
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_TopgenesforCluster.35.3911/Topgenes_v1.R")
> result <- main("-s/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_TopgenesforCluster.35.3911/", "-m/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MethylationPreprocess/GBM-TP/2401531/0.GDAC_MethylationPreprocess.Finished/GBM-TP.meth.for_clustering.filtered_data.txt", "-u8016", "-ooutputprefix")
Cluster size 8016 broken into 3825 4191 
Cluster size 3825 broken into 2358 1467 
Cluster size 2358 broken into 1207 1151 
Done cluster 1207 
Done cluster 1151 
Done cluster 2358 
Done cluster 1467 
Done cluster 3825 
Cluster size 4191 broken into 1759 2432 
Cluster size 1759 broken into 847 912 
Done cluster 847 
Done cluster 912 
Done cluster 1759 
Cluster size 2432 broken into 1215 1217 
Done cluster 1215 
Done cluster 1217 
Done cluster 2432 
Done cluster 4191 
> q(save="no")
