE
  T1               0                 4
  T2               1                32
  T3               4                99
  T4               2                12
D122V6, multiclass
    clus
vv   ANGPTL5 MUTATED ANGPTL5 WILD-TYPE
  N0               4                87
  N1               2                28
  N2               1                33
D122V7, multiclass
     clus
vv    ANGPTL5 MUTATED ANGPTL5 WILD-TYPE
  M0                6               124
  M1                0                21
  M1A               0                 1
D122V8, multiclass
     clus
vv    ANGPTL5 MUTATED ANGPTL5 WILD-TYPE
  I                 0                30
  II                3                54
  III               3                41
  IV                0                21

Clustering(123) Variable = TRPC4 MUTATION ANALYSIS
D123V1, survival
                 sevent
clus2              0  1
  TRPC4 MUTATED    6  1
  TRPC4 WILD-TYPE 62 10
  TRPC4 MUTATED TRPC4 WILD-TYPE 
              7              72 
  TRPC4 MUTATED TRPC4 WILD-TYPE 
              1              10 
$`TRPC4 MUTATED`
TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-3966 TCGA-AA-A00N 
        0.99         1.02         0.99         0.99         1.02         4.01 
TCGA-AA-A010 
       20.98 

$`TRPC4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  TRPC4 MUTATED TRPC4 WILD-TYPE 
           0.99            0.92 
  TRPC4 MUTATED TRPC4 WILD-TYPE 
          20.98           51.95 
  TRPC4 MUTATED TRPC4 WILD-TYPE 
           1.02           13.02 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE"   "TRPC4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE"   "TRPC4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE"   "TRPC4 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TRPC4 WILD-TYPE"   "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "TRPC4 MUTATED" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" "TRPC4 WILD-TYPE" 
[1] "hr=" "2.1"
D123V2, continuous
D123V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPC4 MUTATED      7    5
  TRPC4 WILD-TYPE   70   73
        clus
vv       TRPC4 MUTATED TRPC4 WILD-TYPE
  FEMALE             7              70
  MALE               5              73
D123V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPC4 MUTATED      7    5
  TRPC4 WILD-TYPE  121   19
                               clus
vv                              TRPC4 MUTATED TRPC4 WILD-TYPE
  COLON ADENOCARCINOMA                      7             121
  COLON MUCINOUS ADENOCARCINOMA             5              19
D123V5, multiclass
    clus
vv   TRPC4 MUTATED TRPC4 WILD-TYPE
  T1             1               3
  T2             0              33
  T3             8              95
  T4             3              11
D123V6, multiclass
    clus
vv   TRPC4 MUTATED TRPC4 WILD-TYPE
  N0             8              83
  N1             4              26
  N2             0              34
D123V7, multiclass
     clus
vv    TRPC4 MUTATED TRPC4 WILD-TYPE
  M0             11             119
  M1              1              20
  M1A             0               1
D123V8, multiclass
     clus
vv    TRPC4 MUTATED TRPC4 WILD-TYPE
  I               1              29
  II              7              50
  III             3              41
  IV              1              20

Clustering(124) Variable = CNTNAP4 MUTATION ANALYSIS
D124V1, survival
                   sevent
clus2                0  1
  CNTNAP4 MUTATED    3  2
  CNTNAP4 WILD-TYPE 65  9
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
                5                74 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
                2                 9 
$`CNTNAP4 MUTATED`
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A010 TCGA-AA-A024 
        1.02         4.01        27.02        20.98        39.06 

$`CNTNAP4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       18.02        17.00        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        26.01        20.98        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
             1.02              0.92 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
            39.06             51.95 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
            20.98             11.46 
[1] "1.0 - 39.1 (21.0)" "0.9 - 52.0 (11.5)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
[1] "hr=" "2"  
D124V2, continuous
D124V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CNTNAP4 MUTATED      5    5
  CNTNAP4 WILD-TYPE   72   73
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  FEMALE               5                72
  MALE                 5                73
D124V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CNTNAP4 MUTATED      7    3
  CNTNAP4 WILD-TYPE  121   21
                               clus
vv                              CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  COLON ADENOCARCINOMA                        7               121
  COLON MUCINOUS ADENOCARCINOMA               3                21
D124V5, multiclass
    clus
vv   CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  T1               0                 4
  T2               1                32
  T3               6                97
  T4               3                11
D124V6, multiclass
    clus
vv   CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  N0               9                82
  N1               0                30
  N2               1                33
D124V7, multiclass
     clus
vv    CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  M0                9               121
  M1                0                21
  M1A               0                 1
D124V8, multiclass
     clus
vv    CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  I                 0                30
  II                8                49
  III               1                43
  IV                0                21

Clustering(125) Variable = CDH18 MUTATION ANALYSIS
D125V1, survival
                 sevent
clus2              0  1
  CDH18 MUTATED    6  2
  CDH18 WILD-TYPE 62  9
  CDH18 MUTATED CDH18 WILD-TYPE 
              8              71 
  CDH18 MUTATED CDH18 WILD-TYPE 
              2               9 
$`CDH18 MUTATED`
TCGA-A6-2672 TCGA-A6-3807 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-A00N 
       16.54        10.92         1.02         0.99         0.99         4.01 
TCGA-AA-A010 TCGA-AA-A02J 
       20.98         5.03 

$`CDH18 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q 
       34.03        18.02        18.02        17.00        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02O TCGA-AA-A02W 
       39.06        51.95        39.95         2.01         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  CDH18 MUTATED CDH18 WILD-TYPE 
           0.99            0.92 
  CDH18 MUTATED CDH18 WILD-TYPE 
          20.98           51.95 
  CDH18 MUTATED CDH18 WILD-TYPE 
           4.52           13.02 
[1] "1.0 - 21.0 (4.5)"  "0.9 - 52.0 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CDH18 WILD-TYPE"   "CDH18 MUTATED"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CDH18 WILD-TYPE"   "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CDH18 MUTATED" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE"   "CDH18 MUTATED" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CDH18 WILD-TYPE" "CDH18 WILD-TYPE" "CDH18 WILD-TYPE" 
[1] "hr=" "2.8"
D125V2, continuous
D125V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH18 MUTATED      8    2
  CDH18 WILD-TYPE   69   76
        clus
vv       CDH18 MUTATED CDH18 WILD-TYPE
  FEMALE             8              69
  MALE               2              76
D125V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH18 MUTATED      8    2
  CDH18 WILD-TYPE  120   22
                               clus
vv                              CDH18 MUTATED CDH18 WILD-TYPE
  COLON ADENOCARCINOMA                      8             120
  COLON MUCINOUS ADENOCARCINOMA             2              22
D125V5, multiclass
    clus
vv   CDH18 MUTATED CDH18 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             6              97
  T4             3              11
D125V6, multiclass
    clus
vv   CDH18 MUTATED CDH18 WILD-TYPE
  N0             8              83
  N1             1              29
  N2             1              33
D125V7, multiclass
     clus
vv    CDH18 MUTATED CDH18 WILD-TYPE
  M0              9             121
  M1              1              20
  M1A             0               1
D125V8, multiclass
     clus
vv    CDH18 MUTATED CDH18 WILD-TYPE
  I               1              29
  II              6              51
  III             2              42
  IV              1              20

Clustering(126) Variable = UBE2NL MUTATION ANALYSIS
D126V1, survival
                  sevent
clus2               0  1
  UBE2NL MUTATED    4  0
  UBE2NL WILD-TYPE 64 11
  UBE2NL MUTATED UBE2NL WILD-TYPE 
               4               75 
  UBE2NL MUTATED UBE2NL WILD-TYPE 
               0               11 
$`UBE2NL MUTATED`
TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A010 TCGA-AA-A017 
        0.99         1.02        20.98        15.02 

$`UBE2NL WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       14.99        21.99         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  UBE2NL MUTATED UBE2NL WILD-TYPE 
            0.99             0.92 
  UBE2NL MUTATED UBE2NL WILD-TYPE 
           20.98            51.95 
  UBE2NL MUTATED UBE2NL WILD-TYPE 
            8.02            12.00 
[1] "1.0 - 21.0 (8.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UBE2NL MUTATED"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UBE2NL MUTATED"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE"   "UBE2NL MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UBE2NL MUTATED"   "UBE2NL MUTATED" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" "UBE2NL WILD-TYPE" 
[1] "hr="     "2.6e+07"
D126V2, continuous
D126V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UBE2NL MUTATED      4    1
  UBE2NL WILD-TYPE   73   77
        clus
vv       UBE2NL MUTATED UBE2NL WILD-TYPE
  FEMALE              4               73
  MALE                1               77
D126V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UBE2NL MUTATED      4    1
  UBE2NL WILD-TYPE  124   23
                               clus
vv                              UBE2NL MUTATED UBE2NL WILD-TYPE
  COLON ADENOCARCINOMA                       4              124
  COLON MUCINOUS ADENOCARCINOMA              1               23
D126V5, multiclass
    clus
vv   UBE2NL MUTATED UBE2NL WILD-TYPE
  T1              0                4
  T2              1               32
  T3              2              101
  T4              2               12
D126V6, multiclass
    clus
vv   UBE2NL MUTATED UBE2NL WILD-TYPE
  N0              4               87
  N1              1               29
  N2              0               34
D126V7, multiclass
     clus
vv    UBE2NL MUTATED UBE2NL WILD-TYPE
  M0               4              126
  M1               0               21
  M1A              0                1
D126V8, multiclass
     clus
vv    UBE2NL MUTATED UBE2NL WILD-TYPE
  I                0               30
  II               3               54
  III              1               43
  IV               0               21

Clustering(127) Variable = CD1E MUTATION ANALYSIS
D127V1, survival
                sevent
clus2             0  1
  CD1E MUTATED    1  0
  CD1E WILD-TYPE 67 11
  CD1E MUTATED CD1E WILD-TYPE 
             1             78 
  CD1E MUTATED CD1E WILD-TYPE 
             0             11 
$`CD1E MUTATED`
TCGA-AA-A01I 
          12 

$`CD1E WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
        0.99        13.02        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  CD1E MUTATED CD1E WILD-TYPE 
         12.00           0.92 
  CD1E MUTATED CD1E WILD-TYPE 
         12.00          51.95 
  CD1E MUTATED CD1E WILD-TYPE 
         12.00          11.46 
[1] "12.0 - 12.0 (12.0)" "0.9 - 52.0 (11.5)" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CD1E WILD-TYPE"   "CD1E MUTATED" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CD1E WILD-TYPE"   "CD1E MUTATED" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CD1E WILD-TYPE"   "CD1E MUTATED" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
[1] "Remove cluster labels:" "CD1E MUTATED"          
clus
  CD1E MUTATED CD1E WILD-TYPE 
             1             78 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024     TCGA-AA-A029 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" "CD1E WILD-TYPE" 
    TCGA-AY-4070     TCGA-AY-4071 
"CD1E WILD-TYPE" "CD1E WILD-TYPE" 
D127V2, continuous
D127V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD1E MUTATED      3    2
  CD1E WILD-TYPE   74   76
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  FEMALE            3             74
  MALE              2             76
D127V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD1E MUTATED      4    0
  CD1E WILD-TYPE  124   24
                               clus
vv                              CD1E MUTATED CD1E WILD-TYPE
  COLON ADENOCARCINOMA                     4            124
  COLON MUCINOUS ADENOCARCINOMA            0             24
D127V5, multiclass
    clus
vv   CD1E MUTATED CD1E WILD-TYPE
  T1            0              4
  T2            1             32
  T3            4             99
  T4            0             14
D127V6, multiclass
    clus
vv   CD1E MUTATED CD1E WILD-TYPE
  N0            3             88
  N1            0             30
  N2            2             32
D127V7, multiclass
     clus
vv    CD1E MUTATED CD1E WILD-TYPE
  M0             3            127
  M1             2             19
  M1A            0              1
D127V8, multiclass
     clus
vv    CD1E MUTATED CD1E WILD-TYPE
  I              1             29
  II             2             55
  III            0             44
  IV             2             19

Clustering(128) Variable = OLFML1 MUTATION ANALYSIS
D128V1, survival
                  sevent
clus2               0  1
  OLFML1 MUTATED    4  0
  OLFML1 WILD-TYPE 64 11
  OLFML1 MUTATED OLFML1 WILD-TYPE 
               4               75 
  OLFML1 MUTATED OLFML1 WILD-TYPE 
               0               11 
$`OLFML1 MUTATED`
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3966 TCGA-AA-A010 
        1.02         0.99         1.02        20.98 

$`OLFML1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  OLFML1 MUTATED OLFML1 WILD-TYPE 
            0.99             0.92 
  OLFML1 MUTATED OLFML1 WILD-TYPE 
           20.98            51.95 
  OLFML1 MUTATED OLFML1 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OLFML1 WILD-TYPE"   "OLFML1 MUTATED"   "OLFML1 MUTATED" "OLFML1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OLFML1 WILD-TYPE"   "OLFML1 MUTATED" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OLFML1 MUTATED" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OLFML1 WILD-TYPE"   "OLFML1 MUTATED"   "OLFML1 MUTATED" "OLFML1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OLFML1 WILD-TYPE"   "OLFML1 MUTATED" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OLFML1 MUTATED" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OLFML1 WILD-TYPE"   "OLFML1 MUTATED"   "OLFML1 MUTATED" "OLFML1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OLFML1 WILD-TYPE"   "OLFML1 MUTATED" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OLFML1 MUTATED" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" "OLFML1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D128V2, continuous
D128V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OLFML1 MUTATED      5    2
  OLFML1 WILD-TYPE   72   76
        clus
vv       OLFML1 MUTATED OLFML1 WILD-TYPE
  FEMALE              5               72
  MALE                2               76
D128V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OLFML1 MUTATED      6    1
  OLFML1 WILD-TYPE  122   23
                               clus
vv                              OLFML1 MUTATED OLFML1 WILD-TYPE
  COLON ADENOCARCINOMA                       6              122
  COLON MUCINOUS ADENOCARCINOMA              1               23
D128V5, multiclass
    clus
vv   OLFML1 MUTATED OLFML1 WILD-TYPE
  T1              1                3
  T2              0               33
  T3              5               98
  T4              1               13
D128V6, multiclass
    clus
vv   OLFML1 MUTATED OLFML1 WILD-TYPE
  N0              7               84
  N1              0               30
  N2              0               34
D128V7, multiclass
     clus
vv    OLFML1 MUTATED OLFML1 WILD-TYPE
  M0               7              123
  M1               0               21
  M1A              0                1
D128V8, multiclass
     clus
vv    OLFML1 MUTATED OLFML1 WILD-TYPE
  I                1               29
  II               6               51
  III              0               44
  IV               0               21

Clustering(129) Variable = OR10G9 MUTATION ANALYSIS
D129V1, survival
                  sevent
clus2               0  1
  OR10G9 MUTATED    3  1
  OR10G9 WILD-TYPE 65 10
  OR10G9 MUTATED OR10G9 WILD-TYPE 
               4               75 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
               1               10 
$`OR10G9 MUTATED`
TCGA-AA-3837 TCGA-AA-3947 TCGA-AA-A017 TCGA-AA-A03F 
        1.02         0.99        15.02        18.02 

$`OR10G9 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        20.98         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  OR10G9 MUTATED OR10G9 WILD-TYPE 
            0.99             0.92 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
           18.02            51.95 
  OR10G9 MUTATED OR10G9 WILD-TYPE 
            8.02            12.00 
[1] "1.0 - 18.0 (8.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR10G9 WILD-TYPE"   "OR10G9 MUTATED" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE"   "OR10G9 MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" "OR10G9 WILD-TYPE" 
[1] "hr=" "2.6"
D129V2, continuous
D129V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G9 MUTATED      4    1
  OR10G9 WILD-TYPE   73   77
        clus
vv       OR10G9 MUTATED OR10G9 WILD-TYPE
  FEMALE              4               73
  MALE                1               77
D129V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G9 MUTATED      1    4
  OR10G9 WILD-TYPE  127   20
                               clus
vv                              OR10G9 MUTATED OR10G9 WILD-TYPE
  COLON ADENOCARCINOMA                       1              127
  COLON MUCINOUS ADENOCARCINOMA              4               20
D129V5, multiclass
    clus
vv   OR10G9 MUTATED OR10G9 WILD-TYPE
  T1              0                4
  T2              1               32
  T3              3              100
  T4              1               13
D129V6, multiclass
    clus
vv   OR10G9 MUTATED OR10G9 WILD-TYPE
  N0              4               87
  N1              0               30
  N2              1               33
D129V7, multiclass
     clus
vv    OR10G9 MUTATED OR10G9 WILD-TYPE
  M0               5              125
  M1               0               21
  M1A              0                1
D129V8, multiclass
     clus
vv    OR10G9 MUTATED OR10G9 WILD-TYPE
  I                1               29
  II               3               54
  III              1               43
  IV               0               21

Clustering(130) Variable = ZNF429 MUTATION ANALYSIS
D130V1, survival
                  sevent
clus2               0  1
  ZNF429 MUTATED    5  1
  ZNF429 WILD-TYPE 63 10
  ZNF429 MUTATED ZNF429 WILD-TYPE 
               6               73 
  ZNF429 MUTATED ZNF429 WILD-TYPE 
               1               10 
$`ZNF429 MUTATED`
TCGA-AA-3685 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01V 
        0.99         0.99         1.02         4.01        20.98        35.01 

$`ZNF429 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         1.02         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X 
       38.07         1.02        35.01         1.02        33.04        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  ZNF429 MUTATED ZNF429 WILD-TYPE 
            0.99             0.92 
  ZNF429 MUTATED ZNF429 WILD-TYPE 
           35.01            51.95 
  ZNF429 MUTATED ZNF429 WILD-TYPE 
           2.515           12.000 
[1] "1.0 - 35.0 (2.5)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE"   "ZNF429 MUTATED"   "ZNF429 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF429 WILD-TYPE"   "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE"   "ZNF429 MUTATED"   "ZNF429 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF429 WILD-TYPE"   "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE"   "ZNF429 MUTATED"   "ZNF429 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF429 WILD-TYPE"   "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
  "ZNF429 MUTATED" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" "ZNF429 WILD-TYPE" 
[1] "hr=" "1.7"
D130V2, continuous
D130V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF429 MUTATED      1    6
  ZNF429 WILD-TYPE   76   72
        clus
vv       ZNF429 MUTATED ZNF429 WILD-TYPE
  FEMALE              1               76
  MALE                6               72
D130V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF429 MUTATED      6    1
  ZNF429 WILD-TYPE  122   23
                               clus
vv                              ZNF429 MUTATED ZNF429 WILD-TYPE
  COLON ADENOCARCINOMA                       6              122
  COLON MUCINOUS ADENOCARCINOMA              1               23
D130V5, multiclass
    clus
vv   ZNF429 MUTATED ZNF429 WILD-TYPE
  T1              0                4
  T2              3               30
  T3              2              101
  T4              2               12
D130V6, multiclass
    clus
vv   ZNF429 MUTATED ZNF429 WILD-TYPE
  N0              6               85
  N1              1               29
  N2              0               34
D130V7, multiclass
     clus
vv    ZNF429 MUTATED ZNF429 WILD-TYPE
  M0               6              124
  M1               0               21
  M1A              0                1
D130V8, multiclass
     clus
vv    ZNF429 MUTATED ZNF429 WILD-TYPE
  I                2               28
  II               3               54
  III              1               43
  IV               0               21

Clustering(131) Variable = SAT1 MUTATION ANALYSIS
D131V1, survival
                sevent
clus2             0  1
  SAT1 MUTATED    2  0
  SAT1 WILD-TYPE 66 11
  SAT1 MUTATED SAT1 WILD-TYPE 
             2             77 
  SAT1 MUTATED SAT1 WILD-TYPE 
             0             11 
$`SAT1 MUTATED`
TCGA-AA-3811 TCGA-AA-3949 
        0.99         0.99 

$`SAT1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  SAT1 MUTATED SAT1 WILD-TYPE 
          0.99           0.92 
  SAT1 MUTATED SAT1 WILD-TYPE 
          0.99          51.95 
  SAT1 MUTATED SAT1 WILD-TYPE 
          0.99          12.00 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE"   "SAT1 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
[1] "Remove cluster labels:" "SAT1 MUTATED"          
clus
  SAT1 MUTATED SAT1 WILD-TYPE 
             2             77 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3818 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844     TCGA-AA-3846 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877     TCGA-AA-3939 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3952     TCGA-AA-3966 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-3975     TCGA-AA-3977     TCGA-AA-3986     TCGA-AA-A004 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E     TCGA-AA-A00F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L     TCGA-AA-A00N 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A01Z     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AY-4070 
"SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" "SAT1 WILD-TYPE" 
    TCGA-AY-4071 
"SAT1 WILD-TYPE" 
D131V2, continuous
D131V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SAT1 MUTATED      4    0
  SAT1 WILD-TYPE   73   78
        clus
vv       SAT1 MUTATED SAT1 WILD-TYPE
  FEMALE            4             73
  MALE              0             78
D131V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SAT1 MUTATED      3    1
  SAT1 WILD-TYPE  125   23
                               clus
vv                              SAT1 MUTATED SAT1 WILD-TYPE
  COLON ADENOCARCINOMA                     3            125
  COLON MUCINOUS ADENOCARCINOMA            1             23
D131V5, multiclass
    clus
vv   SAT1 MUTATED SAT1 WILD-TYPE
  T1            0              4
  T2            1             32
  T3            3            100
  T4            0             14
D131V6, multiclass
    clus
vv   SAT1 MUTATED SAT1 WILD-TYPE
  N0            2             89
  N1            1             29
  N2            1             33
D131V7, multiclass
     clus
vv    SAT1 MUTATED SAT1 WILD-TYPE
  M0             4            126
  M1             0             21
  M1A            0              1
D131V8, multiclass
     clus
vv    SAT1 MUTATED SAT1 WILD-TYPE
  I              1             29
  II             1             56
  III            2             42
  IV             0             21

Clustering(132) Variable = ZNF536 MUTATION ANALYSIS
D132V1, survival
                  sevent
clus2               0  1
  ZNF536 MUTATED    6  0
  ZNF536 WILD-TYPE 62 11
  ZNF536 MUTATED ZNF536 WILD-TYPE 
               6               73 
  ZNF536 MUTATED ZNF536 WILD-TYPE 
               0               11 
$`ZNF536 MUTATED`
TCGA-AA-3715 TCGA-AA-3854 TCGA-AA-3966 TCGA-AA-A00E TCGA-AA-A00K TCGA-AA-A01G 
        0.99         1.02         1.02        30.02        18.02        12.00 

$`ZNF536 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       19.00        34.03        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 
       27.02         0.99        17.00        14.99        21.99        20.98 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
       15.02         0.99        13.02        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  ZNF536 MUTATED ZNF536 WILD-TYPE 
            0.99             0.92 
  ZNF536 MUTATED ZNF536 WILD-TYPE 
           30.02            51.95 
  ZNF536 MUTATED ZNF536 WILD-TYPE 
            6.51            12.00 
[1] "1.0 - 30.0 (6.5)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE"   "ZNF536 MUTATED" "ZNF536 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE"   "ZNF536 MUTATED" "ZNF536 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF536 WILD-TYPE"   "ZNF536 MUTATED" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "ZNF536 MUTATED" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE"   "ZNF536 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
  "ZNF536 MUTATED" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE"   "ZNF536 MUTATED" "ZNF536 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE"   "ZNF536 MUTATED" "ZNF536 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF536 WILD-TYPE"   "ZNF536 MUTATED" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "ZNF536 MUTATED" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE"   "ZNF536 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
  "ZNF536 MUTATED" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE"   "ZNF536 MUTATED" "ZNF536 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE"   "ZNF536 MUTATED" "ZNF536 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF536 WILD-TYPE"   "ZNF536 MUTATED" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "ZNF536 MUTATED" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE"   "ZNF536 MUTATED" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
  "ZNF536 MUTATED" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" "ZNF536 WILD-TYPE" 
[1] "hr="     "7.5e+07"
D132V2, continuous
D132V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF536 MUTATED      5    8
  ZNF536 WILD-TYPE   72   70
        clus
vv       ZNF536 MUTATED ZNF536 WILD-TYPE
  FEMALE              5               72
  MALE                8               70
D132V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF536 MUTATED     10    3
  ZNF536 WILD-TYPE  118   21
                               clus
vv                              ZNF536 MUTATED ZNF536 WILD-TYPE
  COLON ADENOCARCINOMA                      10              118
  COLON MUCINOUS ADENOCARCINOMA              3               21
D132V5, multiclass
    clus
vv   ZNF536 MUTATED ZNF536 WILD-TYPE
  T1              0                4
  T2              3               30
  T3             10               93
  T4              0               14
D132V6, multiclass
    clus
vv   ZNF536 MUTATED ZNF536 WILD-TYPE
  N0             12               79
  N1              1               29
  N2              0               34
D132V7, multiclass
     clus
vv    ZNF536 MUTATED ZNF536 WILD-TYPE
  M0              13              117
  M1               0               21
  M1A              0                1
D132V8, multiclass
     clus
vv    ZNF536 MUTATED ZNF536 WILD-TYPE
  I                3               27
  II               9               48
  III              1               43
  IV               0               21

Clustering(133) Variable = CDH2 MUTATION ANALYSIS
D133V1, survival
                sevent
clus2             0  1
  CDH2 MUTATED    9  1
  CDH2 WILD-TYPE 59 10
  CDH2 MUTATED CDH2 WILD-TYPE 
            10             69 
  CDH2 MUTATED CDH2 WILD-TYPE 
             1             10 
$`CDH2 MUTATED`
TCGA-A6-3808 TCGA-AA-3710 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00E 
        9.14         1.02         1.02         0.99         1.02        30.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01Q TCGA-AA-A029 
        4.01        20.98         1.02        51.95 

$`CDH2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 
        1.02         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F 
        0.99         0.99        13.94        18.02        19.00        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S 
       12.00        12.00        13.02        38.07        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A02F 
       33.04        35.01        26.01        20.98        39.06        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  CDH2 MUTATED CDH2 WILD-TYPE 
          0.99           0.92 
  CDH2 MUTATED CDH2 WILD-TYPE 
         51.95          40.96 
  CDH2 MUTATED CDH2 WILD-TYPE 
         2.515         13.020 
[1] "1.0 - 52.0 (2.5)"  "0.9 - 41.0 (13.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE"   "CDH2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH2 WILD-TYPE"   "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
  "CDH2 MUTATED" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"CDH2 WILD-TYPE" "CDH2 WILD-TYPE" "CDH2 WILD-TYPE" 
[1] "hr=" "1.5"
D133V2, continuous
D133V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH2 MUTATED      6    6
  CDH2 WILD-TYPE   71   72
        clus
vv       CDH2 MUTATED CDH2 WILD-TYPE
  FEMALE            6             71
  MALE              6             72
D133V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH2 MUTATED      9    3
  CDH2 WILD-TYPE  119   21
                               clus
vv                              CDH2 MUTATED CDH2 WILD-TYPE
  COLON ADENOCARCINOMA                     9            119
  COLON MUCINOUS ADENOCARCINOMA            3             21
D133V5, multiclass
    clus
vv   CDH2 MUTATED CDH2 WILD-TYPE
  T1            0              4
  T2            1             32
  T3            8             95
  T4            3             11
D133V6, multiclass
    clus
vv   CDH2 MUTATED CDH2 WILD-TYPE
  N0           10             81
  N1            2             28
  N2            0             34
D133V7, multiclass
     clus
vv    CDH2 MUTATED CDH2 WILD-TYPE
  M0            10            120
  M1             0             21
  M1A            1              0
D133V8, multiclass
     clus
vv    CDH2 MUTATED CDH2 WILD-TYPE
  I              0             30
  II             9             48
  III            1             43
  IV             1             20

Clustering(134) Variable = GALNT14 MUTATION ANALYSIS
D134V1, survival
                   sevent
clus2                0  1
  GALNT14 MUTATED    3  1
  GALNT14 WILD-TYPE 65 10
  GALNT14 MUTATED GALNT14 WILD-TYPE 
                4                75 
  GALNT14 MUTATED GALNT14 WILD-TYPE 
                1                10 
$`GALNT14 MUTATED`
TCGA-AA-3947 TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A010 
        0.99        30.02         4.01        20.98 

$`GALNT14 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        18.02        19.00        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  GALNT14 MUTATED GALNT14 WILD-TYPE 
             0.99              0.92 
  GALNT14 MUTATED GALNT14 WILD-TYPE 
            30.02             51.95 
  GALNT14 MUTATED GALNT14 WILD-TYPE 
           12.495            12.000 
[1] "1.0 - 30.0 (12.5)" "0.9 - 52.0 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"GALNT14 WILD-TYPE"   "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "GALNT14 MUTATED" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" "GALNT14 WILD-TYPE" 
[1] "hr=" "2"  
D134V2, continuous
D134V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GALNT14 MUTATED      5    4
  GALNT14 WILD-TYPE   72   74
        clus
vv       GALNT14 MUTATED GALNT14 WILD-TYPE
  FEMALE               5                72
  MALE                 4                74
D134V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GALNT14 MUTATED      7    2
  GALNT14 WILD-TYPE  121   22
                               clus
vv                              GALNT14 MUTATED GALNT14 WILD-TYPE
  COLON ADENOCARCINOMA                        7               121
  COLON MUCINOUS ADENOCARCINOMA               2                22
D134V5, multiclass
    clus
vv   GALNT14 MUTATED GALNT14 WILD-TYPE
  T1               0                 4
  T2               0                33
  T3               5                98
  T4               4                10
D134V6, multiclass
    clus
vv   GALNT14 MUTATED GALNT14 WILD-TYPE
  N0               8                83
  N1               0                30
  N2               1                33
D134V7, multiclass
     clus
vv    GALNT14 MUTATED GALNT14 WILD-TYPE
  M0                9               121
  M1                0                21
  M1A               0                 1
D134V8, multiclass
     clus
vv    GALNT14 MUTATED GALNT14 WILD-TYPE
  I                 0                30
  II                8                49
  III               1                43
  IV                0                21

Clustering(135) Variable = COL22A1 MUTATION ANALYSIS
D135V1, survival
                   sevent
clus2                0  1
  COL22A1 MUTATED    5  0
  COL22A1 WILD-TYPE 63 11
  COL22A1 MUTATED COL22A1 WILD-TYPE 
                5                74 
  COL22A1 MUTATED COL22A1 WILD-TYPE 
                0                11 
$`COL22A1 MUTATED`
TCGA-AA-3555 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A010 TCGA-AA-A02W 
        0.99         0.99         1.02        20.98        40.96 

$`COL22A1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03         0.92        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  COL22A1 MUTATED COL22A1 WILD-TYPE 
             0.99              0.92 
  COL22A1 MUTATED COL22A1 WILD-TYPE 
            40.96             51.95 
  COL22A1 MUTATED COL22A1 WILD-TYPE 
             1.02             12.00 
[1] "1.0 - 41.0 (1.0)"  "0.9 - 52.0 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE"   "COL22A1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"COL22A1 WILD-TYPE"   "COL22A1 MUTATED" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" "COL22A1 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D135V2, continuous
D135V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL22A1 MUTATED      8    6
  COL22A1 WILD-TYPE   69   72
        clus
vv       COL22A1 MUTATED COL22A1 WILD-TYPE
  FEMALE               8                69
  MALE                 6                72
D135V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  COL22A1 MUTATED     11    2
  COL22A1 WILD-TYPE  117   22
                               clus
vv                              COL22A1 MUTATED COL22A1 WILD-TYPE
  COLON ADENOCARCINOMA                       11               117
  COLON MUCINOUS ADENOCARCINOMA               2                22
D135V5, multiclass
    clus
vv   COL22A1 MUTATED COL22A1 WILD-TYPE
  T1               0                 4
  T2               3                30
  T3               9                94
  T4               2                12
D135V6, multiclass
    clus
vv   COL22A1 MUTATED COL22A1 WILD-TYPE
  N0               9                82
  N1               1                29
  N2               4                30
D135V7, multiclass
     clus
vv    COL22A1 MUTATED COL22A1 WILD-TYPE
  M0               11               119
  M1                2                19
  M1A               0                 1
D135V8, multiclass
     clus
vv    COL22A1 MUTATED COL22A1 WILD-TYPE
  I                 1                29
  II                7                50
  III               3                41
  IV                2                19

Clustering(136) Variable = CSMD1 MUTATION ANALYSIS
D136V1, survival
                 sevent
clus2              0  1
  CSMD1 MUTATED    5  4
  CSMD1 WILD-TYPE 63  7
  CSMD1 MUTATED CSMD1 WILD-TYPE 
              9              70 
  CSMD1 MUTATED CSMD1 WILD-TYPE 
              4               7 
$`CSMD1 MUTATED`
TCGA-A6-3808 TCGA-AA-3666 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3977 
        9.14         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01P 
        4.01        20.98        38.07 

$`CSMD1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 
        1.02         0.99         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        0.92         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        12.00        13.02         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  CSMD1 MUTATED CSMD1 WILD-TYPE 
           0.99            0.92 
  CSMD1 MUTATED CSMD1 WILD-TYPE 
          38.07           51.95 
  CSMD1 MUTATED CSMD1 WILD-TYPE 
           1.02           13.02 
[1] "1.0 - 38.1 (1.0)"  "0.9 - 52.0 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CSMD1 WILD-TYPE"   "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CSMD1 MUTATED" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE"   "CSMD1 MUTATED" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" "CSMD1 WILD-TYPE" 
[1] "hr=" "6.1"
D136V2, continuous
D136V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD1 MUTATED      7   10
  CSMD1 WILD-TYPE   70   68
        clus
vv       CSMD1 MUTATED CSMD1 WILD-TYPE
  FEMALE             7              70
  MALE              10              68
D136V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CSMD1 MUTATED     13    3
  CSMD1 WILD-TYPE  115   21
                               clus
vv                              CSMD1 MUTATED CSMD1 WILD-TYPE
  COLON ADENOCARCINOMA                     13             115
  COLON MUCINOUS ADENOCARCINOMA             3              21
D136V5, multiclass
    clus
vv   CSMD1 MUTATED CSMD1 WILD-TYPE
  T1             0               4
  T2             1              32
  T3            14              89
  T4             2              12
D136V6, multiclass
    clus
vv   CSMD1 MUTATED CSMD1 WILD-TYPE
  N0            13              78
  N1             2              28
  N2             2              32
D136V7, multiclass
     clus
vv    CSMD1 MUTATED CSMD1 WILD-TYPE
  M0             14             116
  M1              2              19
  M1A             0               1
D136V8, multiclass
     clus
vv    CSMD1 MUTATED CSMD1 WILD-TYPE
  I               0              30
  II             12              45
  III             2              42
  IV              2              19

Clustering(137) Variable = OR52H1 MUTATION ANALYSIS
D137V1, survival
                  sevent
clus2               0  1
  OR52H1 MUTATED    2  1
  OR52H1 WILD-TYPE 66 10
  OR52H1 MUTATED OR52H1 WILD-TYPE 
               3               76 
  OR52H1 MUTATED OR52H1 WILD-TYPE 
               1               10 
$`OR52H1 MUTATED`
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01R 
        4.01        20.98        35.01 

$`OR52H1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S 
       12.00        12.00        13.02        38.07         1.02         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  OR52H1 MUTATED OR52H1 WILD-TYPE 
            4.01             0.92 
  OR52H1 MUTATED OR52H1 WILD-TYPE 
           35.01            51.95 
  OR52H1 MUTATED OR52H1 WILD-TYPE 
           20.98            11.46 
[1] "4.0 - 35.0 (21.0)" "0.9 - 52.0 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52H1 WILD-TYPE"   "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR52H1 WILD-TYPE"   "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52H1 WILD-TYPE"   "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR52H1 WILD-TYPE"   "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52H1 WILD-TYPE"   "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR52H1 WILD-TYPE"   "OR52H1 MUTATED" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" "OR52H1 WILD-TYPE" 
[1] "hr=" "2.1"
D137V2, continuous
D137V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52H1 MUTATED      2    3
  OR52H1 WILD-TYPE   75   75
        clus
vv       OR52H1 MUTATED OR52H1 WILD-TYPE
  FEMALE              2               75
  MALE                3               75
D137V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52H1 MUTATED      3    2
  OR52H1 WILD-TYPE  125   22
                               clus
vv                              OR52H1 MUTATED OR52H1 WILD-TYPE
  COLON ADENOCARCINOMA                       3              125
  COLON MUCINOUS ADENOCARCINOMA              2               22
D137V5, multiclass
    clus
vv   OR52H1 MUTATED OR52H1 WILD-TYPE
  T1              0                4
  T2              1               32
  T3              2              101
  T4              2               12
D137V6, multiclass
    clus
vv   OR52H1 MUTATED OR52H1 WILD-TYPE
  N0              3               88
  N1              1               29
  N2              1               33
D137V7, multiclass
     clus
vv    OR52H1 MUTATED OR52H1 WILD-TYPE
  M0               5              125
  M1               0               21
  M1A              0                1
D137V8, multiclass
     clus
vv    OR52H1 MUTATED OR52H1 WILD-TYPE
  I                0               30
  II               3               54
  III              2               42
  IV               0               21

Clustering(138) Variable = ODZ1 MUTATION ANALYSIS
D138V1, survival
                sevent
clus2             0  1
  ODZ1 MUTATED    6  4
  ODZ1 WILD-TYPE 62  7
  ODZ1 MUTATED ODZ1 WILD-TYPE 
            10             69 
  ODZ1 MUTATED ODZ1 WILD-TYPE 
             4              7 
$`ODZ1 MUTATED`
TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3947 
        0.99         0.99         0.99         0.99         1.02         0.99 
TCGA-AA-A00Q TCGA-AA-A01P TCGA-AA-A03F TCGA-AY-4071 
       27.02        38.07        18.02         0.95 

$`ODZ1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3842 
        1.02         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        0.92         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        1.02         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00R 
       18.02        18.02        17.00         4.01        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R 
       13.02        12.00        12.00        13.02         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 
       39.95        40.93        16.31 

  ODZ1 MUTATED ODZ1 WILD-TYPE 
          0.95           0.92 
  ODZ1 MUTATED ODZ1 WILD-TYPE 
         38.07          51.95 
  ODZ1 MUTATED ODZ1 WILD-TYPE 
          0.99          13.02 
[1] "0.9 - 38.1 (1.0)"  "0.9 - 52.0 (13.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED"   "ODZ1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "ODZ1 MUTATED"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED"   "ODZ1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "ODZ1 MUTATED"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED"   "ODZ1 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "ODZ1 MUTATED"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" "ODZ1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"ODZ1 WILD-TYPE" "ODZ1 WILD-TYPE"   "ODZ1 MUTATED" 
[1] "hr=" "6.5"
D138V2, continuous
D138V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ODZ1 MUTATED     15    2
  ODZ1 WILD-TYPE   62   76
        clus
vv       ODZ1 MUTATED ODZ1 WILD-TYPE
  FEMALE           15             62
  MALE              2             76
D138V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ODZ1 MUTATED      9    6
  ODZ1 WILD-TYPE  119   18
                               clus
vv                              ODZ1 MUTATED ODZ1 WILD-TYPE
  COLON ADENOCARCINOMA                     9            119
  COLON MUCINOUS ADENOCARCINOMA            6             18
D138V5, multiclass
    clus
vv   ODZ1 MUTATED ODZ1 WILD-TYPE
  T1            1              3
  T2            3             30
  T3           11             92
  T4            2             12
D138V6, multiclass
    clus
vv   ODZ1 MUTATED ODZ1 WILD-TYPE
  N0           11             80
  N1            2             28
  N2            4             30
D138V7, multiclass
     clus
vv    ODZ1 MUTATED ODZ1 WILD-TYPE
  M0            16            114
  M1             0             21
  M1A            0              1
D138V8, multiclass
     clus
vv    ODZ1 MUTATED ODZ1 WILD-TYPE
  I              4             26
  II             7             50
  III            6             38
  IV             0             21

Clustering(139) Variable = SCN11A MUTATION ANALYSIS
D139V1, survival
                  sevent
clus2               0  1
  SCN11A MUTATED    7  1
  SCN11A WILD-TYPE 61 10
  SCN11A MUTATED SCN11A WILD-TYPE 
               8               71 
  SCN11A MUTATED SCN11A WILD-TYPE 
               1               10 
$`SCN11A MUTATED`
TCGA-AA-3555 TCGA-AA-3977 TCGA-AA-A00A TCGA-AA-A00N TCGA-AA-A00U TCGA-AA-A010 
        0.99         1.02        18.02         4.01        17.00        20.98 
TCGA-AA-A01R TCGA-AA-A01Z 
       35.01        20.98 

$`SCN11A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02        27.02         0.99        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 
        1.02         1.02        33.04        35.01        26.01        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  SCN11A MUTATED SCN11A WILD-TYPE 
            0.99             0.92 
  SCN11A MUTATED SCN11A WILD-TYPE 
           35.01            51.95 
  SCN11A MUTATED SCN11A WILD-TYPE 
           17.51            10.92 
[1] "1.0 - 35.0 (17.5)" "0.9 - 52.0 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE"   "SCN11A MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE"   "SCN11A MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE"   "SCN11A MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE"   "SCN11A MUTATED" "SCN11A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"SCN11A WILD-TYPE" "SCN11A WILD-TYPE" "SCN11A WILD-TYPE" 
[1] "hr=" "1.2"
D139V2, continuous
D139V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SCN11A MUTATED      8    7
  SCN11A WILD-TYPE   69   71
        clus
vv       SCN11A MUTATED SCN11A WILD-TYPE
  FEMALE              8               69
  MALE                7               71
D139V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SCN11A MUTATED     12    3
  SCN11A WILD-TYPE  116   21
                               clus
vv                              SCN11A MUTATED SCN11A WILD-TYPE
  COLON ADENOCARCINOMA                      12              116
  COLON MUCINOUS ADENOCARCINOMA              3               21
D139V5, multiclass
    clus
vv   SCN11A MUTATED SCN11A WILD-TYPE
  T1              0                4
  T2              2               31
  T3             10               93
  T4              3               11
D139V6, multiclass
    clus
vv   SCN11A MUTATED SCN11A WILD-TYPE
  N0             11               80
  N1              3               27
  N2              1               33
D139V7, multiclass
     clus
vv    SCN11A MUTATED SCN11A WILD-TYPE
  M0              14              116
  M1               0               21
  M1A              0                1
D139V8, multiclass
     clus
vv    SCN11A MUTATED SCN11A WILD-TYPE
  I                0               30
  II              10               47
  III              4               40
  IV               0               21

Clustering(140) Variable = NLRP5 MUTATION ANALYSIS
D140V1, survival
                 sevent
clus2              0  1
  NLRP5 MUTATED    4  1
  NLRP5 WILD-TYPE 64 10
  NLRP5 MUTATED NLRP5 WILD-TYPE 
              5              74 
  NLRP5 MUTATED NLRP5 WILD-TYPE 
              1              10 
$`NLRP5 MUTATED`
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01I TCGA-AA-A01R TCGA-AA-A02O 
        4.01        20.98        12.00        35.01         0.92 

$`NLRP5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07         1.02         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  NLRP5 MUTATED NLRP5 WILD-TYPE 
           0.92            0.92 
  NLRP5 MUTATED NLRP5 WILD-TYPE 
          35.01           51.95 
  NLRP5 MUTATED NLRP5 WILD-TYPE 
          12.00           11.46 
[1] "0.9 - 35.0 (12.0)" "0.9 - 52.0 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"NLRP5 WILD-TYPE"   "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
  "NLRP5 MUTATED" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" "NLRP5 WILD-TYPE" 
[1] "hr=" "1.6"
D140V2, continuous
D140V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLRP5 MUTATED      4    6
  NLRP5 WILD-TYPE   73   72
        clus
vv       NLRP5 MUTATED NLRP5 WILD-TYPE
  FEMALE             4              73
  MALE               6              72
D140V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NLRP5 MUTATED      7    2
  NLRP5 WILD-TYPE  121   22
                               clus
vv                              NLRP5 MUTATED NLRP5 WILD-TYPE
  COLON ADENOCARCINOMA                      7             121
  COLON MUCINOUS ADENOCARCINOMA             2              22
D140V5, multiclass
    clus
vv   NLRP5 MUTATED NLRP5 WILD-TYPE
  T1             0               4
  T2             2              31
  T3             6              97
  T4             2              12
D140V6, multiclass
    clus
vv   NLRP5 MUTATED NLRP5 WILD-TYPE
  N0             8              83
  N1             0              30
  N2             2              32
D140V7, multiclass
     clus
vv    NLRP5 MUTATED NLRP5 WILD-TYPE
  M0              9             121
  M1              1              20
  M1A             0               1
D140V8, multiclass
     clus
vv    NLRP5 MUTATED NLRP5 WILD-TYPE
  I               2              28
  II              6              51
  III             1              43
  IV              1              20

Clustering(141) Variable = BCHE MUTATION ANALYSIS
D141V1, survival
                sevent
clus2             0  1
  BCHE MUTATED    4  0
  BCHE WILD-TYPE 64 11
  BCHE MUTATED BCHE WILD-TYPE 
             4             75 
  BCHE MUTATED BCHE WILD-TYPE 
             0             11 
$`BCHE MUTATED`
TCGA-AA-3811 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A01V 
        0.99         1.02        30.02        35.01 

$`BCHE WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       33.04        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  BCHE MUTATED BCHE WILD-TYPE 
          0.99           0.92 
  BCHE MUTATED BCHE WILD-TYPE 
         35.01          51.95 
  BCHE MUTATED BCHE WILD-TYPE 
         15.52          12.00 
[1] "1.0 - 35.0 (15.5)" "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE"   "BCHE MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
  "BCHE MUTATED" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"BCHE WILD-TYPE" "BCHE WILD-TYPE" "BCHE WILD-TYPE" 
[1] "hr="     "2.7e+07"
D141V2, continuous
D141V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCHE MUTATED      2    5
  BCHE WILD-TYPE   75   73
        clus
vv       BCHE MUTATED BCHE WILD-TYPE
  FEMALE            2             75
  MALE              5             73
D141V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BCHE MUTATED      6    1
  BCHE WILD-TYPE  122   23
                               clus
vv                              BCHE MUTATED BCHE WILD-TYPE
  COLON ADENOCARCINOMA                     6            122
  COLON MUCINOUS ADENOCARCINOMA            1             23
D141V5, multiclass
    clus
vv   BCHE MUTATED BCHE WILD-TYPE
  T1            0              4
  T2            3             30
  T3            4             99
  T4            0             14
D141V6, multiclass
    clus
vv   BCHE MUTATED BCHE WILD-TYPE
  N0            5             86
  N1            0             30
  N2            2             32
D141V7, multiclass
     clus
vv    BCHE MUTATED BCHE WILD-TYPE
  M0             6            124
  M1             0             21
  M1A            0              1
D141V8, multiclass
     clus
vv    BCHE MUTATED BCHE WILD-TYPE
  I              2             28
  II             2             55
  III            2             42
  IV             0             21

Clustering(142) Variable = PROKR1 MUTATION ANALYSIS
D142V1, survival
                  sevent
clus2               0  1
  PROKR1 MUTATED    6  0
  PROKR1 WILD-TYPE 62 11
  PROKR1 MUTATED PROKR1 WILD-TYPE 
               6               73 
  PROKR1 MUTATED PROKR1 WILD-TYPE 
               0               11 
$`PROKR1 MUTATED`
TCGA-AA-3710 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A010 TCGA-AA-A01I TCGA-AA-A01R 
        1.02         1.02        30.02        20.98        12.00        35.01 

$`PROKR1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K 
       21.99        15.02         0.99        13.02        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  PROKR1 MUTATED PROKR1 WILD-TYPE 
            1.02             0.92 
  PROKR1 MUTATED PROKR1 WILD-TYPE 
           35.01            51.95 
  PROKR1 MUTATED PROKR1 WILD-TYPE 
           16.49            10.92 
[1] "1.0 - 35.0 (16.5)" "0.9 - 52.0 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE"   "PROKR1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE"   "PROKR1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE"   "PROKR1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PROKR1 WILD-TYPE"   "PROKR1 MUTATED" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" "PROKR1 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D142V2, continuous
D142V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PROKR1 MUTATED      3    5
  PROKR1 WILD-TYPE   74   73
        clus
vv       PROKR1 MUTATED PROKR1 WILD-TYPE
  FEMALE              3               74
  MALE                5               73
D142V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PROKR1 MUTATED      7    1
  PROKR1 WILD-TYPE  121   23
                               clus
vv                              PROKR1 MUTATED PROKR1 WILD-TYPE
  COLON ADENOCARCINOMA                       7              121
  COLON MUCINOUS ADENOCARCINOMA              1               23
D142V5, multiclass
    clus
vv   PROKR1 MUTATED PROKR1 WILD-TYPE
  T1              0                4
  T2              2               31
  T3              5               98
  T4              1               13
D142V6, multiclass
    clus
vv   PROKR1 MUTATED PROKR1 WILD-TYPE
  N0              6               85
  N1              1               29
  N2              1               33
D142V7, multiclass
     clus
vv    PROKR1 MUTATED PROKR1 WILD-TYPE
  M0               7              123
  M1               0               21
  M1A              0                1
D142V8, multiclass
     clus
vv    PROKR1 MUTATED PROKR1 WILD-TYPE
  I                1               29
  II               4               53
  III              2               42
  IV               0               21

Clustering(143) Variable = TECTA MUTATION ANALYSIS
D143V1, survival
                 sevent
clus2              0  1
  TECTA MUTATED    9  1
  TECTA WILD-TYPE 59 10
  TECTA MUTATED TECTA WILD-TYPE 
             10              69 
  TECTA MUTATED TECTA WILD-TYPE 
              1              10 
$`TECTA MUTATED`
TCGA-A6-2676 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3844 TCGA-AA-3947 
       14.70         0.99         0.99         0.99         0.92         0.99 
TCGA-AA-A004 TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A01X 
       13.94        18.02         4.01        26.01 

$`TECTA WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 
       10.92         9.14         8.09         1.02         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3818 TCGA-AA-3837 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        1.02         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K 
        0.99        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       33.04        35.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  TECTA MUTATED TECTA WILD-TYPE 
           0.92            0.92 
  TECTA MUTATED TECTA WILD-TYPE 
          26.01           51.95 
  TECTA MUTATED TECTA WILD-TYPE 
            2.5            12.0 
[1] "0.9 - 26.0 (2.5)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED"   "TECTA MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED"   "TECTA MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED"   "TECTA MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"TECTA WILD-TYPE" "TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"TECTA WILD-TYPE"   "TECTA MUTATED" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"TECTA WILD-TYPE" "TECTA WILD-TYPE" "TECTA WILD-TYPE" 
[1] "hr=" "1.2"
D143V2, continuous
D143V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TECTA MUTATED     10    7
  TECTA WILD-TYPE   67   71
        clus
vv       TECTA MUTATED TECTA WILD-TYPE
  FEMALE            10              67
  MALE               7              71
D143V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TECTA MUTATED     10    6
  TECTA WILD-TYPE  118   18
                               clus
vv                              TECTA MUTATED TECTA WILD-TYPE
  COLON ADENOCARCINOMA                     10             118
  COLON MUCINOUS ADENOCARCINOMA             6              18
D143V5, multiclass
    clus
vv   TECTA MUTATED TECTA WILD-TYPE
  T1             0               4
  T2             2              31
  T3            11              92
  T4             3              11
D143V6, multiclass
    clus
vv   TECTA MUTATED TECTA WILD-TYPE
  N0             9              82
  N1             4              26
  N2             4              30
D143V7, multiclass
     clus
vv    TECTA MUTATED TECTA WILD-TYPE
  M0             16             114
  M1              1              20
  M1A             0               1
D143V8, multiclass
     clus
vv    TECTA MUTATED TECTA WILD-TYPE
  I               0              30
  II              9              48
  III             7              37
  IV              1              20

Clustering(144) Variable = SGCZ MUTATION ANALYSIS
D144V1, survival
                sevent
clus2             0  1
  SGCZ MUTATED    4  0
  SGCZ WILD-TYPE 64 11
  SGCZ MUTATED SGCZ WILD-TYPE 
             4             75 
  SGCZ MUTATED SGCZ WILD-TYPE 
             0             11 
$`SGCZ MUTATED`
TCGA-AA-3811 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A010 
        0.99         1.02        18.02        20.98 

$`SGCZ WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        34.03        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  SGCZ MUTATED SGCZ WILD-TYPE 
          0.99           0.92 
  SGCZ MUTATED SGCZ WILD-TYPE 
         20.98          51.95 
  SGCZ MUTATED SGCZ WILD-TYPE 
          9.52          12.00 
[1] "1.0 - 21.0 (9.5)"  "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE"   "SGCZ MUTATED" "SGCZ WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "SGCZ MUTATED" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"SGCZ WILD-TYPE" "SGCZ WILD-TYPE" "SGCZ WILD-TYPE" 
[1] "hr="     "2.7e+07"
D144V2, continuous
D144V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SGCZ MUTATED      2    4
  SGCZ WILD-TYPE   75   74
        clus
vv       SGCZ MUTATED SGCZ WILD-TYPE
  FEMALE            2             75
  MALE              4             74
D144V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  SGCZ MUTATED      5    1
  SGCZ WILD-TYPE  123   23
                               clus
vv                              SGCZ MUTATED SGCZ WILD-TYPE
  COLON ADENOCARCINOMA                     5            123
  COLON MUCINOUS ADENOCARCINOMA            1             23
D144V5, multiclass
    clus
vv   SGCZ MUTATED SGCZ WILD-TYPE
  T1            0              4
  T2            2             31
  T3            2            101
  T4            2             12
D144V6, multiclass
    clus
vv   SGCZ MUTATED SGCZ WILD-TYPE
  N0            3             88
  N1            2             28
  N2            1             33
D144V7, multiclass
     clus
vv    SGCZ MUTATED SGCZ WILD-TYPE
  M0             3            127
  M1             1             20
  M1A            0              1
D144V8, multiclass
     clus
vv    SGCZ MUTATED SGCZ WILD-TYPE
  I              0             30
  II             1             56
  III            2             42
  IV             1             20

Clustering(145) Variable = PTH2R MUTATION ANALYSIS
D145V1, survival
                 sevent
clus2              0  1
  PTH2R MUTATED    3  0
  PTH2R WILD-TYPE 65 11
  PTH2R MUTATED PTH2R WILD-TYPE 
              3              76 
  PTH2R MUTATED PTH2R WILD-TYPE 
              0              11 
$`PTH2R MUTATED`
TCGA-AA-3949 TCGA-AA-A00J TCGA-AA-A01X 
        0.99        18.02        26.01 

$`PTH2R WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
        1.02        33.04        35.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  PTH2R MUTATED PTH2R WILD-TYPE 
           0.99            0.92 
  PTH2R MUTATED PTH2R WILD-TYPE 
          26.01           51.95 
  PTH2R MUTATED PTH2R WILD-TYPE 
          18.02           11.46 
[1] "1.0 - 26.0 (18.0)" "0.9 - 52.0 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE"   "PTH2R MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE"   "PTH2R MUTATED" "PTH2R WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PTH2R WILD-TYPE"   "PTH2R MUTATED" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE"   "PTH2R MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE"   "PTH2R MUTATED" "PTH2R WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PTH2R WILD-TYPE"   "PTH2R MUTATED" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE"   "PTH2R MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE"   "PTH2R MUTATED" "PTH2R WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PTH2R WILD-TYPE"   "PTH2R MUTATED" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PTH2R WILD-TYPE" "PTH2R WILD-TYPE" "PTH2R WILD-TYPE" 
[1] "hr="     "2.6e+07"
D145V2, continuous
D145V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PTH2R MUTATED      5    1
  PTH2R WILD-TYPE   72   77
        clus
vv       PTH2R MUTATED PTH2R WILD-TYPE
  FEMALE             5              72
  MALE               1              77
D145V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PTH2R MUTATED      4    2
  PTH2R WILD-TYPE  124   22
                               clus
vv                              PTH2R MUTATED PTH2R WILD-TYPE
  COLON ADENOCARCINOMA                      4             124
  COLON MUCINOUS ADENOCARCINOMA             2              22
D145V5, multiclass
    clus
vv   PTH2R MUTATED PTH2R WILD-TYPE
  T1             0               4
  T2             1              32
  T3             4              99
  T4             1              13
D145V6, multiclass
    clus
vv   PTH2R MUTATED PTH2R WILD-TYPE
  N0             3              88
  N1             3              27
  N2             0              34
D145V7, multiclass
     clus
vv    PTH2R MUTATED PTH2R WILD-TYPE
  M0              6             124
  M1              0              21
  M1A             0               1
D145V8, multiclass
     clus
vv    PTH2R MUTATED PTH2R WILD-TYPE
  I               0              30
  II              3              54
  III             3              41
  IV              0              21

Clustering(146) Variable = ADAMTS5 MUTATION ANALYSIS
D146V1, survival
                   sevent
clus2                0  1
  ADAMTS5 MUTATED    3  1
  ADAMTS5 WILD-TYPE 65 10
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
                4                75 
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
                1                10 
$`ADAMTS5 MUTATED`
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-A004 TCGA-AA-A00N 
        1.02         0.99        13.94         4.01 

$`ADAMTS5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A00A 
        1.02         1.02         0.99         1.02         0.99        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
             0.99              0.92 
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
            13.94             51.95 
  ADAMTS5 MUTATED ADAMTS5 WILD-TYPE 
            2.515            12.000 
[1] "1.0 - 13.9 (2.5)"  "0.9 - 52.0 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"ADAMTS5 WILD-TYPE"   "ADAMTS5 MUTATED" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" "ADAMTS5 WILD-TYPE" 
[1] "hr=" "3.5"
D146V2, continuous
D146V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ADAMTS5 MUTATED      6    5
  ADAMTS5 WILD-TYPE   71   73
        clus
vv       ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  FEMALE               6                71
  MALE                 5                73
D146V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ADAMTS5 MUTATED      9    2
  ADAMTS5 WILD-TYPE  119   22
                               clus
vv                              ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  COLON ADENOCARCINOMA                        9               119
  COLON MUCINOUS ADENOCARCINOMA               2                22
D146V5, multiclass
    clus
vv   ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  T1               0                 4
  T2               0                33
  T3               9                94
  T4               2                12
D146V6, multiclass
    clus
vv   ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  N0               8                83
  N1               1                29
  N2               2                32
D146V7, multiclass
     clus
vv    ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  M0                9               121
  M1                2                19
  M1A               0                 1
D146V8, multiclass
     clus
vv    ADAMTS5 MUTATED ADAMTS5 WILD-TYPE
  I                 0                30
  II                8                49
  III               1                43
  IV                2                19

Clustering(147) Variable = CHRDL1 MUTATION ANALYSIS
D147V1, survival
                  sevent
clus2               0  1
  CHRDL1 MUTATED    2  1
  CHRDL1 WILD-TYPE 66 10
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
               3               76 
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
               1               10 
$`CHRDL1 MUTATED`
TCGA-AA-3844 TCGA-AA-A00N TCGA-AA-A03J 
        0.92         4.01        40.93 

$`CHRDL1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        16.31         0.95 

  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
            0.92             0.92 
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
           40.93            51.95 
  CHRDL1 MUTATED CHRDL1 WILD-TYPE 
            4.01            12.00 
[1] "0.9 - 40.9 (4.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CHRDL1 WILD-TYPE"   "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
  "CHRDL1 MUTATED" "CHRDL1 WILD-TYPE" "CHRDL1 WILD-TYPE" 
[1] "hr=" "1.7"
D147V2, continuous
D147V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CHRDL1 MUTATED      5    2
  CHRDL1 WILD-TYPE   72   76
        clus
vv       CHRDL1 MUTATED CHRDL1 WILD-TYPE
  FEMALE              5               72
  MALE                2               76
D147V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CHRDL1 MUTATED      6    1
  CHRDL1 WILD-TYPE  122   23
                               clus
vv                              CHRDL1 MUTATED CHRDL1 WILD-TYPE
  COLON ADENOCARCINOMA                       6              122
  COLON MUCINOUS ADENOCARCINOMA              1               23
D147V5, multiclass
    clus
vv   CHRDL1 MUTATED CHRDL1 WILD-TYPE
  T1              0                4
  T2              1               32
  T3              5               98
  T4              1               13
D147V6, multiclass
    clus
vv   CHRDL1 MUTATED CHRDL1 WILD-TYPE
  N0              4               87
  N1              1               29
  N2              2               32
D147V7, multiclass
     clus
vv    CHRDL1 MUTATED CHRDL1 WILD-TYPE
  M0               7              123
  M1               0               21
  M1A              0                1
D147V8, multiclass
     clus
vv    CHRDL1 MUTATED CHRDL1 WILD-TYPE
  I                1               29
  II               3               54
  III              3               41
  IV               0               21

Clustering(148) Variable = OR52J3 MUTATION ANALYSIS
D148V1, survival
                  sevent
clus2               0  1
  OR52J3 MUTATED    1  1
  OR52J3 WILD-TYPE 67 10
  OR52J3 MUTATED OR52J3 WILD-TYPE 
               2               77 
  OR52J3 MUTATED OR52J3 WILD-TYPE 
               1               10 
$`OR52J3 MUTATED`
TCGA-AA-A00N TCGA-AA-A02F 
        4.01        39.95 

$`OR52J3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       39.06        51.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  OR52J3 MUTATED OR52J3 WILD-TYPE 
            4.01             0.92 
  OR52J3 MUTATED OR52J3 WILD-TYPE 
           39.95            51.95 
  OR52J3 MUTATED OR52J3 WILD-TYPE 
           21.98            12.00 
[1] "4.0 - 40.0 (22.0)" "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
[1] "Remove cluster labels:" "OR52J3 MUTATED"        
clus
  OR52J3 MUTATED OR52J3 WILD-TYPE 
               2               77 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O       TCGA-AA-A02W 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J       TCGA-AY-4070 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-AY-4071 
"OR52J3 WILD-TYPE" 
D148V2, continuous
D148V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52J3 MUTATED      3    2
  OR52J3 WILD-TYPE   74   76
        clus
vv       OR52J3 MUTATED OR52J3 WILD-TYPE
  FEMALE              3               74
  MALE                2               76
D148V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52J3 MUTATED      4    1
  OR52J3 WILD-TYPE  124   23
                               clus
vv                              OR52J3 MUTATED OR52J3 WILD-TYPE
  COLON ADENOCARCINOMA                       4              124
  COLON MUCINOUS ADENOCARCINOMA              1               23
D148V5, multiclass
    clus
vv   OR52J3 MUTATED OR52J3 WILD-TYPE
  T1              0                4
  T2              0               33
  T3              2              101
  T4              3               11
D148V6, multiclass
    clus
vv   OR52J3 MUTATED OR52J3 WILD-TYPE
  N0              3               88
  N1              1               29
  N2              1               33
D148V7, multiclass
     clus
vv    OR52J3 MUTATED OR52J3 WILD-TYPE
  M0               3              127
  M1               2               19
  M1A              0                1
D148V8, multiclass
     clus
vv    OR52J3 MUTATED OR52J3 WILD-TYPE
  I                0               30
  II               3               54
  III              0               44
  IV               2               19

Clustering(149) Variable = MYO16 MUTATION ANALYSIS
D149V1, survival
                 sevent
clus2              0  1
  MYO16 MUTATED    7  1
  MYO16 WILD-TYPE 61 10
  MYO16 MUTATED MYO16 WILD-TYPE 
              8              71 
  MYO16 MUTATED MYO16 WILD-TYPE 
              1              10 
$`MYO16 MUTATED`
TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00J 
        0.99         0.99         0.99         1.02        30.02        18.02 
TCGA-AA-A00N TCGA-AA-A010 
        4.01        20.98 

$`MYO16 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       34.03        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  MYO16 MUTATED MYO16 WILD-TYPE 
           0.99            0.92 
  MYO16 MUTATED MYO16 WILD-TYPE 
          30.02           51.95 
  MYO16 MUTATED MYO16 WILD-TYPE 
          2.515          12.000 
[1] "1.0 - 30.0 (2.5)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE"   "MYO16 MUTATED"   "MYO16 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "MYO16 MUTATED" "MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE"   "MYO16 MUTATED"   "MYO16 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "MYO16 MUTATED" "MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE"   "MYO16 MUTATED"   "MYO16 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "MYO16 MUTATED" "MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MYO16 WILD-TYPE"   "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "MYO16 MUTATED" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"MYO16 WILD-TYPE" "MYO16 WILD-TYPE" "MYO16 WILD-TYPE" 
[1] "hr=" "1.2"
D149V2, continuous
D149V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYO16 MUTATED      7    8
  MYO16 WILD-TYPE   70   70
        clus
vv       MYO16 MUTATED MYO16 WILD-TYPE
  FEMALE             7              70
  MALE               8              70
D149V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MYO16 MUTATED      9    5
  MYO16 WILD-TYPE  119   19
                               clus
vv                              MYO16 MUTATED MYO16 WILD-TYPE
  COLON ADENOCARCINOMA                      9             119
  COLON MUCINOUS ADENOCARCINOMA             5              19
D149V5, multiclass
    clus
vv   MYO16 MUTATED MYO16 WILD-TYPE
  T1             0               4
  T2             3              30
  T3             8              95
  T4             4              10
D149V6, multiclass
    clus
vv   MYO16 MUTATED MYO16 WILD-TYPE
  N0            12              79
  N1             1              29
  N2             2              32
D149V7, multiclass
     clus
vv    MYO16 MUTATED MYO16 WILD-TYPE
  M0             13             117
  M1              1              20
  M1A             0               1
D149V8, multiclass
     clus
vv    MYO16 MUTATED MYO16 WILD-TYPE
  I               2              28
  II              9              48
  III             2              42
  IV              1              20

Clustering(150) Variable = TGFBR2 MUTATION ANALYSIS
D150V1, survival
                  sevent
clus2               0  1
  TGFBR2 MUTATED    5  1
  TGFBR2 WILD-TYPE 63 10
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
               6               73 
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
               1               10 
$`TGFBR2 MUTATED`
TCGA-A6-3808 TCGA-AA-A010 TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A029 TCGA-AA-A03F 
        9.14        20.98         1.02        35.01        51.95        18.02 

$`TGFBR2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01S TCGA-AA-A01T 
       12.00        12.00        13.02        38.07         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        26.01        20.98        39.06        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        40.96        39.95        40.93        16.31 
TCGA-AY-4071 
        0.95 

  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
            1.02             0.92 
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
           51.95            40.96 
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
           19.50            10.92 
[1] "1.0 - 52.0 (19.5)" "0.9 - 41.0 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "TGFBR2 MUTATED"   "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE"   "TGFBR2 MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "TGFBR2 MUTATED"   "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE"   "TGFBR2 MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "TGFBR2 MUTATED"   "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
  "TGFBR2 MUTATED" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE"   "TGFBR2 MUTATED" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" "TGFBR2 WILD-TYPE" 
[1] "hr=" "1.4"
D150V2, continuous
D150V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TGFBR2 MUTATED      4    3
  TGFBR2 WILD-TYPE   73   75
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  FEMALE              4               73
  MALE                3               75
D150V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TGFBR2 MUTATED      4    3
  TGFBR2 WILD-TYPE  124   21
                               clus
vv                              TGFBR2 MUTATED TGFBR2 WILD-TYPE
  COLON ADENOCARCINOMA                       4              124
  COLON MUCINOUS ADENOCARCINOMA              3               21
D150V5, multiclass
    clus
vv   TGFBR2 MUTATED TGFBR2 WILD-TYPE
  T1              0                4
  T2              1               32
  T3              5               98
  T4              1               13
D150V6, multiclass
    clus
vv   TGFBR2 MUTATED TGFBR2 WILD-TYPE
  N0              5               86
  N1              0               30
  N2              2               32
D150V7, multiclass
     clus
vv    TGFBR2 MUTATED TGFBR2 WILD-TYPE
  M0               7              123
  M1               0               21
  M1A              0                1
D150V8, multiclass
     clus
vv    TGFBR2 MUTATED TGFBR2 WILD-TYPE
  I                1               29
  II               4               53
  III              2               42
  IV               0               21

Clustering(151) Variable = CDH8 MUTATION ANALYSIS
D151V1, survival
                sevent
clus2             0  1
  CDH8 MUTATED    3  1
  CDH8 WILD-TYPE 65 10
  CDH8 MUTATED CDH8 WILD-TYPE 
             4             75 
  CDH8 MUTATED CDH8 WILD-TYPE 
             1             10 
$`CDH8 MUTATED`
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A00R TCGA-AA-A01Q 
        1.02         4.01         0.99         1.02 

$`CDH8 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W 
       18.02        17.00        27.02        27.02        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  CDH8 MUTATED CDH8 WILD-TYPE 
          0.99           0.92 
  CDH8 MUTATED CDH8 WILD-TYPE 
          4.01          51.95 
  CDH8 MUTATED CDH8 WILD-TYPE 
          1.02          13.02 
[1] "1.0 - 4.0 (1.0)"   "0.9 - 52.0 (13.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH8 WILD-TYPE"   "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH8 WILD-TYPE"   "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE"   "CDH8 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDH8 WILD-TYPE"   "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDH8 MUTATED" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"CDH8 WILD-TYPE" "CDH8 WILD-TYPE" "CDH8 WILD-TYPE" 
[1] "hr=" "4.7"
D151V2, continuous
D151V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH8 MUTATED      6    4
  CDH8 WILD-TYPE   71   74
        clus
vv       CDH8 MUTATED CDH8 WILD-TYPE
  FEMALE            6             71
  MALE              4             74
D151V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDH8 MUTATED      9    1
  CDH8 WILD-TYPE  119   23
                               clus
vv                              CDH8 MUTATED CDH8 WILD-TYPE
  COLON ADENOCARCINOMA                     9            119
  COLON MUCINOUS ADENOCARCINOMA            1             23
D151V5, multiclass
    clus
vv   CDH8 MUTATED CDH8 WILD-TYPE
  T1            0              4
  T2            3             30
  T3            6             97
  T4            1             13
D151V6, multiclass
    clus
vv   CDH8 MUTATED CDH8 WILD-TYPE
  N0            7             84
  N1            2             28
  N2            1             33
D151V7, multiclass
     clus
vv    CDH8 MUTATED CDH8 WILD-TYPE
  M0             8            122
  M1             1             20
  M1A            0              1
D151V8, multiclass
     clus
vv    CDH8 MUTATED CDH8 WILD-TYPE
  I              2             28
  II             4             53
  III            2             42
  IV             1             20

Clustering(152) Variable = PCBP1 MUTATION ANALYSIS
D152V1, survival
                 sevent
clus2              0  1
  PCBP1 MUTATED    2  0
  PCBP1 WILD-TYPE 66 11
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              2              77 
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              0              11 
$`PCBP1 MUTATED`
TCGA-AA-3941 TCGA-AA-A01I 
        1.02        12.00 

$`PCBP1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3947 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       13.02        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  PCBP1 MUTATED PCBP1 WILD-TYPE 
           1.02            0.92 
  PCBP1 MUTATED PCBP1 WILD-TYPE 
          12.00           51.95 
  PCBP1 MUTATED PCBP1 WILD-TYPE 
           6.51           12.00 
[1] "1.0 - 12.0 (6.5)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PCBP1 WILD-TYPE"   "PCBP1 MUTATED" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
[1] "Remove cluster labels:" "PCBP1 MUTATED"         
clus
  PCBP1 MUTATED PCBP1 WILD-TYPE 
              2              77 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3947      TCGA-AA-3949      TCGA-AA-3952 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977      TCGA-AA-3986 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q      TCGA-AA-A01R 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V      TCGA-AA-A01X 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AY-4070 
"PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" "PCBP1 WILD-TYPE" 
     TCGA-AY-4071 
"PCBP1 WILD-TYPE" 
D152V2, continuous
D152V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCBP1 MUTATED      2    2
  PCBP1 WILD-TYPE   75   76
        clus
vv       PCBP1 MUTATED PCBP1 WILD-TYPE
  FEMALE             2              75
  MALE               2              76
D152V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PCBP1 MUTATED      4    0
  PCBP1 WILD-TYPE  124   24
                               clus
vv                              PCBP1 MUTATED PCBP1 WILD-TYPE
  COLON ADENOCARCINOMA                      4             124
  COLON MUCINOUS ADENOCARCINOMA             0              24
D152V5, multiclass
    clus
vv   PCBP1 MUTATED PCBP1 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             2             101
  T4             1              13
D152V6, multiclass
    clus
vv   PCBP1 MUTATED PCBP1 WILD-TYPE
  N0             3              88
  N1             1              29
  N2             0              34
D152V7, multiclass
     clus
vv    PCBP1 MUTATED PCBP1 WILD-TYPE
  M0              3             127
  M1              0              21
  M1A             1               0
D152V8, multiclass
     clus
vv    PCBP1 MUTATED PCBP1 WILD-TYPE
  I               1              29
  II              2              55
  III             0              44
  IV              1              20

Clustering(153) Variable = ACSS3 MUTATION ANALYSIS
D153V1, survival
                 sevent
clus2              0  1
  ACSS3 MUTATED    2  1
  ACSS3 WILD-TYPE 66 10
  ACSS3 MUTATED ACSS3 WILD-TYPE 
              3              76 
  ACSS3 MUTATED ACSS3 WILD-TYPE 
              1              10 
$`ACSS3 MUTATED`
TCGA-A6-2676 TCGA-AA-3949 TCGA-AA-A00N 
       14.70         0.99         4.01 

$`ACSS3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  ACSS3 MUTATED ACSS3 WILD-TYPE 
           0.99            0.92 
  ACSS3 MUTATED ACSS3 WILD-TYPE 
          14.70           51.95 
  ACSS3 MUTATED ACSS3 WILD-TYPE 
           4.01           12.00 
[1] "1.0 - 14.7 (4.0)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE"   "ACSS3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE"   "ACSS3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ACSS3 WILD-TYPE"   "ACSS3 MUTATED" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE"   "ACSS3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE"   "ACSS3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ACSS3 WILD-TYPE"   "ACSS3 MUTATED" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE"   "ACSS3 MUTATED" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE"   "ACSS3 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ACSS3 WILD-TYPE"   "ACSS3 MUTATED" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" "ACSS3 WILD-TYPE" 
[1] "hr=" "4.4"
D153V2, continuous
D153V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACSS3 MUTATED      6    2
  ACSS3 WILD-TYPE   71   76
        clus
vv       ACSS3 MUTATED ACSS3 WILD-TYPE
  FEMALE             6              71
  MALE               2              76
D153V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ACSS3 MUTATED      5    3
  ACSS3 WILD-TYPE  123   21
                               clus
vv                              ACSS3 MUTATED ACSS3 WILD-TYPE
  COLON ADENOCARCINOMA                      5             123
  COLON MUCINOUS ADENOCARCINOMA             3              21
D153V5, multiclass
    clus
vv   ACSS3 MUTATED ACSS3 WILD-TYPE
  T1             0               4
  T2             0              33
  T3             5              98
  T4             2              12
D153V6, multiclass
    clus
vv   ACSS3 MUTATED ACSS3 WILD-TYPE
  N0             5              86
  N1             1              29
  N2             2              32
D153V7, multiclass
     clus
vv    ACSS3 MUTATED ACSS3 WILD-TYPE
  M0              7             123
  M1              1              20
  M1A             0               1
D153V8, multiclass
     clus
vv    ACSS3 MUTATED ACSS3 WILD-TYPE
  I               0              30
  II              5              52
  III             2              42
  IV              1              20

Clustering(154) Variable = JAKMIP2 MUTATION ANALYSIS
D154V1, survival
                   sevent
clus2                0  1
  JAKMIP2 MUTATED    6  0
  JAKMIP2 WILD-TYPE 62 11
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
                6                73 
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
                0                11 
$`JAKMIP2 MUTATED`
TCGA-A6-2672 TCGA-A6-3808 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-A010 TCGA-AA-A02Y 
       16.54         9.14         0.99         1.02        20.98        39.95 

$`JAKMIP2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
       10.92         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03         0.92        40.96        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
             0.99              0.92 
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
            39.95             51.95 
  JAKMIP2 MUTATED JAKMIP2 WILD-TYPE 
            12.84             12.00 
[1] "1.0 - 40.0 (12.8)" "0.9 - 52.0 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE"   "JAKMIP2 MUTATED" "JAKMIP2 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" "JAKMIP2 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D154V2, continuous
D154V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  JAKMIP2 MUTATED      7    3
  JAKMIP2 WILD-TYPE   70   75
        clus
vv       JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  FEMALE               7                70
  MALE                 3                75
D154V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  JAKMIP2 MUTATED      7    3
  JAKMIP2 WILD-TYPE  121   21
                               clus
vv                              JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  COLON ADENOCARCINOMA                        7               121
  COLON MUCINOUS ADENOCARCINOMA               3                21
D154V5, multiclass
    clus
vv   JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  T1               0                 4
  T2               2                31
  T3               6                97
  T4               2                12
D154V6, multiclass
    clus
vv   JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  N0               8                83
  N1               1                29
  N2               1                33
D154V7, multiclass
     clus
vv    JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  M0               10               120
  M1                0                21
  M1A               0                 1
D154V8, multiclass
     clus
vv    JAKMIP2 MUTATED JAKMIP2 WILD-TYPE
  I                 1                29
  II                7                50
  III               2                42
  IV                0                21

Clustering(155) Variable = PCDH15 MUTATION ANALYSIS
D155V1, survival
                  sevent
clus2               0  1
  PCDH15 MUTATED   11  0
  PCDH15 WILD-TYPE 57 11
  PCDH15 MUTATED PCDH15 WILD-TYPE 
              11               68 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
               0               11 
$`PCDH15 MUTATED`
TCGA-A6-2676 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3939 
       14.70         9.14         8.09         0.99         0.99         0.99 
TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00J TCGA-AA-A010 
        0.99         1.02         1.02        18.02        20.98 

$`PCDH15 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 
       10.92         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 
        0.99         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3941 
        0.92         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        30.02        34.03        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  PCDH15 MUTATED PCDH15 WILD-TYPE 
            0.99             0.92 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
           20.98            51.95 
  PCDH15 MUTATED PCDH15 WILD-TYPE 
            1.02            13.02 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (13.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PCDH15 MUTATED"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PCDH15 MUTATED"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
  "PCDH15 MUTATED"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE"   "PCDH15 MUTATED" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PCDH15 MUTATED" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" "PCDH15 WILD-TYPE" 
[1] "hr="   "8e+07"
D155V2, continuous
D155V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH15 MUTATED      9    8
  PCDH15 WILD-TYPE   68   70
        clus
vv       PCDH15 MUTATED PCDH15 WILD-TYPE
  FEMALE              9               68
  MALE                8               70
D155V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PCDH15 MUTATED     10    7
  PCDH15 WILD-TYPE  118   17
                               clus
vv                              PCDH15 MUTATED PCDH15 WILD-TYPE
  COLON ADENOCARCINOMA                      10              118
  COLON MUCINOUS ADENOCARCINOMA              7               17
D155V5, multiclass
    clus
vv   PCDH15 MUTATED PCDH15 WILD-TYPE
  T1              0                4
  T2              2               31
  T3             12               91
  T4              2               12
D155V6, multiclass
    clus
vv   PCDH15 MUTATED PCDH15 WILD-TYPE
  N0             10               81
  N1              6               24
  N2              1               33
D155V7, multiclass
     clus
vv    PCDH15 MUTATED PCDH15 WILD-TYPE
  M0              15              115
  M1               1               20
  M1A              0                1
D155V8, multiclass
     clus
vv    PCDH15 MUTATED PCDH15 WILD-TYPE
  I                0               30
  II               9               48
  III              6               38
  IV               1               20

Clustering(156) Variable = PSG7 MUTATION ANALYSIS
D156V1, survival
                sevent
clus2             0  1
  PSG7 MUTATED    3  0
  PSG7 WILD-TYPE 65 11
  PSG7 MUTATED PSG7 WILD-TYPE 
             3             76 
  PSG7 MUTATED PSG7 WILD-TYPE 
             0             11 
$`PSG7 MUTATED`
TCGA-AA-3811 TCGA-AA-A010 TCGA-AA-A02O 
        0.99        20.98         0.92 

$`PSG7 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y 
       51.95        39.95         2.01         5.03        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  PSG7 MUTATED PSG7 WILD-TYPE 
          0.92           0.92 
  PSG7 MUTATED PSG7 WILD-TYPE 
         20.98          51.95 
  PSG7 MUTATED PSG7 WILD-TYPE 
          0.99          12.00 
[1] "0.9 - 21.0 (1.0)"  "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE"   "PSG7 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "PSG7 MUTATED" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "PSG7 MUTATED" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE"   "PSG7 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "PSG7 MUTATED" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "PSG7 MUTATED" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE"   "PSG7 MUTATED" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "PSG7 MUTATED" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "PSG7 MUTATED" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"PSG7 WILD-TYPE" "PSG7 WILD-TYPE" "PSG7 WILD-TYPE" 
[1] "hr="     "2.5e+07"
D156V2, continuous
D156V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG7 MUTATED      3    2
  PSG7 WILD-TYPE   74   76
        clus
vv       PSG7 MUTATED PSG7 WILD-TYPE
  FEMALE            3             74
  MALE              2             76
D156V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG7 MUTATED      5    0
  PSG7 WILD-TYPE  123   24
                               clus
vv                              PSG7 MUTATED PSG7 WILD-TYPE
  COLON ADENOCARCINOMA                     5            123
  COLON MUCINOUS ADENOCARCINOMA            0             24
D156V5, multiclass
    clus
vv   PSG7 MUTATED PSG7 WILD-TYPE
  T1            0              4
  T2            1             32
  T3            2            101
  T4            2             12
D156V6, multiclass
    clus
vv   PSG7 MUTATED PSG7 WILD-TYPE
  N0            2             89
  N1            1             29
  N2            2             32
D156V7, multiclass
     clus
vv    PSG7 MUTATED PSG7 WILD-TYPE
  M0             4            126
  M1             1             20
  M1A            0              1
D156V8, multiclass
     clus
vv    PSG7 MUTATED PSG7 WILD-TYPE
  I              0             30
  II             2             55
  III            2             42
  IV             1             20

Clustering(157) Variable = PTPRM MUTATION ANALYSIS
D157V1, survival
                 sevent
clus2              0  1
  PTPRM MUTATED    6  3
  PTPRM WILD-TYPE 62  8
  PTPRM MUTATED PTPRM WILD-TYPE 
              9              70 
  PTPRM MUTATED PTPRM WILD-TYPE 
              3               8 
$`PTPRM MUTATED`
TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3977 
        1.02         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-A00E TCGA-AA-A00N TCGA-AA-A010 
       30.02         4.01        20.98 

$`PTPRM WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         0.99         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3837 TCGA-AA-3842 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 
        0.92         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J 
        0.99        13.94        18.02        19.00        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  PTPRM MUTATED PTPRM WILD-TYPE 
           0.99            0.92 
  PTPRM MUTATED PTPRM WILD-TYPE 
          30.02           51.95 
  PTPRM MUTATED PTPRM WILD-TYPE 
           1.02           13.02 
[1] "1.0 - 30.0 (1.0)"  "0.9 - 52.0 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PTPRM MUTATED" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PTPRM MUTATED" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "PTPRM MUTATED" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE"   "PTPRM MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PTPRM WILD-TYPE"   "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "PTPRM MUTATED" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PTPRM WILD-TYPE" "PTPRM WILD-TYPE" "PTPRM WILD-TYPE" 
[1] "hr=" "5.5"
D157V2, continuous
D157V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PTPRM MUTATED      7    7
  PTPRM WILD-TYPE   70   71
        clus
vv       PTPRM MUTATED PTPRM WILD-TYPE
  FEMALE             7              70
  MALE               7              71
D157V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PTPRM MUTATED     10    4
  PTPRM WILD-TYPE  118   20
                               clus
vv                              PTPRM MUTATED PTPRM WILD-TYPE
  COLON ADENOCARCINOMA                     10             118
  COLON MUCINOUS ADENOCARCINOMA             4              20
D157V5, multiclass
    clus
vv   PTPRM MUTATED PTPRM WILD-TYPE
  T1             0               4
  T2             1              32
  T3            10              93
  T4             3              11
D157V6, multiclass
    clus
vv   PTPRM MUTATED PTPRM WILD-TYPE
  N0            10              81
  N1             2              28
  N2             2              32
D157V7, multiclass
     clus
vv    PTPRM MUTATED PTPRM WILD-TYPE
  M0             12             118
  M1              1              20
  M1A             0               1
D157V8, multiclass
     clus
vv    PTPRM MUTATED PTPRM WILD-TYPE
  I               0              30
  II              9              48
  III             3              41
  IV              1              20

Clustering(158) Variable = SLITRK1 MUTATION ANALYSIS
D158V1, survival
                   sevent
clus2                0  1
  SLITRK1 MUTATED    5  1
  SLITRK1 WILD-TYPE 63 10
  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
                6                73 
  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
                1                10 
$`SLITRK1 MUTATED`
TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A010 
        0.99         0.99         1.02         0.99         1.02        20.98 

$`SLITRK1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       34.03        18.02        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
             0.99              0.92 
  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
            20.98             51.95 
  SLITRK1 MUTATED SLITRK1 WILD-TYPE 
            1.005            13.020 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (13.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED"   "SLITRK1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED"   "SLITRK1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE"   "SLITRK1 MUTATED"   "SLITRK1 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLITRK1 MUTATED" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" "SLITRK1 WILD-TYPE" 
[1] "hr=" "2.8"
D158V2, continuous
D158V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK1 MUTATED      3    7
  SLITRK1 WILD-TYPE   74   71
        clus
vv       SLITRK1 MUTATED SLITRK1 WILD-TYPE
  FEMALE               3                74
  MALE                 7                71
D158V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLITRK1 MUTATED      8    2
  SLITRK1 WILD-TYPE  120   22
                               clus
vv                              SLITRK1 MUTATED SLITRK1 WILD-TYPE
  COLON ADENOCARCINOMA                        8               120
  COLON MUCINOUS ADENOCARCINOMA               2                22
D158V5, multiclass
    clus
vv   SLITRK1 MUTATED SLITRK1 WILD-TYPE
  T1               0                 4
  T2               5                28
  T3               3               100
  T4               2                12
D158V6, multiclass
    clus
vv   SLITRK1 MUTATED SLITRK1 WILD-TYPE
  N0               8                83
  N1               1                29
  N2               1                33
D158V7, multiclass
     clus
vv    SLITRK1 MUTATED SLITRK1 WILD-TYPE
  M0                9               121
  M1                0                21
  M1A               0                 1
D158V8, multiclass
     clus
vv    SLITRK1 MUTATED SLITRK1 WILD-TYPE
  I                 3                27
  II                4                53
  III               2                42
  IV                0                21

Clustering(159) Variable = CTNNB1 MUTATION ANALYSIS
D159V1, survival
                  sevent
clus2               0  1
  CTNNB1 MUTATED    3  1
  CTNNB1 WILD-TYPE 65 10
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               4               75 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
               1               10 
$`CTNNB1 MUTATED`
TCGA-A6-2678 TCGA-AA-A00N TCGA-AA-A00U TCGA-AA-A01K 
       14.37         4.01        17.00        13.02 

$`CTNNB1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2683 
       13.91        16.54        17.19        14.70        17.79        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00W 
       18.02        17.00        27.02        27.02         0.99        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
            4.01             0.92 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
           17.00            51.95 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
          13.695           10.920 
[1] "4.0 - 17.0 (13.7)" "0.9 - 52.0 (10.9)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE"   "CTNNB1 MUTATED" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" "CTNNB1 WILD-TYPE" 
[1] "hr=" "2.1"
D159V2, continuous
D159V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNB1 MUTATED      4    3
  CTNNB1 WILD-TYPE   73   75
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  FEMALE              4               73
  MALE                3               75
D159V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CTNNB1 MUTATED      6    1
  CTNNB1 WILD-TYPE  122   23
                               clus
vv                              CTNNB1 MUTATED CTNNB1 WILD-TYPE
  COLON ADENOCARCINOMA                       6              122
  COLON MUCINOUS ADENOCARCINOMA              1               23
D159V5, multiclass
    clus
vv   CTNNB1 MUTATED CTNNB1 WILD-TYPE
  T1              0                4
  T2              0               33
  T3              6               97
  T4              1               13
D159V6, multiclass
    clus
vv   CTNNB1 MUTATED CTNNB1 WILD-TYPE
  N0              3               88
  N1              3               27
  N2              1               33
D159V7, multiclass
     clus
vv    CTNNB1 MUTATED CTNNB1 WILD-TYPE
  M0               6              124
  M1               1               20
  M1A              0                1
D159V8, multiclass
     clus
vv    CTNNB1 MUTATED CTNNB1 WILD-TYPE
  I                0               30
  II               3               54
  III              3               41
  IV               1               20

Clustering(160) Variable = RPS23 MUTATION ANALYSIS
D160V1, survival
                 sevent
clus2              0  1
  RPS23 MUTATED    2  0
  RPS23 WILD-TYPE 66 11
  RPS23 MUTATED RPS23 WILD-TYPE 
              2              77 
  RPS23 MUTATED RPS23 WILD-TYPE 
              0              11 
$`RPS23 MUTATED`
TCGA-AA-3977 TCGA-AA-A01V 
        1.02        35.01 

$`RPS23 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
       35.01         1.02        33.04        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  RPS23 MUTATED RPS23 WILD-TYPE 
           1.02            0.92 
  RPS23 MUTATED RPS23 WILD-TYPE 
          35.01           51.95 
  RPS23 MUTATED RPS23 WILD-TYPE 
         18.015          12.000 
[1] "1.0 - 35.0 (18.0)" "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE"   "RPS23 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "RPS23 MUTATED" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE"   "RPS23 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "RPS23 MUTATED" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE"   "RPS23 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "RPS23 MUTATED" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
[1] "Remove cluster labels:" "RPS23 MUTATED"         
clus
  RPS23 MUTATED RPS23 WILD-TYPE 
              2              77 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3986 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D      TCGA-AA-A00E 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K      TCGA-AA-A00L 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01X 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029      TCGA-AA-A02F 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O      TCGA-AA-A02W 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J      TCGA-AY-4070 
"RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" "RPS23 WILD-TYPE" 
     TCGA-AY-4071 
"RPS23 WILD-TYPE" 
D160V2, continuous
D160V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RPS23 MUTATED      1    3
  RPS23 WILD-TYPE   76   75
        clus
vv       RPS23 MUTATED RPS23 WILD-TYPE
  FEMALE             1              76
  MALE               3              75
D160V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RPS23 MUTATED      4    0
  RPS23 WILD-TYPE  124   24
                               clus
vv                              RPS23 MUTATED RPS23 WILD-TYPE
  COLON ADENOCARCINOMA                      4             124
  COLON MUCINOUS ADENOCARCINOMA             0              24
D160V5, multiclass
    clus
vv   RPS23 MUTATED RPS23 WILD-TYPE
  T1             0               4
  T2             2              31
  T3             2             101
  T4             0              14
D160V6, multiclass
    clus
vv   RPS23 MUTATED RPS23 WILD-TYPE
  N0             3              88
  N1             1              29
  N2             0              34
D160V7, multiclass
     clus
vv    RPS23 MUTATED RPS23 WILD-TYPE
  M0              3             127
  M1              0              21
  M1A             0               1
D160V8, multiclass
     clus
vv    RPS23 MUTATED RPS23 WILD-TYPE
  I               1              29
  II              1              56
  III             1              43
  IV              0              21

Clustering(161) Variable = DOCK2 MUTATION ANALYSIS
D161V1, survival
                 sevent
clus2              0  1
  DOCK2 MUTATED    8  1
  DOCK2 WILD-TYPE 60 10
  DOCK2 MUTATED DOCK2 WILD-TYPE 
              9              70 
  DOCK2 MUTATED DOCK2 WILD-TYPE 
              1              10 
$`DOCK2 MUTATED`
TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A00D TCGA-AA-A00J 
        0.99         0.99         1.02         1.02        19.00        18.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01V 
        4.01        20.98        35.01 

$`DOCK2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00E 
        1.02         0.99         0.99        13.94        18.02        30.02 
TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       34.03        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
        1.02        33.04        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  DOCK2 MUTATED DOCK2 WILD-TYPE 
           0.99            0.92 
  DOCK2 MUTATED DOCK2 WILD-TYPE 
          35.01           51.95 
  DOCK2 MUTATED DOCK2 WILD-TYPE 
           4.01           12.00 
[1] "1.0 - 35.0 (4.0)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DOCK2 WILD-TYPE"   "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
  "DOCK2 MUTATED" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" "DOCK2 WILD-TYPE" 
[1] "hr=" "1.1"
D161V2, continuous
D161V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK2 MUTATED      8    8
  DOCK2 WILD-TYPE   69   70
        clus
vv       DOCK2 MUTATED DOCK2 WILD-TYPE
  FEMALE             8              69
  MALE               8              70
D161V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DOCK2 MUTATED     11    4
  DOCK2 WILD-TYPE  117   20
                               clus
vv                              DOCK2 MUTATED DOCK2 WILD-TYPE
  COLON ADENOCARCINOMA                     11             117
  COLON MUCINOUS ADENOCARCINOMA             4              20
D161V5, multiclass
    clus
vv   DOCK2 MUTATED DOCK2 WILD-TYPE
  T1             0               4
  T2             3              30
  T3             9              94
  T4             4              10
D161V6, multiclass
    clus
vv   DOCK2 MUTATED DOCK2 WILD-TYPE
  N0            13              78
  N1             1              29
  N2             2              32
D161V7, multiclass
     clus
vv    DOCK2 MUTATED DOCK2 WILD-TYPE
  M0             15             115
  M1              0              21
  M1A             0               1
D161V8, multiclass
     clus
vv    DOCK2 MUTATED DOCK2 WILD-TYPE
  I               2              28
  II             10              47
  III             3              41
  IV              0              21

Clustering(162) Variable = ME1 MUTATION ANALYSIS
D162V1, survival
               sevent
clus2            0  1
  ME1 MUTATED    4  0
  ME1 WILD-TYPE 64 11
  ME1 MUTATED ME1 WILD-TYPE 
            4            75 
  ME1 MUTATED ME1 WILD-TYPE 
            0            11 
$`ME1 MUTATED`
TCGA-AA-3811 TCGA-AA-3842 TCGA-AA-3947 TCGA-AA-A01I 
        0.99         1.02         0.99        12.00 

$`ME1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         0.99         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  ME1 MUTATED ME1 WILD-TYPE 
         0.99          0.92 
  ME1 MUTATED ME1 WILD-TYPE 
        12.00         51.95 
  ME1 MUTATED ME1 WILD-TYPE 
        1.005        13.020 
[1] "1.0 - 12.0 (1.0)"  "0.9 - 52.0 (13.0)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
  "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"ME1 WILD-TYPE" "ME1 WILD-TYPE"   "ME1 MUTATED" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" "ME1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D162V2, continuous
D162V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  ME1 MUTATED      4    3
  ME1 WILD-TYPE   73   75
        clus
vv       ME1 MUTATED ME1 WILD-TYPE
  FEMALE           4            73
  MALE             3            75
D162V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  ME1 MUTATED      5    2
  ME1 WILD-TYPE  123   22
                               clus
vv                              ME1 MUTATED ME1 WILD-TYPE
  COLON ADENOCARCINOMA                    5           123
  COLON MUCINOUS ADENOCARCINOMA           2            22
D162V5, multiclass
    clus
vv   ME1 MUTATED ME1 WILD-TYPE
  T1           0             4
  T2           2            31
  T3           3           100
  T4           2            12
D162V6, multiclass
    clus
vv   ME1 MUTATED ME1 WILD-TYPE
  N0           3            88
  N1           2            28
  N2           2            32
D162V7, multiclass
     clus
vv    ME1 MUTATED ME1 WILD-TYPE
  M0            6           124
  M1            1            20
  M1A           0             1
D162V8, multiclass
     clus
vv    ME1 MUTATED ME1 WILD-TYPE
  I             1            29
  II            2            55
  III           3            41
  IV            1            20

Clustering(163) Variable = SIGLEC8 MUTATION ANALYSIS
D163V1, survival
                   sevent
clus2                0  1
  SIGLEC8 MUTATED    1  0
  SIGLEC8 WILD-TYPE 67 11
  SIGLEC8 MUTATED SIGLEC8 WILD-TYPE 
                1                78 
  SIGLEC8 MUTATED SIGLEC8 WILD-TYPE 
                0                11 
$`SIGLEC8 MUTATED`
TCGA-AA-3710 
        1.02 

$`SIGLEC8 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  SIGLEC8 MUTATED SIGLEC8 WILD-TYPE 
             1.02              0.92 
  SIGLEC8 MUTATED SIGLEC8 WILD-TYPE 
             1.02             51.95 
  SIGLEC8 MUTATED SIGLEC8 WILD-TYPE 
             1.02             12.00 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 52.0 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SIGLEC8 WILD-TYPE"   "SIGLEC8 MUTATED" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SIGLEC8 WILD-TYPE"   "SIGLEC8 MUTATED" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SIGLEC8 WILD-TYPE"   "SIGLEC8 MUTATED" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
[1] "Remove cluster labels:" "SIGLEC8 MUTATED"       
clus
  SIGLEC8 MUTATED SIGLEC8 WILD-TYPE 
                1                78 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3715        TCGA-AA-3811        TCGA-AA-3818 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844        TCGA-AA-3846 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877        TCGA-AA-3939 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949        TCGA-AA-3952 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977        TCGA-AA-3986 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A010 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P        TCGA-AA-A01Q 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T        TCGA-AA-A01V 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024        TCGA-AA-A029 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02O 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F        TCGA-AA-A03J 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
       TCGA-AY-4070        TCGA-AY-4071 
"SIGLEC8 WILD-TYPE" "SIGLEC8 WILD-TYPE" 
D163V2, continuous
D163V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SIGLEC8 MUTATED      4    2
  SIGLEC8 WILD-TYPE   73   76
        clus
vv       SIGLEC8 MUTATED SIGLEC8 WILD-TYPE
  FEMALE               4                73
  MALE                 2                76
D163V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SIGLEC8 MUTATED      5    1
  SIGLEC8 WILD-TYPE  123   23
                               clus
vv                              SIGLEC8 MUTATED SIGLEC8 WILD-TYPE
  COLON ADENOCARCINOMA                        5               123
  COLON MUCINOUS ADENOCARCINOMA               1                23
D163V5, multiclass
    clus
vv   SIGLEC8 MUTATED SIGLEC8 WILD-TYPE
  T1               0                 4
  T2               1                32
  T3               5                98
  T4               0                14
D163V6, multiclass
    clus
vv   SIGLEC8 MUTATED SIGLEC8 WILD-TYPE
  N0               4                87
  N1               1                29
  N2               1                33
D163V7, multiclass
     clus
vv    SIGLEC8 MUTATED SIGLEC8 WILD-TYPE
  M0                5               125
  M1                1                20
  M1A               0                 1
D163V8, multiclass
     clus
vv    SIGLEC8 MUTATED SIGLEC8 WILD-TYPE
  I                 1                29
  II                3                54
  III               1                43
  IV                1                20

Clustering(164) Variable = ACTBL2 MUTATION ANALYSIS
D164V1, survival
                  sevent
clus2               0  1
  ACTBL2 MUTATED    5  0
  ACTBL2 WILD-TYPE 63 11
  ACTBL2 MUTATED ACTBL2 WILD-TYPE 
               5               74 
  ACTBL2 MUTATED ACTBL2 WILD-TYPE 
               0               11 
$`ACTBL2 MUTATED`
TCGA-AA-3710 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00J 
        1.02         0.99         1.02        30.02        18.02 

$`ACTBL2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
       19.00        34.03        18.02        17.00         4.01        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 
       27.02         0.99        17.00        14.99        21.99        20.98 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  ACTBL2 MUTATED ACTBL2 WILD-TYPE 
            0.99             0.92 
  ACTBL2 MUTATED ACTBL2 WILD-TYPE 
           30.02            51.95 
  ACTBL2 MUTATED ACTBL2 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 30.0 (1.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACTBL2 WILD-TYPE"   "ACTBL2 MUTATED" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE"   "ACTBL2 MUTATED" "ACTBL2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE"   "ACTBL2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "ACTBL2 MUTATED" "ACTBL2 WILD-TYPE"   "ACTBL2 MUTATED" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACTBL2 WILD-TYPE"   "ACTBL2 MUTATED" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE"   "ACTBL2 MUTATED" "ACTBL2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE"   "ACTBL2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "ACTBL2 MUTATED" "ACTBL2 WILD-TYPE"   "ACTBL2 MUTATED" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ACTBL2 WILD-TYPE"   "ACTBL2 MUTATED" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE"   "ACTBL2 MUTATED" "ACTBL2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE"   "ACTBL2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "ACTBL2 MUTATED" "ACTBL2 WILD-TYPE"   "ACTBL2 MUTATED" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" "ACTBL2 WILD-TYPE" 
[1] "hr="     "7.3e+07"
D164V2, continuous
D164V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACTBL2 MUTATED      4    4
  ACTBL2 WILD-TYPE   73   74
        clus
vv       ACTBL2 MUTATED ACTBL2 WILD-TYPE
  FEMALE              4               73
  MALE                4               74
D164V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACTBL2 MUTATED      5    3
  ACTBL2 WILD-TYPE  123   21
                               clus
vv                              ACTBL2 MUTATED ACTBL2 WILD-TYPE
  COLON ADENOCARCINOMA                       5              123
  COLON MUCINOUS ADENOCARCINOMA              3               21
D164V5, multiclass
    clus
vv   ACTBL2 MUTATED ACTBL2 WILD-TYPE
  T1              0                4
  T2              2               31
  T3              4               99
  T4              2               12
D164V6, multiclass
    clus
vv   ACTBL2 MUTATED ACTBL2 WILD-TYPE
  N0              7               84
  N1              1               29
  N2              0               34
D164V7, multiclass
     clus
vv    ACTBL2 MUTATED ACTBL2 WILD-TYPE
  M0               7              123
  M1               0               21
  M1A              0                1
D164V8, multiclass
     clus
vv    ACTBL2 MUTATED ACTBL2 WILD-TYPE
  I                1               29
  II               5               52
  III              1               43
  IV               0               21

Clustering(165) Variable = ZMYM6 MUTATION ANALYSIS
D165V1, survival
                 sevent
clus2              0  1
  ZMYM6 MUTATED    3  2
  ZMYM6 WILD-TYPE 65  9
  ZMYM6 MUTATED ZMYM6 WILD-TYPE 
              5              74 
  ZMYM6 MUTATED ZMYM6 WILD-TYPE 
              2               9 
$`ZMYM6 MUTATED`
TCGA-AA-3846 TCGA-AA-A00A TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A03F 
        0.99        18.02         4.01        20.98        18.02 

$`ZMYM6 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03J 
        2.01         5.03         0.92        40.96        39.95        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  ZMYM6 MUTATED ZMYM6 WILD-TYPE 
           0.99            0.92 
  ZMYM6 MUTATED ZMYM6 WILD-TYPE 
          20.98           51.95 
  ZMYM6 MUTATED ZMYM6 WILD-TYPE 
          18.02           11.46 
[1] "1.0 - 21.0 (18.0)" "0.9 - 52.0 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE"   "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZMYM6 WILD-TYPE"   "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE"   "ZMYM6 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE"   "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZMYM6 WILD-TYPE"   "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE"   "ZMYM6 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
  "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE"   "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ZMYM6 WILD-TYPE"   "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ZMYM6 MUTATED" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE"   "ZMYM6 MUTATED" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" "ZMYM6 WILD-TYPE" 
[1] "hr=" "3.2"
D165V2, continuous
D165V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZMYM6 MUTATED      5    4
  ZMYM6 WILD-TYPE   72   74
        clus
vv       ZMYM6 MUTATED ZMYM6 WILD-TYPE
  FEMALE             5              72
  MALE               4              74
D165V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZMYM6 MUTATED      7    2
  ZMYM6 WILD-TYPE  121   22
                               clus
vv                              ZMYM6 MUTATED ZMYM6 WILD-TYPE
  COLON ADENOCARCINOMA                      7             121
  COLON MUCINOUS ADENOCARCINOMA             2              22
D165V5, multiclass
    clus
vv   ZMYM6 MUTATED ZMYM6 WILD-TYPE
  T1             0               4
  T2             0              33
  T3             7              96
  T4             2              12
D165V6, multiclass
    clus
vv   ZMYM6 MUTATED ZMYM6 WILD-TYPE
  N0             7              84
  N1             1              29
  N2             1              33
D165V7, multiclass
     clus
vv    ZMYM6 MUTATED ZMYM6 WILD-TYPE
  M0              8             122
  M1              1              20
  M1A             0               1
D165V8, multiclass
     clus
vv    ZMYM6 MUTATED ZMYM6 WILD-TYPE
  I               0              30
  II              7              50
  III             1              43
  IV              1              20

Clustering(166) Variable = PTN MUTATION ANALYSIS
D166V1, survival
               sevent
clus2            0  1
  PTN MUTATED    3  0
  PTN WILD-TYPE 65 11
  PTN MUTATED PTN WILD-TYPE 
            3            76 
  PTN MUTATED PTN WILD-TYPE 
            0            11 
$`PTN MUTATED`
TCGA-AA-3986 TCGA-AA-A00E TCGA-AA-A01R 
        0.99        30.02        35.01 

$`PTN WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        18.02        19.00        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S 
       12.00        12.00        13.02        38.07         1.02         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  PTN MUTATED PTN WILD-TYPE 
         0.99          0.92 
  PTN MUTATED PTN WILD-TYPE 
        35.01         51.95 
  PTN MUTATED PTN WILD-TYPE 
        30.02         11.46 
[1] "1.0 - 35.0 (30.0)" "0.9 - 52.0 (11.5)"
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-A6-2670    TCGA-A6-2672    TCGA-A6-2674    TCGA-A6-2676    TCGA-A6-2677 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-A6-2678    TCGA-A6-2683    TCGA-A6-3807    TCGA-A6-3808    TCGA-A6-3810 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3518    TCGA-AA-3526    TCGA-AA-3555    TCGA-AA-3562    TCGA-AA-3666 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3679    TCGA-AA-3685    TCGA-AA-3710    TCGA-AA-3715    TCGA-AA-3811 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3818    TCGA-AA-3837    TCGA-AA-3842    TCGA-AA-3844    TCGA-AA-3846 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3848    TCGA-AA-3854    TCGA-AA-3877    TCGA-AA-3939    TCGA-AA-3941 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3947    TCGA-AA-3949    TCGA-AA-3952    TCGA-AA-3966    TCGA-AA-3975 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-3977    TCGA-AA-3986    TCGA-AA-A004    TCGA-AA-A00A    TCGA-AA-A00D 
"PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A00E    TCGA-AA-A00F    TCGA-AA-A00J    TCGA-AA-A00K    TCGA-AA-A00L 
  "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A00N    TCGA-AA-A00O    TCGA-AA-A00Q    TCGA-AA-A00R    TCGA-AA-A00U 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A00W    TCGA-AA-A00Z    TCGA-AA-A010    TCGA-AA-A017    TCGA-AA-A01D 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A01F    TCGA-AA-A01G    TCGA-AA-A01I    TCGA-AA-A01K    TCGA-AA-A01P 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A01Q    TCGA-AA-A01R    TCGA-AA-A01S    TCGA-AA-A01T    TCGA-AA-A01V 
"PTN WILD-TYPE"   "PTN MUTATED" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A01X    TCGA-AA-A01Z    TCGA-AA-A024    TCGA-AA-A029    TCGA-AA-A02F 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A02H    TCGA-AA-A02J    TCGA-AA-A02O    TCGA-AA-A02W    TCGA-AA-A02Y 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
   TCGA-AA-A03F    TCGA-AA-A03J    TCGA-AY-4070    TCGA-AY-4071 
"PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" "PTN WILD-TYPE" 
[1] "hr="     "2.6e+07"
D166V2, continuous
D166V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  PTN MUTATED      1    3
  PTN WILD-TYPE   76   75
        clus
vv       PTN MUTATED PTN WILD-TYPE
  FEMALE           1            76
  MALE             3            75
D166V4, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  PTN MUTATED      2    2
  PTN WILD-TYPE  126   22
                               clus
vv                              PTN MUTATED PTN WILD-TYPE
  COLON ADENOCARCINOMA                    2           126
  COLON MUCINOUS ADENOCARCINOMA           2            22
D166V5, multiclass
    clus
vv   PTN MUTATED PTN WILD-TYPE
  T1           0             4
  T2           2            31
  T3           2           101
  T4           0            14
D166V6, multiclass
    clus
vv   PTN MUTATED PTN WILD-TYPE
  N0           3            88
  N1           0            30
  N2           1            33
D166V7, multiclass
     clus
vv    PTN MUTATED PTN WILD-TYPE
  M0            4           126
  M1            0            21
  M1A           0             1
D166V8, multiclass
     clus
vv    PTN MUTATED PTN WILD-TYPE
  I             2            28
  II            1            56
  III           1            43
  IV            0            21

Clustering(167) Variable = SPATA16 MUTATION ANALYSIS
D167V1, survival
                   sevent
clus2                0  1
  SPATA16 MUTATED    5  1
  SPATA16 WILD-TYPE 63 10
  SPATA16 MUTATED SPATA16 WILD-TYPE 
                6                73 
  SPATA16 MUTATED SPATA16 WILD-TYPE 
                1                10 
$`SPATA16 MUTATED`
TCGA-A6-2676 TCGA-A6-3807 TCGA-AA-3518 TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A01I 
       14.70        10.92         1.02         1.02         4.01        12.00 

$`SPATA16 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 
        9.14         8.09         0.99         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 
       27.02         0.99        17.00        14.99        21.99        20.98 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01K TCGA-AA-A01P 
       15.02         0.99        13.02        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  SPATA16 MUTATED SPATA16 WILD-TYPE 
             1.02              0.92 
  SPATA16 MUTATED SPATA16 WILD-TYPE 
            14.70             51.95 
  SPATA16 MUTATED SPATA16 WILD-TYPE 
            7.465            13.020 
[1] "1.0 - 14.7 (7.5)"  "0.9 - 52.0 (13.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE"   "SPATA16 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE"   "SPATA16 MUTATED" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE"   "SPATA16 MUTATED" "SPATA16 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SPATA16 WILD-TYPE"   "SPATA16 MUTATED" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SPATA16 WILD-TYPE"   "SPATA16 MUTATED" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SPATA16 WILD-TYPE"   "SPATA16 MUTATED" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE"   "SPATA16 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE"   "SPATA16 MUTATED" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE"   "SPATA16 MUTATED" "SPATA16 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SPATA16 WILD-TYPE"   "SPATA16 MUTATED" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SPATA16 WILD-TYPE"   "SPATA16 MUTATED" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SPATA16 WILD-TYPE"   "SPATA16 MUTATED" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE"   "SPATA16 MUTATED" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE"   "SPATA16 MUTATED" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE"   "SPATA16 MUTATED" "SPATA16 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SPATA16 WILD-TYPE"   "SPATA16 MUTATED" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SPATA16 WILD-TYPE"   "SPATA16 MUTATED" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SPATA16 WILD-TYPE"   "SPATA16 MUTATED" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" "SPATA16 WILD-TYPE" 
[1] "hr=" "1.8"
D167V2, continuous
D167V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPATA16 MUTATED      5    2
  SPATA16 WILD-TYPE   72   76
        clus
vv       SPATA16 MUTATED SPATA16 WILD-TYPE
  FEMALE               5                72
  MALE                 2                76
D167V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPATA16 MUTATED      3    3
  SPATA16 WILD-TYPE  125   21
                               clus
vv                              SPATA16 MUTATED SPATA16 WILD-TYPE
  COLON ADENOCARCINOMA                        3               125
  COLON MUCINOUS ADENOCARCINOMA               3                21
D167V5, multiclass
    clus
vv   SPATA16 MUTATED SPATA16 WILD-TYPE
  T1               0                 4
  T2               1                32
  T3               4                99
  T4               1                13
D167V6, multiclass
    clus
vv   SPATA16 MUTATED SPATA16 WILD-TYPE
  N0               6                85
  N1               0                30
  N2               1                33
D167V7, multiclass
     clus
vv    SPATA16 MUTATED SPATA16 WILD-TYPE
  M0                7               123
  M1                0                21
  M1A               0                 1
D167V8, multiclass
     clus
vv    SPATA16 MUTATED SPATA16 WILD-TYPE
  I                 1                29
  II                5                52
  III               1                43
  IV                0                21

Clustering(168) Variable = C20ORF71 MUTATION ANALYSIS
D168V1, survival
                    sevent
clus2                 0  1
  C20ORF71 MUTATED    1  0
  C20ORF71 WILD-TYPE 67 11
  C20ORF71 MUTATED C20ORF71 WILD-TYPE 
                 1                 78 
  C20ORF71 MUTATED C20ORF71 WILD-TYPE 
                 0                 11 
$`C20ORF71 MUTATED`
TCGA-AA-3854 
        1.02 

$`C20ORF71 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         0.99         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  C20ORF71 MUTATED C20ORF71 WILD-TYPE 
              1.02               0.92 
  C20ORF71 MUTATED C20ORF71 WILD-TYPE 
              1.02              51.95 
  C20ORF71 MUTATED C20ORF71 WILD-TYPE 
              1.02              12.00 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 52.0 (12.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE"   "C20ORF71 MUTATED" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AY-4071 
"C20ORF71 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE"   "C20ORF71 MUTATED" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AY-4071 
"C20ORF71 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE"   "C20ORF71 MUTATED" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AY-4071 
"C20ORF71 WILD-TYPE" 
[1] "Remove cluster labels:" "C20ORF71 MUTATED"      
clus
  C20ORF71 MUTATED C20ORF71 WILD-TYPE 
                 1                 78 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3877 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3939         TCGA-AA-3941         TCGA-AA-3947 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3949         TCGA-AA-3952         TCGA-AA-3966 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-3975         TCGA-AA-3977         TCGA-AA-3986 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A004         TCGA-AA-A00A         TCGA-AA-A00D 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00E         TCGA-AA-A00F         TCGA-AA-A00J 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00K         TCGA-AA-A00L         TCGA-AA-A00N 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00O         TCGA-AA-A00Q         TCGA-AA-A00R 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A00U         TCGA-AA-A00W         TCGA-AA-A00Z 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A010         TCGA-AA-A017         TCGA-AA-A01D 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01F         TCGA-AA-A01G         TCGA-AA-A01I 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01K         TCGA-AA-A01P         TCGA-AA-A01Q 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01R         TCGA-AA-A01S         TCGA-AA-A01T 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A01V         TCGA-AA-A01X         TCGA-AA-A01Z 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A024         TCGA-AA-A029         TCGA-AA-A02F 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A02H         TCGA-AA-A02J         TCGA-AA-A02O 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A02W         TCGA-AA-A02Y         TCGA-AA-A03F 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
        TCGA-AA-A03J         TCGA-AY-4070         TCGA-AY-4071 
"C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" "C20ORF71 WILD-TYPE" 
D168V2, continuous
D168V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C20ORF71 MUTATED      2    2
  C20ORF71 WILD-TYPE   75   76
        clus
vv       C20ORF71 MUTATED C20ORF71 WILD-TYPE
  FEMALE                2                 75
  MALE                  2                 76
D168V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C20ORF71 MUTATED      3    1
  C20ORF71 WILD-TYPE  125   23
                               clus
vv                              C20ORF71 MUTATED C20ORF71 WILD-TYPE
  COLON ADENOCARCINOMA                         3                125
  COLON MUCINOUS ADENOCARCINOMA                1                 23
D168V5, multiclass
    clus
vv   C20ORF71 MUTATED C20ORF71 WILD-TYPE
  T1                0                  4
  T2                2                 31
  T3                2                101
  T4                0                 14
D168V6, multiclass
    clus
vv   C20ORF71 MUTATED C20ORF71 WILD-TYPE
  N0                3                 88
  N1                1                 29
  N2                0                 34
D168V7, multiclass
     clus
vv    C20ORF71 MUTATED C20ORF71 WILD-TYPE
  M0                 4                126
  M1                 0                 21
  M1A                0                  1
D168V8, multiclass
     clus
vv    C20ORF71 MUTATED C20ORF71 WILD-TYPE
  I                  1                 29
  II                 2                 55
  III                1                 43
  IV                 0                 21

Clustering(169) Variable = CD180 MUTATION ANALYSIS
D169V1, survival
                 sevent
clus2              0  1
  CD180 MUTATED    4  0
  CD180 WILD-TYPE 64 11
  CD180 MUTATED CD180 WILD-TYPE 
              4              75 
  CD180 MUTATED CD180 WILD-TYPE 
              0              11 
$`CD180 MUTATED`
TCGA-A6-2672 TCGA-AA-A00A TCGA-AA-A00R TCGA-AA-A010 
       16.54        18.02         0.99        20.98 

$`CD180 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W 
       17.00         4.01        27.02        27.02        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  CD180 MUTATED CD180 WILD-TYPE 
           0.99            0.92 
  CD180 MUTATED CD180 WILD-TYPE 
          20.98           51.95 
  CD180 MUTATED CD180 WILD-TYPE 
          17.28           10.92 
[1] "1.0 - 21.0 (17.3)" "0.9 - 52.0 (10.9)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CD180 WILD-TYPE"   "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CD180 WILD-TYPE" "CD180 WILD-TYPE"   "CD180 MUTATED" "CD180 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CD180 WILD-TYPE"   "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CD180 WILD-TYPE" "CD180 WILD-TYPE"   "CD180 MUTATED" "CD180 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"CD180 WILD-TYPE"   "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"CD180 WILD-TYPE" "CD180 WILD-TYPE"   "CD180 MUTATED" "CD180 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
  "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "CD180 MUTATED" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"CD180 WILD-TYPE" "CD180 WILD-TYPE" "CD180 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D169V2, continuous
D169V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CD180 MUTATED      5    3
  CD180 WILD-TYPE   72   75
        clus
vv       CD180 MUTATED CD180 WILD-TYPE
  FEMALE             5              72
  MALE               3              75
D169V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CD180 MUTATED      8    0
  CD180 WILD-TYPE  120   24
                               clus
vv                              CD180 MUTATED CD180 WILD-TYPE
  COLON ADENOCARCINOMA                      8             120
  COLON MUCINOUS ADENOCARCINOMA             0              24
D169V5, multiclass
    clus
vv   CD180 MUTATED CD180 WILD-TYPE
  T1             0               4
  T2             2              31
  T3             5              98
  T4             1              13
D169V6, multiclass
    clus
vv   CD180 MUTATED CD180 WILD-TYPE
  N0             6              85
  N1             2              28
  N2             0              34
D169V7, multiclass
     clus
vv    CD180 MUTATED CD180 WILD-TYPE
  M0              7             123
  M1              0              21
  M1A             0               1
D169V8, multiclass
     clus
vv    CD180 MUTATED CD180 WILD-TYPE
  I               1              29
  II              4              53
  III             2              42
  IV              0              21

Clustering(170) Variable = DPP10 MUTATION ANALYSIS
D170V1, survival
                 sevent
clus2              0  1
  DPP10 MUTATED    4  1
  DPP10 WILD-TYPE 64 10
  DPP10 MUTATED DPP10 WILD-TYPE 
              5              74 
  DPP10 MUTATED DPP10 WILD-TYPE 
              1              10 
$`DPP10 MUTATED`
TCGA-AA-3848 TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A010 TCGA-AA-A01R 
        0.99         4.01        27.02        20.98        35.01 

$`DPP10 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       18.02        17.00        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07         1.02         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  DPP10 MUTATED DPP10 WILD-TYPE 
           0.99            0.92 
  DPP10 MUTATED DPP10 WILD-TYPE 
          35.01           51.95 
  DPP10 MUTATED DPP10 WILD-TYPE 
          20.98           11.46 
[1] "1.0 - 35.0 (21.0)" "0.9 - 52.0 (11.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DPP10 WILD-TYPE"   "DPP10 MUTATED"   "DPP10 MUTATED" "DPP10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DPP10 WILD-TYPE"   "DPP10 MUTATED"   "DPP10 MUTATED" "DPP10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"DPP10 WILD-TYPE"   "DPP10 MUTATED"   "DPP10 MUTATED" "DPP10 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"DPP10 WILD-TYPE"   "DPP10 MUTATED" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"DPP10 WILD-TYPE" "DPP10 WILD-TYPE" "DPP10 WILD-TYPE" 
[1] "hr=" "1.4"
D170V2, continuous
D170V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DPP10 MUTATED      4    5
  DPP10 WILD-TYPE   73   73
        clus
vv       DPP10 MUTATED DPP10 WILD-TYPE
  FEMALE             4              73
  MALE               5              73
D170V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DPP10 MUTATED      6    3
  DPP10 WILD-TYPE  122   21
                               clus
vv                              DPP10 MUTATED DPP10 WILD-TYPE
  COLON ADENOCARCINOMA                      6             122
  COLON MUCINOUS ADENOCARCINOMA             3              21
D170V5, multiclass
    clus
vv   DPP10 MUTATED DPP10 WILD-TYPE
  T1             0               4
  T2             2              31
  T3             5              98
  T4             2              12
D170V6, multiclass
    clus
vv   DPP10 MUTATED DPP10 WILD-TYPE
  N0             4              87
  N1             1              29
  N2             4              30
D170V7, multiclass
     clus
vv    DPP10 MUTATED DPP10 WILD-TYPE
  M0              9             121
  M1              0              21
  M1A             0               1
D170V8, multiclass
     clus
vv    DPP10 MUTATED DPP10 WILD-TYPE
  I               1              29
  II              3              54
  III             5              39
  IV              0              21

Clustering(171) Variable = OR10S1 MUTATION ANALYSIS
D171V1, survival
                  sevent
clus2               0  1
  OR10S1 MUTATED    3  0
  OR10S1 WILD-TYPE 65 11
  OR10S1 MUTATED OR10S1 WILD-TYPE 
               3               76 
  OR10S1 MUTATED OR10S1 WILD-TYPE 
               0               11 
$`OR10S1 MUTATED`
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-A010 
        1.02         0.99        20.98 

$`OR10S1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  OR10S1 MUTATED OR10S1 WILD-TYPE 
            0.99             0.92 
  OR10S1 MUTATED OR10S1 WILD-TYPE 
           20.98            51.95 
  OR10S1 MUTATED OR10S1 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR10S1 WILD-TYPE"   "OR10S1 MUTATED"   "OR10S1 MUTATED" "OR10S1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR10S1 MUTATED" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR10S1 WILD-TYPE"   "OR10S1 MUTATED"   "OR10S1 MUTATED" "OR10S1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR10S1 MUTATED" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR10S1 WILD-TYPE"   "OR10S1 MUTATED"   "OR10S1 MUTATED" "OR10S1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR10S1 MUTATED" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" "OR10S1 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D171V2, continuous
D171V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10S1 MUTATED      3    3
  OR10S1 WILD-TYPE   74   75
        clus
vv       OR10S1 MUTATED OR10S1 WILD-TYPE
  FEMALE              3               74
  MALE                3               75
D171V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10S1 MUTATED      5    1
  OR10S1 WILD-TYPE  123   23
                               clus
vv                              OR10S1 MUTATED OR10S1 WILD-TYPE
  COLON ADENOCARCINOMA                       5              123
  COLON MUCINOUS ADENOCARCINOMA              1               23
D171V5, multiclass
    clus
vv   OR10S1 MUTATED OR10S1 WILD-TYPE
  T1              0                4
  T2              1               32
  T3              4               99
  T4              1               13
D171V6, multiclass
    clus
vv   OR10S1 MUTATED OR10S1 WILD-TYPE
  N0              5               86
  N1              0               30
  N2              1               33
D171V7, multiclass
     clus
vv    OR10S1 MUTATED OR10S1 WILD-TYPE
  M0               5              125
  M1               1               20
  M1A              0                1
D171V8, multiclass
     clus
vv    OR10S1 MUTATED OR10S1 WILD-TYPE
  I                1               29
  II               4               53
  III              0               44
  IV               1               20

Clustering(172) Variable = OR13C3 MUTATION ANALYSIS
D172V1, survival
                  sevent
clus2               0  1
  OR13C3 MUTATED    2  0
  OR13C3 WILD-TYPE 66 11
  OR13C3 MUTATED OR13C3 WILD-TYPE 
               2               77 
  OR13C3 MUTATED OR13C3 WILD-TYPE 
               0               11 
$`OR13C3 MUTATED`
TCGA-AA-3854 TCGA-AA-3977 
        1.02         1.02 

$`OR13C3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         0.99         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  OR13C3 MUTATED OR13C3 WILD-TYPE 
            1.02             0.92 
  OR13C3 MUTATED OR13C3 WILD-TYPE 
            1.02            51.95 
  OR13C3 MUTATED OR13C3 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE"   "OR13C3 MUTATED" "OR13C3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE"   "OR13C3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE"   "OR13C3 MUTATED" "OR13C3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE"   "OR13C3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE"   "OR13C3 MUTATED" "OR13C3 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE"   "OR13C3 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
[1] "Remove cluster labels:" "OR13C3 MUTATED"        
clus
  OR13C3 MUTATED OR13C3 WILD-TYPE 
               2               77 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3877       TCGA-AA-3939 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949       TCGA-AA-3952 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3986       TCGA-AA-A004 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q       TCGA-AA-A01R 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V       TCGA-AA-A01X 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O       TCGA-AA-A02W 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J       TCGA-AY-4070 
"OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" "OR13C3 WILD-TYPE" 
      TCGA-AY-4071 
"OR13C3 WILD-TYPE" 
D172V2, continuous
D172V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR13C3 MUTATED      2    3
  OR13C3 WILD-TYPE   75   75
        clus
vv       OR13C3 MUTATED OR13C3 WILD-TYPE
  FEMALE              2               75
  MALE                3               75
D172V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR13C3 MUTATED      4    1
  OR13C3 WILD-TYPE  124   23
                               clus
vv                              OR13C3 MUTATED OR13C3 WILD-TYPE
  COLON ADENOCARCINOMA                       4              124
  COLON MUCINOUS ADENOCARCINOMA              1               23
D172V5, multiclass
    clus
vv   OR13C3 MUTATED OR13C3 WILD-TYPE
  T1              0                4
  T2              2               31
  T3              2              101
  T4              1               13
D172V6, multiclass
    clus
vv   OR13C3 MUTATED OR13C3 WILD-TYPE
  N0              5               86
  N1              0               30
  N2              0               34
D172V7, multiclass
     clus
vv    OR13C3 MUTATED OR13C3 WILD-TYPE
  M0               4              126
  M1               0               21
  M1A              0                1
D172V8, multiclass
     clus
vv    OR13C3 MUTATED OR13C3 WILD-TYPE
  I                1               29
  II               3               54
  III              0               44
  IV               0               21

Clustering(173) Variable = KIRREL3 MUTATION ANALYSIS
D173V1, survival
                   sevent
clus2                0  1
  KIRREL3 MUTATED    4  0
  KIRREL3 WILD-TYPE 64 11
  KIRREL3 MUTATED KIRREL3 WILD-TYPE 
                4                75 
  KIRREL3 MUTATED KIRREL3 WILD-TYPE 
                0                11 
$`KIRREL3 MUTATED`
TCGA-A6-3810 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3977 
        8.09         0.99         0.99         1.02 

$`KIRREL3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  KIRREL3 MUTATED KIRREL3 WILD-TYPE 
             0.99              0.92 
  KIRREL3 MUTATED KIRREL3 WILD-TYPE 
             8.09             51.95 
  KIRREL3 MUTATED KIRREL3 WILD-TYPE 
            1.005            13.020 
[1] "1.0 - 8.1 (1.0)"   "0.9 - 52.0 (13.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"KIRREL3 WILD-TYPE"   "KIRREL3 MUTATED" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE"   "KIRREL3 MUTATED"   "KIRREL3 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE"   "KIRREL3 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"KIRREL3 WILD-TYPE"   "KIRREL3 MUTATED" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE"   "KIRREL3 MUTATED"   "KIRREL3 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE"   "KIRREL3 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"KIRREL3 WILD-TYPE"   "KIRREL3 MUTATED" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE"   "KIRREL3 MUTATED"   "KIRREL3 MUTATED" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE"   "KIRREL3 MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" "KIRREL3 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D173V2, continuous
D173V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  KIRREL3 MUTATED      4    5
  KIRREL3 WILD-TYPE   73   73
        clus
vv       KIRREL3 MUTATED KIRREL3 WILD-TYPE
  FEMALE               4                73
  MALE                 5                73
D173V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  KIRREL3 MUTATED      8    0
  KIRREL3 WILD-TYPE  120   24
                               clus
vv                              KIRREL3 MUTATED KIRREL3 WILD-TYPE
  COLON ADENOCARCINOMA                        8               120
  COLON MUCINOUS ADENOCARCINOMA               0                24
D173V5, multiclass
    clus
vv   KIRREL3 MUTATED KIRREL3 WILD-TYPE
  T1               0                 4
  T2               1                32
  T3               7                96
  T4               1                13
D173V6, multiclass
    clus
vv   KIRREL3 MUTATED KIRREL3 WILD-TYPE
  N0               7                84
  N1               0                30
  N2               2                32
D173V7, multiclass
     clus
vv    KIRREL3 MUTATED KIRREL3 WILD-TYPE
  M0                7               123
  M1                1                20
  M1A               0                 1
D173V8, multiclass
     clus
vv    KIRREL3 MUTATED KIRREL3 WILD-TYPE
  I                 0                30
  II                6                51
  III               1                43
  IV                1                20

Clustering(174) Variable = GRIN2A MUTATION ANALYSIS
D174V1, survival
                  sevent
clus2               0  1
  GRIN2A MUTATED    7  2
  GRIN2A WILD-TYPE 61  9
  GRIN2A MUTATED GRIN2A WILD-TYPE 
               9               70 
  GRIN2A MUTATED GRIN2A WILD-TYPE 
               2                9 
$`GRIN2A MUTATED`
TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A00E TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A010 
        0.99         1.02        30.02        17.00         4.01        20.98 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       38.07         1.02        35.01 

$`GRIN2A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00O 
       18.02        19.00        34.03        18.02        18.02        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01S 
        0.99        13.02        12.00        12.00        13.02         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  GRIN2A MUTATED GRIN2A WILD-TYPE 
            0.99             0.92 
  GRIN2A MUTATED GRIN2A WILD-TYPE 
           38.07            51.95 
  GRIN2A MUTATED GRIN2A WILD-TYPE 
           17.00            11.46 
[1] "1.0 - 38.1 (17.0)" "0.9 - 52.0 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE"   "GRIN2A MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
  "GRIN2A MUTATED"   "GRIN2A MUTATED" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" "GRIN2A WILD-TYPE" 
[1] "hr=" "1.6"
D174V2, continuous
D174V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GRIN2A MUTATED      5   10
  GRIN2A WILD-TYPE   72   68
        clus
vv       GRIN2A MUTATED GRIN2A WILD-TYPE
  FEMALE              5               72
  MALE               10               68
D174V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GRIN2A MUTATED     13    2
  GRIN2A WILD-TYPE  115   22
                               clus
vv                              GRIN2A MUTATED GRIN2A WILD-TYPE
  COLON ADENOCARCINOMA                      13              115
  COLON MUCINOUS ADENOCARCINOMA              2               22
D174V5, multiclass
    clus
vv   GRIN2A MUTATED GRIN2A WILD-TYPE
  T1              0                4
  T2              2               31
  T3             10               93
  T4              3               11
D174V6, multiclass
    clus
vv   GRIN2A MUTATED GRIN2A WILD-TYPE
  N0              9               82
  N1              5               25
  N2              1               33
D174V7, multiclass
     clus
vv    GRIN2A MUTATED GRIN2A WILD-TYPE
  M0              12              118
  M1               2               19
  M1A              0                1
D174V8, multiclass
     clus
vv    GRIN2A MUTATED GRIN2A WILD-TYPE
  I                1               29
  II               7               50
  III              4               40
  IV               2               19

Clustering(175) Variable = MDGA2 MUTATION ANALYSIS
D175V1, survival
                 sevent
clus2              0  1
  MDGA2 MUTATED    3  1
  MDGA2 WILD-TYPE 65 10
  MDGA2 MUTATED MDGA2 WILD-TYPE 
              4              75 
  MDGA2 MUTATED MDGA2 WILD-TYPE 
              1              10 
$`MDGA2 MUTATED`
TCGA-AA-3811 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A00N 
        0.99         0.99         1.02         4.01 

$`MDGA2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  MDGA2 MUTATED MDGA2 WILD-TYPE 
           0.99            0.92 
  MDGA2 MUTATED MDGA2 WILD-TYPE 
           4.01           51.95 
  MDGA2 MUTATED MDGA2 WILD-TYPE 
          1.005          13.020 
[1] "1.0 - 4.0 (1.0)"   "0.9 - 52.0 (13.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE"   "MDGA2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"MDGA2 WILD-TYPE"   "MDGA2 MUTATED" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" "MDGA2 WILD-TYPE" 
[1] "hr=" "5.4"
D175V2, continuous
D175V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MDGA2 MUTATED      4    4
  MDGA2 WILD-TYPE   73   74
        clus
vv       MDGA2 MUTATED MDGA2 WILD-TYPE
  FEMALE             4              73
  MALE               4              74
D175V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MDGA2 MUTATED      5    3
  MDGA2 WILD-TYPE  123   21
                               clus
vv                              MDGA2 MUTATED MDGA2 WILD-TYPE
  COLON ADENOCARCINOMA                      5             123
  COLON MUCINOUS ADENOCARCINOMA             3              21
D175V5, multiclass
    clus
vv   MDGA2 MUTATED MDGA2 WILD-TYPE
  T1             0               4
  T2             1              32
  T3             5              98
  T4             2              12
D175V6, multiclass
    clus
vv   MDGA2 MUTATED MDGA2 WILD-TYPE
  N0             5              86
  N1             1              29
  N2             2              32
D175V7, multiclass
     clus
vv    MDGA2 MUTATED MDGA2 WILD-TYPE
  M0              6             124
  M1              1              20
  M1A             0               1
D175V8, multiclass
     clus
vv    MDGA2 MUTATED MDGA2 WILD-TYPE
  I               0              30
  II              4              53
  III             2              42
  IV              1              20

Clustering(176) Variable = ADAM7 MUTATION ANALYSIS
D176V1, survival
                 sevent
clus2              0  1
  ADAM7 MUTATED    5  1
  ADAM7 WILD-TYPE 63 10
  ADAM7 MUTATED ADAM7 WILD-TYPE 
              6              73 
  ADAM7 MUTATED ADAM7 WILD-TYPE 
              1              10 
$`ADAM7 MUTATED`
TCGA-AA-3555 TCGA-AA-3811 TCGA-AA-3877 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01R 
        0.99         0.99         0.99         4.01        20.98        35.01 

$`ADAM7 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  ADAM7 MUTATED ADAM7 WILD-TYPE 
           0.99            0.92 
  ADAM7 MUTATED ADAM7 WILD-TYPE 
          35.01           51.95 
  ADAM7 MUTATED ADAM7 WILD-TYPE 
            2.5            12.0 
[1] "1.0 - 35.0 (2.5)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE"   "ADAM7 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE"   "ADAM7 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ADAM7 WILD-TYPE"   "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ADAM7 WILD-TYPE"   "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE"   "ADAM7 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE"   "ADAM7 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ADAM7 WILD-TYPE"   "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ADAM7 WILD-TYPE"   "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE"   "ADAM7 MUTATED" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE"   "ADAM7 MUTATED" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ADAM7 WILD-TYPE"   "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ADAM7 WILD-TYPE"   "ADAM7 MUTATED" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" "ADAM7 WILD-TYPE" 
[1] "hr=" "1.8"
D176V2, continuous
D176V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ADAM7 MUTATED      6    3
  ADAM7 WILD-TYPE   71   75
        clus
vv       ADAM7 MUTATED ADAM7 WILD-TYPE
  FEMALE             6              71
  MALE               3              75
D176V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ADAM7 MUTATED      5    4
  ADAM7 WILD-TYPE  123   20
                               clus
vv                              ADAM7 MUTATED ADAM7 WILD-TYPE
  COLON ADENOCARCINOMA                      5             123
  COLON MUCINOUS ADENOCARCINOMA             4              20
D176V5, multiclass
    clus
vv   ADAM7 MUTATED ADAM7 WILD-TYPE
  T1             1               3
  T2             0              33
  T3             5              98
  T4             3              11
D176V6, multiclass
    clus
vv   ADAM7 MUTATED ADAM7 WILD-TYPE
  N0             6              85
  N1             1              29
  N2             2              32
D176V7, multiclass
     clus
vv    ADAM7 MUTATED ADAM7 WILD-TYPE
  M0              8             122
  M1              1              20
  M1A             0               1
D176V8, multiclass
     clus
vv    ADAM7 MUTATED ADAM7 WILD-TYPE
  I               1              29
  II              5              52
  III             2              42
  IV              1              20

Clustering(177) Variable = OR52N1 MUTATION ANALYSIS
D177V1, survival
                  sevent
clus2               0  1
  OR52N1 MUTATED    3  2
  OR52N1 WILD-TYPE 65  9
  OR52N1 MUTATED OR52N1 WILD-TYPE 
               5               74 
  OR52N1 MUTATED OR52N1 WILD-TYPE 
               2                9 
$`OR52N1 MUTATED`
TCGA-A6-2676 TCGA-AA-3666 TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A010 
       14.70         1.02         1.02         4.01        20.98 

$`OR52N1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  OR52N1 MUTATED OR52N1 WILD-TYPE 
            1.02             0.92 
  OR52N1 MUTATED OR52N1 WILD-TYPE 
           20.98            51.95 
  OR52N1 MUTATED OR52N1 WILD-TYPE 
            4.01            12.00 
[1] "1.0 - 21.0 (4.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE"   "OR52N1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE"   "OR52N1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE"   "OR52N1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"OR52N1 WILD-TYPE"   "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "OR52N1 MUTATED" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" "OR52N1 WILD-TYPE" 
[1] "hr=" "4.5"
D177V2, continuous
D177V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52N1 MUTATED      3    3
  OR52N1 WILD-TYPE   74   75
        clus
vv       OR52N1 MUTATED OR52N1 WILD-TYPE
  FEMALE              3               74
  MALE                3               75
D177V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52N1 MUTATED      2    4
  OR52N1 WILD-TYPE  126   20
                               clus
vv                              OR52N1 MUTATED OR52N1 WILD-TYPE
  COLON ADENOCARCINOMA                       2              126
  COLON MUCINOUS ADENOCARCINOMA              4               20
D177V5, multiclass
    clus
vv   OR52N1 MUTATED OR52N1 WILD-TYPE
  T1              0                4
  T2              0               33
  T3              3              100
  T4              2               12
D177V6, multiclass
    clus
vv   OR52N1 MUTATED OR52N1 WILD-TYPE
  N0              5               86
  N1              1               29
  N2              0               34
D177V7, multiclass
     clus
vv    OR52N1 MUTATED OR52N1 WILD-TYPE
  M0               6              124
  M1               0               21
  M1A              0                1
D177V8, multiclass
     clus
vv    OR52N1 MUTATED OR52N1 WILD-TYPE
  I                0               30
  II               5               52
  III              1               43
  IV               0               21

Clustering(178) Variable = GPC6 MUTATION ANALYSIS
D178V1, survival
                sevent
clus2             0  1
  GPC6 MUTATED    5  0
  GPC6 WILD-TYPE 63 11
  GPC6 MUTATED GPC6 WILD-TYPE 
             5             74 
  GPC6 MUTATED GPC6 WILD-TYPE 
             0             11 
$`GPC6 MUTATED`
TCGA-A6-3810 TCGA-AA-3877 TCGA-AA-A00J TCGA-AA-A00U TCGA-AA-A01Q 
        8.09         0.99        18.02        17.00         1.02 

$`GPC6 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        0.99         1.02         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L 
       18.02        19.00        30.02        34.03        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00W TCGA-AA-A00Z 
        4.01        27.02        27.02         0.99        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       13.02        38.07        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  GPC6 MUTATED GPC6 WILD-TYPE 
          0.99           0.92 
  GPC6 MUTATED GPC6 WILD-TYPE 
         18.02          51.95 
  GPC6 MUTATED GPC6 WILD-TYPE 
          8.09          12.00 
[1] "1.0 - 18.0 (8.1)"  "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"GPC6 WILD-TYPE"   "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "GPC6 MUTATED" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"GPC6 WILD-TYPE" "GPC6 WILD-TYPE" "GPC6 WILD-TYPE" 
[1] "hr="     "7.3e+07"
D178V2, continuous
D178V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPC6 MUTATED      4    3
  GPC6 WILD-TYPE   73   75
        clus
vv       GPC6 MUTATED GPC6 WILD-TYPE
  FEMALE            4             73
  MALE              3             75
D178V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPC6 MUTATED      4    3
  GPC6 WILD-TYPE  124   21
                               clus
vv                              GPC6 MUTATED GPC6 WILD-TYPE
  COLON ADENOCARCINOMA                     4            124
  COLON MUCINOUS ADENOCARCINOMA            3             21
D178V5, multiclass
    clus
vv   GPC6 MUTATED GPC6 WILD-TYPE
  T1            1              3
  T2            0             33
  T3            4             99
  T4            2             12
D178V6, multiclass
    clus
vv   GPC6 MUTATED GPC6 WILD-TYPE
  N0            4             87
  N1            2             28
  N2            1             33
D178V7, multiclass
     clus
vv    GPC6 MUTATED GPC6 WILD-TYPE
  M0             6            124
  M1             1             20
  M1A            0              1
D178V8, multiclass
     clus
vv    GPC6 MUTATED GPC6 WILD-TYPE
  I              1             29
  II             3             54
  III            2             42
  IV             1             20

Clustering(179) Variable = CDON MUTATION ANALYSIS
D179V1, survival
                sevent
clus2             0  1
  CDON MUTATED    3  1
  CDON WILD-TYPE 65 10
  CDON MUTATED CDON WILD-TYPE 
             4             75 
  CDON MUTATED CDON WILD-TYPE 
             1             10 
$`CDON MUTATED`
TCGA-AA-3966 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01Q 
        1.02         4.01        20.98         1.02 

$`CDON WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02        38.07        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  CDON MUTATED CDON WILD-TYPE 
          1.02           0.92 
  CDON MUTATED CDON WILD-TYPE 
         20.98          51.95 
  CDON MUTATED CDON WILD-TYPE 
         2.515         12.000 
[1] "1.0 - 21.0 (2.5)"  "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDON WILD-TYPE"   "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDON WILD-TYPE"   "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDON WILD-TYPE"   "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDON WILD-TYPE"   "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"CDON WILD-TYPE"   "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"CDON WILD-TYPE"   "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "CDON MUTATED" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"CDON WILD-TYPE" "CDON WILD-TYPE" "CDON WILD-TYPE" 
[1] "hr=" "2.5"
D179V2, continuous
D179V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDON MUTATED      9    4
  CDON WILD-TYPE   68   74
        clus
vv       CDON MUTATED CDON WILD-TYPE
  FEMALE            9             68
  MALE              4             74
D179V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CDON MUTATED      9    3
  CDON WILD-TYPE  119   21
                               clus
vv                              CDON MUTATED CDON WILD-TYPE
  COLON ADENOCARCINOMA                     9            119
  COLON MUCINOUS ADENOCARCINOMA            3             21
D179V5, multiclass
    clus
vv   CDON MUTATED CDON WILD-TYPE
  T1            0              4
  T2            2             31
  T3            8             95
  T4            3             11
D179V6, multiclass
    clus
vv   CDON MUTATED CDON WILD-TYPE
  N0           11             80
  N1            2             28
  N2            0             34
D179V7, multiclass
     clus
vv    CDON MUTATED CDON WILD-TYPE
  M0            13            117
  M1             0             21
  M1A            0              1
D179V8, multiclass
     clus
vv    CDON MUTATED CDON WILD-TYPE
  I              1             29
  II            10             47
  III            2             42
  IV             0             21

Clustering(180) Variable = CHST10 MUTATION ANALYSIS
D180V1, survival
                  sevent
clus2               0  1
  CHST10 MUTATED    4  1
  CHST10 WILD-TYPE 64 10
  CHST10 MUTATED CHST10 WILD-TYPE 
               5               74 
  CHST10 MUTATED CHST10 WILD-TYPE 
               1               10 
$`CHST10 MUTATED`
TCGA-AA-3518 TCGA-AA-3715 TCGA-AA-3977 TCGA-AA-A01P TCGA-AA-A01T 
        1.02         0.99         1.02        38.07        33.04 

$`CHST10 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01V 
       12.00        13.02         1.02        35.01         1.02        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  CHST10 MUTATED CHST10 WILD-TYPE 
            0.99             0.92 
  CHST10 MUTATED CHST10 WILD-TYPE 
           38.07            51.95 
  CHST10 MUTATED CHST10 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 38.1 (1.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" "CHST10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" "CHST10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" "CHST10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" "CHST10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" "CHST10 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" "CHST10 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE"   "CHST10 MUTATED" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"CHST10 WILD-TYPE" "CHST10 WILD-TYPE" "CHST10 WILD-TYPE" 
[1] "hr=" "1.5"
D180V2, continuous
D180V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CHST10 MUTATED      5    2
  CHST10 WILD-TYPE   72   76
        clus
vv       CHST10 MUTATED CHST10 WILD-TYPE
  FEMALE              5               72
  MALE                2               76
D180V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CHST10 MUTATED      6    1
  CHST10 WILD-TYPE  122   23
                               clus
vv                              CHST10 MUTATED CHST10 WILD-TYPE
  COLON ADENOCARCINOMA                       6              122
  COLON MUCINOUS ADENOCARCINOMA              1               23
D180V5, multiclass
    clus
vv   CHST10 MUTATED CHST10 WILD-TYPE
  T1              0                4
  T2              2               31
  T3              5               98
  T4              0               14
D180V6, multiclass
    clus
vv   CHST10 MUTATED CHST10 WILD-TYPE
  N0              5               86
  N1              2               28
  N2              0               34
D180V7, multiclass
     clus
vv    CHST10 MUTATED CHST10 WILD-TYPE
  M0               6              124
  M1               0               21
  M1A              0                1
D180V8, multiclass
     clus
vv    CHST10 MUTATED CHST10 WILD-TYPE
  I                1               29
  II               3               54
  III              2               42
  IV               0               21

Clustering(181) Variable = UNC13C MUTATION ANALYSIS
D181V1, survival
                  sevent
clus2               0  1
  UNC13C MUTATED    5  1
  UNC13C WILD-TYPE 63 10
  UNC13C MUTATED UNC13C WILD-TYPE 
               6               73 
  UNC13C MUTATED UNC13C WILD-TYPE 
               1               10 
$`UNC13C MUTATED`
TCGA-A6-3810 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3947 TCGA-AA-A00N TCGA-AA-A010 
        8.09         0.99         1.02         0.99         4.01        20.98 

$`UNC13C WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
        1.02        35.01         1.02        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  UNC13C MUTATED UNC13C WILD-TYPE 
            0.99             0.92 
  UNC13C MUTATED UNC13C WILD-TYPE 
           20.98            51.95 
  UNC13C MUTATED UNC13C WILD-TYPE 
           2.515           13.020 
[1] "1.0 - 21.0 (2.5)"  "0.9 - 52.0 (13.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"UNC13C WILD-TYPE"   "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "UNC13C MUTATED" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"UNC13C WILD-TYPE" "UNC13C WILD-TYPE" "UNC13C WILD-TYPE" 
[1] "hr=" "1.9"
D181V2, continuous
D181V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UNC13C MUTATED      9    3
  UNC13C WILD-TYPE   68   75
        clus
vv       UNC13C MUTATED UNC13C WILD-TYPE
  FEMALE              9               68
  MALE                3               75
D181V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UNC13C MUTATED      8    3
  UNC13C WILD-TYPE  120   21
                               clus
vv                              UNC13C MUTATED UNC13C WILD-TYPE
  COLON ADENOCARCINOMA                       8              120
  COLON MUCINOUS ADENOCARCINOMA              3               21
D181V5, multiclass
    clus
vv   UNC13C MUTATED UNC13C WILD-TYPE
  T1              1                3
  T2              1               32
  T3              7               96
  T4              3               11
D181V6, multiclass
    clus
vv   UNC13C MUTATED UNC13C WILD-TYPE
  N0             10               81
  N1              1               29
  N2              1               33
D181V7, multiclass
     clus
vv    UNC13C MUTATED UNC13C WILD-TYPE
  M0              11              119
  M1               1               20
  M1A              0                1
D181V8, multiclass
     clus
vv    UNC13C MUTATED UNC13C WILD-TYPE
  I                2               28
  II               8               49
  III              1               43
  IV               1               20

Clustering(182) Variable = C22ORF23 MUTATION ANALYSIS
D182V1, survival
                    sevent
clus2                 0  1
  C22ORF23 MUTATED    3  0
  C22ORF23 WILD-TYPE 65 11
  C22ORF23 MUTATED C22ORF23 WILD-TYPE 
                 3                 76 
  C22ORF23 MUTATED C22ORF23 WILD-TYPE 
                 0                 11 
$`C22ORF23 MUTATED`
TCGA-AA-3685 TCGA-AA-3947 TCGA-AA-A010 
        0.99         0.99        20.98 

$`C22ORF23 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  C22ORF23 MUTATED C22ORF23 WILD-TYPE 
              0.99               0.92 
  C22ORF23 MUTATED C22ORF23 WILD-TYPE 
             20.98              51.95 
  C22ORF23 MUTATED C22ORF23 WILD-TYPE 
              0.99              12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (12.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C22ORF23 WILD-TYPE"   "C22ORF23 MUTATED" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "C22ORF23 MUTATED" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C22ORF23 WILD-TYPE"   "C22ORF23 MUTATED" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AY-4071 
"C22ORF23 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C22ORF23 WILD-TYPE"   "C22ORF23 MUTATED" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "C22ORF23 MUTATED" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C22ORF23 WILD-TYPE"   "C22ORF23 MUTATED" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AY-4071 
"C22ORF23 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"C22ORF23 WILD-TYPE"   "C22ORF23 MUTATED" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
  "C22ORF23 MUTATED" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"C22ORF23 WILD-TYPE"   "C22ORF23 MUTATED" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" "C22ORF23 WILD-TYPE" 
        TCGA-AY-4071 
"C22ORF23 WILD-TYPE" 
[1] "hr="     "2.5e+07"
D182V2, continuous
D182V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C22ORF23 MUTATED      3    2
  C22ORF23 WILD-TYPE   74   76
        clus
vv       C22ORF23 MUTATED C22ORF23 WILD-TYPE
  FEMALE                3                 74
  MALE                  2                 76
D182V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C22ORF23 MUTATED      3    2
  C22ORF23 WILD-TYPE  125   22
                               clus
vv                              C22ORF23 MUTATED C22ORF23 WILD-TYPE
  COLON ADENOCARCINOMA                         3                125
  COLON MUCINOUS ADENOCARCINOMA                2                 22
D182V5, multiclass
    clus
vv   C22ORF23 MUTATED C22ORF23 WILD-TYPE
  T1                0                  4
  T2                1                 32
  T3                2                101
  T4                2                 12
D182V6, multiclass
    clus
vv   C22ORF23 MUTATED C22ORF23 WILD-TYPE
  N0                4                 87
  N1                1                 29
  N2                0                 34
D182V7, multiclass
     clus
vv    C22ORF23 MUTATED C22ORF23 WILD-TYPE
  M0                 5                125
  M1                 0                 21
  M1A                0                  1
D182V8, multiclass
     clus
vv    C22ORF23 MUTATED C22ORF23 WILD-TYPE
  I                  1                 29
  II                 3                 54
  III                1                 43
  IV                 0                 21

Clustering(183) Variable = ADCY2 MUTATION ANALYSIS
D183V1, survival
                 sevent
clus2              0  1
  ADCY2 MUTATED    8  0
  ADCY2 WILD-TYPE 60 11
  ADCY2 MUTATED ADCY2 WILD-TYPE 
              8              71 
  ADCY2 MUTATED ADCY2 WILD-TYPE 
              0              11 
$`ADCY2 MUTATED`
TCGA-A6-2674 TCGA-A6-2683 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3949 TCGA-AA-3977 
       17.19        15.52         0.99         0.99         0.99         1.02 
TCGA-AA-A00J TCGA-AA-A010 
       18.02        20.98 

$`ADCY2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-3807 
       13.91        16.54        14.70        17.79        14.37        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3562 TCGA-AA-3666 
        9.14         8.09         1.02         0.99         1.02         1.02 
TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 
        1.02         0.92         0.99         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  ADCY2 MUTATED ADCY2 WILD-TYPE 
           0.99            0.92 
  ADCY2 MUTATED ADCY2 WILD-TYPE 
          20.98           51.95 
  ADCY2 MUTATED ADCY2 WILD-TYPE 
           8.27           12.00 
[1] "1.0 - 21.0 (8.3)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE"   "ADCY2 MUTATED" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "ADCY2 MUTATED" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" "ADCY2 WILD-TYPE" 
[1] "hr="     "7.7e+07"
D183V2, continuous
D183V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ADCY2 MUTATED      7    4
  ADCY2 WILD-TYPE   70   74
        clus
vv       ADCY2 MUTATED ADCY2 WILD-TYPE
  FEMALE             7              70
  MALE               4              74
D183V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ADCY2 MUTATED      6    4
  ADCY2 WILD-TYPE  122   20
                               clus
vv                              ADCY2 MUTATED ADCY2 WILD-TYPE
  COLON ADENOCARCINOMA                      6             122
  COLON MUCINOUS ADENOCARCINOMA             4              20
D183V5, multiclass
    clus
vv   ADCY2 MUTATED ADCY2 WILD-TYPE
  T1             0               4
  T2             2              31
  T3             5              98
  T4             4              10
D183V6, multiclass
    clus
vv   ADCY2 MUTATED ADCY2 WILD-TYPE
  N0             8              83
  N1             2              28
  N2             1              33
D183V7, multiclass
     clus
vv    ADCY2 MUTATED ADCY2 WILD-TYPE
  M0              8             122
  M1              2              19
  M1A             0               1
D183V8, multiclass
     clus
vv    ADCY2 MUTATED ADCY2 WILD-TYPE
  I               1              29
  II              5              52
  III             2              42
  IV              1              20

Clustering(184) Variable = RHOA MUTATION ANALYSIS
D184V1, survival
                sevent
clus2             0  1
  RHOA MUTATED    1  1
  RHOA WILD-TYPE 67 10
  RHOA MUTATED RHOA WILD-TYPE 
             2             77 
  RHOA MUTATED RHOA WILD-TYPE 
             1             10 
$`RHOA MUTATED`
TCGA-AA-A01P TCGA-AA-A01R 
       38.07        35.01 

$`RHOA WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q 
        0.99        13.02        12.00        12.00        13.02         1.02 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  RHOA MUTATED RHOA WILD-TYPE 
         35.01           0.92 
  RHOA MUTATED RHOA WILD-TYPE 
         38.07          51.95 
  RHOA MUTATED RHOA WILD-TYPE 
         36.54          10.92 
[1] "35.0 - 38.1 (36.5)" "0.9 - 52.0 (10.9)" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE"   "RHOA MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RHOA WILD-TYPE"   "RHOA MUTATED" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
[1] "Remove cluster labels:" "RHOA MUTATED"          
clus
  RHOA MUTATED RHOA WILD-TYPE 
             2             77 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01Q 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A01Z     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AY-4070 
"RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" "RHOA WILD-TYPE" 
    TCGA-AY-4071 
"RHOA WILD-TYPE" 
D184V2, continuous
D184V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHOA MUTATED      2    2
  RHOA WILD-TYPE   75   76
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  FEMALE            2             75
  MALE              2             76
D184V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RHOA MUTATED      2    1
  RHOA WILD-TYPE  126   23
                               clus
vv                              RHOA MUTATED RHOA WILD-TYPE
  COLON ADENOCARCINOMA                     2            126
  COLON MUCINOUS ADENOCARCINOMA            1             23
D184V5, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  T1            0              4
  T2            0             33
  T3            4             99
  T4            0             14
D184V6, multiclass
    clus
vv   RHOA MUTATED RHOA WILD-TYPE
  N0            1             90
  N1            2             28
  N2            1             33
D184V7, multiclass
     clus
vv    RHOA MUTATED RHOA WILD-TYPE
  M0             3            127
  M1             1             20
  M1A            0              1
D184V8, multiclass
     clus
vv    RHOA MUTATED RHOA WILD-TYPE
  I              0             30
  II             1             56
  III            2             42
  IV             1             20

Clustering(185) Variable = SLCO1B3 MUTATION ANALYSIS
D185V1, survival
                   sevent
clus2                0  1
  SLCO1B3 MUTATED    5  1
  SLCO1B3 WILD-TYPE 63 10
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
                6                73 
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
                1                10 
$`SLCO1B3 MUTATED`
TCGA-AA-3844 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01S 
        0.92         1.02         0.99         4.01        20.98         1.02 

$`SLCO1B3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3846 
        0.99         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         1.02         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X 
       38.07         1.02        35.01        33.04        35.01        26.01 
TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J 
       20.98        39.06        51.95        39.95         2.01         5.03 
TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        0.92        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
             0.92              0.92 
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
            20.98             51.95 
  SLCO1B3 MUTATED SLCO1B3 WILD-TYPE 
             1.02             13.02 
[1] "0.9 - 21.0 (1.0)"  "0.9 - 52.0 (13.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE"   "SLCO1B3 MUTATED" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" "SLCO1B3 WILD-TYPE" 
[1] "hr=" "2.4"
D185V2, continuous
D185V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO1B3 MUTATED      5    2
  SLCO1B3 WILD-TYPE   72   76
        clus
vv       SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  FEMALE               5                72
  MALE                 2                76
D185V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO1B3 MUTATED      5    2
  SLCO1B3 WILD-TYPE  123   22
                               clus
vv                              SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  COLON ADENOCARCINOMA                        5               123
  COLON MUCINOUS ADENOCARCINOMA               2                22
D185V5, multiclass
    clus
vv   SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  T1               0                 4
  T2               1                32
  T3               4                99
  T4               2                12
D185V6, multiclass
    clus
vv   SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  N0               5                86
  N1               1                29
  N2               1                33
D185V7, multiclass
     clus
vv    SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  M0                7               123
  M1                0                21
  M1A               0                 1
D185V8, multiclass
     clus
vv    SLCO1B3 MUTATED SLCO1B3 WILD-TYPE
  I                 1                29
  II                4                53
  III               2                42
  IV                0                21

Clustering(186) Variable = BAI3 MUTATION ANALYSIS
D186V1, survival
                sevent
clus2             0  1
  BAI3 MUTATED    6  1
  BAI3 WILD-TYPE 62 10
  BAI3 MUTATED BAI3 WILD-TYPE 
             7             72 
  BAI3 MUTATED BAI3 WILD-TYPE 
             1             10 
$`BAI3 MUTATED`
TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3679 TCGA-AA-3947 TCGA-AA-A00N TCGA-AA-A010 
        0.99         0.99         0.99         0.99         4.01        20.98 
TCGA-AA-A01G 
       12.00 

$`BAI3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         1.02         1.02 
TCGA-AA-3666 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 
        1.02         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O 
       30.02        34.03        18.02        18.02        17.00        27.02 
TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 
       27.02         0.99        17.00        14.99        21.99        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
        0.99        13.02        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  BAI3 MUTATED BAI3 WILD-TYPE 
          0.99           0.92 
  BAI3 MUTATED BAI3 WILD-TYPE 
         20.98          51.95 
  BAI3 MUTATED BAI3 WILD-TYPE 
          0.99          13.02 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (13.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"BAI3 WILD-TYPE"   "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
  "BAI3 MUTATED" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"BAI3 WILD-TYPE" "BAI3 WILD-TYPE" "BAI3 WILD-TYPE" 
[1] "hr=" "2"  
D186V2, continuous
D186V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BAI3 MUTATED      6    6
  BAI3 WILD-TYPE   71   72
        clus
vv       BAI3 MUTATED BAI3 WILD-TYPE
  FEMALE            6             71
  MALE              6             72
D186V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BAI3 MUTATED      7    5
  BAI3 WILD-TYPE  121   19
                               clus
vv                              BAI3 MUTATED BAI3 WILD-TYPE
  COLON ADENOCARCINOMA                     7            121
  COLON MUCINOUS ADENOCARCINOMA            5             19
D186V5, multiclass
    clus
vv   BAI3 MUTATED BAI3 WILD-TYPE
  T1            0              4
  T2            2             31
  T3            6             97
  T4            4             10
D186V6, multiclass
    clus
vv   BAI3 MUTATED BAI3 WILD-TYPE
  N0           10             81
  N1            0             30
  N2            2             32
D186V7, multiclass
     clus
vv    BAI3 MUTATED BAI3 WILD-TYPE
  M0            10            120
  M1             2             19
  M1A            0              1
D186V8, multiclass
     clus
vv    BAI3 MUTATED BAI3 WILD-TYPE
  I              2             28
  II             8             49
  III            0             44
  IV             2             19

Clustering(187) Variable = LRP2 MUTATION ANALYSIS
D187V1, survival
                sevent
clus2             0  1
  LRP2 MUTATED   16  2
  LRP2 WILD-TYPE 52  9
  LRP2 MUTATED LRP2 WILD-TYPE 
            18             61 
  LRP2 MUTATED LRP2 WILD-TYPE 
             2              9 
$`LRP2 MUTATED`
TCGA-AA-3518 TCGA-AA-3555 TCGA-AA-3715 TCGA-AA-3877 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         0.99         0.99         0.99 
TCGA-AA-3977 TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O 
        1.02        34.03        18.02        17.00         4.01        27.02 
TCGA-AA-A010 TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01T TCGA-AA-A02O 
       20.98        38.07         1.02        35.01        33.04         0.92 

$`LRP2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3562 
       15.52        10.92         9.14         8.09         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3818 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         1.02         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00K TCGA-AA-A00Q 
       13.94        18.02        19.00        30.02        18.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01S TCGA-AA-A01V 
       13.02        12.00        12.00        13.02         1.02        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 
        5.03        40.96        39.95        18.02        40.93        16.31 
TCGA-AY-4071 
        0.95 

  LRP2 MUTATED LRP2 WILD-TYPE 
          0.92           0.92 
  LRP2 MUTATED LRP2 WILD-TYPE 
         38.07          51.95 
  LRP2 MUTATED LRP2 WILD-TYPE 
         2.515         12.000 
[1] "0.9 - 38.1 (2.5)"  "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "LRP2 MUTATED"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "LRP2 MUTATED"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"LRP2 WILD-TYPE"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
  "LRP2 MUTATED"   "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
  "LRP2 MUTATED"   "LRP2 MUTATED" "LRP2 WILD-TYPE"   "LRP2 MUTATED" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "LRP2 MUTATED" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"LRP2 WILD-TYPE" "LRP2 WILD-TYPE" "LRP2 WILD-TYPE" 
[1] "hr=" "1.1"
D187V2, continuous
D187V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LRP2 MUTATED     16   12
  LRP2 WILD-TYPE   61   66
        clus
vv       LRP2 MUTATED LRP2 WILD-TYPE
  FEMALE           16             61
  MALE             12             66
D187V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LRP2 MUTATED     19    8
  LRP2 WILD-TYPE  109   16
                               clus
vv                              LRP2 MUTATED LRP2 WILD-TYPE
  COLON ADENOCARCINOMA                    19            109
  COLON MUCINOUS ADENOCARCINOMA            8             16
D187V5, multiclass
    clus
vv   LRP2 MUTATED LRP2 WILD-TYPE
  T1            1              3
  T2            3             30
  T3           19             84
  T4            5              9
D187V6, multiclass
    clus
vv   LRP2 MUTATED LRP2 WILD-TYPE
  N0           17             74
  N1            6             24
  N2            5             29
D187V7, multiclass
     clus
vv    LRP2 MUTATED LRP2 WILD-TYPE
  M0            26            104
  M1             1             20
  M1A            0              1
D187V8, multiclass
     clus
vv    LRP2 MUTATED LRP2 WILD-TYPE
  I              3             27
  II            13             44
  III           10             34
  IV             1             20

Clustering(188) Variable = LUZP2 MUTATION ANALYSIS
D188V1, survival
                 sevent
clus2              0  1
  LUZP2 MUTATED    0  1
  LUZP2 WILD-TYPE 68 10
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              1              78 
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              1              10 
$`LUZP2 MUTATED`
TCGA-AA-A00N 
        4.01 

$`LUZP2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  LUZP2 MUTATED LUZP2 WILD-TYPE 
           4.01            0.92 
  LUZP2 MUTATED LUZP2 WILD-TYPE 
           4.01           51.95 
  LUZP2 MUTATED LUZP2 WILD-TYPE 
           4.01           12.00 
[1] "4.0 - 4.0 (4.0)"   "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"LUZP2 WILD-TYPE"   "LUZP2 MUTATED" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
[1] "Remove cluster labels:" "LUZP2 MUTATED"         
clus
  LUZP2 MUTATED LUZP2 WILD-TYPE 
              1              78 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00O      TCGA-AA-A00Q      TCGA-AA-A00R 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z      TCGA-AA-A010 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F      TCGA-AA-A01G 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P      TCGA-AA-A01Q 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T      TCGA-AA-A01V 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024      TCGA-AA-A029 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J      TCGA-AA-A02O 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F      TCGA-AA-A03J 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
     TCGA-AY-4070      TCGA-AY-4071 
"LUZP2 WILD-TYPE" "LUZP2 WILD-TYPE" 
D188V2, continuous
D188V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LUZP2 MUTATED      0    4
  LUZP2 WILD-TYPE   77   74
        clus
vv       LUZP2 MUTATED LUZP2 WILD-TYPE
  FEMALE             0              77
  MALE               4              74
D188V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LUZP2 MUTATED      3    1
  LUZP2 WILD-TYPE  125   23
                               clus
vv                              LUZP2 MUTATED LUZP2 WILD-TYPE
  COLON ADENOCARCINOMA                      3             125
  COLON MUCINOUS ADENOCARCINOMA             1              23
D188V5, multiclass
    clus
vv   LUZP2 MUTATED LUZP2 WILD-TYPE
  T1             0               4
  T2             0              33
  T3             3             100
  T4             1              13
D188V6, multiclass
    clus
vv   LUZP2 MUTATED LUZP2 WILD-TYPE
  N0             2              89
  N1             2              28
  N2             0              34
D188V7, multiclass
     clus
vv    LUZP2 MUTATED LUZP2 WILD-TYPE
  M0              4             126
  M1              0              21
  M1A             0               1
D188V8, multiclass
     clus
vv    LUZP2 MUTATED LUZP2 WILD-TYPE
  I               0              30
  II              2              55
  III             2              42
  IV              0              21

Clustering(189) Variable = MAP2 MUTATION ANALYSIS
D189V1, survival
                sevent
clus2             0  1
  MAP2 MUTATED    7  2
  MAP2 WILD-TYPE 61  9
  MAP2 MUTATED MAP2 WILD-TYPE 
             9             70 
  MAP2 MUTATED MAP2 WILD-TYPE 
             2              9 
$`MAP2 MUTATED`
TCGA-A6-2672 TCGA-AA-3518 TCGA-AA-3818 TCGA-AA-3949 TCGA-AA-3966 TCGA-AA-A00J 
       16.54         1.02         0.99         0.99         1.02        18.02 
TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A01Z 
        4.01        20.98        20.98 

$`MAP2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
       10.92         9.14         8.09         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3975 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         0.99        13.94        18.02        19.00        30.02 
TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       34.03        18.02        17.00        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A024 TCGA-AA-A029 
        1.02        33.04        35.01        26.01        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  MAP2 MUTATED MAP2 WILD-TYPE 
          0.99           0.92 
  MAP2 MUTATED MAP2 WILD-TYPE 
         20.98          51.95 
  MAP2 MUTATED MAP2 WILD-TYPE 
          4.01          12.00 
[1] "1.0 - 21.0 (4.0)"  "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
  "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "MAP2 MUTATED" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE"   "MAP2 MUTATED" "MAP2 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"MAP2 WILD-TYPE" "MAP2 WILD-TYPE" "MAP2 WILD-TYPE" 
[1] "hr=" "2.2"
D189V2, continuous
D189V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MAP2 MUTATED      9    5
  MAP2 WILD-TYPE   68   73
        clus
vv       MAP2 MUTATED MAP2 WILD-TYPE
  FEMALE            9             68
  MALE              5             73
D189V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MAP2 MUTATED      9    5
  MAP2 WILD-TYPE  119   19
                               clus
vv                              MAP2 MUTATED MAP2 WILD-TYPE
  COLON ADENOCARCINOMA                     9            119
  COLON MUCINOUS ADENOCARCINOMA            5             19
D189V5, multiclass
    clus
vv   MAP2 MUTATED MAP2 WILD-TYPE
  T1            0              4
  T2            1             32
  T3           10             93
  T4            3             11
D189V6, multiclass
    clus
vv   MAP2 MUTATED MAP2 WILD-TYPE
  N0           10             81
  N1            4             26
  N2            0             34
D189V7, multiclass
     clus
vv    MAP2 MUTATED MAP2 WILD-TYPE
  M0            14            116
  M1             0             21
  M1A            0              1
D189V8, multiclass
     clus
vv    MAP2 MUTATED MAP2 WILD-TYPE
  I              1             29
  II             9             48
  III            4             40
  IV             0             21

Clustering(190) Variable = PRDM2 MUTATION ANALYSIS
D190V1, survival
                 sevent
clus2              0  1
  PRDM2 MUTATED    7  0
  PRDM2 WILD-TYPE 61 11
  PRDM2 MUTATED PRDM2 WILD-TYPE 
              7              72 
  PRDM2 MUTATED PRDM2 WILD-TYPE 
              0              11 
$`PRDM2 MUTATED`
TCGA-A6-2672 TCGA-A6-2678 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-A00J TCGA-AA-A00K 
       16.54        14.37         0.99         1.02        18.02        18.02 
TCGA-AA-A01R 
       35.01 

$`PRDM2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2683 TCGA-A6-3807 
       13.91        17.19        14.70        17.79        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        0.99         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       30.02        34.03        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
        0.99        17.00        14.99        21.99        20.98        15.02 
TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P 
        0.99        13.02        12.00        12.00        13.02        38.07 
TCGA-AA-A01Q TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
        1.02         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  PRDM2 MUTATED PRDM2 WILD-TYPE 
           0.99            0.92 
  PRDM2 MUTATED PRDM2 WILD-TYPE 
          35.01           51.95 
  PRDM2 MUTATED PRDM2 WILD-TYPE 
          16.54           10.03 
[1] "1.0 - 35.0 (16.5)" "0.9 - 52.0 (10.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE"   "PRDM2 MUTATED"   "PRDM2 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE"   "PRDM2 MUTATED"   "PRDM2 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE"   "PRDM2 MUTATED"   "PRDM2 MUTATED" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"PRDM2 WILD-TYPE"   "PRDM2 MUTATED" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" "PRDM2 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D190V2, continuous
D190V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRDM2 MUTATED      9    4
  PRDM2 WILD-TYPE   68   74
        clus
vv       PRDM2 MUTATED PRDM2 WILD-TYPE
  FEMALE             9              68
  MALE               4              74
D190V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRDM2 MUTATED      8    4
  PRDM2 WILD-TYPE  120   20
                               clus
vv                              PRDM2 MUTATED PRDM2 WILD-TYPE
  COLON ADENOCARCINOMA                      8             120
  COLON MUCINOUS ADENOCARCINOMA             4              20
D190V5, multiclass
    clus
vv   PRDM2 MUTATED PRDM2 WILD-TYPE
  T1             0               4
  T2             1              32
  T3            10              93
  T4             2              12
D190V6, multiclass
    clus
vv   PRDM2 MUTATED PRDM2 WILD-TYPE
  N0             7              84
  N1             4              26
  N2             2              32
D190V7, multiclass
     clus
vv    PRDM2 MUTATED PRDM2 WILD-TYPE
  M0             12             118
  M1              1              20
  M1A             0               1
D190V8, multiclass
     clus
vv    PRDM2 MUTATED PRDM2 WILD-TYPE
  I               1              29
  II              6              51
  III             5              39
  IV              1              20

Clustering(191) Variable = HTR2C MUTATION ANALYSIS
D191V1, survival
                 sevent
clus2              0  1
  HTR2C MUTATED    4  1
  HTR2C WILD-TYPE 64 10
  HTR2C MUTATED HTR2C WILD-TYPE 
              5              74 
  HTR2C MUTATED HTR2C WILD-TYPE 
              1              10 
$`HTR2C MUTATED`
TCGA-AA-3666 TCGA-AA-3837 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A02Y 
        1.02         1.02         1.02         0.99        39.95 

$`HTR2C WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         0.99         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         1.02         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       20.98        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03         0.92        40.96        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  HTR2C MUTATED HTR2C WILD-TYPE 
           0.99            0.92 
  HTR2C MUTATED HTR2C WILD-TYPE 
          39.95           51.95 
  HTR2C MUTATED HTR2C WILD-TYPE 
           1.02           12.51 
[1] "1.0 - 40.0 (1.0)"  "0.9 - 52.0 (12.5)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE"   "HTR2C MUTATED" "HTR2C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HTR2C WILD-TYPE"   "HTR2C MUTATED" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE"   "HTR2C MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "HTR2C MUTATED" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE"   "HTR2C MUTATED" "HTR2C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE"   "HTR2C MUTATED" "HTR2C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HTR2C WILD-TYPE"   "HTR2C MUTATED" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE"   "HTR2C MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "HTR2C MUTATED" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE"   "HTR2C MUTATED" "HTR2C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE"   "HTR2C MUTATED" "HTR2C WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"HTR2C WILD-TYPE"   "HTR2C MUTATED" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE"   "HTR2C MUTATED" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
  "HTR2C MUTATED" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE"   "HTR2C MUTATED" "HTR2C WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"HTR2C WILD-TYPE" "HTR2C WILD-TYPE" "HTR2C WILD-TYPE" 
[1] "hr=" "1.5"
D191V2, continuous
D191V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HTR2C MUTATED      0    6
  HTR2C WILD-TYPE   77   72
        clus
vv       HTR2C MUTATED HTR2C WILD-TYPE
  FEMALE             0              77
  MALE               6              72
D191V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HTR2C MUTATED      5    1
  HTR2C WILD-TYPE  123   23
                               clus
vv                              HTR2C MUTATED HTR2C WILD-TYPE
  COLON ADENOCARCINOMA                      5             123
  COLON MUCINOUS ADENOCARCINOMA             1              23
D191V5, multiclass
    clus
vv   HTR2C MUTATED HTR2C WILD-TYPE
  T1             0               4
  T2             3              30
  T3             3             100
  T4             0              14
D191V6, multiclass
    clus
vv   HTR2C MUTATED HTR2C WILD-TYPE
  N0             4              87
  N1             1              29
  N2             1              33
D191V7, multiclass
     clus
vv    HTR2C MUTATED HTR2C WILD-TYPE
  M0              4             126
  M1              1              20
  M1A             0               1
D191V8, multiclass
     clus
vv    HTR2C MUTATED HTR2C WILD-TYPE
  I               2              28
  II              1              56
  III             1              43
  IV              1              20

Clustering(192) Variable = PLSCR2 MUTATION ANALYSIS
D192V1, survival
                  sevent
clus2               0  1
  PLSCR2 MUTATED    3  0
  PLSCR2 WILD-TYPE 65 11
  PLSCR2 MUTATED PLSCR2 WILD-TYPE 
               3               76 
  PLSCR2 MUTATED PLSCR2 WILD-TYPE 
               0               11 
$`PLSCR2 MUTATED`
TCGA-A6-2676 TCGA-AA-3977 TCGA-AA-A010 
       14.70         1.02        20.98 

$`PLSCR2 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        16.54        17.19        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         0.99         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       17.00         4.01        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  PLSCR2 MUTATED PLSCR2 WILD-TYPE 
            1.02             0.92 
  PLSCR2 MUTATED PLSCR2 WILD-TYPE 
           20.98            51.95 
  PLSCR2 MUTATED PLSCR2 WILD-TYPE 
           14.70            11.46 
[1] "1.0 - 21.0 (14.7)" "0.9 - 52.0 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE"   "PLSCR2 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE"   "PLSCR2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PLSCR2 MUTATED" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE"   "PLSCR2 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE"   "PLSCR2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PLSCR2 MUTATED" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE"   "PLSCR2 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE"   "PLSCR2 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "PLSCR2 MUTATED" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" "PLSCR2 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D192V2, continuous
D192V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PLSCR2 MUTATED      4    1
  PLSCR2 WILD-TYPE   73   77
        clus
vv       PLSCR2 MUTATED PLSCR2 WILD-TYPE
  FEMALE              4               73
  MALE                1               77
D192V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PLSCR2 MUTATED      4    1
  PLSCR2 WILD-TYPE  124   23
                               clus
vv                              PLSCR2 MUTATED PLSCR2 WILD-TYPE
  COLON ADENOCARCINOMA                       4              124
  COLON MUCINOUS ADENOCARCINOMA              1               23
D192V5, multiclass
    clus
vv   PLSCR2 MUTATED PLSCR2 WILD-TYPE
  T1              0                4
  T2              2               31
  T3              1              102
  T4              1               13
D192V6, multiclass
    clus
vv   PLSCR2 MUTATED PLSCR2 WILD-TYPE
  N0              5               86
  N1              0               30
  N2              0               34
D192V7, multiclass
     clus
vv    PLSCR2 MUTATED PLSCR2 WILD-TYPE
  M0               4              126
  M1               0               21
  M1A              0                1
D192V8, multiclass
     clus
vv    PLSCR2 MUTATED PLSCR2 WILD-TYPE
  I                1               29
  II               3               54
  III              0               44
  IV               0               21

Clustering(193) Variable = PWP1 MUTATION ANALYSIS
D193V1, survival
                sevent
clus2             0  1
  PWP1 MUTATED    1  1
  PWP1 WILD-TYPE 67 10
  PWP1 MUTATED PWP1 WILD-TYPE 
             2             77 
  PWP1 MUTATED PWP1 WILD-TYPE 
             1             10 
$`PWP1 MUTATED`
TCGA-AA-3966 TCGA-AA-A00N 
        1.02         4.01 

$`PWP1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         0.99         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       14.99        21.99        20.98        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  PWP1 MUTATED PWP1 WILD-TYPE 
          1.02           0.92 
  PWP1 MUTATED PWP1 WILD-TYPE 
          4.01          51.95 
  PWP1 MUTATED PWP1 WILD-TYPE 
         2.515         12.000 
[1] "1.0 - 4.0 (2.5)"   "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PWP1 WILD-TYPE"   "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PWP1 WILD-TYPE"   "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PWP1 WILD-TYPE"   "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PWP1 WILD-TYPE"   "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"PWP1 WILD-TYPE"   "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"PWP1 WILD-TYPE"   "PWP1 MUTATED" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
[1] "Remove cluster labels:" "PWP1 MUTATED"          
clus
  PWP1 MUTATED PWP1 WILD-TYPE 
             2             77 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3975     TCGA-AA-3977     TCGA-AA-3986 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D     TCGA-AA-A00E 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K     TCGA-AA-A00L 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00O     TCGA-AA-A00Q     TCGA-AA-A00R     TCGA-AA-A00U 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A00W     TCGA-AA-A00Z     TCGA-AA-A010     TCGA-AA-A017 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01D     TCGA-AA-A01F     TCGA-AA-A01G     TCGA-AA-A01I 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01K     TCGA-AA-A01P     TCGA-AA-A01Q     TCGA-AA-A01R 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01S     TCGA-AA-A01T     TCGA-AA-A01V     TCGA-AA-A01X 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A01Z     TCGA-AA-A024     TCGA-AA-A029     TCGA-AA-A02F 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A02H     TCGA-AA-A02J     TCGA-AA-A02O     TCGA-AA-A02W 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AA-A02Y     TCGA-AA-A03F     TCGA-AA-A03J     TCGA-AY-4070 
"PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" "PWP1 WILD-TYPE" 
    TCGA-AY-4071 
"PWP1 WILD-TYPE" 
D193V2, continuous
D193V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PWP1 MUTATED      2    5
  PWP1 WILD-TYPE   75   73
        clus
vv       PWP1 MUTATED PWP1 WILD-TYPE
  FEMALE            2             75
  MALE              5             73
D193V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PWP1 MUTATED      4    3
  PWP1 WILD-TYPE  124   21
                               clus
vv                              PWP1 MUTATED PWP1 WILD-TYPE
  COLON ADENOCARCINOMA                     4            124
  COLON MUCINOUS ADENOCARCINOMA            3             21
D193V5, multiclass
    clus
vv   PWP1 MUTATED PWP1 WILD-TYPE
  T1            0              4
  T2            2             31
  T3            4             99
  T4            1             13
D193V6, multiclass
    clus
vv   PWP1 MUTATED PWP1 WILD-TYPE
  N0            4             87
  N1            2             28
  N2            1             33
D193V7, multiclass
     clus
vv    PWP1 MUTATED PWP1 WILD-TYPE
  M0             6            124
  M1             1             20
  M1A            0              1
D193V8, multiclass
     clus
vv    PWP1 MUTATED PWP1 WILD-TYPE
  I              2             28
  II             2             55
  III            2             42
  IV             1             20

Clustering(194) Variable = COL4A5 MUTATION ANALYSIS
D194V1, survival
                  sevent
clus2               0  1
  COL4A5 MUTATED    7  1
  COL4A5 WILD-TYPE 61 10
  COL4A5 MUTATED COL4A5 WILD-TYPE 
               8               71 
  COL4A5 MUTATED COL4A5 WILD-TYPE 
               1               10 
$`COL4A5 MUTATED`
TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3848 TCGA-AA-3947 TCGA-AA-3977 
        0.99         1.02         0.99         0.99         0.99         1.02 
TCGA-AA-A010 TCGA-AA-A01P 
       20.98        38.07 

$`COL4A5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3877 
        1.02         1.02         0.92         0.99         1.02         0.99 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 
        0.99         1.02         0.99         1.02         1.02         0.99 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R 
       13.02        12.00        12.00        13.02         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  COL4A5 MUTATED COL4A5 WILD-TYPE 
            0.99             0.92 
  COL4A5 MUTATED COL4A5 WILD-TYPE 
           38.07            51.95 
  COL4A5 MUTATED COL4A5 WILD-TYPE 
           1.005           13.020 
[1] "1.0 - 38.1 (1.0)"  "0.9 - 52.0 (13.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "COL4A5 MUTATED" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL4A5 WILD-TYPE"   "COL4A5 MUTATED" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL4A5 WILD-TYPE"   "COL4A5 MUTATED" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" "COL4A5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "COL4A5 MUTATED" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "COL4A5 MUTATED" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL4A5 WILD-TYPE"   "COL4A5 MUTATED" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL4A5 WILD-TYPE"   "COL4A5 MUTATED" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" "COL4A5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "COL4A5 MUTATED" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "COL4A5 MUTATED" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"COL4A5 WILD-TYPE"   "COL4A5 MUTATED" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"COL4A5 WILD-TYPE"   "COL4A5 MUTATED" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" "COL4A5 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "COL4A5 MUTATED" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE"   "COL4A5 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" "COL4A5 WILD-TYPE" 
[1] "hr=" "1.3"
D194V2, continuous
D194V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL4A5 MUTATED     10    3
  COL4A5 WILD-TYPE   67   75
        clus
vv       COL4A5 MUTATED COL4A5 WILD-TYPE
  FEMALE             10               67
  MALE                3               75
D194V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL4A5 MUTATED     10    3
  COL4A5 WILD-TYPE  118   21
                               clus
vv                              COL4A5 MUTATED COL4A5 WILD-TYPE
  COLON ADENOCARCINOMA                      10              118
  COLON MUCINOUS ADENOCARCINOMA              3               21
D194V5, multiclass
    clus
vv   COL4A5 MUTATED COL4A5 WILD-TYPE
  T1              0                4
  T2              1               32
  T3             10               93
  T4              2               12
D194V6, multiclass
    clus
vv   COL4A5 MUTATED COL4A5 WILD-TYPE
  N0              7               84
  N1              3               27
  N2              3               31
D194V7, multiclass
     clus
vv    COL4A5 MUTATED COL4A5 WILD-TYPE
  M0              11              119
  M1               1               20
  M1A              0                1
D194V8, multiclass
     clus
vv    COL4A5 MUTATED COL4A5 WILD-TYPE
  I                0               30
  II               6               51
  III              5               39
  IV               1               20

Clustering(195) Variable = RYR3 MUTATION ANALYSIS
D195V1, survival
                sevent
clus2             0  1
  RYR3 MUTATED    9  2
  RYR3 WILD-TYPE 59  9
  RYR3 MUTATED RYR3 WILD-TYPE 
            11             68 
  RYR3 MUTATED RYR3 WILD-TYPE 
             2              9 
$`RYR3 MUTATED`
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3837 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A010 TCGA-AA-A02O 
        1.02         4.01        27.02        20.98         0.92 

$`RYR3 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 
        0.99         1.02         1.02         0.99         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        0.99         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3947 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       18.02        17.00        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        2.01         5.03        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  RYR3 MUTATED RYR3 WILD-TYPE 
          0.92           0.92 
  RYR3 MUTATED RYR3 WILD-TYPE 
         27.02          51.95 
  RYR3 MUTATED RYR3 WILD-TYPE 
         1.020         13.465 
[1] "0.9 - 27.0 (1.0)"  "0.9 - 52.0 (13.5)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RYR3 WILD-TYPE"   "RYR3 MUTATED"   "RYR3 MUTATED" "RYR3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RYR3 WILD-TYPE"   "RYR3 MUTATED" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RYR3 WILD-TYPE"   "RYR3 MUTATED" "RYR3 WILD-TYPE"   "RYR3 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
  "RYR3 MUTATED" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE"   "RYR3 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RYR3 WILD-TYPE"   "RYR3 MUTATED"   "RYR3 MUTATED" "RYR3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "RYR3 MUTATED" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "RYR3 MUTATED" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RYR3 WILD-TYPE"   "RYR3 MUTATED"   "RYR3 MUTATED" "RYR3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RYR3 WILD-TYPE"   "RYR3 MUTATED" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RYR3 WILD-TYPE"   "RYR3 MUTATED" "RYR3 WILD-TYPE"   "RYR3 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
  "RYR3 MUTATED" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE"   "RYR3 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RYR3 WILD-TYPE"   "RYR3 MUTATED"   "RYR3 MUTATED" "RYR3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "RYR3 MUTATED" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "RYR3 MUTATED" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"RYR3 WILD-TYPE"   "RYR3 MUTATED"   "RYR3 MUTATED" "RYR3 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"RYR3 WILD-TYPE"   "RYR3 MUTATED" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"RYR3 WILD-TYPE"   "RYR3 MUTATED" "RYR3 WILD-TYPE"   "RYR3 MUTATED" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
  "RYR3 MUTATED" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE"   "RYR3 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"RYR3 WILD-TYPE"   "RYR3 MUTATED"   "RYR3 MUTATED" "RYR3 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "RYR3 MUTATED" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
  "RYR3 MUTATED" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"RYR3 WILD-TYPE" "RYR3 WILD-TYPE" "RYR3 WILD-TYPE" 
[1] "hr=" "2.8"
D195V2, continuous
D195V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RYR3 MUTATED     10    9
  RYR3 WILD-TYPE   67   69
        clus
vv       RYR3 MUTATED RYR3 WILD-TYPE
  FEMALE           10             67
  MALE              9             69
D195V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RYR3 MUTATED     16    3
  RYR3 WILD-TYPE  112   21
                               clus
vv                              RYR3 MUTATED RYR3 WILD-TYPE
  COLON ADENOCARCINOMA                    16            112
  COLON MUCINOUS ADENOCARCINOMA            3             21
D195V5, multiclass
    clus
vv   RYR3 MUTATED RYR3 WILD-TYPE
  T1            1              3
  T2            3             30
  T3           12             91
  T4            3             11
D195V6, multiclass
    clus
vv   RYR3 MUTATED RYR3 WILD-TYPE
  N0           13             78
  N1            4             26
  N2            2             32
D195V7, multiclass
     clus
vv    RYR3 MUTATED RYR3 WILD-TYPE
  M0            17            113
  M1             0             21
  M1A            1              0
D195V8, multiclass
     clus
vv    RYR3 MUTATED RYR3 WILD-TYPE
  I              3             27
  II             9             48
  III            5             39
  IV             1             20

Clustering(196) Variable = SLC8A1 MUTATION ANALYSIS
D196V1, survival
                  sevent
clus2               0  1
  SLC8A1 MUTATED    7  0
  SLC8A1 WILD-TYPE 61 11
  SLC8A1 MUTATED SLC8A1 WILD-TYPE 
               7               72 
  SLC8A1 MUTATED SLC8A1 WILD-TYPE 
               0               11 
$`SLC8A1 MUTATED`
TCGA-AA-3555 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3949 TCGA-AA-3977 TCGA-AA-A00E 
        0.99         1.02         0.99         0.99         1.02        30.02 
TCGA-AA-A010 
       20.98 

$`SLC8A1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3811 TCGA-AA-3818 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 
        0.99         0.99         1.02         0.99         1.02         1.02 
TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F 
        0.99         0.99        13.94        18.02        19.00        34.03 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
       18.02        18.02        17.00         4.01        27.02        27.02 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D 
        0.99        17.00        14.99        21.99        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  SLC8A1 MUTATED SLC8A1 WILD-TYPE 
            0.99             0.92 
  SLC8A1 MUTATED SLC8A1 WILD-TYPE 
           30.02            51.95 
  SLC8A1 MUTATED SLC8A1 WILD-TYPE 
            1.02            12.51 
[1] "1.0 - 30.0 (1.0)"  "0.9 - 52.0 (12.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED"   "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED"   "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED"   "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE"   "SLC8A1 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SLC8A1 MUTATED" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" "SLC8A1 WILD-TYPE" 
[1] "hr="     "7.4e+07"
D196V2, continuous
D196V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC8A1 MUTATED      8    3
  SLC8A1 WILD-TYPE   69   75
        clus
vv       SLC8A1 MUTATED SLC8A1 WILD-TYPE
  FEMALE              8               69
  MALE                3               75
D196V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC8A1 MUTATED      8    3
  SLC8A1 WILD-TYPE  120   21
                               clus
vv                              SLC8A1 MUTATED SLC8A1 WILD-TYPE
  COLON ADENOCARCINOMA                       8              120
  COLON MUCINOUS ADENOCARCINOMA              3               21
D196V5, multiclass
    clus
vv   SLC8A1 MUTATED SLC8A1 WILD-TYPE
  T1              1                3
  T2              2               31
  T3              7               96
  T4              1               13
D196V6, multiclass
    clus
vv   SLC8A1 MUTATED SLC8A1 WILD-TYPE
  N0              9               82
  N1              2               28
  N2              0               34
D196V7, multiclass
     clus
vv    SLC8A1 MUTATED SLC8A1 WILD-TYPE
  M0              10              120
  M1               0               21
  M1A              0                1
D196V8, multiclass
     clus
vv    SLC8A1 MUTATED SLC8A1 WILD-TYPE
  I                2               28
  II               6               51
  III              2               42
  IV               0               21

Clustering(197) Variable = TMBIM4 MUTATION ANALYSIS
D197V1, survival
                  sevent
clus2               0  1
  TMBIM4 MUTATED    1  0
  TMBIM4 WILD-TYPE 67 11
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               1               78 
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               0               11 
$`TMBIM4 MUTATED`
TCGA-AA-3977 
        1.02 

$`TMBIM4 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D 
       17.00        14.99        21.99        20.98        15.02         0.99 
TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q 
       13.02        12.00        12.00        13.02        38.07         1.02 
TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z 
       35.01         1.02        33.04        35.01        26.01        20.98 
TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O 
       39.06        51.95        39.95         2.01         5.03         0.92 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.96        39.95        18.02        40.93        16.31         0.95 

  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
            1.02             0.92 
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
            1.02            51.95 
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 1.0 (1.0)"   "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE"   "TMBIM4 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE"   "TMBIM4 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE"   "TMBIM4 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
[1] "Remove cluster labels:" "TMBIM4 MUTATED"        
clus
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               1               78 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3986 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
D197V2, continuous
D197V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TMBIM4 MUTATED      1    2
  TMBIM4 WILD-TYPE   76   76
        clus
vv       TMBIM4 MUTATED TMBIM4 WILD-TYPE
  FEMALE              1               76
  MALE                2               76
D197V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TMBIM4 MUTATED      3    0
  TMBIM4 WILD-TYPE  125   24
                               clus
vv                              TMBIM4 MUTATED TMBIM4 WILD-TYPE
  COLON ADENOCARCINOMA                       3              125
  COLON MUCINOUS ADENOCARCINOMA              0               24
D197V5, multiclass
    clus
vv   TMBIM4 MUTATED TMBIM4 WILD-TYPE
  T1              0                4
  T2              2               31
  T3              0              103
  T4              1               13
D197V6, multiclass
    clus
vv   TMBIM4 MUTATED TMBIM4 WILD-TYPE
  N0              2               89
  N1              1               29
  N2              0               34
D197V7, multiclass
[1] "Remove cluster labels:" "TMBIM4 MUTATED"        
clus
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               2              150 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3517       TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3521       TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3526       TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3531       TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3542       TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3549       TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3556       TCGA-AA-3560       TCGA-AA-3561 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3562       TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3672 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3673       TCGA-AA-3678       TCGA-AA-3679       TCGA-AA-3680 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3681       TCGA-AA-3684       TCGA-AA-3685       TCGA-AA-3688 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3692       TCGA-AA-3693       TCGA-AA-3695       TCGA-AA-3696 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3814       TCGA-AA-3818       TCGA-AA-3819       TCGA-AA-3821 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3831       TCGA-AA-3833       TCGA-AA-3837       TCGA-AA-3842 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3844       TCGA-AA-3845       TCGA-AA-3846       TCGA-AA-3848 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3850       TCGA-AA-3851       TCGA-AA-3852       TCGA-AA-3854 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3855       TCGA-AA-3856       TCGA-AA-3858       TCGA-AA-3860 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3864       TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3870       TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3930       TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3949       TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3966       TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3975 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3976       TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3984       TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A022       TCGA-AA-A024 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
D197V8, multiclass
[1] "Remove cluster labels:" "TMBIM4 MUTATED"        
clus
  TMBIM4 MUTATED TMBIM4 WILD-TYPE 
               2              150 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2676       TCGA-A6-2677 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807       TCGA-A6-3808 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-A6-3810       TCGA-AA-3514       TCGA-AA-3516       TCGA-AA-3517 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3518       TCGA-AA-3519       TCGA-AA-3520       TCGA-AA-3521 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3522       TCGA-AA-3524       TCGA-AA-3525       TCGA-AA-3526 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3527       TCGA-AA-3529       TCGA-AA-3530       TCGA-AA-3531 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3532       TCGA-AA-3534       TCGA-AA-3538       TCGA-AA-3542 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3543       TCGA-AA-3544       TCGA-AA-3548       TCGA-AA-3549 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3552       TCGA-AA-3553       TCGA-AA-3554       TCGA-AA-3555 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3556       TCGA-AA-3560       TCGA-AA-3561       TCGA-AA-3562 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3664       TCGA-AA-3666       TCGA-AA-3672       TCGA-AA-3673 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3678       TCGA-AA-3679       TCGA-AA-3680       TCGA-AA-3681 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3684       TCGA-AA-3685       TCGA-AA-3688       TCGA-AA-3692 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3693       TCGA-AA-3695       TCGA-AA-3696       TCGA-AA-3710 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3715       TCGA-AA-3811       TCGA-AA-3812       TCGA-AA-3814 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3819       TCGA-AA-3821       TCGA-AA-3831 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3833       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3845       TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3850 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3851       TCGA-AA-3852       TCGA-AA-3854       TCGA-AA-3855 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3856       TCGA-AA-3858       TCGA-AA-3860       TCGA-AA-3864 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3866       TCGA-AA-3867       TCGA-AA-3869       TCGA-AA-3870 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3872       TCGA-AA-3875       TCGA-AA-3877       TCGA-AA-3930 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3955       TCGA-AA-3956       TCGA-AA-3966 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3971       TCGA-AA-3972       TCGA-AA-3975       TCGA-AA-3976 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3979       TCGA-AA-3980       TCGA-AA-3982       TCGA-AA-3984 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-3989       TCGA-AA-3994       TCGA-AA-A004 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00A       TCGA-AA-A00D       TCGA-AA-A00E       TCGA-AA-A00F 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L       TCGA-AA-A00N 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R       TCGA-AA-A00U 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A010       TCGA-AA-A017 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q       TCGA-AA-A01R 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V       TCGA-AA-A01X 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A01Z       TCGA-AA-A022       TCGA-AA-A024       TCGA-AA-A029 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 
      TCGA-AY-4070       TCGA-AY-4071 
"TMBIM4 WILD-TYPE" "TMBIM4 WILD-TYPE" 

Clustering(198) Variable = ZNF677 MUTATION ANALYSIS
D198V1, survival
                  sevent
clus2               0  1
  ZNF677 MUTATED    5  0
  ZNF677 WILD-TYPE 63 11
  ZNF677 MUTATED ZNF677 WILD-TYPE 
               5               74 
  ZNF677 MUTATED ZNF677 WILD-TYPE 
               0               11 
$`ZNF677 MUTATED`
TCGA-A6-2672 TCGA-AA-3715 TCGA-AA-3947 TCGA-AA-3977 TCGA-AA-A010 
       16.54         0.99         0.99         1.02        20.98 

$`ZNF677 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2683 
       13.91        17.19        14.70        17.79        14.37        15.52 
TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 
       10.92         9.14         8.09         1.02         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3811 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3949 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D 
        1.02         0.99         0.99        13.94        18.02        19.00 
TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       30.02        34.03        18.02        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z 
       27.02        27.02         0.99        17.00        14.99        21.99 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  ZNF677 MUTATED ZNF677 WILD-TYPE 
            0.99             0.92 
  ZNF677 MUTATED ZNF677 WILD-TYPE 
           20.98            51.95 
  ZNF677 MUTATED ZNF677 WILD-TYPE 
            1.02            12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" "ZNF677 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE"   "ZNF677 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF677 MUTATED" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" "ZNF677 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D198V2, continuous
D198V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF677 MUTATED      4    4
  ZNF677 WILD-TYPE   73   74
        clus
vv       ZNF677 MUTATED ZNF677 WILD-TYPE
  FEMALE              4               73
  MALE                4               74
D198V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF677 MUTATED      6    2
  ZNF677 WILD-TYPE  122   22
                               clus
vv                              ZNF677 MUTATED ZNF677 WILD-TYPE
  COLON ADENOCARCINOMA                       6              122
  COLON MUCINOUS ADENOCARCINOMA              2               22
D198V5, multiclass
    clus
vv   ZNF677 MUTATED ZNF677 WILD-TYPE
  T1              0                4
  T2              2               31
  T3              4               99
  T4              2               12
D198V6, multiclass
    clus
vv   ZNF677 MUTATED ZNF677 WILD-TYPE
  N0              6               85
  N1              1               29
  N2              1               33
D198V7, multiclass
     clus
vv    ZNF677 MUTATED ZNF677 WILD-TYPE
  M0               7              123
  M1               0               21
  M1A              0                1
D198V8, multiclass
     clus
vv    ZNF677 MUTATED ZNF677 WILD-TYPE
  I                1               29
  II               4               53
  III              2               42
  IV               0               21

Clustering(199) Variable = FAM133A MUTATION ANALYSIS
D199V1, survival
                   sevent
clus2                0  1
  FAM133A MUTATED    2  0
  FAM133A WILD-TYPE 66 11
  FAM133A MUTATED FAM133A WILD-TYPE 
                2                77 
  FAM133A MUTATED FAM133A WILD-TYPE 
                0                11 
$`FAM133A MUTATED`
TCGA-AA-3977 TCGA-AA-A010 
        1.02        20.98 

$`FAM133A WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  FAM133A MUTATED FAM133A WILD-TYPE 
             1.02              0.92 
  FAM133A MUTATED FAM133A WILD-TYPE 
            20.98             51.95 
  FAM133A MUTATED FAM133A WILD-TYPE 
               11                12 
[1] "1.0 - 21.0 (11.0)" "0.9 - 52.0 (12.0)"
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE"   "FAM133A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE"   "FAM133A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3977 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE"   "FAM133A MUTATED" 
       TCGA-AA-3986        TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00E        TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00L        TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00R        TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A010        TCGA-AA-A017        TCGA-AA-A01D        TCGA-AA-A01F 
  "FAM133A MUTATED" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01G        TCGA-AA-A01I        TCGA-AA-A01K        TCGA-AA-A01P 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01Q        TCGA-AA-A01R        TCGA-AA-A01S        TCGA-AA-A01T 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01V        TCGA-AA-A01X        TCGA-AA-A01Z        TCGA-AA-A024 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A029        TCGA-AA-A02F        TCGA-AA-A02H        TCGA-AA-A02J 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A02O        TCGA-AA-A02W        TCGA-AA-A02Y        TCGA-AA-A03F 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A03J        TCGA-AY-4070        TCGA-AY-4071 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
[1] "Remove cluster labels:" "FAM133A MUTATED"       
clus
  FAM133A MUTATED FAM133A WILD-TYPE 
                2                77 
       TCGA-A6-2670        TCGA-A6-2672        TCGA-A6-2674        TCGA-A6-2676 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-2677        TCGA-A6-2678        TCGA-A6-2683        TCGA-A6-3807 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-A6-3808        TCGA-A6-3810        TCGA-AA-3518        TCGA-AA-3526 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3555        TCGA-AA-3562        TCGA-AA-3666        TCGA-AA-3679 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3685        TCGA-AA-3710        TCGA-AA-3715        TCGA-AA-3811 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3818        TCGA-AA-3837        TCGA-AA-3842        TCGA-AA-3844 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3846        TCGA-AA-3848        TCGA-AA-3854        TCGA-AA-3877 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3939        TCGA-AA-3941        TCGA-AA-3947        TCGA-AA-3949 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-3952        TCGA-AA-3966        TCGA-AA-3975        TCGA-AA-3986 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A004        TCGA-AA-A00A        TCGA-AA-A00D        TCGA-AA-A00E 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00F        TCGA-AA-A00J        TCGA-AA-A00K        TCGA-AA-A00L 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00N        TCGA-AA-A00O        TCGA-AA-A00Q        TCGA-AA-A00R 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A00U        TCGA-AA-A00W        TCGA-AA-A00Z        TCGA-AA-A017 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01D        TCGA-AA-A01F        TCGA-AA-A01G        TCGA-AA-A01I 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01K        TCGA-AA-A01P        TCGA-AA-A01Q        TCGA-AA-A01R 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01S        TCGA-AA-A01T        TCGA-AA-A01V        TCGA-AA-A01X 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A01Z        TCGA-AA-A024        TCGA-AA-A029        TCGA-AA-A02F 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A02H        TCGA-AA-A02J        TCGA-AA-A02O        TCGA-AA-A02W 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AA-A02Y        TCGA-AA-A03F        TCGA-AA-A03J        TCGA-AY-4070 
"FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" "FAM133A WILD-TYPE" 
       TCGA-AY-4071 
"FAM133A WILD-TYPE" 
D199V2, continuous
D199V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM133A MUTATED      4    1
  FAM133A WILD-TYPE   73   77
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  FEMALE               4                73
  MALE                 1                77
D199V4, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM133A MUTATED      5    0
  FAM133A WILD-TYPE  123   24
                               clus
vv                              FAM133A MUTATED FAM133A WILD-TYPE
  COLON ADENOCARCINOMA                        5               123
  COLON MUCINOUS ADENOCARCINOMA               0                24
D199V5, multiclass
    clus
vv   FAM133A MUTATED FAM133A WILD-TYPE
  T1               0                 4
  T2               1                32
  T3               3               100
  T4               1                13
D199V6, multiclass
    clus
vv   FAM133A MUTATED FAM133A WILD-TYPE
  N0               4                87
  N1               1                29
  N2               0                34
D199V7, multiclass
     clus
vv    FAM133A MUTATED FAM133A WILD-TYPE
  M0                4               126
  M1                0                21
  M1A               0                 1
D199V8, multiclass
     clus
vv    FAM133A MUTATED FAM133A WILD-TYPE
  I                 0                30
  II                3                54
  III               1                43
  IV                0                21

Clustering(200) Variable = ZNF208 MUTATION ANALYSIS
D200V1, survival
                  sevent
clus2               0  1
  ZNF208 MUTATED    2  1
  ZNF208 WILD-TYPE 66 10
  ZNF208 MUTATED ZNF208 WILD-TYPE 
               3               76 
  ZNF208 MUTATED ZNF208 WILD-TYPE 
               1               10 
$`ZNF208 MUTATED`
TCGA-AA-3977 TCGA-AA-A00N TCGA-AA-A010 
        1.02         4.01        20.98 

$`ZNF208 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J 
       13.94        18.02        19.00        30.02        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U 
       18.02        17.00        27.02        27.02         0.99        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       14.99        21.99        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  ZNF208 MUTATED ZNF208 WILD-TYPE 
            1.02             0.92 
  ZNF208 MUTATED ZNF208 WILD-TYPE 
           20.98            51.95 
  ZNF208 MUTATED ZNF208 WILD-TYPE 
            4.01            12.00 
[1] "1.0 - 21.0 (4.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE"   "ZNF208 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF208 WILD-TYPE"   "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE"   "ZNF208 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF208 WILD-TYPE"   "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE"   "ZNF208 MUTATED" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ZNF208 WILD-TYPE"   "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "ZNF208 MUTATED" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" "ZNF208 WILD-TYPE" 
[1] "hr=" "2.9"
D200V2, continuous
D200V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF208 MUTATED      3    5
  ZNF208 WILD-TYPE   74   73
        clus
vv       ZNF208 MUTATED ZNF208 WILD-TYPE
  FEMALE              3               74
  MALE                5               73
D200V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF208 MUTATED      6    2
  ZNF208 WILD-TYPE  122   22
                               clus
vv                              ZNF208 MUTATED ZNF208 WILD-TYPE
  COLON ADENOCARCINOMA                       6              122
  COLON MUCINOUS ADENOCARCINOMA              2               22
D200V5, multiclass
    clus
vv   ZNF208 MUTATED ZNF208 WILD-TYPE
  T1              0                4
  T2              2               31
  T3              3              100
  T4              3               11
D200V6, multiclass
    clus
vv   ZNF208 MUTATED ZNF208 WILD-TYPE
  N0              4               87
  N1              3               27
  N2              1               33
D200V7, multiclass
     clus
vv    ZNF208 MUTATED ZNF208 WILD-TYPE
  M0               4              126
  M1               3               18
  M1A              0                1
D200V8, multiclass
     clus
vv    ZNF208 MUTATED ZNF208 WILD-TYPE
  I                0               30
  II               3               54
  III              1               43
  IV               3               18

Clustering(201) Variable = ARFIP1 MUTATION ANALYSIS
D201V1, survival
                  sevent
clus2               0  1
  ARFIP1 MUTATED    2  2
  ARFIP1 WILD-TYPE 66  9
  ARFIP1 MUTATED ARFIP1 WILD-TYPE 
               4               75 
  ARFIP1 MUTATED ARFIP1 WILD-TYPE 
               2                9 
$`ARFIP1 MUTATED`
TCGA-AA-3518 TCGA-AA-3975 TCGA-AA-A00N TCGA-AA-A01P 
        1.02         0.99         4.01        38.07 

$`ARFIP1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3526 TCGA-AA-3555 
       15.52        10.92         9.14         8.09         0.99         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        0.99         1.02         1.02         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       12.00        13.02         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  ARFIP1 MUTATED ARFIP1 WILD-TYPE 
            0.99             0.92 
  ARFIP1 MUTATED ARFIP1 WILD-TYPE 
           38.07            51.95 
  ARFIP1 MUTATED ARFIP1 WILD-TYPE 
           2.515           12.000 
[1] "1.0 - 38.1 (2.5)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE"   "ARFIP1 MUTATED" "ARFIP1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE"   "ARFIP1 MUTATED" "ARFIP1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ARFIP1 WILD-TYPE"   "ARFIP1 MUTATED" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE"   "ARFIP1 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE"   "ARFIP1 MUTATED" "ARFIP1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE"   "ARFIP1 MUTATED" "ARFIP1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ARFIP1 WILD-TYPE"   "ARFIP1 MUTATED" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE"   "ARFIP1 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE"   "ARFIP1 MUTATED" "ARFIP1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE"   "ARFIP1 MUTATED" "ARFIP1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"ARFIP1 WILD-TYPE"   "ARFIP1 MUTATED" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE"   "ARFIP1 MUTATED" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" "ARFIP1 WILD-TYPE" 
[1] "hr=" "4.6"
D201V2, continuous
D201V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARFIP1 MUTATED      2    3
  ARFIP1 WILD-TYPE   75   75
        clus
vv       ARFIP1 MUTATED ARFIP1 WILD-TYPE
  FEMALE              2               75
  MALE                3               75
D201V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ARFIP1 MUTATED      4    1
  ARFIP1 WILD-TYPE  124   23
                               clus
vv                              ARFIP1 MUTATED ARFIP1 WILD-TYPE
  COLON ADENOCARCINOMA                       4              124
  COLON MUCINOUS ADENOCARCINOMA              1               23
D201V5, multiclass
    clus
vv   ARFIP1 MUTATED ARFIP1 WILD-TYPE
  T1              0                4
  T2              2               31
  T3              2              101
  T4              1               13
D201V6, multiclass
    clus
vv   ARFIP1 MUTATED ARFIP1 WILD-TYPE
  N0              4               87
  N1              1               29
  N2              0               34
D201V7, multiclass
     clus
vv    ARFIP1 MUTATED ARFIP1 WILD-TYPE
  M0               4              126
  M1               0               21
  M1A              0                1
D201V8, multiclass
     clus
vv    ARFIP1 MUTATED ARFIP1 WILD-TYPE
  I                1               29
  II               2               55
  III              1               43
  IV               0               21

Clustering(202) Variable = ADAMTS12 MUTATION ANALYSIS
D202V1, survival
                    sevent
clus2                 0  1
  ADAMTS12 MUTATED   10  1
  ADAMTS12 WILD-TYPE 58 10
  ADAMTS12 MUTATED ADAMTS12 WILD-TYPE 
                11                 68 
  ADAMTS12 MUTATED ADAMTS12 WILD-TYPE 
                 1                 10 
$`ADAMTS12 MUTATED`
TCGA-AA-3562 TCGA-AA-3710 TCGA-AA-3811 TCGA-AA-3877 TCGA-AA-3949 TCGA-AA-3975 
        1.02         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A00R TCGA-AA-A010 TCGA-AA-A017 
       18.02         4.01         0.99        20.98        15.02 

$`ADAMTS12 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3715 TCGA-AA-3818 
        0.99         1.02         0.99         0.99         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        1.02         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3977 
        0.99         1.02         0.99         1.02         1.02         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
        0.99        13.94        18.02        19.00        30.02        34.03 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W 
       18.02        17.00        27.02        27.02        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       21.99         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  ADAMTS12 MUTATED ADAMTS12 WILD-TYPE 
              0.99               0.92 
  ADAMTS12 MUTATED ADAMTS12 WILD-TYPE 
             20.98              51.95 
  ADAMTS12 MUTATED ADAMTS12 WILD-TYPE 
              1.02              13.02 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (13.0)"
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED"   "ADAMTS12 MUTATED" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AY-4071 
"ADAMTS12 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED"   "ADAMTS12 MUTATED" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AY-4071 
"ADAMTS12 WILD-TYPE" 
        TCGA-A6-2670         TCGA-A6-2672         TCGA-A6-2674 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-2676         TCGA-A6-2677         TCGA-A6-2678 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-2683         TCGA-A6-3807         TCGA-A6-3808 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-A6-3810         TCGA-AA-3518         TCGA-AA-3526 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3555         TCGA-AA-3562         TCGA-AA-3666 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3679         TCGA-AA-3685         TCGA-AA-3710 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" 
        TCGA-AA-3715         TCGA-AA-3811         TCGA-AA-3818 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3837         TCGA-AA-3842         TCGA-AA-3844 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3846         TCGA-AA-3848         TCGA-AA-3854 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3877         TCGA-AA-3939         TCGA-AA-3941 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3947         TCGA-AA-3949         TCGA-AA-3952 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3966         TCGA-AA-3975         TCGA-AA-3977 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-3986         TCGA-AA-A004         TCGA-AA-A00A 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00D         TCGA-AA-A00E         TCGA-AA-A00F 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00J         TCGA-AA-A00K         TCGA-AA-A00L 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00N         TCGA-AA-A00O         TCGA-AA-A00Q 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00R         TCGA-AA-A00U         TCGA-AA-A00W 
  "ADAMTS12 MUTATED" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A00Z         TCGA-AA-A010         TCGA-AA-A017 
"ADAMTS12 WILD-TYPE"   "ADAMTS12 MUTATED"   "ADAMTS12 MUTATED" 
        TCGA-AA-A01D         TCGA-AA-A01F         TCGA-AA-A01G 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01I         TCGA-AA-A01K         TCGA-AA-A01P 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01Q         TCGA-AA-A01R         TCGA-AA-A01S 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01T         TCGA-AA-A01V         TCGA-AA-A01X 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A01Z         TCGA-AA-A024         TCGA-AA-A029 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A02F         TCGA-AA-A02H         TCGA-AA-A02J 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A02O         TCGA-AA-A02W         TCGA-AA-A02Y 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AA-A03F         TCGA-AA-A03J         TCGA-AY-4070 
"ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" "ADAMTS12 WILD-TYPE" 
        TCGA-AY-4071 
"ADAMTS12 WILD-TYPE" 
[1] "hr=" "1.1"
D202V2, continuous
D202V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS12 MUTATED     10    4
  ADAMTS12 WILD-TYPE   67   74
        clus
vv       ADAMTS12 MUTATED ADAMTS12 WILD-TYPE
  FEMALE               10                 67
  MALE                  4                 74
D202V4, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  ADAMTS12 MUTATED     10    4
  ADAMTS12 WILD-TYPE  118   20
                               clus
vv                              ADAMTS12 MUTATED ADAMTS12 WILD-TYPE
  COLON ADENOCARCINOMA                        10                118
  COLON MUCINOUS ADENOCARCINOMA                4                 20
D202V5, multiclass
    clus
vv   ADAMTS12 MUTATED ADAMTS12 WILD-TYPE
  T1                1                  3
  T2                2                 31
  T3                8                 95
  T4                3                 11
D202V6, multiclass
    clus
vv   ADAMTS12 MUTATED ADAMTS12 WILD-TYPE
  N0                9                 82
  N1                3                 27
  N2                2                 32
D202V7, multiclass
     clus
vv    ADAMTS12 MUTATED ADAMTS12 WILD-TYPE
  M0                14                116
  M1                 0                 21
  M1A                0                  1
D202V8, multiclass
     clus
vv    ADAMTS12 MUTATED ADAMTS12 WILD-TYPE
  I                  3                 27
  II                 6                 51
  III                5                 39
  IV                 0                 21

Clustering(203) Variable = ASB5 MUTATION ANALYSIS
D203V1, survival
                sevent
clus2             0  1
  ASB5 MUTATED    4  0
  ASB5 WILD-TYPE 64 11
  ASB5 MUTATED ASB5 WILD-TYPE 
             4             75 
  ASB5 MUTATED ASB5 WILD-TYPE 
             0             11 
$`ASB5 MUTATED`
TCGA-AA-3848 TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A010 
        0.99         1.02         1.02        20.98 

$`ASB5 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3975 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        0.99         1.02         0.99         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L 
       19.00        30.02        34.03        18.02        18.02        17.00 
TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
        4.01        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F 
       35.01        26.01        20.98        39.06        51.95        39.95 
TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F 
        2.01         5.03         0.92        40.96        39.95        18.02 
TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       40.93        16.31         0.95 

  ASB5 MUTATED ASB5 WILD-TYPE 
          0.99           0.92 
  ASB5 MUTATED ASB5 WILD-TYPE 
         20.98          51.95 
  ASB5 MUTATED ASB5 WILD-TYPE 
          1.02          12.00 
[1] "1.0 - 21.0 (1.0)"  "0.9 - 52.0 (12.0)"
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-A6-2670     TCGA-A6-2672     TCGA-A6-2674     TCGA-A6-2676 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-A6-2677     TCGA-A6-2678     TCGA-A6-2683     TCGA-A6-3807 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-A6-3808     TCGA-A6-3810     TCGA-AA-3518     TCGA-AA-3526 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3555     TCGA-AA-3562     TCGA-AA-3666     TCGA-AA-3679 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3685     TCGA-AA-3710     TCGA-AA-3715     TCGA-AA-3811 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3818     TCGA-AA-3837     TCGA-AA-3842     TCGA-AA-3844 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3846     TCGA-AA-3848     TCGA-AA-3854     TCGA-AA-3877 
"ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3939     TCGA-AA-3941     TCGA-AA-3947     TCGA-AA-3949 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-3952     TCGA-AA-3966     TCGA-AA-3975     TCGA-AA-3977 
"ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-AA-3986     TCGA-AA-A004     TCGA-AA-A00A     TCGA-AA-A00D 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A00E     TCGA-AA-A00F     TCGA-AA-A00J     TCGA-AA-A00K 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A00L     TCGA-AA-A00N     TCGA-AA-A00O     TCGA-AA-A00Q 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A00R     TCGA-AA-A00U     TCGA-AA-A00W     TCGA-AA-A00Z 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A010     TCGA-AA-A017     TCGA-AA-A01D     TCGA-AA-A01F 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A01G     TCGA-AA-A01I     TCGA-AA-A01K     TCGA-AA-A01P 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A01Q     TCGA-AA-A01R     TCGA-AA-A01S     TCGA-AA-A01T 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A01V     TCGA-AA-A01X     TCGA-AA-A01Z     TCGA-AA-A024 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A029     TCGA-AA-A02F     TCGA-AA-A02H     TCGA-AA-A02J 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A02O     TCGA-AA-A02W     TCGA-AA-A02Y     TCGA-AA-A03F 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-AA-A03J     TCGA-AY-4070     TCGA-AY-4071 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
[1] "hr="     "2.6e+07"
D203V2, continuous
D203V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ASB5 MUTATED      3    3
  ASB5 WILD-TYPE   74   75
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  FEMALE            3             74
  MALE              3             75
D203V4, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ASB5 MUTATED      5    1
  ASB5 WILD-TYPE  123   23
                               clus
vv                              ASB5 MUTATED ASB5 WILD-TYPE
  COLON ADENOCARCINOMA                     5            123
  COLON MUCINOUS ADENOCARCINOMA            1             23
D203V5, multiclass
    clus
vv   ASB5 MUTATED ASB5 WILD-TYPE
  T1            0              4
  T2            1             32
  T3            4             99
  T4            1             13
D203V6, multiclass
    clus
vv   ASB5 MUTATED ASB5 WILD-TYPE
  N0            4             87
  N1            0             30
  N2            2             32
D203V7, multiclass
     clus
vv    ASB5 MUTATED ASB5 WILD-TYPE
  M0             4            126
  M1             1             20
  M1A            0              1
D203V8, multiclass
     clus
vv    ASB5 MUTATED ASB5 WILD-TYPE
  I              0             30
  II             3             54
  III            1             43
  IV             1             20

Clustering(204) Variable = INSL6 MUTATION ANALYSIS
D204V1, survival
                 sevent
clus2              0  1
  INSL6 MUTATED    3  2
  INSL6 WILD-TYPE 65  9
  INSL6 MUTATED INSL6 WILD-TYPE 
              5              74 
  INSL6 MUTATED INSL6 WILD-TYPE 
              2               9 
$`INSL6 MUTATED`
TCGA-AA-3555 TCGA-AA-3949 TCGA-AA-A00N TCGA-AA-A010 TCGA-AA-A024 
        0.99         0.99         4.01        20.98        39.06 

$`INSL6 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 
        1.02         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 
        1.02         1.02         0.99         1.02         0.99        13.94 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       18.02        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I 
       21.99        15.02         0.99        13.02        12.00        12.00 
TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T 
       13.02        38.07         1.02        35.01         1.02        33.04 
TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       35.01        26.01        20.98        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  INSL6 MUTATED INSL6 WILD-TYPE 
           0.99            0.92 
  INSL6 MUTATED INSL6 WILD-TYPE 
          39.06           51.95 
  INSL6 MUTATED INSL6 WILD-TYPE 
           4.01           12.00 
[1] "1.0 - 39.1 (4.0)"  "0.9 - 52.0 (12.0)"
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "INSL6 MUTATED" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE"   "INSL6 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"INSL6 WILD-TYPE"   "INSL6 MUTATED" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "INSL6 MUTATED" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE"   "INSL6 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "INSL6 MUTATED" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE"   "INSL6 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"INSL6 WILD-TYPE"   "INSL6 MUTATED" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "INSL6 MUTATED" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE"   "INSL6 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-A6-2670      TCGA-A6-2672      TCGA-A6-2674      TCGA-A6-2676 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-A6-2677      TCGA-A6-2678      TCGA-A6-2683      TCGA-A6-3807 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-A6-3808      TCGA-A6-3810      TCGA-AA-3518      TCGA-AA-3526 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-3555      TCGA-AA-3562      TCGA-AA-3666      TCGA-AA-3679 
  "INSL6 MUTATED" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-3685      TCGA-AA-3710      TCGA-AA-3715      TCGA-AA-3811 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-3818      TCGA-AA-3837      TCGA-AA-3842      TCGA-AA-3844 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-3846      TCGA-AA-3848      TCGA-AA-3854      TCGA-AA-3877 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-3939      TCGA-AA-3941      TCGA-AA-3947      TCGA-AA-3949 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE"   "INSL6 MUTATED" 
     TCGA-AA-3952      TCGA-AA-3966      TCGA-AA-3975      TCGA-AA-3977 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-3986      TCGA-AA-A004      TCGA-AA-A00A      TCGA-AA-A00D 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A00E      TCGA-AA-A00F      TCGA-AA-A00J      TCGA-AA-A00K 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A00L      TCGA-AA-A00N      TCGA-AA-A00O      TCGA-AA-A00Q 
"INSL6 WILD-TYPE"   "INSL6 MUTATED" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A00R      TCGA-AA-A00U      TCGA-AA-A00W      TCGA-AA-A00Z 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A010      TCGA-AA-A017      TCGA-AA-A01D      TCGA-AA-A01F 
  "INSL6 MUTATED" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A01G      TCGA-AA-A01I      TCGA-AA-A01K      TCGA-AA-A01P 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A01Q      TCGA-AA-A01R      TCGA-AA-A01S      TCGA-AA-A01T 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A01V      TCGA-AA-A01X      TCGA-AA-A01Z      TCGA-AA-A024 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE"   "INSL6 MUTATED" 
     TCGA-AA-A029      TCGA-AA-A02F      TCGA-AA-A02H      TCGA-AA-A02J 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A02O      TCGA-AA-A02W      TCGA-AA-A02Y      TCGA-AA-A03F 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
     TCGA-AA-A03J      TCGA-AY-4070      TCGA-AY-4071 
"INSL6 WILD-TYPE" "INSL6 WILD-TYPE" "INSL6 WILD-TYPE" 
[1] "hr=" "2.6"
D204V2, continuous
D204V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INSL6 MUTATED      3    2
  INSL6 WILD-TYPE   74   76
        clus
vv       INSL6 MUTATED INSL6 WILD-TYPE
  FEMALE             3              74
  MALE               2              76
D204V4, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  INSL6 MUTATED      1    4
  INSL6 WILD-TYPE  127   20
                               clus
vv                              INSL6 MUTATED INSL6 WILD-TYPE
  COLON ADENOCARCINOMA                      1             127
  COLON MUCINOUS ADENOCARCINOMA             4              20
D204V5, multiclass
    clus
vv   INSL6 MUTATED INSL6 WILD-TYPE
  T1             0               4
  T2             0              33
  T3             3             100
  T4             2              12
D204V6, multiclass
    clus
vv   INSL6 MUTATED INSL6 WILD-TYPE
  N0             4              87
  N1             1              29
  N2             0              34
D204V7, multiclass
     clus
vv    INSL6 MUTATED INSL6 WILD-TYPE
  M0              5             125
  M1              0              21
  M1A             0               1
D204V8, multiclass
     clus
vv    INSL6 MUTATED INSL6 WILD-TYPE
  I               0              30
  II              4              53
  III             1              43
  IV              0              21

Clustering(205) Variable = MAGEB1 MUTATION ANALYSIS
D205V1, survival
                  sevent
clus2               0  1
  MAGEB1 MUTATED    5  0
  MAGEB1 WILD-TYPE 63 11
  MAGEB1 MUTATED MAGEB1 WILD-TYPE 
               5               74 
  MAGEB1 MUTATED MAGEB1 WILD-TYPE 
               0               11 
$`MAGEB1 MUTATED`
TCGA-A6-2676 TCGA-A6-2678 TCGA-AA-3949 TCGA-AA-A00J TCGA-AA-A00R 
       14.70        14.37         0.99        18.02         0.99 

$`MAGEB1 WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2677 TCGA-A6-2683 TCGA-A6-3807 
       13.91        16.54        17.19        17.79        15.52        10.92 
TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 
        9.14         8.09         1.02         0.99         0.99         1.02 
TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        1.02         0.99         0.99         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 
        0.99         1.02         1.02         0.92         0.99         0.99 
TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3952 
        1.02         0.99         0.99         1.02         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A 
        1.02         0.99         1.02         0.99        13.94        18.02 
TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N 
       19.00        30.02        34.03        18.02        17.00         4.01 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 
       27.02        27.02        17.00        14.99        21.99        20.98 
TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
       15.02         0.99        13.02        12.00        12.00        13.02 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
       38.07         1.02        35.01         1.02        33.04        35.01 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H 
       26.01        20.98        39.06        51.95        39.95         2.01 
TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J 
        5.03         0.92        40.96        39.95        18.02        40.93 
TCGA-AY-4070 TCGA-AY-4071 
       16.31         0.95 

  MAGEB1 MUTATED MAGEB1 WILD-TYPE 
            0.99             0.92 
  MAGEB1 MUTATED MAGEB1 WILD-TYPE 
           18.02            51.95 
  MAGEB1 MUTATED MAGEB1 WILD-TYPE 
           14.37            11.46 
[1] "1.0 - 18.0 (14.4)" "0.9 - 52.0 (11.5)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE"   "MAGEB1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAGEB1 WILD-TYPE"   "MAGEB1 MUTATED" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE"   "MAGEB1 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE"   "MAGEB1 MUTATED" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "MAGEB1 MUTATED" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE"   "MAGEB1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAGEB1 WILD-TYPE"   "MAGEB1 MUTATED" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE"   "MAGEB1 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE"   "MAGEB1 MUTATED" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "MAGEB1 MUTATED" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE"   "MAGEB1 MUTATED" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"MAGEB1 WILD-TYPE"   "MAGEB1 MUTATED" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE"   "MAGEB1 MUTATED" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE"   "MAGEB1 MUTATED" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
  "MAGEB1 MUTATED" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" "MAGEB1 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D205V2, continuous
D205V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEB1 MUTATED      5    1
  MAGEB1 WILD-TYPE   72   77
        clus
vv       MAGEB1 MUTATED MAGEB1 WILD-TYPE
  FEMALE              5               72
  MALE                1               77
D205V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEB1 MUTATED      3    3
  MAGEB1 WILD-TYPE  125   21
                               clus
vv                              MAGEB1 MUTATED MAGEB1 WILD-TYPE
  COLON ADENOCARCINOMA                       3              125
  COLON MUCINOUS ADENOCARCINOMA              3               21
D205V5, multiclass
    clus
vv   MAGEB1 MUTATED MAGEB1 WILD-TYPE
  T1              0                4
  T2              1               32
  T3              3              100
  T4              1               13
D205V6, multiclass
    clus
vv   MAGEB1 MUTATED MAGEB1 WILD-TYPE
  N0              2               89
  N1              4               26
  N2              0               34
D205V7, multiclass
     clus
vv    MAGEB1 MUTATED MAGEB1 WILD-TYPE
  M0               6              124
  M1               0               21
  M1A              0                1
D205V8, multiclass
     clus
vv    MAGEB1 MUTATED MAGEB1 WILD-TYPE
  I                1               29
  II               1               56
  III              4               40
  IV               0               21

Clustering(206) Variable = SEC11C MUTATION ANALYSIS
D206V1, survival
                  sevent
clus2               0  1
  SEC11C MUTATED    2  0
  SEC11C WILD-TYPE 66 11
  SEC11C MUTATED SEC11C WILD-TYPE 
               2               77 
  SEC11C MUTATED SEC11C WILD-TYPE 
               0               11 
$`SEC11C MUTATED`
TCGA-AA-A00E TCGA-AA-A010 
       30.02        20.98 

$`SEC11C WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 
        0.99         0.99         0.99         1.02         1.02         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         0.99         1.02         0.99         0.99         1.02 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         0.99         1.02 
TCGA-AA-3986 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00F TCGA-AA-A00J 
        0.99        13.94        18.02        19.00        34.03        18.02 
TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R 
       18.02        17.00         4.01        27.02        27.02         0.99 
TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F 
       17.00        14.99        21.99        15.02         0.99        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R 
       12.00        12.00        13.02        38.07         1.02        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 
        1.02        33.04        35.01        26.01        20.98        39.06 
TCGA-AA-A029 TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W 
       51.95        39.95         2.01         5.03         0.92        40.96 
TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       39.95        18.02        40.93        16.31         0.95 

  SEC11C MUTATED SEC11C WILD-TYPE 
           20.98             0.92 
  SEC11C MUTATED SEC11C WILD-TYPE 
           30.02            51.95 
  SEC11C MUTATED SEC11C WILD-TYPE 
           25.50            10.92 
[1] "21.0 - 30.0 (25.5)" "0.9 - 52.0 (10.9)" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "SEC11C MUTATED" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SEC11C MUTATED" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "SEC11C MUTATED" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SEC11C MUTATED" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
  "SEC11C MUTATED" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
  "SEC11C MUTATED" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
[1] "Remove cluster labels:" "SEC11C MUTATED"        
clus
  SEC11C MUTATED SEC11C WILD-TYPE 
               2               77 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K       TCGA-AA-A00L 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q       TCGA-AA-A00R 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z       TCGA-AA-A017 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A01D       TCGA-AA-A01F       TCGA-AA-A01G       TCGA-AA-A01I 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A01K       TCGA-AA-A01P       TCGA-AA-A01Q       TCGA-AA-A01R 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A01S       TCGA-AA-A01T       TCGA-AA-A01V       TCGA-AA-A01X 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A01Z       TCGA-AA-A024       TCGA-AA-A029       TCGA-AA-A02F 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A02H       TCGA-AA-A02J       TCGA-AA-A02O       TCGA-AA-A02W 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AA-A02Y       TCGA-AA-A03F       TCGA-AA-A03J       TCGA-AY-4070 
"SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" "SEC11C WILD-TYPE" 
      TCGA-AY-4071 
"SEC11C WILD-TYPE" 
D206V2, continuous
D206V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SEC11C MUTATED      1    3
  SEC11C WILD-TYPE   76   75
        clus
vv       SEC11C MUTATED SEC11C WILD-TYPE
  FEMALE              1               76
  MALE                3               75
D206V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SEC11C MUTATED      4    0
  SEC11C WILD-TYPE  124   24
                               clus
vv                              SEC11C MUTATED SEC11C WILD-TYPE
  COLON ADENOCARCINOMA                       4              124
  COLON MUCINOUS ADENOCARCINOMA              0               24
D206V5, multiclass
    clus
vv   SEC11C MUTATED SEC11C WILD-TYPE
  T1              0                4
  T2              0               33
  T3              3              100
  T4              1               13
D206V6, multiclass
    clus
vv   SEC11C MUTATED SEC11C WILD-TYPE
  N0              3               88
  N1              1               29
  N2              0               34
D206V7, multiclass
     clus
vv    SEC11C MUTATED SEC11C WILD-TYPE
  M0               3              127
  M1               1               20
  M1A              0                1
D206V8, multiclass
     clus
vv    SEC11C MUTATED SEC11C WILD-TYPE
  I                0               30
  II               3               54
  III              0               44
  IV               1               20

Clustering(207) Variable = TUBA3C MUTATION ANALYSIS
D207V1, survival
                  sevent
clus2               0  1
  TUBA3C MUTATED    2  1
  TUBA3C WILD-TYPE 66 10
  TUBA3C MUTATED TUBA3C WILD-TYPE 
               3               76 
  TUBA3C MUTATED TUBA3C WILD-TYPE 
               1               10 
$`TUBA3C MUTATED`
TCGA-AA-3715 TCGA-AA-A00A TCGA-AA-A00N 
        0.99        18.02         4.01 

$`TUBA3C WILD-TYPE`
TCGA-A6-2670 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 
       13.91        16.54        17.19        14.70        17.79        14.37 
TCGA-A6-2683 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3810 TCGA-AA-3518 TCGA-AA-3526 
       15.52        10.92         9.14         8.09         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3710 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3811 TCGA-AA-3818 TCGA-AA-3837 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        0.99         0.99         1.02         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 
        0.99         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-3986 
        0.99         1.02         1.02         0.99         1.02         0.99 
TCGA-AA-A004 TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F TCGA-AA-A00J TCGA-AA-A00K 
       13.94        19.00        30.02        34.03        18.02        18.02 
TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W 
       17.00        27.02        27.02         0.99        17.00        14.99 
TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G 
       21.99        20.98        15.02         0.99        13.02        12.00 
TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S 
       12.00        13.02        38.07         1.02        35.01         1.02 
TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
       33.04        35.01        26.01        20.98        39.06        51.95 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02O TCGA-AA-A02W TCGA-AA-A02Y 
       39.95         2.01         5.03         0.92        40.96        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 
       18.02        40.93        16.31         0.95 

  TUBA3C MUTATED TUBA3C WILD-TYPE 
            0.99             0.92 
  TUBA3C MUTATED TUBA3C WILD-TYPE 
           18.02            51.95 
  TUBA3C MUTATED TUBA3C WILD-TYPE 
            4.01            12.00 
[1] "1.0 - 18.0 (4.0)"  "0.9 - 52.0 (12.0)"
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-A6-2670       TCGA-A6-2672       TCGA-A6-2674       TCGA-A6-2676 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-A6-2677       TCGA-A6-2678       TCGA-A6-2683       TCGA-A6-3807 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-A6-3808       TCGA-A6-3810       TCGA-AA-3518       TCGA-AA-3526 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-3555       TCGA-AA-3562       TCGA-AA-3666       TCGA-AA-3679 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-3685       TCGA-AA-3710       TCGA-AA-3715       TCGA-AA-3811 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" 
      TCGA-AA-3818       TCGA-AA-3837       TCGA-AA-3842       TCGA-AA-3844 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-3846       TCGA-AA-3848       TCGA-AA-3854       TCGA-AA-3877 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-3939       TCGA-AA-3941       TCGA-AA-3947       TCGA-AA-3949 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-3952       TCGA-AA-3966       TCGA-AA-3975       TCGA-AA-3977 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-3986       TCGA-AA-A004       TCGA-AA-A00A       TCGA-AA-A00D 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" 
      TCGA-AA-A00E       TCGA-AA-A00F       TCGA-AA-A00J       TCGA-AA-A00K 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A00L       TCGA-AA-A00N       TCGA-AA-A00O       TCGA-AA-A00Q 
"TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A00R       TCGA-AA-A00U       TCGA-AA-A00W       TCGA-AA-A00Z 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A010       TCGA-AA-A017       TCGA-AA-A01D       TCGA-AA-A01F 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A01G       TCGA-AA-A01I       TCGA-AA-A01K       TCGA-AA-A01P 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A01Q       TCGA-AA-A01R       TCGA-AA-A01S       TCGA-AA-A01T 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A01V       TCGA-AA-A01X       TCGA-AA-A01Z       TCGA-AA-A024 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A029       TCGA-AA-A02F       TCGA-AA-A02H       TCGA-AA-A02J 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A02O       TCGA-AA-A02W       TCGA-AA-A02Y       TCGA-AA-A03F 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-AA-A03J       TCGA-AY-4070       TCGA-AY-4071 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
[1] "hr=" "3.2"
D207V2, continuous
D207V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TUBA3C MUTATED      4    4
  TUBA3C WILD-TYPE   73   74
        clus
vv       TUBA3C MUTATED TUBA3C WILD-TYPE
  FEMALE              4               73
  MALE                4               74
D207V4, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TUBA3C MUTATED      6    1
  TUBA3C WILD-TYPE  122   23
                               clus
vv                              TUBA3C MUTATED TUBA3C WILD-TYPE
  COLON ADENOCARCINOMA                       6              122
  COLON MUCINOUS ADENOCARCINOMA              1               23
D207V5, multiclass
    clus
vv   TUBA3C MUTATED TUBA3C WILD-TYPE
  T1              0                4
  T2              0               33
  T3              6               97
  T4              2               12
D207V6, multiclass
    clus
vv   TUBA3C MUTATED TUBA3C WILD-TYPE
  N0              8               83
  N1              0               30
  N2              0               34
D207V7, multiclass
     clus
vv    TUBA3C MUTATED TUBA3C WILD-TYPE
  M0               8              122
  M1               0               21
  M1A              0                1
D207V8, multiclass
     clus
vv    TUBA3C MUTATED TUBA3C WILD-TYPE
  I                0               30
  II               8               49
  III              0               44
  IV               0               21
                 V1.D                    V2                    V3 
      "Time to Death"                 "AGE"              "GENDER" 
                   V4                    V5                    V6 
  "HISTOLOGICAL.TYPE"         "PATHOLOGY.T"         "PATHOLOGY.N" 
                   V7                    V8 
"PATHOLOGICSPREAD(M)"         "TUMOR.STAGE" 
> q(save="no")
