
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvsarms_onlysig.11.3769/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvsarms_onlysig.11.3769/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/301890/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/HNSC-TP/2330197/1.GDAC_clinicalDataPicker.Finished/HNSC-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=HNSC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=HNSC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=315, in cluster file=322, common to both=309
[1] "Reduce the number of clustering variables from 80 to 79."
[1]  79 309
[1] "1p gain mutation analysis"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               11               298 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               11               298 
[1] "1q gain mutation analysis"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               39               270 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               39               270 
[1] "2p gain mutation analysis"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               30               279 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               30               279 
[1] "2q gain mutation analysis"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               20               289 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               20               289 
[1] "3p gain mutation analysis"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               27               282 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               27               282 
[1] "3q gain mutation analysis"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              102               207 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              102               207 
[1] "4p gain mutation analysis"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               13               296 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               13               296 
[1] "4q gain mutation analysis"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                9               300 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                9               300 
[1] "5p gain mutation analysis"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               77               232 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               77               232 
[1] "5q gain mutation analysis"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               27               282 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               27               282 
[1] "6p gain mutation analysis"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               26               283 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               26               283 
[1] "6q gain mutation analysis"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               19               290 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               19               290 
[1] "7p gain mutation analysis"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               70               239 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               70               239 
[1] "7q gain mutation analysis"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               44               265 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               44               265 
[1] "8p gain mutation analysis"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               48               261 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               48               261 
[1] "8q gain mutation analysis"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              124               185 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              124               185 
[1] "9p gain mutation analysis"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               37               272 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               37               272 
[1] "9q gain mutation analysis"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               44               265 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               44               265 
[1] "10p gain mutation analysis"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                12                297 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                12                297 
[1] "10q gain mutation analysis"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 6                303 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 6                303 
[1] "11p gain mutation analysis"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                16                293 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                16                293 
[1] "11q gain mutation analysis"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                16                293 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                16                293 
[1] "12p gain mutation analysis"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                60                249 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                60                249 
[1] "12q gain mutation analysis"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                25                284 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                25                284 
[1] "13q gain mutation analysis"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                17                292 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                17                292 
[1] "14q gain mutation analysis"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                51                258 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                51                258 
[1] "15q gain mutation analysis"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                13                296 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                13                296 
[1] "16p gain mutation analysis"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                20                289 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                20                289 
[1] "16q gain mutation analysis"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                26                283 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                26                283 
[1] "17p gain mutation analysis"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                18                291 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                18                291 
[1] "17q gain mutation analysis"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                20                289 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                20                289 
[1] "18p gain mutation analysis"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                50                259 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                50                259 
[1] "18q gain mutation analysis"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                20                289 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                20                289 
[1] "19p gain mutation analysis"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                11                298 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                11                298 
[1] "19q gain mutation analysis"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                21                288 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                21                288 
[1] "20p gain mutation analysis"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                64                245 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                64                245 
[1] "20q gain mutation analysis"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                69                240 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                69                240 
[1] "21q gain mutation analysis"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 9                300 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 9                300 
[1] "22q gain mutation analysis"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                38                271 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                38                271 
[1] "Xq gain mutation analysis"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               21               288 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               21               288 
[1] "1p loss mutation analysis"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               16               293 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               16               293 
[1] "2p loss mutation analysis"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                5               304 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                5               304 
[1] "2q loss mutation analysis"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                9               300 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                9               300 
[1] "3p loss mutation analysis"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              120               189 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              120               189 
[1] "3q loss mutation analysis"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               21               288 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               21               288 
[1] "4p loss mutation analysis"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               76               233 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               76               233 
[1] "4q loss mutation analysis"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               50               259 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               50               259 
[1] "5p loss mutation analysis"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               10               299 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               10               299 
[1] "5q loss mutation analysis"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               61               248 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               61               248 
[1] "6p loss mutation analysis"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               19               290 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               19               290 
[1] "6q loss mutation analysis"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               21               288 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               21               288 
[1] "7p loss mutation analysis"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                5               304 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                5               304 
[1] "7q loss mutation analysis"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                9               300 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                9               300 
[1] "8p loss mutation analysis"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               65               244 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               65               244 
[1] "8q loss mutation analysis"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                6               303 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                6               303 
[1] "9p loss mutation analysis"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               84               225 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               84               225 
[1] "9q loss mutation analysis"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               29               280 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               29               280 
[1] "10p loss mutation analysis"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                45                264 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                45                264 
[1] "10q loss mutation analysis"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                25                284 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                25                284 
[1] "11p loss mutation analysis"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                39                270 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                39                270 
[1] "11q loss mutation analysis"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                60                249 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                60                249 
[1] "12p loss mutation analysis"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                12                297 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                12                297 
[1] "12q loss mutation analysis"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 8                301 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 8                301 
[1] "13q loss mutation analysis"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                61                248 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                61                248 
[1] "14q loss mutation analysis"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                15                294 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                15                294 
[1] "15q loss mutation analysis"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                23                286 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                23                286 
[1] "16p loss mutation analysis"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                11                298 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                11                298 
[1] "16q loss mutation analysis"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                25                284 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                25                284 
[1] "17p loss mutation analysis"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                43                266 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                43                266 
[1] "17q loss mutation analysis"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 4                305 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 4                305 
[1] "18p loss mutation analysis"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                29                280 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                29                280 
[1] "18q loss mutation analysis"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                86                223 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                86                223 
[1] "19p loss mutation analysis"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                26                283 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                26                283 
[1] "19q loss mutation analysis"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                19                290 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                19                290 
[1] "20p loss mutation analysis"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                20                289 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                20                289 
[1] "20q loss mutation analysis"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 9                300 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 9                300 
[1] "21q loss mutation analysis"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                53                256 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                53                256 
[1] "22q loss mutation analysis"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                24                285 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                24                285 
[1] "Xq loss mutation analysis"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                8               301 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                8               301 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "HISTOLOGICALTYPE"                      
[11] "PATHOLOGICSPREAD(PT)"                  
[12] "PATHOLOGICSPREAD(PN)"                  
[13] "PATHOLOGICSPREAD(M)"                   
[14] "TUMORSTAGE"                            
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "NUMBERPACKYEARSSMOKED"                 
[17] "STOPPEDSMOKINGYEAR"                    
[18] "TOBACCOSMOKINGHISTORYINDICATOR"        
[19] "YEAROFTOBACCOSMOKINGONSET"             
[20] "BATCHNUMBER"                           

Input Data has 20 rows and 309 columns.

[1] "Batch" "20"   
[1] "Last Follow UP"
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
         461          283          415         1134          276          248 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
         190          845         1761          186          179          242 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
        1635         1747          152          244           NA           63 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
          NA          113          236          186         2891          275 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
         140          133          557          310          535          422 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 
         718          638         1152          427          436          192 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
         412          310          142          194          325          166 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
         343          383          522          369          395          240 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
         436          348          810          875          397          279 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
         289          173          377          866          252          493 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
         351          360          352          380           NA          413 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
         274          207          228          143          154          201 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
         159           45          134           97          276          201 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
         188          224           42          177           83          119 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
          NA          114          100           46         1465         1207 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
         654           NA         1183          841          896         1028 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
         317          341          128          870           NA         1000 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
        1057          984           NA           NA           NA          814 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
        1006          508          693         2562          358         1662 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
        1152          798         1777         1521           NA         1050 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
        1125           NA          514           NA          362          311 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
         345          354          233          379          350          479 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
          NA         1435         1190         1440         1244           NA 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
         104           NA          759          889           30          972 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
          NA         1036           NA          796           NA          997 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
        1430           NA          392          907          913          946 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
         908          898          929          216          156          180 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
        1077          910         1471         4115          522         3930 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
        3295         1438          584          546         2732         2663 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
        2326         2567         1969          519          406          540 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
        1736         1478         1007          215         1315         1246 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
         405          743          179           NA           NA           NA 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
        3835           NA           NA           NA           NA           NA 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
          NA           NA           NA           NA         3836         3380 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
          NA           NA           NA           NA           NA         3496 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
        1724           NA         1444         1095          953          797 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
          NA         1099           NA           NA           NA           NA 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
          NA         4334           NA           NA           NA          316 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
         321          236          828          403          325          250 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
         238           77          152          153          127         1149 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
        1058          516          477          548           NA          575 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
         661          360          299          369          368          324 
TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
          35           14           30            2            5           25 
TCGA-HD-7831 TCGA-HD-7832 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 
          NA           NA           31           55           44          692 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
         160          122          113 
Variable 1:'AGE':	nDistinctValues=56,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=116,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=204,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=21,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=94,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'PATHOLOGY.T':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.N':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGICSPREAD(M)':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'TUMOR.STAGE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'NUMBERPACKYEARSSMOKED':	nDistinctValues=70,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 17:'STOPPEDSMOKINGYEAR':	nDistinctValues=47,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'TOBACCOSMOKINGHISTORYINDICATOR':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=52,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'BATCH.NUMBER':	nDistinctValues=10,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "PATHOLOGY.T"                           
 [4] "PATHOLOGY.N"                           
 [5] "TUMOR.STAGE"                           
 [6] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [7] "NUMBERPACKYEARSSMOKED"                 
 [8] "STOPPEDSMOKINGYEAR"                    
 [9] "TOBACCOSMOKINGHISTORYINDICATOR"        
[10] "YEAROFTOBACCOSMOKINGONSET"             
[1] "TUMOR.?STAGE" "5"           
[1] "stage2"
vv
  1   2   3   4 
 18  47  42 154 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 309 columns, 1 survival variables, and 10 non-survival variables.
AGE, nv=56, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 25  77  63 101 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 25  77  63 101 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 25  77  63 101 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 25  77  63 101 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
102  32  98   5 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
102  32  98   5 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2  N3 
102  32  98   5 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
102  32  98   5 
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
 18  47  42 154 
[1] "table(vv)"
vv
  I  II III  IV 
 18  47  42 154 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 18  47  42 154 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 18  47  42 154 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=70, binary=FALSE, numeric=TRUE
STOPPEDSMOKINGYEAR, nv=47, binary=FALSE, numeric=TRUE
TOBACCOSMOKINGHISTORYINDICATOR, nv=4, binary=FALSE, numeric=FALSE
YEAROFTOBACCOSMOKINGONSET, nv=52, binary=FALSE, numeric=TRUE

Clustering(1) Variable = 1p gain mutation analysis
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN MUTATED     6   5
  1P GAIN WILD-TYPE 179 116
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               11               295 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                5               116 
$`1P GAIN MUTATED`
TCGA-BA-5555 TCGA-CN-4727 TCGA-CR-6482 TCGA-CV-5431 TCGA-CV-5442 TCGA-CV-5973 
        6.12         6.38        11.34        17.16        76.47        57.07 
TCGA-CV-6933 TCGA-CV-7255 TCGA-CV-7407 TCGA-CV-7422 TCGA-DQ-5625 
       90.08         2.10        35.54        34.09        34.78 

$`1P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        27.78        57.90         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 
       20.98        37.87        14.04        14.33         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
       10.19         4.67        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 
       13.25         4.21        14.96        26.76        33.07        16.70 
TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       22.78        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 
       16.90         6.02        11.90        10.22        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       87.55        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43         5.88         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 
       95.34         4.96        11.87        47.97        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       58.06        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7424 
       22.85        25.02        25.94         0.07       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       37.78        16.96        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        1.15         0.46         0.99         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.02         1.81         1.45        22.75         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             2.10              0.07 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            90.08            210.94 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            34.09             14.04 
[1] "2.1 - 90.1 (34.1)"  "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      6    5
  1P GAIN WILD-TYPE   78  220
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  FEMALE               6                78
  MALE                 5               220
D1V4, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  T1               0                25
  T2               1                76
  T3               4                59
  T4               4                97
D1V5, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  N0               3                99
  N1               2                30
  N2               3                95
  N3               0                 5
D1V6, multiclass
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  I                 0                18
  II                1                46
  III               2                40
  IV                6               148
D1V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      2    9
  1P GAIN WILD-TYPE   74  224
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO                2                74
  YES               9               224
D1V8, continuous
D1V9, continuous
D1V10, multiclass
                                             clus
vv                                            1P GAIN MUTATED 1P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                74
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    0                56
  CURRENT SMOKER                                            1                96
  LIFELONG NON-SMOKER                                       3                61
D1V11, continuous

Clustering(2) Variable = 1q gain mutation analysis
D2V1, survival
                   sevent
clus2                 0   1
  1Q GAIN MUTATED    22  17
  1Q GAIN WILD-TYPE 163 104
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               39               267 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               17               104 
$`1Q GAIN MUTATED`
TCGA-BA-5555 TCGA-BA-6870 TCGA-BA-6871 TCGA-BB-4227 TCGA-BB-7871 TCGA-CN-4727 
        6.12        14.79         2.07         4.37        14.04         6.38 
TCGA-CN-5367 TCGA-CN-5374 TCGA-CN-6013 TCGA-CN-6023 TCGA-CR-6482 TCGA-CR-7370 
       11.57         9.01         5.06         6.18        11.34         3.42 
TCGA-CR-7390 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-5442 
       29.82       135.29        17.16       108.33        89.82        76.47 
TCGA-CV-5979 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6951 TCGA-CV-6962 
       43.23        90.08         9.70         5.46        30.05         4.14 
TCGA-CV-7101 TCGA-CV-7178 TCGA-CV-7243 TCGA-CV-7250 TCGA-CV-7255 TCGA-CV-7407 
        5.23        71.21        31.33        95.34         2.10        35.54 
TCGA-CV-7409 TCGA-CV-7422 TCGA-CV-7437 TCGA-CX-7086 TCGA-D6-6827 TCGA-DQ-5625 
       17.82        34.09        16.60         7.76         4.18        34.78 
TCGA-DQ-5629 TCGA-HD-7754 TCGA-HL-7533 
       16.96         0.82        22.75 

$`1Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        27.78        57.90         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44         5.00         8.02        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 
        6.12        95.05         9.04         4.60        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7872 
       17.59        13.87        23.61        20.98        37.87        14.33 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 
        6.31        13.55        10.19         4.67        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 
       11.54        11.84        12.49         8.52        13.58         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        7.50         4.70         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        3.19         9.07         6.61         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 
       14.96        26.76        33.07        16.70        22.78        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       11.90        10.22        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
       35.84         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        12.89        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 
       48.36       129.21        47.28        19.20        17.95        87.55 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       48.59        33.11         7.07        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        5.88         2.14        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
       28.31         2.50        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
       12.66         7.99         9.01         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       21.76        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 
       36.00        26.20        18.97        17.10         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 
       47.97        36.13        18.41        58.06       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 
       16.27        84.49        19.73         7.13       142.49         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       21.99        10.39        10.55        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-DQ-5624 
        8.22         7.82         2.53         5.00         5.03        37.78 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.99         0.07         0.16         1.02         1.81         1.45 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             0.82              0.07 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           135.29            210.94 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            14.79             14.04 
[1] "0.8 - 135.3 (14.8)" "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D2V2, continuous
D2V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     12   27
  1Q GAIN WILD-TYPE   72  198
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  FEMALE              12                72
  MALE                27               198
D2V4, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  T1               1                24
  T2               7                70
  T3               6                57
  T4              18                83
D2V5, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  N0               5                97
  N1               4                28
  N2              18                80
  N3               1                 4
D2V6, multiclass
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  I                 1                17
  II                3                44
  III               3                39
  IV               25               129
D2V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     13   26
  1Q GAIN WILD-TYPE   63  207
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO               13                63
  YES              26               207
D2V8, continuous
D2V9, continuous
D2V10, multiclass
                                             clus
vv                                            1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              14                67
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    7                49
  CURRENT SMOKER                                           11                86
  LIFELONG NON-SMOKER                                       6                58
D2V11, continuous

Clustering(3) Variable = 2p gain mutation analysis
D3V1, survival
                   sevent
clus2                 0   1
  2P GAIN MUTATED    17  13
  2P GAIN WILD-TYPE 168 108
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               30               276 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               13               108 
$`2P GAIN MUTATED`
TCGA-BA-4075 TCGA-CN-4727 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CQ-5329 
        9.30         6.38         6.18         1.38         5.82        27.65 
TCGA-CR-5247 TCGA-CR-7383 TCGA-CR-7398 TCGA-CR-7399 TCGA-CV-5430 TCGA-CV-5440 
       11.77        17.13         5.13         5.92       135.29        89.82 
TCGA-CV-6933 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6962 TCGA-CV-7178 
       90.08        26.43        11.24        15.06         4.14        71.21 
TCGA-CV-7235 TCGA-CV-7243 TCGA-CV-7250 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7421 
       56.68        31.33        95.34        47.97        36.13         0.07 
TCGA-CV-7423 TCGA-CV-7437 TCGA-CX-7086 TCGA-D6-6516 TCGA-DQ-7589 TCGA-DQ-7592 
      100.54        16.60         7.76        10.68        18.90         9.83 

$`2P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 
       20.98        37.87        14.04        14.33         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
       10.19         4.67        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6992 
        4.41         3.19         9.07         6.61         7.36         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 
       39.68        21.50         2.93        38.89        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 
       33.07        16.70        22.78        84.23        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       19.92        26.17        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 
        7.10        35.41        29.92        48.36        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 
      108.33        47.28        19.20        17.95        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43         5.88         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
        4.70        21.86       126.08        19.79        12.03        42.35 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
        8.38        28.31         2.50        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 
       52.31        12.89        21.76        10.75       114.94         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 
       47.47        36.00        26.20        18.97        17.10         4.96 
TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
       11.87         2.10        18.41        58.06        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       25.94        34.09        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 
        6.38        21.99        10.39        10.55        27.22        13.25 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       37.78        34.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       21.73        11.84        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        0.46         0.99         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.81         1.45        22.75         5.26         4.01         3.72 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             0.07              0.07 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           135.29            210.94 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
            15.83             14.04 
[1] "0.1 - 135.3 (15.8)" "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      6   24
  2P GAIN WILD-TYPE   78  201
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  FEMALE               6                78
  MALE                24               201
D3V4, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  T1               2                23
  T2               8                69
  T3               8                55
  T4               9                92
D3V5, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  N0              11                91
  N1               4                28
  N2               8                90
  N3               0                 5
D3V6, multiclass
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  I                 2                16
  II                6                41
  III               6                36
  IV               13               141
D3V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      6   24
  2P GAIN WILD-TYPE   70  209
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO                6                70
  YES              24               209
D3V8, continuous
D3V9, continuous
D3V10, multiclass
                                             clus
vv                                            2P GAIN MUTATED 2P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                74
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    8                48
  CURRENT SMOKER                                           11                86
  LIFELONG NON-SMOKER                                       2                62
D3V11, continuous

Clustering(4) Variable = 2q gain mutation analysis
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN MUTATED     9  11
  2Q GAIN WILD-TYPE 176 110
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               20               286 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               11               110 
$`2Q GAIN MUTATED`
TCGA-BA-4075 TCGA-CN-4727 TCGA-CQ-5329 TCGA-CQ-6228 TCGA-CR-5247 TCGA-CR-7383 
        9.30         6.38        27.65        14.96        11.77        17.13 
TCGA-CV-5430 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-6940 TCGA-CV-6950 TCGA-CV-6962 
      135.29       108.33        89.82        26.43        15.06         4.14 
TCGA-CV-7235 TCGA-CV-7250 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7421 TCGA-CV-7423 
       56.68        95.34        47.97        36.13         0.07       100.54 
TCGA-CX-7086 TCGA-DQ-7592 
        7.76         9.83 

$`2Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 
       20.98        37.87        14.04        14.33         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
       10.19         4.67        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       38.89        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 
        4.21        26.76        33.07        16.70        22.78        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 
       31.96        34.06        19.92        26.17        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 
       29.92        48.36        17.16       129.21        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       17.95        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        13.32        24.43         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 
       11.24       126.08        19.79        12.03        42.35        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
       28.31         2.50        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 
       12.89        21.76        71.21        10.75       114.94         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
        4.96        11.87         2.10        18.41        58.06        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
       25.02        25.94        34.09        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        5.00         5.03         4.18        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 
       12.13        12.10        10.65         1.15         0.46         0.99 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
       22.75         5.26         4.01         3.72 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             0.07              0.07 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           135.29            210.94 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           21.780            13.755 
[1] "0.1 - 135.3 (21.8)" "0.1 - 210.9 (13.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      4   16
  2Q GAIN WILD-TYPE   80  209
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  FEMALE               4                80
  MALE                16               209
D4V4, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  T1               2                23
  T2               5                72
  T3               3                60
  T4               8                93
D4V5, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  N0               8                94
  N1               2                30
  N2               5                93
  N3               0                 5
D4V6, multiclass
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  I                 1                17
  II                4                43
  III               3                39
  IV               10               144
D4V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      5   15
  2Q GAIN WILD-TYPE   71  218
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO                5                71
  YES              15               218
D4V8, continuous
D4V9, continuous
D4V10, multiclass
                                             clus
vv                                            2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3                78
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    7                49
  CURRENT SMOKER                                            8                89
  LIFELONG NON-SMOKER                                       1                63
D4V11, continuous

Clustering(5) Variable = 3p gain mutation analysis
D5V1, survival
                   sevent
clus2                 0   1
  3P GAIN MUTATED    19   8
  3P GAIN WILD-TYPE 166 113
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               27               279 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                8               113 
$`3P GAIN MUTATED`
TCGA-BA-4077 TCGA-BA-5153 TCGA-BA-5559 TCGA-BB-4223 TCGA-BB-4225 TCGA-CN-4723 
       37.28        57.90        57.44        95.05         4.60        13.55 
TCGA-CN-4731 TCGA-CN-6010 TCGA-CN-6013 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6988 
       12.59         6.81         5.06         9.07         6.18         1.38 
TCGA-CQ-5323 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6474 
       48.16        34.75        13.25        58.42        50.01        18.51 
TCGA-CR-6487 TCGA-CR-7368 TCGA-CV-5442 TCGA-CV-5977 TCGA-CV-6433 TCGA-CV-7178 
        7.66        40.90        76.47        33.11        13.32        71.21 
TCGA-CV-7409 TCGA-CV-7437 TCGA-HD-8314 
       17.82        16.60         1.45 

$`3P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        13.64         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 
       27.78         6.12         5.88         7.96        53.75         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        8.02        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        6.12         9.04         4.37        18.31        10.19        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       13.87        23.61        20.98        37.87        14.04        14.33 
TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
        6.31        10.19         4.67         6.38        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       11.28        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        7.50         4.70         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        3.19         6.61         7.36         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5324 TCGA-CQ-5325 
        3.68         3.75         3.29         1.51        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6224 
       11.21         4.21        28.60        32.35        32.88        32.35 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
        4.21        14.96        26.76        33.07        16.70        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6471 
       84.23        11.77        54.64        37.87        26.24        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       34.52        36.99        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.34        11.64        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       47.18        39.12        47.34        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       17.95        89.82        87.55        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 
       13.35        17.75        57.07        48.59         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       40.96        24.43         5.88        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       52.31        12.89        21.76        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 
       36.13        18.41        58.06        35.54       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        5.03         4.18        37.78        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       18.02        14.04        18.90        21.73        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 
       12.13        12.10        10.65         1.15         0.46         0.99 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HL-7533 
        0.07         0.16         0.82         1.02         1.81        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             1.38              0.07 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            95.05            210.94 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            17.82             14.04 
[1] "1.4 - 95.0 (17.8)"  "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      5   22
  3P GAIN WILD-TYPE   79  203
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  FEMALE               5                79
  MALE                22               203
D5V4, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  T1               2                23
  T2               8                69
  T3               3                60
  T4              10                91
D5V5, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  N0               8                94
  N1               2                30
  N2              10                88
  N3               1                 4
D5V6, multiclass
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  I                 2                16
  II                4                43
  III               2                40
  IV               14               140
D5V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      8   19
  3P GAIN WILD-TYPE   68  214
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO                8                68
  YES              19               214
D5V8, continuous
D5V9, continuous
D5V10, multiclass
                                             clus
vv                                            3P GAIN MUTATED 3P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              11                70
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    5                51
  CURRENT SMOKER                                            3                94
  LIFELONG NON-SMOKER                                       8                56
D5V11, continuous

Clustering(6) Variable = 3q gain mutation analysis
D6V1, survival
                   sevent
clus2                 0   1
  3Q GAIN MUTATED    66  36
  3Q GAIN WILD-TYPE 119  85
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              102               204 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               36                85 
$`3Q GAIN MUTATED`
TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5557 
       37.28         9.07         8.15         6.25        57.90         7.96 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4223 
       57.44         5.00        14.79        12.99         7.76        95.05 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-7864 TCGA-BB-7872 TCGA-CN-4723 TCGA-CN-4726 
        4.60         4.37        23.61        14.33        13.55         4.67 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-4739 
       10.68         5.46        11.28        12.59         7.89        11.44 
TCGA-CN-4741 TCGA-CN-5356 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5367 TCGA-CN-5373 
       28.77         9.50        12.39        28.47        11.57        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6019 TCGA-CN-6020 
        9.01         6.81         4.70         5.06         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6998 
        9.07         6.18         1.38         5.82         3.91         1.51 
TCGA-CQ-5323 TCGA-CQ-5329 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6228 
       48.16        27.65        32.35        34.75        13.25        14.96 
TCGA-CR-5243 TCGA-CR-5249 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6474 TCGA-CR-6480 
       84.23        37.87        58.42        50.01        18.51        11.90 
TCGA-CR-6487 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7385 TCGA-CR-7389 
        7.66        39.12        40.90        35.84        32.78        12.89 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5442 
       29.92        48.36       135.29        19.20        89.82        76.47 
TCGA-CV-5444 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6933 
       64.73        57.07        33.11        40.96        13.32        90.08 
TCGA-CV-6935 TCGA-CV-6940 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6954 TCGA-CV-7101 
        9.70        26.43        42.35        30.05        65.82         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7178 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 
        1.84        52.31        71.21        31.33        26.20        17.10 
TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7414 
       95.34        11.87        18.41        58.06        17.82         0.46 
TCGA-CV-7421 TCGA-CV-7424 TCGA-CV-7434 TCGA-CV-7437 TCGA-DQ-5624 TCGA-DQ-7592 
        0.07        14.86         7.13        16.60        37.78         9.83 
TCGA-DQ-7595 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 
       10.65         0.82         1.02         1.81         1.45        22.75 

$`3Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 
       15.16         9.30        13.64        27.78         6.12         5.88 
TCGA-BA-5558 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4224 
       53.75         8.02         2.07         3.72         6.12         9.04 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7870 
       18.31        10.19        17.59        13.87        20.98        37.87 
TCGA-BB-7871 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4727 TCGA-CN-4733 TCGA-CN-4735 
       14.04         6.31        10.19         6.38        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 
       12.99        14.33        26.63        13.05         9.17         5.69 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 
        8.28        16.21        11.54        11.84        12.49         8.52 
TCGA-CN-6011 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6022 TCGA-CN-6024 
        7.50         6.61         5.23         1.48         6.61         7.36 
TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CQ-5324 TCGA-CQ-5325 
        2.73         3.68         3.75         3.29        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
        2.93        38.89        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 
        4.21        28.60        32.88        32.35         4.21        26.76 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5250 
       33.07        16.70        22.78        11.77        54.64        26.24 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6481 
       39.52        34.52        36.99        16.90         6.02        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.34        11.64        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       47.18        47.34         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.02        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5441 
       17.16       129.21       108.33        47.28        17.95        87.55 
TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5978 
       84.39        17.06        13.35        17.75        48.59         7.07 
TCGA-CV-5979 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 
       43.23        24.43         5.88         2.14         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        4.70        21.86        11.24       126.08        19.79        12.03 
TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
       15.06         6.08        53.92        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7104 TCGA-CV-7177 
       18.81        12.66         7.99         9.01        12.89        21.76 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7247 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7407 
       18.97         4.96        47.97         2.10        36.13        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
      210.94        89.33         9.67        22.85        25.02        25.94 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
       34.09       100.54        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 
       16.27        84.49        19.73       142.49         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       34.78        16.96        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-F7-7848 TCGA-F7-8298 
       21.73        11.84        12.13        12.10         1.15         0.46 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99         0.07         0.16         5.26         4.01         3.72 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             0.07              0.07 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           135.29            210.94 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           13.955            14.185 
[1] "0.1 - 135.3 (14.0)" "0.1 - 210.9 (14.2)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     21   81
  3Q GAIN WILD-TYPE   63  144
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  FEMALE              21                63
  MALE                81               144
D6V4, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  T1               7                18
  T2              25                52
  T3              18                45
  T4              35                66
D6V5, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  N0              28                74
  N1              13                19
  N2              36                62
  N3               2                 3
D6V6, multiclass
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  I                 4                14
  II               10                37
  III              13                29
  IV               56                98
D6V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     36   66
  3Q GAIN WILD-TYPE   40  167
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO               36                40
  YES              66               167
D6V8, continuous
D6V9, continuous
D6V10, multiclass
                                             clus
vv                                            3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              28                53
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   17                39
  CURRENT SMOKER                                           32                65
  LIFELONG NON-SMOKER                                      22                42
D6V11, continuous

Clustering(7) Variable = 4p gain mutation analysis
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN MUTATED     9   4
  4P GAIN WILD-TYPE 176 117
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               13               293 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                4               117 
$`4P GAIN MUTATED`
TCGA-BA-6872 TCGA-BB-4225 TCGA-CN-4727 TCGA-CN-4737 TCGA-CQ-6224 TCGA-CV-5973 
       12.99         4.60         6.38         7.89        32.35        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-6954 TCGA-CV-7102 TCGA-CV-7255 TCGA-DQ-5625 
       48.59        33.11        65.82         1.84         2.10        34.78 
TCGA-DQ-7592 
        9.83 

$`4P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 
        3.72         7.76         6.12        95.05         9.04         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        23.61        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       37.87        14.04        14.33         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        4.67        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.13        12.99        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.35        32.88        34.75        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 
       26.76        33.07        16.70        22.78        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        40.96        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 
       42.35        15.06        30.05         6.08        53.92        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        5.23        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
       47.97        36.13        18.41        58.06        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        7.82         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
       11.84        12.13        12.10        10.65         1.15         0.46 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        0.99         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.45        22.75         5.26         4.01         3.72 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             1.84              0.07 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            65.82            210.94 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            12.99             14.33 
[1] "1.8 - 65.8 (13.0)"  "0.1 - 210.9 (14.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      4    9
  4P GAIN WILD-TYPE   80  216
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  FEMALE               4                80
  MALE                 9               216
D7V4, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  T1               0                25
  T2               2                75
  T3               3                60
  T4               4                97
D7V5, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  N0               3                99
  N1               0                32
  N2               5                93
  N3               0                 5
D7V6, multiclass
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  I                 0                18
  II                0                47
  III               1                41
  IV                8               146
D7V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      5    8
  4P GAIN WILD-TYPE   71  225
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO                5                71
  YES               8               225
D7V8, continuous
D7V9, continuous
D7V10, multiclass
                                             clus
vv                                            4P GAIN MUTATED 4P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                76
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                54
  CURRENT SMOKER                                            3                94
  LIFELONG NON-SMOKER                                       3                61
D7V11, continuous

Clustering(8) Variable = 4q gain mutation analysis
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN MUTATED     5   4
  4Q GAIN WILD-TYPE 180 117
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                9               297 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                4               117 
$`4Q GAIN MUTATED`
TCGA-BA-6872 TCGA-BB-4225 TCGA-CN-4727 TCGA-CV-5436 TCGA-CV-5977 TCGA-CV-7102 
       12.99         4.60         6.38        19.20        33.11         1.84 
TCGA-CV-7245 TCGA-CV-7415 TCGA-DQ-5625 
       26.20        22.85        34.78 

$`4Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 
        3.72         7.76         6.12        95.05         9.04         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        23.61        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       37.87        14.04        14.33         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        4.67        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
        4.21        14.96        26.76        33.07        16.70        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5440 
       17.16       129.21       108.33        47.28        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       17.75        57.07        48.59         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       13.32        24.43         5.88        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 
       18.81        12.66         7.99         9.01         5.23        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 
        4.73        47.47        36.00        31.33        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        58.06        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        5.03         4.18        37.78        16.96        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       14.04        18.90        21.73        11.84         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 
       12.10        10.65         1.15         0.46         0.99         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 
        0.16         0.82         1.02         1.81         1.45        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             1.84              0.07 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            34.78            210.94 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            19.20             14.04 
[1] "1.8 - 34.8 (19.2)"  "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      2    7
  4Q GAIN WILD-TYPE   82  218
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  FEMALE               2                82
  MALE                 7               218
D8V4, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  T1               0                25
  T2               0                77
  T3               3                60
  T4               3                98
D8V5, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  N0               2               100
  N1               0                32
  N2               4                94
  N3               0                 5
D8V6, multiclass
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  I                 0                18
  II                0                47
  III               0                42
  IV                6               148
D8V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      2    7
  4Q GAIN WILD-TYPE   74  226
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO                2                74
  YES               7               226
D8V8, continuous
D8V9, continuous
D8V10, multiclass
                                             clus
vv                                            4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                77
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                55
  CURRENT SMOKER                                            3                94
  LIFELONG NON-SMOKER                                       0                64
D8V11, continuous

Clustering(9) Variable = 5p gain mutation analysis
D9V1, survival
                   sevent
clus2                 0   1
  5P GAIN MUTATED    47  28
  5P GAIN WILD-TYPE 138  93
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               75               231 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               28                93 
$`5P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 
        9.30         6.12        53.75        57.44         5.00         8.02 
TCGA-BA-6870 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4223 TCGA-BB-4227 TCGA-BB-4228 
       14.79         3.72         7.76        95.05         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7864 TCGA-CN-4723 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 
       10.19        23.61        13.55         6.38         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-5366 TCGA-CN-6011 
       12.59        12.99        14.33        11.44        11.84         7.50 
TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6994 TCGA-CN-6997 TCGA-CQ-5330 TCGA-CQ-6221 
        6.18         1.38         3.91         3.29        29.46        32.88 
TCGA-CQ-6224 TCGA-CQ-7067 TCGA-CR-5243 TCGA-CR-6467 TCGA-CR-6471 TCGA-CR-6473 
       32.35        16.70        84.23        58.42        39.52        36.99 
TCGA-CR-7389 TCGA-CR-7392 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7404 TCGA-CV-5435 
       12.89        31.10         5.13         5.92        48.36        47.28 
TCGA-CV-5439 TCGA-CV-5442 TCGA-CV-5970 TCGA-CV-5979 TCGA-CV-6441 TCGA-CV-6936 
       17.95        76.47        13.35        43.23         5.88         5.46 
TCGA-CV-6937 TCGA-CV-6941 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 
       20.52        11.24        65.82         7.13         8.38         2.50 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7178 
      111.12        18.81         1.84        52.31        12.89        71.21 
TCGA-CV-7180 TCGA-CV-7245 TCGA-CV-7409 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7437 
       10.75        26.20        17.82        25.02         0.07        16.60 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7590 TCGA-DQ-7592 TCGA-HD-7753 
       16.96        15.68        18.02        21.73         9.83         0.16 
TCGA-HD-7917 TCGA-HD-8224 TCGA-IQ-7630 
        1.02         1.81         5.26 

$`5P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-6871 TCGA-BA-6872 
       27.78        57.90         5.88         7.96         2.07        12.99 
TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 
        6.12         9.04         4.60        17.59        13.87        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 
       37.87        14.04        14.33         6.31        10.19         4.67 
TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-4740 TCGA-CN-4741 
       10.68        17.16        12.13         7.89        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
        8.28        16.21        11.54        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
       13.58         9.01         6.81         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 
        7.36         5.82         2.73         3.68         3.75         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       33.80        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 
       34.75        13.25         4.21        14.96        26.76        33.07 
TCGA-CQ-7068 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 
       22.78        11.77        54.64        37.87        26.24        50.01 
TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       34.52        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       27.02        29.82        30.02        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
        7.10        35.41        29.92       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 
      108.33        19.20        89.82        87.55        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       17.06        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       40.96        13.32        24.43        90.08         2.14         9.70 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        4.70        21.86        26.43       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 
       42.35        15.06        30.05         6.08        53.92        10.98 
TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7097 TCGA-CV-7099 
       28.31         4.14        64.80       126.12        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
        9.01         5.23        21.76       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       47.47        36.00        31.33        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       58.06        35.54       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       22.85        25.94        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
        7.13       142.49         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 
        2.53         5.00         5.03         4.18        37.78        34.78 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       14.04        18.90        11.84        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-8314 
        1.15         0.46         0.99         0.07         0.82         1.45 
TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 
       22.75         4.01         3.72 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.07              0.07 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           111.12            210.94 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
            12.99             14.96 
[1] "0.1 - 111.1 (13.0)" "0.1 - 210.9 (15.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     15   62
  5P GAIN WILD-TYPE   69  163
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  FEMALE              15                69
  MALE                62               163
D9V4, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  T1               5                20
  T2              19                58
  T3              16                47
  T4              24                77
D9V5, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  N0              22                80
  N1               7                25
  N2              26                72
  N3               1                 4
D9V6, multiclass
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  I                 3                15
  II                8                39
  III              11                31
  IV               40               114
D9V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     23   54
  5P GAIN WILD-TYPE   53  179
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO               23                53
  YES              54               179
D9V8, continuous
D9V9, continuous
D9V10, multiclass
                                             clus
vv                                            5P GAIN MUTATED 5P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              24                57
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   15                41
  CURRENT SMOKER                                           22                75
  LIFELONG NON-SMOKER                                      14                50
D9V11, continuous

Clustering(10) Variable = 5q gain mutation analysis
D10V1, survival
                   sevent
clus2                 0   1
  5Q GAIN MUTATED    16   9
  5Q GAIN WILD-TYPE 169 112
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               25               281 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                9               112 
$`5Q GAIN MUTATED`
TCGA-BA-6869 TCGA-BA-6870 TCGA-BB-4223 TCGA-BB-7861 TCGA-BB-7864 TCGA-CN-4738 
        8.02        14.79        95.05        10.19        23.61        14.33 
TCGA-CN-6011 TCGA-CN-6023 TCGA-CQ-6224 TCGA-CQ-7067 TCGA-CR-5243 TCGA-CR-6471 
        7.50         6.18        32.35        16.70        84.23        39.52 
TCGA-CR-6473 TCGA-CR-7389 TCGA-CV-5442 TCGA-CV-6936 TCGA-CV-6954 TCGA-CV-6956 
       36.99        12.89        76.47         5.46        65.82         7.13 
TCGA-CV-7102 TCGA-CV-7178 TCGA-CV-7245 TCGA-CV-7416 TCGA-DQ-5629 TCGA-DQ-5630 
        1.84        71.21        26.20        25.02        16.96        15.68 
TCGA-DQ-7590 
       21.73 

$`5Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       53.75        57.44         5.00         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        7.76         6.12         9.04         4.60         4.37        18.31 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       17.59        13.87        20.98        37.87        14.04        14.33 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
        7.89        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        9.01         6.81         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 
        1.48         4.41         3.19         9.07         6.61         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 
        4.21        28.60        32.35        32.88        34.75        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5247 
        4.21        14.96        26.76        33.07        22.78        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6472 
       54.64        37.87        26.24        58.42        50.01        34.52 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       17.95        89.82        87.55        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        13.32        24.43         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        2.14         9.70        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 
       30.05         6.08        53.92        10.98         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 
       12.66         7.99         9.01         5.23        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       21.76        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        31.33        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       11.87        47.97         2.10        36.13        18.41        58.06 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       22.85        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 
       37.78        34.78        18.02        14.04        18.90        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        0.99         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.45        22.75         5.26         4.01         3.72 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             1.84              0.07 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            95.05            210.94 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            16.96             13.58 
[1] "1.8 - 95.0 (17.0)"  "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      6   21
  5Q GAIN WILD-TYPE   78  204
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  FEMALE               6                78
  MALE                21               204
D10V4, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  T1               2                23
  T2               4                73
  T3               4                59
  T4              10                91
D10V5, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  N0               6                96
  N1               3                29
  N2               9                89
  N3               0                 5
D10V6, multiclass
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  I                 1                17
  II                0                47
  III               3                39
  IV               16               138
D10V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      9   18
  5Q GAIN WILD-TYPE   67  215
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO                9                67
  YES              18               215
D10V8, continuous
D10V9, continuous
D10V10, multiclass
                                             clus
vv                                            5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                74
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    6                50
  CURRENT SMOKER                                            9                88
  LIFELONG NON-SMOKER                                       4                60
D10V11, continuous

Clustering(11) Variable = 6p gain mutation analysis
D11V1, survival
                   sevent
clus2                 0   1
  6P GAIN MUTATED    17   9
  6P GAIN WILD-TYPE 168 112
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               26               280 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                9               112 
$`6P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BB-4224 TCGA-CN-4723 TCGA-CN-5356 TCGA-CN-5363 
        9.30         6.12         9.04        13.55         9.50         8.28 
TCGA-CN-6989 TCGA-CQ-5329 TCGA-CQ-5334 TCGA-CQ-7067 TCGA-CR-5247 TCGA-CR-7368 
        5.82        27.65         4.21        16.70        11.77        40.90 
TCGA-CR-7389 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5442 TCGA-CV-6003 TCGA-CV-6933 
       12.89        29.92       135.29        76.47        40.96        90.08 
TCGA-CV-6954 TCGA-CV-6959 TCGA-CV-7243 TCGA-CV-7255 TCGA-CV-7407 TCGA-CV-7415 
       65.82         8.38        31.33         2.10        35.54        22.85 
TCGA-DQ-5625 TCGA-HD-7917 
       34.78         1.02 

$`6P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       27.78        57.90         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        5.00         8.02        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        7.76         6.12        95.05         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        23.61        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       14.04        14.33         6.31        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 
       13.05         9.17         5.69        12.39        28.47        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        6.18         7.36         1.38         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
        2.93        38.89        29.46        33.80        10.42        11.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 
        4.21        14.96        26.76        33.07        22.78        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 
       15.75         9.27        47.18        39.12        47.34        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 
       30.54         7.10         5.13         5.92        35.41        48.36 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       89.82        87.55        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       13.32        24.43         5.88         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       53.92        10.98         7.13        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 
       11.87        47.97        36.13        18.41        58.06        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 
      210.94        89.33         9.67         0.46        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5629 
        2.53         5.00         5.03         4.18        37.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 
        0.99         0.07         0.16         0.82         1.81         1.45 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
       22.75         5.26         4.01         3.72 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             1.02              0.07 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           135.29            210.94 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           15.125            14.185 
[1] "1.0 - 135.3 (15.1)" "0.1 - 210.9 (14.2)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      7   19
  6P GAIN WILD-TYPE   77  206
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  FEMALE               7                77
  MALE                19               206
D11V4, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  T1               1                24
  T2               6                71
  T3               7                56
  T4               8                93
D11V5, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  N0               8                94
  N1               4                28
  N2               7                91
  N3               1                 4
D11V6, multiclass
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  I                 1                17
  II                3                44
  III               6                36
  IV               12               142
D11V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      2   24
  6P GAIN WILD-TYPE   74  209
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO                2                74
  YES              24               209
D11V8, continuous
D11V9, continuous
D11V10, multiclass
                                             clus
vv                                            6P GAIN MUTATED 6P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                76
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                53
  CURRENT SMOKER                                            9                88
  LIFELONG NON-SMOKER                                       6                58
D11V11, continuous

Clustering(12) Variable = 6q gain mutation analysis
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN MUTATED    10   9
  6Q GAIN WILD-TYPE 175 112
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               19               287 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                9               112 
$`6Q GAIN MUTATED`
TCGA-BA-4075 TCGA-CN-4723 TCGA-CN-5356 TCGA-CN-5363 TCGA-CQ-5334 TCGA-CQ-7067 
        9.30        13.55         9.50         8.28         4.21        16.70 
TCGA-CR-5247 TCGA-CV-5430 TCGA-CV-5442 TCGA-CV-5973 TCGA-CV-6003 TCGA-CV-6933 
       11.77       135.29        76.47        57.07        40.96        90.08 
TCGA-CV-6959 TCGA-CV-6962 TCGA-CV-7255 TCGA-CV-7415 TCGA-CV-7434 TCGA-DQ-5625 
        8.38         4.14         2.10        22.85         7.13        34.78 
TCGA-HD-7917 
        1.02 

$`6Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4725 
       20.98        37.87        14.04        14.33         6.31        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 
       26.63        28.77        13.05         9.17         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       28.47        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-6218 TCGA-CQ-6220 
       29.46        33.80        10.42        11.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 
       26.76        33.07        22.78        84.23        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
       48.36        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       17.95        89.82        87.55        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       13.35        17.75        48.59        33.11         7.07        43.23 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       13.32        24.43         5.88         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-6961 
       53.92        65.82        10.98         7.13        28.31         2.50 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       36.00        31.33        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
        4.96        11.87        47.97        36.13        18.41        58.06 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.02        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
       19.73       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        7.82         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       11.84         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8224 
        0.46         0.99         0.07         0.16         0.82         1.81 
TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.45        22.75         5.26         4.01         3.72 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             1.02              0.07 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
           135.29            210.94 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            11.77             14.33 
[1] "1.0 - 135.3 (11.8)" "0.1 - 210.9 (14.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      6   13
  6Q GAIN WILD-TYPE   78  212
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  FEMALE               6                78
  MALE                13               212
D12V4, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  T1               1                24
  T2               2                75
  T3               6                57
  T4               8                93
D12V5, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  N0               8                94
  N1               3                29
  N2               4                94
  N3               1                 4
D12V6, multiclass
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  I                 1                17
  II                1                46
  III               6                36
  IV                9               145
D12V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      1   18
  6Q GAIN WILD-TYPE   75  215
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO                1                75
  YES              18               215
D12V8, continuous
D12V9, continuous
D12V10, multiclass
                                             clus
vv                                            6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                76
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                54
  CURRENT SMOKER                                            6                91
  LIFELONG NON-SMOKER                                       4                60
D12V11, continuous

Clustering(13) Variable = 7p gain mutation analysis
D13V1, survival
                   sevent
clus2                 0   1
  7P GAIN MUTATED    43  27
  7P GAIN WILD-TYPE 142  94
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               70               236 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               27                94 
$`7P GAIN MUTATED`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-5555 TCGA-BB-7863 
       15.16         9.30        13.64         8.15         6.12        13.87 
TCGA-CN-4722 TCGA-CN-4730 TCGA-CN-4737 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
        6.31        11.28         7.89         7.50         4.70         5.06 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CQ-5329 TCGA-CQ-6225 
        6.18         7.36         1.38         5.82        27.65        13.25 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-7364 TCGA-CR-7365 
       16.70        22.78        18.51        16.90        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7390 TCGA-CR-7398 TCGA-CV-5431 
       47.34        19.92        26.17        29.82         5.13        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-6933 
      129.21       108.33        89.82        76.47        64.73        90.08 
TCGA-CV-6936 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6962 
        5.46        15.06        30.05        53.92        65.82         4.14 
TCGA-CV-7090 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7235 TCGA-CV-7243 
      126.12         5.23        21.76        71.21        56.68        31.33 
TCGA-CV-7247 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7409 TCGA-CV-7416 
       18.97        47.97         2.10        36.13        17.82        25.02 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7437 TCGA-CV-7440 TCGA-CX-7086 TCGA-CX-7219 
      100.54        14.86        16.60        21.99         7.76        27.22 
TCGA-D6-6516 TCGA-D6-6827 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-7589 TCGA-F7-8298 
       10.68         4.18        34.78        16.96        18.90         0.46 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7917 TCGA-IQ-7631 
        0.07         0.16         1.02         4.01 

$`7P GAIN WILD-TYPE`
TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 
       37.28         9.07         6.25        27.78        57.90         5.88 
TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 
        7.96        53.75        57.44         5.00         8.02        14.79 
TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 
        2.07        12.99         3.72         7.76         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        9.04         4.60         4.37        18.31        10.19        17.59 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4723 
       23.61        20.98        37.87        14.04        14.33        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4731 
       10.19         4.67         6.38        10.68         5.46        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       17.16        12.13        12.99        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6016 
       12.49         8.52        13.58         9.01         6.81         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 
       48.16        39.68        21.50         2.93        38.89        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       33.80        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       32.88        34.75        32.35         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       33.07        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6478 
       58.42        50.01        39.52        34.52        36.99         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       11.51        15.75         9.27        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 
       17.13        32.78        47.01        27.02        12.89        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 
       31.10        29.85        29.52        30.54         7.10         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5435 TCGA-CV-5436 
       35.41        29.92        48.36       135.29        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       17.95        87.55        84.39        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       57.07        48.59        33.11         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 
       13.32        24.43         5.88         2.14         9.70        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6952 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
       12.03        42.35         6.08        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
       28.31         2.50        64.80       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7180 
        7.99         9.01         1.84        52.31        12.89        10.75 
TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 
      114.94         4.73        47.47        36.00        26.20        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       95.34         4.96        11.87        18.41        58.06        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 
      210.94        89.33         9.67         0.46        22.85        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
        0.07        34.09        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 
       16.27        84.49        19.73         7.13       142.49         6.38 
TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       10.39        10.55        13.25         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        5.00         5.03        37.78        15.68        18.02        14.04 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7754 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 
        1.15         0.99         0.82         1.81         1.45        22.75 
TCGA-IQ-7630 TCGA-IQ-7632 
        5.26         3.72 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.07              0.07 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           129.21            210.94 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           16.930            13.285 
[1] "0.1 - 129.2 (16.9)" "0.1 - 210.9 (13.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     16   54
  7P GAIN WILD-TYPE   68  171
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  FEMALE              16                68
  MALE                54               171
D13V4, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  T1               5                20
  T2              19                58
  T3              17                46
  T4              24                77
D13V5, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  N0              26                76
  N1               6                26
  N2              22                76
  N3               1                 4
D13V6, multiclass
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  I                 5                13
  II               14                33
  III              10                32
  IV               36               118
D13V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     17   53
  7P GAIN WILD-TYPE   59  180
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO               17                59
  YES              53               180
D13V8, continuous
D13V9, continuous
D13V10, multiclass
                                             clus
vv                                            7P GAIN MUTATED 7P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              15                66
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   12                44
  CURRENT SMOKER                                           25                72
  LIFELONG NON-SMOKER                                      14                50
D13V11, continuous

Clustering(14) Variable = 7q gain mutation analysis
D14V1, survival
                   sevent
clus2                 0   1
  7Q GAIN MUTATED    28  16
  7Q GAIN WILD-TYPE 157 105
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               44               262 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               16               105 
$`7Q GAIN MUTATED`
TCGA-BB-7863 TCGA-CN-4722 TCGA-CN-4727 TCGA-CN-5360 TCGA-CN-6012 TCGA-CN-6013 
       13.87         6.31         6.38        28.47         4.70         5.06 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CQ-6225 TCGA-CQ-7067 
        6.18         7.36         1.38         5.82        13.25        16.70 
TCGA-CR-7390 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-5442 
       29.82        17.16       129.21       108.33        89.82        76.47 
TCGA-CV-6933 TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6962 TCGA-CV-7090 
       90.08        11.24        15.06        30.05         4.14       126.12 
TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7235 TCGA-CV-7247 TCGA-CV-7254 
        5.23        21.76        71.21        56.68        18.97        47.97 
TCGA-CV-7261 TCGA-CV-7416 TCGA-CV-7424 TCGA-CV-7437 TCGA-CX-7086 TCGA-D6-6516 
       36.13        25.02        14.86        16.60         7.76        10.68 
TCGA-D6-6827 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-7589 TCGA-F7-8298 TCGA-HD-7753 
        4.18        34.78        16.96        18.90         0.46         0.16 
TCGA-HD-7917 TCGA-IQ-7631 
        1.02         4.01 

$`7Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7864 
        4.60         4.37        18.31        10.19        17.59        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4723 TCGA-CN-4725 
       20.98        37.87        14.04        14.33        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        4.67        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6016 
        8.52        13.58         9.01         6.81         7.50         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 
       32.35        32.88        34.75        32.35         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       26.76        33.07        22.78        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        12.89        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 
       48.36       135.29        47.28        19.20        17.95        87.55 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43         5.88         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        4.70        21.86        26.43       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       42.35         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 
        8.38        28.31         2.50        64.80       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
       12.66         7.99         9.01         1.84        52.31        12.89 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
       10.75       114.94         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 
       26.20        17.10        95.34         4.96        11.87         2.10 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        58.06        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        22.85        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
      100.54        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 
       84.49        19.73         7.13       142.49         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 
       10.39        10.55        27.22        13.25         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 
        2.53         5.00         5.03        37.78        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       14.04        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-8224 
       10.65         1.15         0.99         0.07         0.82         1.81 
TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7632 
        1.45        22.75         5.26         3.72 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.16              0.07 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           129.21            210.94 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
            15.83             13.84 
[1] "0.2 - 129.2 (15.8)" "0.1 - 210.9 (13.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     10   34
  7Q GAIN WILD-TYPE   74  191
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  FEMALE              10                74
  MALE                34               191
D14V4, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  T1               5                20
  T2               9                68
  T3              13                50
  T4              14                87
D14V5, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  N0              18                84
  N1               2                30
  N2              14                84
  N3               0                 5
D14V6, multiclass
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  I                 5                13
  II                9                38
  III               7                35
  IV               20               134
D14V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     11   33
  7Q GAIN WILD-TYPE   65  200
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO               11                65
  YES              33               200
D14V8, continuous
D14V9, continuous
D14V10, multiclass
                                             clus
vv                                            7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              13                68
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    8                48
  CURRENT SMOKER                                           14                83
  LIFELONG NON-SMOKER                                       6                58
D14V11, continuous

Clustering(15) Variable = 8p gain mutation analysis
D15V1, survival
                   sevent
clus2                 0   1
  8P GAIN MUTATED    38  10
  8P GAIN WILD-TYPE 147 111
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               48               258 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               10               111 
$`8P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BA-5559 TCGA-BA-6871 TCGA-BB-4223 TCGA-BB-4224 
        9.30         6.12        57.44         2.07        95.05         9.04 
TCGA-BB-4225 TCGA-BB-7864 TCGA-BB-7870 TCGA-CN-4723 TCGA-CN-4729 TCGA-CN-4731 
        4.60        23.61        37.87        13.55         5.46        12.59 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-6024 TCGA-CN-6994 
       11.44        26.63         9.17         9.50         7.36         3.91 
TCGA-CN-6995 TCGA-CQ-5330 TCGA-CQ-6224 TCGA-CQ-7068 TCGA-CR-6467 TCGA-CR-6470 
        3.68        29.46        32.35        22.78        58.42        50.01 
TCGA-CR-6482 TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7389 TCGA-CV-5430 TCGA-CV-5440 
       11.34        47.34         3.42        12.89       135.29        89.82 
TCGA-CV-5442 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6934 
       76.47        48.59        33.11        40.96        13.32         2.14 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6948 TCGA-CV-7243 TCGA-CV-7253 TCGA-CV-7409 
        5.46        20.52        42.35        31.33        11.87        17.82 
TCGA-CV-7428 TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6823 TCGA-DQ-7588 TCGA-HD-8314 
       54.90         7.76        10.68         7.82        14.04         1.45 

$`8P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 
       27.78        57.90         5.88         7.96        53.75         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 
        8.02        14.79        12.99         3.72         7.76         6.12 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 
        4.37        18.31        10.19        17.59        13.87        20.98 
TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       14.04        14.33         6.31        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       10.68        11.28        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       14.33        28.77        13.05         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        9.07         6.61         6.18         1.38         5.82         2.73 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
        2.93        38.89        27.65        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 
        4.21        28.60        32.35        32.88        34.75        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CR-5243 
        4.21        14.96        26.76        33.07        16.70        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6471 TCGA-CR-6472 
       11.77        54.64        37.87        26.24        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 
       47.18        39.12        40.90        35.84         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 
       17.13        32.78        47.01        27.02        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 
        5.92        35.41        29.92        48.36        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5443 
      108.33        47.28        19.20        17.95        87.55        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5978 
       64.73        17.06        13.35        17.75        57.07         7.07 
TCGA-CV-5979 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6938 
       43.23        24.43         5.88        90.08         9.70         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 
       26.20        18.97        17.10        95.34         4.96        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 
        2.10        36.13        18.41        58.06        35.54       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 
       16.60         6.38        21.99        10.39        10.55        27.22 
TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
       13.25         8.22         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 
       37.78        34.78        16.96        15.68        18.02        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        1.15         0.46         0.99         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.02         1.81        22.75         5.26         4.01         3.72 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             1.45              0.07 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           135.29            210.94 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           13.435            14.560 
[1] "1.4 - 135.3 (13.4)" "0.1 - 210.9 (14.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
[1] "hr=" "2.2"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      9   39
  8P GAIN WILD-TYPE   75  186
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  FEMALE               9                75
  MALE                39               186
D15V4, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  T1               1                24
  T2              13                64
  T3               7                56
  T4              19                82
D15V5, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  N0              16                86
  N1               6                26
  N2              16                82
  N3               2                 3
D15V6, multiclass
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  I                 1                17
  II                5                42
  III               7                35
  IV               27               127
D15V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     10   38
  8P GAIN WILD-TYPE   66  195
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO               10                66
  YES              38               195
D15V8, continuous
D15V9, continuous
D15V10, multiclass
                                             clus
vv                                            8P GAIN MUTATED 8P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              19                62
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                53
  CURRENT SMOKER                                           15                82
  LIFELONG NON-SMOKER                                       9                55
D15V11, continuous

Clustering(16) Variable = 8q gain mutation analysis
D16V1, survival
                   sevent
clus2                 0   1
  8Q GAIN MUTATED    79  43
  8Q GAIN WILD-TYPE 106  78
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              122               184 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               43                78 
$`8Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5558 
        9.30        37.28         8.15         6.12         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44         5.00         2.07        12.99         3.72         7.76 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7863 
       95.05         9.04         4.60         4.37        18.31        13.87 
TCGA-BB-7864 TCGA-BB-7870 TCGA-BB-7872 TCGA-CN-4723 TCGA-CN-4728 TCGA-CN-4729 
       23.61        37.87        14.33        13.55        10.68         5.46 
TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5355 TCGA-CN-5356 
       12.59         7.89        11.44        26.63         9.17         9.50 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5373 TCGA-CN-6024 TCGA-CN-6988 
        8.28        16.21        11.84        13.58         7.36         1.38 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5334 
        3.91         3.68         3.75        27.65        29.46         4.21 
TCGA-CQ-6218 TCGA-CQ-6224 TCGA-CQ-6228 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 
       28.60        32.35        14.96        33.07        22.78        84.23 
TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6473 TCGA-CR-6482 TCGA-CR-6488 
       11.77        58.42        50.01        36.99        11.34        12.46 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7379 TCGA-CR-7386 
       39.12        47.34        35.84         3.42        34.06        47.01 
TCGA-CR-7389 TCGA-CR-7401 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 
       12.89        35.41       135.29       129.21        47.28        19.20 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5976 
       89.82        87.55        76.47        64.73        17.06        48.59 
TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 
       33.11        40.96        13.32         2.14         5.46        20.52 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
       11.24       126.08        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7102 TCGA-CV-7104 
        6.08         4.14       126.12        18.81         1.84        12.89 
TCGA-CV-7178 TCGA-CV-7235 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       71.21        56.68        31.33        26.20        18.97        17.10 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7414 TCGA-CV-7416 
       11.87        47.97        35.54        17.82         0.46        25.02 
TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7434 TCGA-CV-7437 
        0.07       100.54       156.49        54.90         7.13        16.60 
TCGA-CV-7438 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        6.38         7.76        27.22        10.68         8.22         7.82 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7592 TCGA-F7-7848 
       37.78        34.78        14.04        18.90         9.83         1.15 
TCGA-HD-7917 TCGA-HD-8314 
        1.02         1.45 

$`8Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
       15.16        13.64         9.07         6.25        27.78        57.90 
TCGA-BA-5556 TCGA-BA-6869 TCGA-BA-6870 TCGA-BB-4217 TCGA-BB-7861 TCGA-BB-7862 
        5.88         8.02        14.79         6.12        10.19        17.59 
TCGA-BB-7866 TCGA-BB-7871 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       20.98        14.04         6.31        10.19         4.67         6.38 
TCGA-CN-4730 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4741 
       11.28        17.16        12.13        12.99        14.33        28.77 
TCGA-CN-4742 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5365 TCGA-CN-5367 
       13.05         5.69        12.39        28.47        11.54        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
       12.49         8.52         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6997 
        9.07         6.61         6.18         5.82         2.73         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       33.80        10.42        11.21        32.35        32.88        34.75 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7067 TCGA-CR-5248 TCGA-CR-5249 
       13.25         4.21        26.76        16.70        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       26.24        39.52        34.52        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 TCGA-CR-6492 
       11.90        10.22        11.64         7.66        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
        9.27        47.18        40.90         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
        0.99        31.96        19.92        26.17        17.13        32.78 
TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 
       30.54         7.10         5.13         5.92        29.92        48.36 
TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5439 TCGA-CV-5443 TCGA-CV-5970 TCGA-CV-5971 
       17.16       108.33        17.95        84.39        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       57.07         7.07        43.23        24.43         5.88        90.08 
TCGA-CV-6935 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6943 TCGA-CV-6953 
        9.70         4.70        21.86        26.43        19.79        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
       64.80       111.12        12.66         7.99         9.01         5.23 
TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 
       52.31        21.76        10.75       114.94         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
       36.00        95.34         4.96         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7418 
       58.06       210.94        89.33         9.67        22.85        25.94 
TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       34.09        14.86        56.48         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 
       19.73       142.49        21.99        10.39        10.55        13.25 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5629 TCGA-DQ-5630 
        2.53         5.00         5.03         4.18        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       18.02        21.73        11.84        12.13        12.10        10.65 
TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-8224 
        0.46         0.99         0.07         0.16         0.82         1.81 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
       22.75         5.26         4.01         3.72 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.07              0.07 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           156.49            210.94 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           15.635            13.300 
[1] "0.1 - 156.5 (15.6)" "0.1 - 210.9 (13.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     33   91
  8Q GAIN WILD-TYPE   51  134
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  FEMALE              33                51
  MALE                91               134
D16V4, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  T1               7                18
  T2              30                47
  T3              22                41
  T4              47                54
D16V5, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  N0              34                68
  N1              12                20
  N2              45                53
  N3               3                 2
D16V6, multiclass
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  I                 5                13
  II               18                29
  III              15                27
  IV               68                86
D16V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     30   94
  8Q GAIN WILD-TYPE   46  139
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO               30                46
  YES              94               139
D16V8, continuous
D16V9, continuous
D16V10, multiclass
                                             clus
vv                                            8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              38                43
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   17                39
  CURRENT SMOKER                                           37                60
  LIFELONG NON-SMOKER                                      29                35
D16V11, continuous

Clustering(17) Variable = 9p gain mutation analysis
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN MUTATED    24  13
  9P GAIN WILD-TYPE 161 108
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               37               269 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               13               108 
$`9P GAIN MUTATED`
TCGA-BA-5556 TCGA-BA-5559 TCGA-BB-7870 TCGA-CN-5355 TCGA-CN-5363 TCGA-CN-5370 
        5.88        57.44        37.87         9.17         8.28         8.52 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6023 TCGA-CN-6996 TCGA-CQ-5329 TCGA-CQ-7068 
        6.81         7.50         6.18         3.75        27.65        22.78 
TCGA-CR-6467 TCGA-CR-6487 TCGA-CR-7373 TCGA-CR-7395 TCGA-CV-5440 TCGA-CV-5441 
       58.42         7.66        29.23        30.54        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5966 TCGA-CV-5977 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6952 
       76.47        17.06        33.11        13.32        24.43         6.08 
TCGA-CV-6962 TCGA-CV-7099 TCGA-CV-7247 TCGA-CV-7254 TCGA-CV-7407 TCGA-CV-7409 
        4.14         7.99        18.97        47.97        35.54        17.82 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 TCGA-D6-6516 TCGA-DQ-5625 TCGA-H7-7774 
       56.48       156.49         3.48        10.68        34.78         0.99 
TCGA-HL-7533 
       22.75 

$`9P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5558 
        6.25        27.78        57.90         6.12         7.96        53.75 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        5.00         8.02        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        23.61        20.98 
TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       14.04        14.33         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       28.77        13.05         9.50         5.69        12.39        28.47 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5373 
       16.21        11.54        11.84        11.57        12.49        13.58 
TCGA-CN-5374 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        9.01         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 
        4.41         3.19         9.07         6.61         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-6998 
        5.82         2.73         3.91         3.68         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 
       48.16        39.68        21.50         2.93        38.89        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       33.80        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       26.76        33.07        16.70        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       37.87        26.24        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
       11.64        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       24.95         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7397 TCGA-CR-7398 
       30.02        31.10        29.85        29.52         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5443 
      129.21       108.33        47.28        19.20        17.95        84.39 
TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 
       64.73        13.35        17.75        57.07        48.59         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       43.23        40.96         5.88        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        2.50        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        31.33        26.20        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7410 
       11.87         2.10        36.13        18.41        58.06       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7430 
        0.07        34.09       100.54        14.86        54.90        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       37.78        16.96        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        1.15         0.46         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.81         1.45         5.26         4.01         3.72 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             0.99              0.07 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           156.49            210.94 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
            18.97             13.87 
[1] "1.0 - 156.5 (19.0)" "0.1 - 210.9 (13.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED     14   23
  9P GAIN WILD-TYPE   70  202
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  FEMALE              14                70
  MALE                23               202
D17V4, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  T1               2                23
  T2              10                67
  T3               7                56
  T4              15                86
D17V5, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  N0              13                89
  N1               4                28
  N2               9                89
  N3               2                 3
D17V6, multiclass
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  I                 2                16
  II                9                38
  III               4                38
  IV               19               135
D17V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      8   29
  9P GAIN WILD-TYPE   68  204
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO                8                68
  YES              29               204
D17V8, continuous
D17V9, continuous
D17V10, multiclass
                                             clus
vv                                            9P GAIN MUTATED 9P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              13                68
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    9                47
  CURRENT SMOKER                                            7                90
  LIFELONG NON-SMOKER                                       8                56
D17V11, continuous

Clustering(18) Variable = 9q gain mutation analysis
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN MUTATED    27  16
  9Q GAIN WILD-TYPE 158 105
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               43               263 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               16               105 
$`9Q GAIN MUTATED`
TCGA-BA-5149 TCGA-BA-5556 TCGA-BA-5559 TCGA-BB-7864 TCGA-BB-7870 TCGA-CN-4727 
        8.15         5.88        57.44        23.61        37.87         6.38 
TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-5367 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6023 
       28.77         9.17        11.57         6.81         7.50         6.18 
TCGA-CN-6996 TCGA-CQ-5323 TCGA-CQ-7068 TCGA-CR-6467 TCGA-CR-7368 TCGA-CR-7373 
        3.75        48.16        22.78        58.42        40.90        29.23 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5966 TCGA-CV-5977 TCGA-CV-6433 
       17.95        89.82        76.47        17.06        33.11        13.32 
TCGA-CV-6436 TCGA-CV-6952 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7099 TCGA-CV-7100 
       24.43         6.08         4.14        64.80         7.99         9.01 
TCGA-CV-7235 TCGA-CV-7247 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7415 TCGA-CV-7425 
       56.68        18.97        35.54        17.82        22.85        56.48 
TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-7434 TCGA-D6-6516 TCGA-DQ-5625 TCGA-H7-7774 
      156.49         3.48         7.13        10.68        34.78         0.99 
TCGA-HD-8314 
        1.45 

$`9Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         9.07         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 
       27.78        57.90         6.12         7.96        53.75         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        8.02        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 
       10.19        17.59        13.87        20.98        14.04        14.33 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 
        6.31        13.55        10.19         4.67        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 
       14.33        11.44        26.63        13.05         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6012 TCGA-CN-6013 
       12.49         8.52        13.58         9.01         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.61         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.68         3.29         1.51        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 
       13.25         4.21        14.96        26.76        33.07        16.70 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 
       84.23        11.77        54.64        37.87        26.24        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 
       35.84         3.42         3.06        24.95         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.92        48.36       135.29        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5970 
       47.28        19.20        87.55        84.39        64.73        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       17.75        57.07        48.59         7.07        43.23        40.96 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6954 
       12.03        42.35        15.06        30.05        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7090 
       10.98         7.13         8.38        28.31         2.50       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
      111.12        18.81        12.66         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 
       12.89        21.76        71.21        10.75       114.94         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 
       47.47        36.00        31.33        26.20        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 
       58.06       210.94        89.33         9.67         0.46        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7428 
       25.94         0.07        34.09       100.54        14.86        54.90 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       16.27        84.49        19.73       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       37.78        16.96        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        1.15         0.46         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.81        22.75         5.26         4.01         3.72 

  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             0.99              0.07 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           156.49            210.94 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
            17.95             13.87 
[1] "1.0 - 156.5 (17.9)" "0.1 - 210.9 (13.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     13   31
  9Q GAIN WILD-TYPE   71  194
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  FEMALE              13                71
  MALE                31               194
D18V4, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  T1               2                23
  T2              10                67
  T3               8                55
  T4              21                80
D18V5, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  N0              15                87
  N1               6                26
  N2              14                84
  N3               1                 4
D18V6, multiclass
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  I                 2                16
  II                7                40
  III               4                38
  IV               28               126
D18V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     13   31
  9Q GAIN WILD-TYPE   63  202
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO               13                63
  YES              31               202
D18V8, continuous
D18V9, continuous
D18V10, multiclass
                                             clus
vv                                            9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              16                65
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    9                47
  CURRENT SMOKER                                            8                89
  LIFELONG NON-SMOKER                                       9                55
D18V11, continuous

Clustering(19) Variable = 10p gain mutation analysis
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN MUTATED     9   3
  10P GAIN WILD-TYPE 176 118
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                12                294 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 3                118 
$`10P GAIN MUTATED`
TCGA-BA-5151 TCGA-BA-6869 TCGA-CN-4727 TCGA-CN-5356 TCGA-CN-6013 TCGA-CR-5247 
        6.25         8.02         6.38         9.50         5.06        11.77 
TCGA-CR-6488 TCGA-CR-7399 TCGA-CV-7250 TCGA-CV-7254 TCGA-CV-7421 TCGA-F7-7848 
       12.46         5.92        95.34        47.97         0.07         1.15 

$`10P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       57.44         5.00        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        23.61        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       37.87        14.04        14.33         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        4.67        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       28.77        13.05         9.17         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61         6.18         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       33.80        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 
       26.76        33.07        16.70        22.78        84.23        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.34        11.64         7.66        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
       30.54         7.10         5.13        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        40.96        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 
       36.00        31.33        26.20        18.97        17.10         4.96 
TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       11.87         2.10        36.13        18.41        58.06        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.02        25.94        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        7.82         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       34.78        16.96        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        0.46         0.99         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.81         1.45        22.75         5.26         4.01         3.72 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              0.07               0.07 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             95.34             210.94 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              7.20              14.91 
[1] "0.1 - 95.3 (7.2)"   "0.1 - 210.9 (14.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D19V2, continuous
D19V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      2   10
  10P GAIN WILD-TYPE   82  215
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  FEMALE                2                 82
  MALE                 10                215
D19V4, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  T1                0                 25
  T2                2                 75
  T3                3                 60
  T4                6                 95
D19V5, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  N0                7                 95
  N1                1                 31
  N2                2                 96
  N3                0                  5
D19V6, multiclass
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  I                  0                 18
  II                 2                 45
  III                2                 40
  IV                 7                147
D19V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      4    8
  10P GAIN WILD-TYPE   72  225
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO                 4                 72
  YES                8                225
D19V8, continuous
D19V9, continuous
D19V10, multiclass
                                             clus
vv                                            10P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                1
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             5
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            10P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 80
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      52
  CURRENT SMOKER                                              92
  LIFELONG NON-SMOKER                                         62
D19V11, continuous

Clustering(20) Variable = 10q gain mutation analysis
D20V1, survival
                    sevent
clus2                  0   1
  10Q GAIN MUTATED     4   2
  10Q GAIN WILD-TYPE 181 119
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 6                300 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 2                119 
$`10Q GAIN MUTATED`
TCGA-BA-5151 TCGA-BA-6872 TCGA-CN-4727 TCGA-CN-6013 TCGA-CR-7399 TCGA-CV-6441 
        6.25        12.99         6.38         5.06         5.92         5.88 

$`10Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 
       57.44         5.00         8.02        14.79         2.07         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        23.61        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       37.87        14.04        14.33         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        4.67        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        4.70         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 
       14.96        26.76        33.07        16.70        22.78        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       57.07        48.59        33.11         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       13.32        24.43        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        58.06        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 
        2.53         5.00         5.03         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       11.84         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        0.46         0.99         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.81         1.45        22.75         5.26         4.01         3.72 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              5.06               0.07 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             12.99             210.94 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             6.085             14.825 
[1] "5.1 - 13.0 (6.1)"   "0.1 - 210.9 (14.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
[1] "hr=" "3.4"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      1    5
  10Q GAIN WILD-TYPE   83  220
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  FEMALE                1                 83
  MALE                  5                220
D20V4, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  T1                0                 25
  T2                0                 77
  T3                2                 61
  T4                3                 98
D20V5, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  N0                3                 99
  N1                0                 32
  N2                2                 96
  N3                0                  5
D20V6, multiclass
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  I                  0                 18
  II                 0                 47
  III                1                 41
  IV                 4                150
D20V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      4    2
  10Q GAIN WILD-TYPE   72  231
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                 4                 72
  YES                2                231
D20V8, continuous
D20V9, continuous
[1] "Remove cluster labels:" "10Q GAIN MUTATED"      
clus
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 2                118 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5152 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-6868 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6871         TCGA-BB-4225         TCGA-BB-4227 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-7862         TCGA-BB-7864         TCGA-CN-4723 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4731         TCGA-CN-4736 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5367         TCGA-CN-5370 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-6011         TCGA-CN-6017 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6021         TCGA-CN-6023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6994         TCGA-CN-6997 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5330         TCGA-CQ-5331 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-6218 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CR-6467 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6477         TCGA-CR-6478 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6487         TCGA-CR-6493 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7370         TCGA-CR-7373 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7385         TCGA-CR-7386 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7395 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7397         TCGA-CR-7401         TCGA-CV-5430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5435 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5444 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5966         TCGA-CV-5970         TCGA-CV-5977 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6933         TCGA-CV-6937 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6951         TCGA-CV-6952 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6960         TCGA-CV-6961         TCGA-CV-7091 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7095         TCGA-CV-7097         TCGA-CV-7099 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7100         TCGA-CV-7102         TCGA-CV-7235 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7254         TCGA-CV-7406 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7410         TCGA-CV-7414         TCGA-CV-7418 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7427         TCGA-CV-7430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7434         TCGA-CX-7082 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CX-7085         TCGA-D6-6516         TCGA-D6-6517 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6825         TCGA-DQ-5629         TCGA-DQ-5630 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-H7-7774 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-7754         TCGA-HL-7533         TCGA-IQ-7631 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-7632 
"10Q GAIN WILD-TYPE" 
D20V10, multiclass
                                             clus
vv                                            10Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                2
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     1
  CURRENT SMOKER                                             2
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            10Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 79
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      55
  CURRENT SMOKER                                              95
  LIFELONG NON-SMOKER                                         63
D20V11, continuous

Clustering(21) Variable = 11p gain mutation analysis
D21V1, survival
                    sevent
clus2                  0   1
  11P GAIN MUTATED    12   4
  11P GAIN WILD-TYPE 173 117
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                16                290 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 4                117 
$`11P GAIN MUTATED`
TCGA-BB-4225 TCGA-CN-4737 TCGA-CN-5367 TCGA-CQ-5334 TCGA-CQ-7065 TCGA-CR-7370 
        4.60         7.89        11.57         4.21        33.07         3.42 
TCGA-CR-7382 TCGA-CV-5440 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-7254 TCGA-CV-7409 
       26.17        89.82        40.96        13.32        47.97        17.82 
TCGA-D6-6516 TCGA-D6-6827 TCGA-HD-7229 TCGA-IQ-7630 
       10.68         4.18         0.07         5.26 

$`11P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 
       20.98        37.87        14.04        14.33         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 
       12.59        17.16        12.13        12.99        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-6218 
       27.65        29.46        33.80        10.42        11.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 
       14.96        26.76        16.70        22.78        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
       35.84         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       34.06        19.92        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       19.20        17.95        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
        7.07        43.23        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 
        2.10        36.13        18.41        58.06        35.54       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
        7.76        27.22        13.25         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        5.00         5.03        37.78        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       18.02        14.04        18.90        21.73        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 
       12.13        12.10        10.65         1.15         0.46         0.99 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 
        0.16         0.82         1.02         1.81         1.45        22.75 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              0.07               0.07 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             89.82             210.94 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
            11.125             14.560 
[1] "0.1 - 89.8 (11.1)"  "0.1 - 210.9 (14.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
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"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      4   12
  11P GAIN WILD-TYPE   80  213
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  FEMALE                4                 80
  MALE                 12                213
D21V4, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  T1                2                 23
  T2                7                 70
  T3                1                 62
  T4                4                 97
D21V5, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  N0                6                 96
  N1                1                 31
  N2                5                 93
  N3                1                  4
D21V6, multiclass
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  I                  2                 16
  II                 4                 43
  III                1                 41
  IV                 7                147
D21V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      5   11
  11P GAIN WILD-TYPE   71  222
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                 5                 71
  YES               11                222
D21V8, continuous
D21V9, continuous
D21V10, multiclass
                                             clus
vv                                            11P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                4
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     3
  CURRENT SMOKER                                             3
  LIFELONG NON-SMOKER                                        6
                                             clus
vv                                            11P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 77
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      53
  CURRENT SMOKER                                              94
  LIFELONG NON-SMOKER                                         58
D21V11, continuous

Clustering(22) Variable = 11q gain mutation analysis
D22V1, survival
                    sevent
clus2                  0   1
  11Q GAIN MUTATED    11   5
  11Q GAIN WILD-TYPE 174 116
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                16                290 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 5                116 
$`11Q GAIN MUTATED`
TCGA-BA-5558 TCGA-BB-4225 TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-5367 TCGA-CQ-5334 
       53.75         4.60        12.59         7.89        11.57         4.21 
TCGA-CQ-7065 TCGA-CR-7370 TCGA-CV-6003 TCGA-CV-6960 TCGA-CV-7416 TCGA-D6-6516 
       33.07         3.42        40.96        28.31        25.02        10.68 
TCGA-D6-6827 TCGA-DQ-5631 TCGA-HD-7229 TCGA-IQ-7630 
        4.18        18.02         0.07         5.26 

$`11Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 
        3.72         7.76         6.12        95.05         9.04         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        23.61        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       37.87        14.04        14.33         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4733 
        4.67         6.38        10.68         5.46        11.28        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.13        12.99        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 
        8.28        16.21        11.54        11.84        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       13.58         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61         6.18         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       33.80        10.42        11.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       16.70        22.78        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 
       47.18        39.12        47.34        40.90        35.84         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
        7.07        43.23        13.32        24.43         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        7.13         8.38         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       47.97         2.10        36.13        18.41        58.06        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 
       10.55         7.76        27.22        13.25         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        2.53         5.00         5.03        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       15.68        14.04        18.90        21.73        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 
       12.13        12.10        10.65         1.15         0.46         0.99 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 
        0.16         0.82         1.02         1.81         1.45        22.75 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              0.07               0.07 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             53.75             210.94 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            11.125             14.560 
[1] "0.1 - 53.8 (11.1)"  "0.1 - 210.9 (14.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      6   10
  11Q GAIN WILD-TYPE   78  215
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  FEMALE                6                 78
  MALE                 10                215
D22V4, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  T1                2                 23
  T2                4                 73
  T3                2                 61
  T4                4                 97
D22V5, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  N0                6                 96
  N1                1                 31
  N2                4                 94
  N3                0                  5
D22V6, multiclass
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  I                  2                 16
  II                 2                 45
  III                2                 40
  IV                 6                148
D22V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      5   11
  11Q GAIN WILD-TYPE   71  222
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                 5                 71
  YES               11                222
D22V8, continuous
D22V9, continuous
D22V10, multiclass
                                             clus
vv                                            11Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                7
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     2
  CURRENT SMOKER                                             1
  LIFELONG NON-SMOKER                                        6
                                             clus
vv                                            11Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 74
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      54
  CURRENT SMOKER                                              96
  LIFELONG NON-SMOKER                                         58
D22V11, continuous

Clustering(23) Variable = 12p gain mutation analysis
D23V1, survival
                    sevent
clus2                  0   1
  12P GAIN MUTATED    38  21
  12P GAIN WILD-TYPE 147 100
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                59                247 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                21                100 
$`12P GAIN MUTATED`
TCGA-BA-5559 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-7862 TCGA-CN-4725 
       57.44        95.05         9.04         4.60        17.59        10.19 
TCGA-CN-4729 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-5359 TCGA-CN-6023 TCGA-CN-6024 
        5.46         7.89        14.33        12.39         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6994 TCGA-CQ-5329 TCGA-CQ-5332 TCGA-CR-5243 TCGA-CR-5247 
        1.38         3.91        27.65        10.42        84.23        11.77 
TCGA-CR-6467 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-7364 TCGA-CR-7390 TCGA-CR-7398 
       58.42         7.66        12.46        47.18        29.82         5.13 
TCGA-CR-7399 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 
        5.92       135.29        17.16       129.21       108.33        89.82 
TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6937 TCGA-CV-6941 TCGA-CV-6945 
        7.07        40.96        90.08        20.52        11.24        12.03 
TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7245 
        4.14       111.12         1.84        52.31        21.76        26.20 
TCGA-CV-7247 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7418 
       18.97        47.97        36.13        35.54        17.82        25.94 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 TCGA-CX-7086 TCGA-D6-6516 TCGA-DQ-5629 
      142.49        16.60        21.99         7.76        10.68        16.96 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7754 
       11.84         9.83         1.15         0.99         0.82 

$`12P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       53.75         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        3.72         7.76         6.12         4.37        18.31        10.19 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       13.87        23.61        20.98        37.87        14.04        14.33 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 
        6.31        13.55         4.67         6.38        10.68        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4739 TCGA-CN-4740 
       12.59        17.16        12.13        12.99        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5360 
       28.77        13.05         9.17         9.50         5.69        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 
        9.07         6.61         5.82         2.73         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       38.89        29.46        33.80        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5248 
       14.96        26.76        33.07        16.70        22.78        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       37.87        26.24        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 
       11.64        11.51        15.75         9.27        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 
       32.78        47.01        27.02        12.89        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7401 TCGA-CR-7402 
       29.85        29.52        30.54         7.10        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 
       48.36        47.28        19.20        17.95        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
       48.59        33.11        43.23        13.32        24.43         5.88 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        2.14         9.70         5.46         4.70        21.86        26.43 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
      126.08        19.79        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
        2.50        64.80       126.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
        9.01         5.23        12.89        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7248 
       56.68         4.73        47.47        36.00        31.33        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 
       95.34         4.96        11.87         2.10        18.41        58.06 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7438 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 
        6.38        10.39        10.55        27.22        13.25         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        7.82         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       34.78        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-8298 TCGA-HD-7229 TCGA-HD-7753 
       12.13        12.10        10.65         0.46         0.07         0.16 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.02         1.81         1.45        22.75         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              0.82               0.07 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            142.49             210.94 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             16.60              14.04 
[1] "0.8 - 142.5 (16.6)" "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     12   48
  12P GAIN WILD-TYPE   72  177
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  FEMALE               12                 72
  MALE                 48                177
D23V4, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  T1                3                 22
  T2               19                 58
  T3               13                 50
  T4               18                 83
D23V5, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  N0               19                 83
  N1                6                 26
  N2               20                 78
  N3                2                  3
D23V6, multiclass
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  I                  3                 15
  II                10                 37
  III               10                 32
  IV                30                124
D23V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     12   48
  12P GAIN WILD-TYPE   64  185
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO                12                 64
  YES               48                185
D23V8, continuous
D23V9, continuous
D23V10, multiclass
                                             clus
vv                                            12P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               19
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     7
  CURRENT SMOKER                                            18
  LIFELONG NON-SMOKER                                       14
                                             clus
vv                                            12P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 62
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      49
  CURRENT SMOKER                                              79
  LIFELONG NON-SMOKER                                         50
D23V11, continuous

Clustering(24) Variable = 12q gain mutation analysis
D24V1, survival
                    sevent
clus2                  0   1
  12Q GAIN MUTATED    18   7
  12Q GAIN WILD-TYPE 167 114
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                25                281 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 7                114 
$`12Q GAIN MUTATED`
TCGA-BA-5559 TCGA-BA-6871 TCGA-BB-4223 TCGA-BB-4225 TCGA-CN-4725 TCGA-CN-4727 
       57.44         2.07        95.05         4.60        10.19         6.38 
TCGA-CN-4737 TCGA-CN-6023 TCGA-CN-6988 TCGA-CQ-5332 TCGA-CR-5247 TCGA-CR-6467 
        7.89         6.18         1.38        10.42        11.77        58.42 
TCGA-CR-7399 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-6941 TCGA-CV-6962 
        5.92       135.29        17.16       108.33        11.24         4.14 
TCGA-CV-7091 TCGA-CV-7102 TCGA-CV-7245 TCGA-CV-7440 TCGA-D6-6516 TCGA-DQ-7591 
      111.12         1.84        26.20        21.99        10.68        11.84 
TCGA-H7-7774 
        0.99 

$`12Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       53.75         5.00         8.02        14.79        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        7.76         6.12         9.04         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.59        13.87        23.61        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 
       14.33         6.31        13.55         4.67        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 
       11.28        12.59        17.16        12.13        12.99        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        6.81         7.50         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 
        1.48         4.41         3.19         9.07         6.61         7.36 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       27.65        29.46        33.80        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 
       14.96        26.76        33.07        16.70        22.78        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       54.64        37.87        26.24        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.54         7.10         5.13        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
       48.36       129.21        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 
       28.31         2.50        64.80       126.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         5.23        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        31.33        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       11.87        47.97         2.10        36.13        18.41        58.06 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
       22.85        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 
       10.39        10.55         7.76        27.22        13.25         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        7.82         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       34.78        16.96        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       21.73         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        0.46         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.45        22.75         5.26         4.01         3.72 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              0.99               0.07 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
            135.29             210.94 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             10.68              14.86 
[1] "1.0 - 135.3 (10.7)" "0.1 - 210.9 (14.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      3   22
  12Q GAIN WILD-TYPE   81  203
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  FEMALE                3                 81
  MALE                 22                203
D24V4, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  T1                2                 23
  T2                5                 72
  T3                6                 57
  T4                7                 94
D24V5, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  N0                8                 94
  N1                1                 31
  N2                9                 89
  N3                0                  5
D24V6, multiclass
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  I                  2                 16
  II                 2                 45
  III                3                 39
  IV                13                141
D24V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      8   17
  12Q GAIN WILD-TYPE   68  216
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                 8                 68
  YES               17                216
D24V8, continuous
D24V9, continuous
D24V10, multiclass
                                             clus
vv                                            12Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               12
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                             4
  LIFELONG NON-SMOKER                                        4
                                             clus
vv                                            12Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 69
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      51
  CURRENT SMOKER                                              93
  LIFELONG NON-SMOKER                                         60
D24V11, continuous

Clustering(25) Variable = 13q gain mutation analysis
D25V1, survival
                    sevent
clus2                  0   1
  13Q GAIN MUTATED    10   7
  13Q GAIN WILD-TYPE 175 114
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                17                289 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 7                114 
$`13Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BB-4225 TCGA-CN-4729 TCGA-CN-6013 TCGA-CR-6488 TCGA-CR-7367 
        9.30         4.60         5.46         5.06        12.46        47.34 
TCGA-CR-7390 TCGA-CV-5440 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-7095 TCGA-CV-7178 
       29.82        89.82        40.96        90.08        18.81        71.21 
TCGA-CV-7243 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7437 TCGA-DQ-5629 
       31.33         0.46        25.02        16.60        16.96 

$`13Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 
        3.72         7.76         6.12        95.05         9.04         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        23.61        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       37.87        14.04        14.33         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        4.67         6.38        10.68        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        4.70         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 
       14.96        26.76        33.07        16.70        22.78        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 
       11.90        10.22        11.34        11.64         7.66        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 
       15.75         9.27        47.18        39.12        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        12.89        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       19.20        17.95        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 
        7.07        43.23        13.32        24.43         5.88         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
      111.12        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       52.31        12.89        21.76        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
        4.73        47.47        36.00        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        58.06        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
        9.67        22.85        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 
       84.49        19.73         7.13       142.49         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       37.78        34.78        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        1.15         0.46         0.99         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.02         1.81         1.45        22.75         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              0.46               0.07 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             90.08             210.94 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             18.81              13.87 
[1] "0.5 - 90.1 (18.8)"  "0.1 - 210.9 (13.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      5   12
  13Q GAIN WILD-TYPE   79  213
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  FEMALE                5                 79
  MALE                 12                213
D25V4, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  T1                0                 25
  T2                6                 71
  T3                2                 61
  T4                7                 94
D25V5, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  N0                3                 99
  N1                5                 27
  N2                4                 94
  N3                0                  5
D25V6, multiclass
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  I                  0                 18
  II                 3                 44
  III                5                 37
  IV                 7                147
D25V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      4   13
  13Q GAIN WILD-TYPE   72  220
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                 4                 72
  YES               13                220
D25V8, continuous
D25V9, continuous
D25V10, multiclass
                                             clus
vv                                            13Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                4
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     3
  CURRENT SMOKER                                             4
  LIFELONG NON-SMOKER                                        5
                                             clus
vv                                            13Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 77
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      53
  CURRENT SMOKER                                              93
  LIFELONG NON-SMOKER                                         59
D25V11, continuous

Clustering(26) Variable = 14q gain mutation analysis
D26V1, survival
                    sevent
clus2                  0   1
  14Q GAIN MUTATED    28  23
  14Q GAIN WILD-TYPE 157  98
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                51                255 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                23                 98 
$`14Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BA-6872 TCGA-BA-6873 TCGA-CN-4723 TCGA-CN-5363 
        9.30         6.12        12.99         3.72        13.55         8.28 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-6021 TCGA-CQ-5329 TCGA-CQ-5334 TCGA-CQ-6220 
       11.84        11.57         9.07        27.65         4.21        32.35 
TCGA-CR-6477 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7380 
       16.90        12.46        11.51        47.34         3.42        19.92 
TCGA-CR-7383 TCGA-CR-7390 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-5973 
       17.13        29.82       129.21       108.33        89.82        57.07 
TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6934 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6950 
       33.11        40.96         2.14        26.43       126.08        15.06 
TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7101 TCGA-CV-7178 TCGA-CV-7243 TCGA-CV-7245 
      126.12        18.81         5.23        71.21        31.33        26.20 
TCGA-CV-7409 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7434 TCGA-CV-7437 
       17.82         9.67        22.85        25.02         7.13        16.60 
TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6825 TCGA-DQ-5625 TCGA-DQ-5629 
        7.76        10.68         7.82         5.00        34.78        16.96 
TCGA-DQ-7589 TCGA-DQ-7593 TCGA-HD-7753 
       18.90        12.13         0.16 

$`14Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       27.78        57.90         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-7269 TCGA-BB-4217 
        5.00         8.02        14.79         2.07         7.76         6.12 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
       95.05         9.04         4.60         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.59        13.87        23.61        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
       14.33         6.31        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 
        9.17         9.50         5.69        12.39        28.47        16.21 
TCGA-CN-5365 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.54        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        4.41         3.19         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-6218 TCGA-CQ-6221 
       29.46        33.80        10.42        11.21        28.60        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       33.07        16.70        22.78        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       36.99        18.51         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       11.64         7.66        15.75         9.27        47.18        39.12 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       40.90        35.84         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       31.96        34.06        26.17        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       12.89        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 
      135.29        17.16        47.28        19.20        17.95        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
       48.59         7.07        43.23        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
       90.08         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6941 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 
       11.24        19.79        12.03        42.35        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 
        2.50         4.14        64.80       111.12        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 
        9.01         1.84        52.31        12.89        21.76        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7247 
      114.94        56.68         4.73        47.47        36.00        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 
       36.13        18.41        58.06        35.54       210.94        89.33 
TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
        0.46        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
       19.73       142.49         6.38        21.99        10.39        10.55 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 
       27.22        13.25         8.22         2.53         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 
       37.78        15.68        18.02        14.04        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 
        9.83        12.10        10.65         1.15         0.46         0.99 
TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 
        0.07         0.82         1.02         1.81         1.45        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              0.16               0.07 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
            129.21             210.94 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             16.90              13.87 
[1] "0.2 - 129.2 (16.9)" "0.1 - 210.9 (13.9)"
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
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        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
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        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
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        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
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        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
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        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
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        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D26V2, continuous
D26V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     17   34
  14Q GAIN WILD-TYPE   67  191
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  FEMALE               17                 67
  MALE                 34                191
D26V4, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  T1                4                 21
  T2               12                 65
  T3               10                 53
  T4               17                 84
D26V5, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  N0               16                 86
  N1                6                 26
  N2               13                 85
  N3                2                  3
D26V6, multiclass
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  I                  4                 14
  II                 9                 38
  III                8                 34
  IV                22                132
D26V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      9   42
  14Q GAIN WILD-TYPE   67  191
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                 9                 67
  YES               42                191
D26V8, continuous
D26V9, continuous
D26V10, multiclass
                                             clus
vv                                            14Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               14
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                            18
  LIFELONG NON-SMOKER                                       12
                                             clus
vv                                            14Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 67
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      51
  CURRENT SMOKER                                              79
  LIFELONG NON-SMOKER                                         52
D26V11, continuous

Clustering(27) Variable = 15q gain mutation analysis
D27V1, survival
                    sevent
clus2                  0   1
  15Q GAIN MUTATED     9   4
  15Q GAIN WILD-TYPE 176 117
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                13                293 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 4                117 
$`15Q GAIN MUTATED`
TCGA-BA-6871 TCGA-BB-7861 TCGA-CN-4729 TCGA-CN-4737 TCGA-CR-6477 TCGA-CR-6484 
        2.07        10.19         5.46         7.89        16.90        11.64 
TCGA-CV-7178 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7418 TCGA-D6-6516 TCGA-DQ-7589 
       71.21         9.67        22.85        25.94        10.68        18.90 
TCGA-HD-7753 
        0.16 

$`15Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 
       53.75        57.44         5.00         8.02        14.79        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
        4.37        18.31        17.59        13.87        23.61        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       37.87        14.04        14.33         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        4.67         6.38        10.68        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.13        12.99        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 
       14.96        26.76        33.07        16.70        22.78        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6478 TCGA-CR-6480 
       39.52        34.52        36.99        18.51         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       10.22        11.34         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.92        48.36       135.29        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       47.28        19.20        17.95        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       12.89        21.76        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        58.06        35.54        17.82       210.94        89.33 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
        0.46        25.02         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 
       10.39        10.55         7.76        27.22        13.25         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        7.82         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 
       34.78        16.96        15.68        18.02        14.04        21.73 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       11.84         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        0.46         0.99         0.07         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.45        22.75         5.26         4.01         3.72 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              0.16               0.07 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             71.21             210.94 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             10.68              14.33 
[1] "0.2 - 71.2 (10.7)"  "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      4    9
  15Q GAIN WILD-TYPE   80  216
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  FEMALE                4                 80
  MALE                  9                216
D27V4, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  T1                3                 22
  T2                3                 74
  T3                0                 63
  T4                4                 97
D27V5, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  N0                3                 99
  N1                2                 30
  N2                5                 93
  N3                0                  5
D27V6, multiclass
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  I                  2                 16
  II                 1                 46
  III                2                 40
  IV                 5                149
D27V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      1   12
  15Q GAIN WILD-TYPE   75  221
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                 1                 75
  YES               12                221
D27V8, continuous
D27V9, continuous
D27V10, multiclass
                                             clus
vv                                            15Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                5
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     2
  CURRENT SMOKER                                             2
  LIFELONG NON-SMOKER                                        3
                                             clus
vv                                            15Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 76
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      54
  CURRENT SMOKER                                              95
  LIFELONG NON-SMOKER                                         61
D27V11, continuous

Clustering(28) Variable = 16p gain mutation analysis
D28V1, survival
                    sevent
clus2                  0   1
  16P GAIN MUTATED    13   7
  16P GAIN WILD-TYPE 172 114
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                20                286 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 7                114 
$`16P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-6868 TCGA-BA-6869 TCGA-CN-4737 TCGA-CN-6013 TCGA-CQ-5329 
        9.30         5.00         8.02         7.89         5.06        27.65 
TCGA-CR-7390 TCGA-CV-5978 TCGA-CV-6941 TCGA-CV-7091 TCGA-CV-7243 TCGA-CV-7245 
       29.82         7.07        11.24       111.12        31.33        26.20 
TCGA-CV-7255 TCGA-CV-7409 TCGA-CV-7423 TCGA-CV-7433 TCGA-CX-7086 TCGA-D6-6516 
        2.10        17.82       100.54        19.73         7.76        10.68 
TCGA-DQ-5625 TCGA-IQ-7631 
       34.78         4.01 

$`16P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        23.61        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       14.04        14.33         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.13        12.99        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61         6.18         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 
       39.68        21.50         2.93        38.89        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       33.07        16.70        22.78        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        12.89        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
       33.11        43.23        40.96        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       21.86        26.43       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      126.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7247 
      114.94        56.68         4.73        47.47        36.00        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       17.10        95.34         4.96        11.87        47.97        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       18.41        58.06        35.54       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       84.49         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 
       10.39        10.55        27.22        13.25         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5629 
        2.53         5.00         5.03         4.18        37.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        0.99         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7632 
        1.45        22.75         5.26         3.72 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              2.10               0.07 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
            111.12             210.94 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             10.96              14.33 
[1] "2.1 - 111.1 (11.0)" "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
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"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      5   15
  16P GAIN WILD-TYPE   79  210
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  FEMALE                5                 79
  MALE                 15                210
D28V4, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  T1                2                 23
  T2                5                 72
  T3                4                 59
  T4                7                 94
D28V5, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  N0               10                 92
  N1                2                 30
  N2                3                 95
  N3                2                  3
D28V6, multiclass
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  I                  2                 16
  II                 3                 44
  III                5                 37
  IV                 8                146
D28V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      4   16
  16P GAIN WILD-TYPE   72  217
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                 4                 72
  YES               16                217
D28V8, continuous
D28V9, continuous
D28V10, multiclass
                                             clus
vv                                            16P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                4
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     2
  CURRENT SMOKER                                             8
  LIFELONG NON-SMOKER                                        5
                                             clus
vv                                            16P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 77
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      54
  CURRENT SMOKER                                              89
  LIFELONG NON-SMOKER                                         59
D28V11, continuous

Clustering(29) Variable = 16q gain mutation analysis
D29V1, survival
                    sevent
clus2                  0   1
  16Q GAIN MUTATED    14  12
  16Q GAIN WILD-TYPE 171 109
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                26                280 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                12                109 
$`16Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-6868 TCGA-CN-4737 TCGA-CN-6013 TCGA-CN-6989 TCGA-CQ-5329 
        9.30         5.00         7.89         5.06         5.82        27.65 
TCGA-CR-7390 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-7091 TCGA-CV-7099 
       29.82        33.11         7.07        43.23       111.12         7.99 
TCGA-CV-7102 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7406 
        1.84        21.76        71.21        31.33        26.20        58.06 
TCGA-CV-7409 TCGA-CV-7415 TCGA-CV-7423 TCGA-CV-7433 TCGA-D6-6516 TCGA-DQ-5631 
       17.82        22.85       100.54        19.73        10.68        18.02 
TCGA-HD-8314 TCGA-IQ-7631 
        1.45         4.01 

$`16Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       57.44         8.02        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        23.61        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       37.87        14.04        14.33         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       17.16        12.13        12.99        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        4.70         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6992 
        9.07         6.61         6.18         7.36         1.38         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 
       39.68        21.50         2.93        38.89        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       33.07        16.70        22.78        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        12.89        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 
       18.81        12.66         9.01         5.23        52.31        12.89 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 
        2.10        36.13        18.41        35.54       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        25.02        25.94         0.07        34.09 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       84.49         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 
       10.39        10.55         7.76        27.22        13.25         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        7.82         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       34.78        16.96        15.68        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       11.84         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        0.46         0.99         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7632 
        1.81        22.75         5.26         3.72 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              1.45               0.07 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
            111.12             210.94 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
            18.875             13.955 
[1] "1.4 - 111.1 (18.9)" "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      7   19
  16Q GAIN WILD-TYPE   77  206
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  FEMALE                7                 77
  MALE                 19                206
D29V4, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  T1                2                 23
  T2                9                 68
  T3                4                 59
  T4                8                 93
D29V5, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  N0                8                 94
  N1                1                 31
  N2                9                 89
  N3                2                  3
D29V6, multiclass
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  I                  2                 16
  II                 6                 41
  III                2                 40
  IV                13                141
D29V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      6   20
  16Q GAIN WILD-TYPE   70  213
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                 6                 70
  YES               20                213
D29V8, continuous
D29V9, continuous
D29V10, multiclass
                                             clus
vv                                            16Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                7
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                             5
  LIFELONG NON-SMOKER                                        6
                                             clus
vv                                            16Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 74
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      51
  CURRENT SMOKER                                              92
  LIFELONG NON-SMOKER                                         58
D29V11, continuous

Clustering(30) Variable = 17p gain mutation analysis
D30V1, survival
                    sevent
clus2                  0   1
  17P GAIN MUTATED     9   9
  17P GAIN WILD-TYPE 176 112
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                18                288 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 9                112 
$`17P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-6872 TCGA-CN-6023 TCGA-CQ-5329 TCGA-CQ-6229 TCGA-CR-5247 
        9.30        12.99         6.18        27.65        26.76        11.77 
TCGA-CR-6467 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5440 TCGA-CV-5977 TCGA-CV-6933 
       58.42       135.29       129.21        89.82        33.11        90.08 
TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6962 TCGA-CV-7095 TCGA-CV-7414 
       11.24        15.06        30.05         4.14        18.81         0.46 

$`17P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 
       57.44         5.00         8.02        14.79         2.07         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        23.61        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       37.87        14.04        14.33         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 
        4.41         3.19         9.07         6.61         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 
       14.96        33.07        16.70        22.78        84.23        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       37.87        26.24        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       48.36        17.16       108.33        47.28        19.20        17.95 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       17.75        57.07        48.59         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       13.32        24.43         5.88         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 
       20.52         4.70        21.86        26.43       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       12.03        42.35         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 
        7.13         8.38        28.31         2.50        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
      111.12        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
        2.10        36.13        18.41        58.06        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
      210.94        89.33         9.67        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 
        2.53         5.00         5.03         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       11.84         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        0.46         0.99         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.81         1.45        22.75         5.26         4.01         3.72 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              0.46               0.07 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
            135.29             210.94 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
            22.785             13.955 
[1] "0.5 - 135.3 (22.8)" "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
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"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
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"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      2   16
  17P GAIN WILD-TYPE   82  209
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  FEMALE                2                 82
  MALE                 16                209
D30V4, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  T1                0                 25
  T2                4                 73
  T3                7                 56
  T4                5                 96
D30V5, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  N0                5                 97
  N1                2                 30
  N2                7                 91
  N3                0                  5
D30V6, multiclass
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  I                  0                 18
  II                 3                 44
  III                5                 37
  IV                 8                146
D30V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      5   13
  17P GAIN WILD-TYPE   71  220
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                 5                 71
  YES               13                220
D30V8, continuous
D30V9, continuous
D30V10, multiclass
                                             clus
vv                                            17P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                7
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             5
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            17P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 74
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      52
  CURRENT SMOKER                                              92
  LIFELONG NON-SMOKER                                         62
D30V11, continuous

Clustering(31) Variable = 17q gain mutation analysis
D31V1, survival
                    sevent
clus2                  0   1
  17Q GAIN MUTATED    10  10
  17Q GAIN WILD-TYPE 175 111
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                20                286 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                10                111 
$`17Q GAIN MUTATED`
TCGA-BA-6872 TCGA-CN-6023 TCGA-CN-6988 TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-6473 
       12.99         6.18         1.38        11.77        58.42        36.99 
TCGA-CR-7390 TCGA-CR-7399 TCGA-CV-5430 TCGA-CV-5440 TCGA-CV-5977 TCGA-CV-6933 
       29.82         5.92       135.29        89.82        33.11        90.08 
TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6962 TCGA-CV-7102 
       11.24        15.06        30.05         6.08         4.14         1.84 
TCGA-CV-7250 TCGA-CV-7424 
       95.34        14.86 

$`17Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 
       20.98        37.87        14.04        14.33         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        6.81         7.50         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 
        1.48         4.41         3.19         9.07         6.61         7.36 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
        4.21        14.96        26.76        33.07        16.70        22.78 
TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 
       84.23        54.64        37.87        26.24        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       34.52        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        12.89        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
       30.54         7.10         5.13        35.41        29.92        48.36 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       17.75        57.07        48.59         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       13.32        24.43         5.88         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 
       20.52         4.70        21.86        26.43       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       12.03        42.35        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
        8.38        28.31         2.50        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 
       18.81        12.66         7.99         9.01         5.23        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       17.10         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        58.06        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
       34.09       100.54        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        5.03         4.18        37.78        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       18.02        14.04        18.90        21.73        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 
       12.13        12.10        10.65         1.15         0.46         0.99 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
       22.75         5.26         4.01         3.72 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              1.38               0.07 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
            135.29             210.94 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             14.96              14.04 
[1] "1.4 - 135.3 (15.0)" "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D31V2, continuous
D31V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      3   17
  17Q GAIN WILD-TYPE   81  208
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  FEMALE                3                 81
  MALE                 17                208
D31V4, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  T1                0                 25
  T2                1                 76
  T3                9                 54
  T4                7                 94
D31V5, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  N0                3                 99
  N1                2                 30
  N2               11                 87
  N3                0                  5
D31V6, multiclass
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  I                  0                 18
  II                 0                 47
  III                3                 39
  IV                14                140
D31V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      5   15
  17Q GAIN WILD-TYPE   71  218
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                 5                 71
  YES               15                218
D31V8, continuous
D31V9, continuous
D31V10, multiclass
                                             clus
vv                                            17Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                9
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                             6
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            17Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 72
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      51
  CURRENT SMOKER                                              91
  LIFELONG NON-SMOKER                                         64
D31V11, continuous

Clustering(32) Variable = 18p gain mutation analysis
D32V1, survival
                    sevent
clus2                  0   1
  18P GAIN MUTATED    26  23
  18P GAIN WILD-TYPE 159  98
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                49                257 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                23                 98 
$`18P GAIN MUTATED`
TCGA-BA-4076 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-4223 
       13.64        57.44         8.02         2.07         3.72        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7870 TCGA-CN-5366 TCGA-CN-6012 
        9.04         4.60        18.31        37.87        11.84         4.70 
TCGA-CN-6988 TCGA-CQ-5332 TCGA-CQ-6227 TCGA-CR-6467 TCGA-CR-6482 TCGA-CR-6493 
        1.38        10.42         4.21        58.42        11.34         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7370 TCGA-CR-7390 TCGA-CR-7402 TCGA-CV-5432 
       47.18        39.12         3.42        29.82        29.92       129.21 
TCGA-CV-5434 TCGA-CV-5441 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6433 TCGA-CV-6441 
      108.33        87.55        57.07        33.11        13.32         5.88 
TCGA-CV-6935 TCGA-CV-6941 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6962 
        9.70        11.24        12.03        15.06        30.05         4.14 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7253 TCGA-CV-7255 
        5.23         1.84        31.33        18.97        11.87         2.10 
TCGA-CV-7409 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7440 TCGA-DQ-5631 TCGA-DQ-7590 
       17.82         7.13        16.60        21.99        18.02        21.73 
TCGA-DQ-7595 
       10.65 

$`18P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4227 
        5.00        14.79        12.99         7.76         6.12         4.37 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 
       10.19        17.59        13.87        23.61        20.98        14.04 
TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       14.33         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
        8.28        16.21        11.54        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 
       13.58         9.01         6.81         7.50         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        6.18         7.36         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 
        2.93        38.89        27.65        29.46        33.80        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
       13.25        14.96        26.76        33.07        16.70        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 
       84.23        11.77        54.64        37.87        26.24        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       11.90        10.22        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 
       15.75        47.34        40.90        35.84         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 
       17.13        32.78        47.01        27.02        12.89        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5435 
        5.92        35.41        48.36       135.29        17.16        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       19.20        17.95        89.82        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 
       17.06        13.35        17.75        48.59         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 
       40.96        24.43        90.08         2.14         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 
        4.70        21.86        26.43       126.08        19.79        42.35 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
       28.31         2.50        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
       12.66         7.99         9.01        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 
       36.00        26.20        17.10        95.34         4.96        47.97 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 
       36.13        18.41        58.06        35.54       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7438 
        3.48        16.27        84.49        19.73       142.49         6.38 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 
       37.78        34.78        16.96        15.68        14.04        18.90 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-F7-7848 TCGA-F7-8298 
       11.84         9.83        12.13        12.10         1.15         0.46 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        0.99         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.45        22.75         5.26         4.01         3.72 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              1.38               0.07 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            129.21             210.94 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             13.32              14.33 
[1] "1.4 - 129.2 (13.3)" "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
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"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      4   46
  18P GAIN WILD-TYPE   80  179
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  FEMALE                4                 80
  MALE                 46                179
D32V4, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  T1                0                 25
  T2                9                 68
  T3               16                 47
  T4               15                 86
D32V5, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  N0               14                 88
  N1                3                 29
  N2               17                 81
  N3                1                  4
D32V6, multiclass
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  I                  0                 18
  II                 4                 43
  III               11                 31
  IV                25                129
D32V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      9   41
  18P GAIN WILD-TYPE   67  192
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                 9                 67
  YES               41                192
D32V8, continuous
D32V9, continuous
D32V10, multiclass
                                             clus
vv                                            18P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               16
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                            18
  LIFELONG NON-SMOKER                                        9
                                             clus
vv                                            18P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 65
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      51
  CURRENT SMOKER                                              79
  LIFELONG NON-SMOKER                                         55
D32V11, continuous

Clustering(33) Variable = 18q gain mutation analysis
D33V1, survival
                    sevent
clus2                  0   1
  18Q GAIN MUTATED    15   5
  18Q GAIN WILD-TYPE 170 116
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                20                286 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 5                116 
$`18Q GAIN MUTATED`
TCGA-BA-5559 TCGA-BA-6871 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7870 
       57.44         2.07        95.05         4.60        18.31        37.87 
TCGA-CN-6012 TCGA-CN-6024 TCGA-CR-6467 TCGA-CR-6482 TCGA-CR-7367 TCGA-CR-7370 
        4.70         7.36        58.42        11.34        47.34         3.42 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-6433 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-7103 
      129.21       108.33        13.32        15.06        30.05        52.31 
TCGA-CV-7406 TCGA-DQ-7590 
       58.06        21.73 

$`18Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       53.75         5.00         8.02        14.79        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-7861 TCGA-BB-7862 
        7.76         6.12         9.04         4.37        10.19        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 
       13.87        23.61        20.98        14.04        14.33         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       13.55        10.19         4.67         6.38        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        9.01         6.81         7.50         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 
       13.25         4.21        14.96        26.76        33.07        16.70 
TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       22.78        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
        6.02        11.90        10.22        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 
       11.51        15.75         9.27        47.18        39.12        40.90 
TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
       35.84         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 
       29.92        48.36       135.29        17.16        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
        7.07        43.23        40.96        24.43         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       36.13        18.41        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        5.00         5.03         4.18        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 
       15.68        18.02        14.04        18.90        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 
       12.13        12.10        10.65         1.15         0.46         0.99 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
       22.75         5.26         4.01         3.72 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              2.07               0.07 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
            129.21             210.94 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
            25.890             13.755 
[1] "2.1 - 129.2 (25.9)" "0.1 - 210.9 (13.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
[1] "hr=" "2.5"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      2   18
  18Q GAIN WILD-TYPE   82  207
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  FEMALE                2                 82
  MALE                 18                207
D33V4, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  T1                0                 25
  T2                5                 72
  T3                4                 59
  T4                5                 96
D33V5, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  N0                4                 98
  N1                2                 30
  N2                7                 91
  N3                0                  5
D33V6, multiclass
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  I                  0                 18
  II                 2                 45
  III                3                 39
  IV                 9                145
D33V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      5   15
  18Q GAIN WILD-TYPE   71  218
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                 5                 71
  YES               15                218
D33V8, continuous
D33V9, continuous
D33V10, multiclass
                                             clus
vv                                            18Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                9
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     2
  CURRENT SMOKER                                             7
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            18Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 72
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      54
  CURRENT SMOKER                                              90
  LIFELONG NON-SMOKER                                         62
D33V11, continuous

Clustering(34) Variable = 19p gain mutation analysis
D34V1, survival
                    sevent
clus2                  0   1
  19P GAIN MUTATED    10   1
  19P GAIN WILD-TYPE 175 120
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                11                295 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 1                120 
$`19P GAIN MUTATED`
TCGA-BA-5559 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-7871 TCGA-CN-6021 TCGA-CN-6024 
       57.44        95.05         4.60        14.04         9.07         7.36 
TCGA-CQ-5323 TCGA-CR-6467 TCGA-CR-7389 TCGA-CV-5442 TCGA-CV-7245 
       48.16        58.42        12.89        76.47        26.20 

$`19P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       53.75         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 
        3.72         7.76         6.12         9.04         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        23.61        20.98        37.87 
TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       14.33         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.61         6.18         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5324 TCGA-CQ-5325 
        3.68         3.75         3.29         1.51        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 
       32.35        13.25         4.21        14.96        26.76        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       16.70        22.78        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       26.24        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 
       26.17        17.13        32.78        47.01        27.02        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       89.82        87.55        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
        2.10        36.13        18.41        58.06        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        7.82         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       34.78        16.96        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        1.15         0.46         0.99         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.02         1.81         1.45        22.75         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              4.60               0.07 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             95.05             210.94 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             26.20              14.04 
[1] "4.6 - 95.0 (26.2)"  "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
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"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
[1] "hr=" "6.4"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      3    8
  19P GAIN WILD-TYPE   81  217
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  FEMALE                3                 81
  MALE                  8                217
D34V4, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  T1                1                 24
  T2                2                 75
  T3                0                 63
  T4                4                 97
D34V5, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  N0                2                100
  N1                1                 31
  N2                4                 94
  N3                0                  5
D34V6, multiclass
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  I                  1                 17
  II                 0                 47
  III                1                 41
  IV                 5                149
D34V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      3    8
  19P GAIN WILD-TYPE   73  225
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                 3                 73
  YES                8                225
D34V8, continuous
D34V9, continuous
D34V10, multiclass
                                             clus
vv                                            19P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                5
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     1
  CURRENT SMOKER                                             3
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            19P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 76
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      55
  CURRENT SMOKER                                              94
  LIFELONG NON-SMOKER                                         62
D34V11, continuous

Clustering(35) Variable = 19q gain mutation analysis
D35V1, survival
                    sevent
clus2                  0   1
  19Q GAIN MUTATED    13   8
  19Q GAIN WILD-TYPE 172 113
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                21                285 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 8                113 
$`19Q GAIN MUTATED`
TCGA-BA-5153 TCGA-BA-5559 TCGA-BB-4223 TCGA-BB-4225 TCGA-CN-6021 TCGA-CN-6024 
       57.90        57.44        95.05         4.60         9.07         7.36 
TCGA-CQ-5324 TCGA-CR-6467 TCGA-CR-7367 TCGA-CR-7389 TCGA-CV-5442 TCGA-CV-6937 
       39.68        58.42        47.34        12.89        76.47        20.52 
TCGA-CV-7243 TCGA-CV-7253 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7435 
       31.33        11.87        58.06        35.54        17.82       142.49 
TCGA-CV-7437 TCGA-DQ-7592 TCGA-IQ-7631 
       16.60         9.83         4.01 

$`19Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        27.78         6.12         5.88         7.96        53.75 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        5.00         8.02        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        7.76         6.12         9.04         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.59        13.87        23.61        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       14.33         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.61         6.18         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5325 
        3.68         3.75         3.29         1.51        48.16        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 
       32.35        13.25         4.21        14.96        26.76        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       16.70        22.78        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       26.24        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       39.12        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 
       17.13        32.78        47.01        27.02        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       87.55        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       57.07        48.59        33.11         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       13.32        24.43         5.88        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
        5.46         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
        4.73        47.47        36.00        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
       95.34         4.96        47.97         2.10        36.13        18.41 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
        7.13         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        5.00         5.03         4.18        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 
       12.13        12.10        10.65         1.15         0.46         0.99 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7632 
       22.75         5.26         3.72 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              4.01               0.07 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            142.49             210.94 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             31.33              13.64 
[1] "4.0 - 142.5 (31.3)" "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
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        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      5   16
  19Q GAIN WILD-TYPE   79  209
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  FEMALE                5                 79
  MALE                 16                209
D35V4, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  T1                0                 25
  T2                9                 68
  T3                2                 61
  T4                5                 96
D35V5, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  N0                5                 97
  N1                3                 29
  N2                4                 94
  N3                1                  4
D35V6, multiclass
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  I                  0                 18
  II                 5                 42
  III                3                 39
  IV                 7                147
D35V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      4   17
  19Q GAIN WILD-TYPE   72  216
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                 4                 72
  YES               17                216
D35V8, continuous
D35V9, continuous
D35V10, multiclass
                                             clus
vv                                            19Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                7
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     1
  CURRENT SMOKER                                             5
  LIFELONG NON-SMOKER                                        6
                                             clus
vv                                            19Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 74
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      55
  CURRENT SMOKER                                              92
  LIFELONG NON-SMOKER                                         58
D35V11, continuous

Clustering(36) Variable = 20p gain mutation analysis
D36V1, survival
                    sevent
clus2                  0   1
  20P GAIN MUTATED    44  20
  20P GAIN WILD-TYPE 141 101
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                64                242 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                20                101 
$`20P GAIN MUTATED`
TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-6868 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4224 
        9.07         8.15         5.00        12.99         7.76         9.04 
TCGA-BB-4225 TCGA-BB-7872 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-4739 
        4.60        14.33        11.28        12.59         7.89        11.44 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5360 TCGA-CN-5374 TCGA-CN-6012 TCGA-CN-6013 
       28.77        13.05        28.47         9.01         4.70         5.06 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CQ-5329 TCGA-CQ-5330 
        6.18         7.36         1.38         5.82        27.65        29.46 
TCGA-CQ-6220 TCGA-CQ-6224 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-7365 
       32.35        32.35        84.23        11.77        58.42        39.12 
TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7399 TCGA-CV-5430 TCGA-CV-5434 
       47.34         3.42        24.95         5.92       135.29       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5973 
       47.28        19.20        76.47        64.73        13.35        57.07 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6962 
       12.03        42.35        65.82         7.13         8.38         4.14 
TCGA-CV-7090 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7255 
      126.12        21.76        71.21        31.33        26.20         2.10 
TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7437 TCGA-CX-7082 TCGA-CX-7086 TCGA-D6-6516 
       25.02       100.54        16.60        10.39         7.76        10.68 
TCGA-D6-6517 TCGA-DQ-5624 TCGA-DQ-7591 TCGA-HD-8314 
        8.22        37.78        11.84         1.45 

$`20P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5151 TCGA-BA-5152 
       15.16         9.30        13.64        37.28         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 
        8.02        14.79         2.07         3.72         6.12        95.05 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       20.98        37.87        14.04         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4733 TCGA-CN-4735 
        4.67         6.38        10.68         5.46        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       12.99        14.33        26.63         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       12.39         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6016 
       12.49         8.52        13.58         6.81         7.50         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5331 
       48.16        39.68        21.50         2.93        38.89        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 
       10.42        11.21         4.21        28.60        32.88        34.75 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 
       13.25         4.21        14.96        26.76        33.07        16.70 
TCGA-CQ-7068 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 
       22.78        54.64        37.87        26.24        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 
       15.75         9.27        47.18        40.90        35.84         3.06 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 
        5.13        35.41        29.92        48.36        17.16       129.21 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5971 
       17.95        89.82        87.55        84.39        17.06        17.75 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 
       19.79        15.06        30.05         6.08        53.92        10.98 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
       28.31         2.50        64.80       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        58.06        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 
       89.33         9.67         0.46        22.85        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
       34.09        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 
       16.27        84.49        19.73         7.13       142.49         6.38 
TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6823 TCGA-D6-6824 
       21.99        10.55        27.22        13.25         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        5.00         5.03         4.18        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7592 TCGA-DQ-7593 
       18.02        14.04        18.90        21.73         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 
       12.10        10.65         1.15         0.46         0.99         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HL-7533 TCGA-IQ-7630 
        0.16         0.82         1.02         1.81        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              1.38               0.07 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            135.29             210.94 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            13.020             14.825 
[1] "1.4 - 135.3 (13.0)" "0.1 - 210.9 (14.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
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"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     15   49
  20P GAIN WILD-TYPE   69  176
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  FEMALE               15                 69
  MALE                 49                176
D36V4, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  T1                3                 22
  T2               13                 64
  T3               13                 50
  T4               25                 76
D36V5, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  N0               14                 88
  N1                8                 24
  N2               24                 74
  N3                1                  4
D36V6, multiclass
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  I                  3                 15
  II                 5                 42
  III                9                 33
  IV                37                117
D36V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     24   40
  20P GAIN WILD-TYPE   52  193
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO                24                 52
  YES               40                193
D36V8, continuous
D36V9, continuous
D36V10, multiclass
                                             clus
vv                                            20P GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               19
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     8
  CURRENT SMOKER                                            18
  LIFELONG NON-SMOKER                                       17
                                             clus
vv                                            20P GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 62
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      48
  CURRENT SMOKER                                              79
  LIFELONG NON-SMOKER                                         47
D36V11, continuous

Clustering(37) Variable = 20q gain mutation analysis
D37V1, survival
                    sevent
clus2                  0   1
  20Q GAIN MUTATED    42  27
  20Q GAIN WILD-TYPE 143  94
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                69                237 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                27                 94 
$`20Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-6868 TCGA-BA-6872 TCGA-BA-7269 
        9.30         9.07         8.15         5.00        12.99         7.76 
TCGA-BB-4225 TCGA-BB-7864 TCGA-BB-7872 TCGA-CN-4725 TCGA-CN-4730 TCGA-CN-4731 
        4.60        23.61        14.33        10.19        11.28        12.59 
TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5374 TCGA-CN-6011 
        7.89        11.44        28.77        13.05         9.01         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 
        4.70         5.06         6.18         1.38         5.82         3.91 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-6220 TCGA-CQ-6224 TCGA-CR-5247 TCGA-CR-6467 
       27.65        29.46        32.35        32.35        11.77        58.42 
TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7372 TCGA-CV-5430 TCGA-CV-5432 
        9.27        39.12        47.34        24.95       135.29       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5973 
      108.33        47.28        19.20        76.47        64.73        57.07 
TCGA-CV-6003 TCGA-CV-6936 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6954 
       40.96         5.46        12.03        42.35        30.05        65.82 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7097 
        7.13         8.38        28.31         4.14       126.12        12.66 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7255 TCGA-CV-7409 
       21.76        71.21        31.33        26.20         2.10        17.82 
TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7437 TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6823 
       25.02       100.54        16.60         7.76        10.68         7.82 
TCGA-DQ-5624 TCGA-DQ-5631 TCGA-HD-8314 
       37.78        18.02         1.45 

$`20Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
       15.16        13.64        37.28         6.25        27.78        57.90 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 
        6.12         5.88         7.96        53.75        57.44         8.02 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       14.79         2.07         3.72         6.12        95.05         9.04 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7866 
        4.37        18.31        10.19        17.59        13.87        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 
       37.87        14.04         6.31        13.55         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 
       10.68         5.46        17.16        12.13        12.99        14.33 
TCGA-CN-4740 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       26.63         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        8.52        13.58         6.81         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6992 
        4.41         3.19         9.07         6.61         7.36         2.73 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       21.50         2.93        38.89        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 
        4.21        28.60        32.88        34.75        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 
       14.96        26.76        33.07        16.70        22.78        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       54.64        37.87        26.24        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7373 
       47.18        40.90        35.84         3.42         3.06        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5439 
        5.92        35.41        29.92        48.36        17.16        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       89.82        87.55        84.39        17.06        13.35        17.75 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 
       48.59        33.11         7.07        43.23        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 
        5.88        90.08         2.14         9.70        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6950 
       21.86        26.43        11.24       126.08        19.79        15.06 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7091 
        6.08        53.92        10.98         2.50        64.80       111.12 
TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       18.81         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       12.89        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       36.00        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 
       47.97        36.13        18.41        58.06        35.54       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 
       89.33         9.67         0.46        22.85        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
       34.09        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 
       16.27        84.49        19.73         7.13       142.49         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 
       21.99        10.39        10.55        27.22        13.25         8.22 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5625 TCGA-DQ-5629 
        2.53         5.00         5.03         4.18        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       15.68        14.04        18.90        21.73        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 
       12.13        12.10        10.65         1.15         0.46         0.99 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HL-7533 
        0.07         0.16         0.82         1.02         1.81        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              1.38               0.07 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            135.29             210.94 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
             14.33              14.04 
[1] "1.4 - 135.3 (14.3)" "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
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  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     14   55
  20Q GAIN WILD-TYPE   70  170
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  FEMALE               14                 70
  MALE                 55                170
D37V4, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  T1                3                 22
  T2               16                 61
  T3               15                 48
  T4               27                 74
D37V5, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  N0               19                 83
  N1                9                 23
  N2               23                 75
  N3                2                  3
D37V6, multiclass
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  I                  3                 15
  II                 8                 39
  III               12                 30
  IV                38                116
D37V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     26   43
  20Q GAIN WILD-TYPE   50  190
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO                26                 50
  YES               43                190
D37V8, continuous
D37V9, continuous
D37V10, multiclass
                                             clus
vv                                            20Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               22
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     9
  CURRENT SMOKER                                            18
  LIFELONG NON-SMOKER                                       18
                                             clus
vv                                            20Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 59
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      47
  CURRENT SMOKER                                              79
  LIFELONG NON-SMOKER                                         46
D37V11, continuous

Clustering(38) Variable = 21q gain mutation analysis
D38V1, survival
                    sevent
clus2                  0   1
  21Q GAIN MUTATED     6   3
  21Q GAIN WILD-TYPE 179 118
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 9                297 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 3                118 
$`21Q GAIN MUTATED`
TCGA-BB-4225 TCGA-CN-4727 TCGA-CR-6467 TCGA-CR-6478 TCGA-CR-7370 TCGA-CV-5432 
        4.60         6.38        58.42         6.02         3.42       129.21 
TCGA-CV-7414 TCGA-CV-7415 TCGA-HD-8314 
        0.46        22.85         1.45 

$`21Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 
       20.98        37.87        14.04        14.33         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
       10.19         4.67        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 
       13.25         4.21        14.96        26.76        33.07        16.70 
TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       22.78        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       40.90        35.84         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 
       35.41        29.92        48.36       135.29        17.16       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       47.28        19.20        17.95        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        58.06        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
       89.33         9.67        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        5.03         4.18        37.78        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       18.02        14.04        18.90        21.73        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 
       12.13        12.10        10.65         1.15         0.46         0.99 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HL-7533 
        0.07         0.16         0.82         1.02         1.81        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              0.46               0.07 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            129.21             210.94 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              6.02              14.33 
[1] "0.5 - 129.2 (6.0)"  "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
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        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
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        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
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        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
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        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      2    7
  21Q GAIN WILD-TYPE   82  218
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  FEMALE                2                 82
  MALE                  7                218
D38V4, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  T1                0                 25
  T2                1                 76
  T3                1                 62
  T4                3                 98
D38V5, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  N0                2                100
  N1                1                 31
  N2                2                 96
  N3                0                  5
D38V6, multiclass
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  I                  0                 18
  II                 0                 47
  III                2                 40
  IV                 3                151
D38V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      2    7
  21Q GAIN WILD-TYPE   74  226
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                 2                 74
  YES                7                226
D38V8, continuous
D38V9, continuous
D38V10, multiclass
                                             clus
vv                                            21Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                6
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     1
  CURRENT SMOKER                                             0
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            21Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 75
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      55
  CURRENT SMOKER                                              97
  LIFELONG NON-SMOKER                                         63
D38V11, continuous

Clustering(39) Variable = 22q gain mutation analysis
D39V1, survival
                    sevent
clus2                  0   1
  22Q GAIN MUTATED    20  17
  22Q GAIN WILD-TYPE 165 104
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                37                269 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                17                104 
$`22Q GAIN MUTATED`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-7269 TCGA-BB-7870 
       15.16         9.07         6.12         7.96         7.76        37.87 
TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6024 TCGA-CN-6994 TCGA-CQ-5326 TCGA-CQ-5332 
        4.70         6.61         7.36         3.91         2.93        10.42 
TCGA-CQ-6221 TCGA-CR-6471 TCGA-CR-6474 TCGA-CR-6482 TCGA-CR-7370 TCGA-CR-7389 
       32.88        39.52        18.51        11.34         3.42        12.89 
TCGA-CR-7390 TCGA-CR-7397 TCGA-CR-7401 TCGA-CV-5434 TCGA-CV-5970 TCGA-CV-5978 
       29.82         7.10        35.41       108.33        13.35         7.07 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-7090 TCGA-CV-7102 TCGA-CV-7178 TCGA-CV-7245 
       26.43        11.24       126.12         1.84        71.21        26.20 
TCGA-CV-7254 TCGA-CV-7407 TCGA-CV-7424 TCGA-CV-7437 TCGA-DQ-5625 TCGA-DQ-5629 
       47.97        35.54        14.86        16.60        34.78        16.96 
TCGA-DQ-7589 
       18.90 

$`22Q GAIN WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        37.28         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 
       57.90         5.88        53.75        57.44         5.00         8.02 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 
       14.79         2.07        12.99         3.72         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        9.04         4.60         4.37        18.31        10.19        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 
       13.87        23.61        20.98        14.04        14.33         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       13.55        10.19         4.67         6.38        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6017 TCGA-CN-6018 
        9.01         6.81         7.50         5.06         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 
        4.41         3.19         9.07         6.61         6.18         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        5.82         2.73         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       48.16        39.68        21.50        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 
       33.80        11.21         4.21        28.60        32.35        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 
       32.35        13.25         4.21        14.96        26.76        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       16.70        22.78        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6477 
       26.24        58.42        50.01        34.52        36.99        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
        6.02        11.90        10.22        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       40.90        35.84         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       47.01        27.02        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
       30.54         5.13         5.92        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
       17.16       129.21        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 
       87.55        76.47        84.39        64.73        17.06        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       57.07        48.59        33.11        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       20.52         4.70        21.86       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
       64.80       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 
        5.23        52.31        12.89        21.76        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 
       56.68         4.73        47.47        36.00        31.33        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7261 
       17.10        95.34         4.96        11.87         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       18.41        58.06        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
      100.54        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 
       84.49        19.73         7.13       142.49         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 
       37.78        15.68        18.02        14.04        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        0.99         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.45        22.75         5.26         4.01         3.72 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              1.84               0.07 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
            126.12             210.94 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             14.86              14.04 
[1] "1.8 - 126.1 (14.9)" "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      8   30
  22Q GAIN WILD-TYPE   76  195
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  FEMALE                8                 76
  MALE                 30                195
D39V4, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  T1                2                 23
  T2               10                 67
  T3                7                 56
  T4               12                 89
D39V5, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  N0                7                 95
  N1                5                 27
  N2               13                 85
  N3                1                  4
D39V6, multiclass
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  I                  1                 17
  II                 4                 43
  III                5                 37
  IV                20                134
D39V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      9   29
  22Q GAIN WILD-TYPE   67  204
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                 9                 67
  YES               29                204
D39V8, continuous
D39V9, continuous
D39V10, multiclass
                                             clus
vv                                            22Q GAIN MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               13
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     6
  CURRENT SMOKER                                            14
  LIFELONG NON-SMOKER                                        5
                                             clus
vv                                            22Q GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 68
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      50
  CURRENT SMOKER                                              83
  LIFELONG NON-SMOKER                                         59
D39V11, continuous

Clustering(40) Variable = Xq gain mutation analysis
D40V1, survival
                   sevent
clus2                 0   1
  XQ GAIN MUTATED     9  12
  XQ GAIN WILD-TYPE 176 109
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               21               285 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               12               109 
$`XQ GAIN MUTATED`
TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-6872 TCGA-BB-4225 TCGA-BB-4227 TCGA-CV-5970 
       37.28         8.15        12.99         4.60         4.37        13.35 
TCGA-CV-5977 TCGA-CV-6936 TCGA-CV-6951 TCGA-CV-6959 TCGA-CV-7102 TCGA-CV-7178 
       33.11         5.46        30.05         8.38         1.84        71.21 
TCGA-CV-7254 TCGA-CV-7409 TCGA-CV-7415 TCGA-CV-7437 TCGA-CX-7086 TCGA-D6-6516 
       47.97        17.82        22.85        16.60         7.76        10.68 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-7592 
       34.78        16.96         9.83 

$`XQ GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 
       15.16         9.30        13.64         9.07         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 TCGA-BA-7269 
        5.00         8.02        14.79         2.07         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        6.12        95.05         9.04        18.31        10.19        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       13.87        23.61        20.98        37.87        14.04        14.33 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       13.58         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61         6.18         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       33.80        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 
       26.76        33.07        16.70        22.78        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 
       76.47        84.39        64.73        17.06        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       48.59         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 
        5.88        90.08         2.14         9.70        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       42.35        15.06         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        7.13        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       52.31        12.89        21.76        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7261 
       17.10        95.34         4.96        11.87         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       18.41        58.06        35.54       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
        0.46        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 
       84.49        19.73         7.13       142.49         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 
       10.39        10.55        27.22        13.25         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5630 
        2.53         5.00         5.03         4.18        37.78        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 
       18.02        14.04        18.90        21.73        11.84        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 
       12.10        10.65         1.15         0.46         0.99         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 
        0.16         0.82         1.02         1.81         1.45        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             1.84              0.07 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            71.21            210.94 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            13.35             14.33 
[1] "1.8 - 71.2 (13.3)"  "0.1 - 210.9 (14.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      4   17
  XQ GAIN WILD-TYPE   80  208
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  FEMALE               4                80
  MALE                17               208
D40V4, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  T1               1                24
  T2               2                75
  T3               5                58
  T4               8                93
D40V5, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  N0               3                99
  N1               1                31
  N2               9                89
  N3               1                 4
D40V6, multiclass
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  I                 1                17
  II                2                45
  III               2                40
  IV               11               143
D40V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      4   17
  XQ GAIN WILD-TYPE   72  216
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  NO                4                72
  YES              17               216
D40V8, continuous
D40V9, continuous
D40V10, multiclass
                                             clus
vv                                            XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                74
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    4                52
  CURRENT SMOKER                                            6                91
  LIFELONG NON-SMOKER                                       3                61
D40V11, continuous

Clustering(41) Variable = 1p loss mutation analysis
D41V1, survival
                   sevent
clus2                 0   1
  1P LOSS MUTATED     9   7
  1P LOSS WILD-TYPE 176 114
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               16               290 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                7               114 
$`1P LOSS MUTATED`
TCGA-BA-6871 TCGA-CN-5360 TCGA-CN-6012 TCGA-CN-6021 TCGA-CN-6024 TCGA-CN-6992 
        2.07        28.47         4.70         9.07         7.36         2.73 
TCGA-CN-6997 TCGA-CQ-6225 TCGA-CR-7370 TCGA-CR-7371 TCGA-CV-5434 TCGA-CV-5440 
        3.29        13.25         3.42         3.06       108.33        89.82 
TCGA-CV-6935 TCGA-CV-6962 TCGA-CV-7424 TCGA-D6-6516 
        9.70         4.14        14.86        10.68 

$`1P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 
       53.75        57.44         5.00         8.02        14.79        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 
       20.98        37.87        14.04        14.33         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        5.69        12.39         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        7.50         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 
        3.19         6.61         6.18         1.38         5.82         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.68         3.75         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 
       32.35         4.21        14.96        26.76        33.07        16.70 
TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       22.78        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7372 TCGA-CR-7373 
       39.12        47.34        40.90        35.84        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 
      129.21        47.28        19.20        17.95        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 
       24.43         5.88        90.08         2.14         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       36.00        31.33        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       58.06        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
      100.54        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       37.78        34.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 
       10.65         1.15         0.46         0.99         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 
        0.82         1.02         1.81         1.45        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             2.07              0.07 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           108.33            210.94 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            8.215            15.010 
[1] "2.1 - 108.3 (8.2)"  "0.1 - 210.9 (15.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      3   13
  1P LOSS WILD-TYPE   81  212
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  FEMALE               3                81
  MALE                13               212
D41V4, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  T1               1                24
  T2               0                77
  T3               7                56
  T4               5                96
D41V5, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  N0               3                99
  N1               1                31
  N2               8                90
  N3               0                 5
D41V6, multiclass
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  I                 1                17
  II                0                47
  III               2                40
  IV               10               144
D41V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      6   10
  1P LOSS WILD-TYPE   70  223
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO                6                70
  YES              10               223
D41V8, continuous
D41V9, continuous
D41V10, multiclass
                                             clus
vv                                            1P LOSS MUTATED 1P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                74
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                54
  CURRENT SMOKER                                            7                90
  LIFELONG NON-SMOKER                                       0                64
D41V11, continuous

Clustering(42) Variable = 2p loss mutation analysis
D42V1, survival
                   sevent
clus2                 0   1
  2P LOSS MUTATED     4   1
  2P LOSS WILD-TYPE 181 120
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                5               301 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                1               120 
$`2P LOSS MUTATED`
TCGA-BB-7861 TCGA-CN-6011 TCGA-CQ-6218 TCGA-CV-5973 TCGA-CV-7432 
       10.19         7.50        28.60        57.07        84.49 

$`2P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.60         4.37        18.31        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 
       20.98        37.87        14.04        14.33         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        6.81         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
        4.21        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
        4.21        14.96        26.76        33.07        16.70        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       13.35        17.75        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       47.97         2.10        36.13        18.41        58.06        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.02        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7433 
       56.48       156.49        54.90         3.48        16.27        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        7.82         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       34.78        16.96        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        1.15         0.46         0.99         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.02         1.81         1.45        22.75         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             7.50              0.07 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            84.49            210.94 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            28.60             14.04 
[1] "7.5 - 84.5 (28.6)"  "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
[1] "hr=" "2.8"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      2    3
  2P LOSS WILD-TYPE   82  222
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  FEMALE               2                82
  MALE                 3               222
D42V4, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  T1               1                24
  T2               1                76
  T3               2                61
  T4               1               100
D42V5, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  N0               3                99
  N1               1                31
  N2               1                97
  N3               0                 5
D42V6, multiclass
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  I                 0                18
  II                1                46
  III               2                40
  IV                2               152
D42V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      2    3
  2P LOSS WILD-TYPE   74  230
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  NO                2                74
  YES               3               230
D42V8, continuous
D42V9, continuous
D42V10, multiclass
                                             clus
vv                                            2P LOSS MUTATED 2P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3                78
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    0                56
  CURRENT SMOKER                                            1                96
  LIFELONG NON-SMOKER                                       1                63
D42V11, continuous

Clustering(43) Variable = 2q loss mutation analysis
D43V1, survival
                   sevent
clus2                 0   1
  2Q LOSS MUTATED     8   1
  2Q LOSS WILD-TYPE 177 120
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                9               297 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                1               120 
$`2Q LOSS MUTATED`
TCGA-BA-5152 TCGA-BA-6871 TCGA-BB-7861 TCGA-CR-6472 TCGA-CR-7371 TCGA-CR-7399 
       27.78         2.07        10.19        34.52         3.06         5.92 
TCGA-CR-7402 TCGA-CV-5973 TCGA-DQ-7593 
       29.92        57.07        12.13 

$`2Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       57.44         5.00         8.02        14.79        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       18.31        17.59        13.87        23.61        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       14.04        14.33         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
        4.21        14.96        26.76        33.07        16.70        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       50.01        39.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       40.90        35.84         3.42        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 
       29.85        29.52        30.54         7.10         5.13        35.41 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 
       64.73        17.06        13.35        17.75        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        40.96        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       36.00        31.33        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       58.06        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        5.03         4.18        37.78        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       18.02        14.04        18.90        21.73        11.84         9.83 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 
       12.10        10.65         1.15         0.46         0.99         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 
        0.16         0.82         1.02         1.81         1.45        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
             2.07              0.07 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
            57.07            210.94 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
            12.13             14.33 
[1] "2.1 - 57.1 (12.1)"  "0.1 - 210.9 (14.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
[1] "hr=" "3.1"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      3    6
  2Q LOSS WILD-TYPE   81  219
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  FEMALE               3                81
  MALE                 6               219
D43V4, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  T1               1                24
  T2               0                77
  T3               3                60
  T4               1               100
D43V5, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  N0               2               100
  N1               2                30
  N2               1                97
  N3               0                 5
D43V6, multiclass
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  I                 0                18
  II                0                47
  III               3                39
  IV                2               152
D43V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      1    8
  2Q LOSS WILD-TYPE   75  225
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  NO                1                75
  YES               8               225
D43V8, continuous
D43V9, continuous
[1] "Remove cluster labels:" "2Q LOSS MUTATED"       
clus
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                2               118 
       TCGA-BA-4077        TCGA-BA-4078        TCGA-BA-5151        TCGA-BA-5555 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-5556        TCGA-BA-6868        TCGA-BB-4225        TCGA-BB-4227 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7864        TCGA-CN-4723        TCGA-CN-4729 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4731        TCGA-CN-4736        TCGA-CN-4739        TCGA-CN-4740 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4741        TCGA-CN-5358        TCGA-CN-5367        TCGA-CN-5370 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5373        TCGA-CN-6011        TCGA-CN-6017        TCGA-CN-6019 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6023        TCGA-CN-6988        TCGA-CN-6994 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6997        TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5326        TCGA-CQ-5330        TCGA-CQ-5331        TCGA-CQ-5332 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5333        TCGA-CQ-6218        TCGA-CQ-6221        TCGA-CQ-6223 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CR-6467 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6482 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6493        TCGA-CR-7368        TCGA-CR-7370 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7373        TCGA-CR-7376        TCGA-CR-7385        TCGA-CR-7386 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7395        TCGA-CR-7397 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5444 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5977        TCGA-CV-6436 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6937        TCGA-CV-6943 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6960        TCGA-CV-6961 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097        TCGA-CV-7099 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7100        TCGA-CV-7102        TCGA-CV-7235        TCGA-CV-7245 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7406        TCGA-CV-7410        TCGA-CV-7414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7427        TCGA-CV-7430        TCGA-CV-7432 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CX-7082        TCGA-CX-7085        TCGA-D6-6516 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6825        TCGA-DQ-5629        TCGA-DQ-5630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-H7-7774        TCGA-HD-7754        TCGA-HL-7533 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
D43V10, multiclass
                                             clus
vv                                            2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               1                80
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    0                56
  CURRENT SMOKER                                            5                92
  LIFELONG NON-SMOKER                                       2                62
D43V11, continuous

Clustering(44) Variable = 3p loss mutation analysis
D44V1, survival
                   sevent
clus2                 0   1
  3P LOSS MUTATED    64  55
  3P LOSS WILD-TYPE 121  66
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              119               187 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               55                66 
$`3P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-5558 TCGA-BA-6869 
       15.16        13.64         9.07         6.12        53.75         8.02 
TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4224 TCGA-BB-7862 TCGA-BB-7870 
        2.07        12.99         7.76         9.04        17.59        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4725 TCGA-CN-4729 TCGA-CN-4735 TCGA-CN-4737 
       14.04        14.33        10.19         5.46        12.13         7.89 
TCGA-CN-5355 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 
        9.17        28.47         8.28        16.21        11.54        11.57 
TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6997 
       13.58         7.50         4.70         2.73         3.68         3.29 
TCGA-CN-6998 TCGA-CQ-5326 TCGA-CQ-5330 TCGA-CQ-5332 TCGA-CQ-6218 TCGA-CQ-6220 
        1.51         2.93        29.46        10.42        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-7065 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5250 TCGA-CR-6473 
       32.88        33.07        84.23        11.77        26.24        36.99 
TCGA-CR-6480 TCGA-CR-6482 TCGA-CR-6491 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7369 
       11.90        11.34        11.51         9.27        47.18        35.84 
TCGA-CR-7370 TCGA-CR-7374 TCGA-CR-7380 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7398 
        3.42         0.99        19.92        27.02        29.82         5.13 
TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 
       29.92       135.29       129.21       108.33        47.28        17.95 
TCGA-CV-5440 TCGA-CV-5970 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       89.82        13.35        48.59         7.07        43.23        40.96 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6941 TCGA-CV-6945 
        5.88         2.14         9.70         5.46        11.24        12.03 
TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-6961 
       42.35        30.05        65.82         7.13        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 
        4.14       111.12        18.81         7.99         9.01         1.84 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7252 TCGA-CV-7255 
       12.89        21.76        26.20        18.97         4.96         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7421 
       36.13        18.41         9.67         0.46        25.94         0.07 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CX-7082 
      100.54        14.86        54.90        16.27        84.49        10.39 
TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6825 TCGA-DQ-5629 
        7.76        10.68         8.22         7.82         5.00        16.96 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 
       18.02        14.04        18.90        11.84         9.83         1.15 
TCGA-F7-8298 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-8224 TCGA-IQ-7630 
        0.46         0.07         0.16         1.81         5.26 

$`3P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
        9.30        37.28         8.15         6.25        27.78        57.90 
TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6873 
        5.88         7.96        57.44         5.00        14.79         3.72 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        6.12        95.05         4.60         4.37        18.31        10.19 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 
       13.87        23.61        20.98         6.31        13.55         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 
        6.38        10.68        11.28        12.59        17.16        12.99 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 
       14.33        11.44        26.63        28.77        13.05         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5374 
        5.69        12.39        11.84        12.49         8.52         9.01 
TCGA-CN-6010 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        6.81         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6996 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        5.82         3.91         3.75        48.16        39.68        21.50 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6223 
       38.89        27.65        33.80        11.21         4.21        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7067 
       32.35        13.25         4.21        14.96        26.76        16.70 
TCGA-CQ-7068 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       22.78        54.64        37.87        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6481 TCGA-CR-6484 
       34.52        18.51        16.90         6.02        10.22        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
        7.66        12.46        15.75        39.12        47.34        40.90 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7382 
        3.06        24.95        29.23        31.96        34.06        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 
       17.13        32.78        47.01        12.89        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 
       29.85        29.52        30.54         7.10         5.92        35.41 
TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       48.36        17.16        19.20        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6433 
       64.73        17.06        17.75        57.07        33.11        13.32 
TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
       24.43        90.08        20.52         4.70        21.86        26.43 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 
      126.08        19.79        15.06         6.08        53.92        10.98 
TCGA-CV-6959 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7103 
        8.38        64.80       126.12        12.66         5.23        52.31 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 
       36.00        31.33        17.10        95.34        11.87        47.97 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7415 
       58.06        35.54        17.82       210.94        89.33        22.85 
TCGA-CV-7416 TCGA-CV-7422 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-7433 
       25.02        34.09        56.48       156.49         3.48        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 
        7.13       142.49        16.60         6.38        21.99        10.55 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
       27.22        13.25         2.53         5.03         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-7590 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       34.78        15.68        21.73        12.13        12.10        10.65 
TCGA-H7-7774 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7631 
        0.99         0.82         1.02         1.45        22.75         4.01 
TCGA-IQ-7632 
        3.72 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             0.07              0.82 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           135.29            210.94 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            11.90             17.06 
[1] "0.1 - 135.3 (11.9)" "0.8 - 210.9 (17.1)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     21   99
  3P LOSS WILD-TYPE   63  126
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  FEMALE              21                63
  MALE                99               126
D44V4, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  T1               7                18
  T2              25                52
  T3              28                35
  T4              39                62
D44V5, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  N0              40                62
  N1               7                25
  N2              40                58
  N3               4                 1
D44V6, multiclass
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  I                 7                11
  II               13                34
  III              16                26
  IV               62                92
D44V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     29   91
  3P LOSS WILD-TYPE   47  142
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO               29                47
  YES              91               142
D44V8, continuous
D44V9, continuous
D44V10, multiclass
                                             clus
vv                                            3P LOSS MUTATED 3P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              37                44
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   18                38
  CURRENT SMOKER                                           42                55
  LIFELONG NON-SMOKER                                      19                45
D44V11, continuous

Clustering(45) Variable = 3q loss mutation analysis
D45V1, survival
                   sevent
clus2                 0   1
  3Q LOSS MUTATED    11  10
  3Q LOSS WILD-TYPE 174 111
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               21               285 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               10               111 
$`3Q LOSS MUTATED`
TCGA-BA-5555 TCGA-BB-7862 TCGA-BB-7870 TCGA-CN-4725 TCGA-CN-4735 TCGA-CN-5365 
        6.12        17.59        37.87        10.19        12.13        11.54 
TCGA-CN-6995 TCGA-CN-6997 TCGA-CR-6493 TCGA-CR-7374 TCGA-CR-7380 TCGA-CR-7390 
        3.68         3.29         9.27         0.99        19.92        29.82 
TCGA-CR-7398 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5976 TCGA-CV-6441 
        5.13       108.33        47.28        17.95        48.59         5.88 
TCGA-CV-7252 TCGA-CV-7428 TCGA-HD-7753 
        4.96        54.90         0.16 

$`3Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        27.78        57.90         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
        4.37        18.31        10.19        13.87        23.61        20.98 
TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 
       14.04        14.33         6.31        13.55         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 
       10.68         5.46        11.28        12.59        17.16        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       16.21        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.18         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.75         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 
       13.25         4.21        14.96        26.76        33.07        16.70 
TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       22.78        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7365 
        7.66        12.46        11.51        15.75        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       29.23        31.96        34.06        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.02        12.89        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.54         7.10         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5436 TCGA-CV-5440 
       48.36       135.29        17.16       129.21        19.20        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       17.75        57.07        33.11         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       13.32        24.43        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       17.10        95.34        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        58.06        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 
       34.09       100.54        14.86        56.48       156.49         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        5.03         4.18        37.78        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       18.02        14.04        18.90        21.73        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 
       12.13        12.10        10.65         1.15         0.46         0.99 
TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 
        0.07         0.82         1.02         1.81         1.45        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             0.16              0.07 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
           108.33            210.94 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            11.54             14.33 
[1] "0.2 - 108.3 (11.5)" "0.1 - 210.9 (14.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      3   18
  3Q LOSS WILD-TYPE   81  207
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  FEMALE               3                81
  MALE                18               207
D45V4, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  T1               1                24
  T2               3                74
  T3               7                56
  T4               9                92
D45V5, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  N0               9                93
  N1               0                32
  N2              10                88
  N3               1                 4
D45V6, multiclass
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  I                 1                17
  II                2                45
  III               1                41
  IV               16               138
D45V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      6   15
  3Q LOSS WILD-TYPE   70  218
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO                6                70
  YES              15               218
D45V8, continuous
D45V9, continuous
D45V10, multiclass
                                             clus
vv                                            3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               6                75
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                54
  CURRENT SMOKER                                            9                88
  LIFELONG NON-SMOKER                                       2                62
D45V11, continuous

Clustering(46) Variable = 4p loss mutation analysis
D46V1, survival
                   sevent
clus2                 0   1
  4P LOSS MUTATED    42  34
  4P LOSS WILD-TYPE 143  87
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               76               230 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               34                87 
$`4P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5555 
       15.16        13.64        37.28         9.07         8.15         6.12 
TCGA-BA-5558 TCGA-BA-6871 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-7861 TCGA-BB-7871 
       53.75         2.07        95.05         9.04        10.19        14.04 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4730 TCGA-CN-4735 TCGA-CN-5360 
       13.55        10.19         4.67        11.28        12.13        28.47 
TCGA-CN-5364 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6021 
       16.21         9.01         6.81         7.50         4.70         9.07 
TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6997 TCGA-CQ-5323 TCGA-CQ-6220 TCGA-CQ-6225 
        2.73         3.68         3.29        48.16        32.35        13.25 
TCGA-CR-5248 TCGA-CR-6472 TCGA-CR-6487 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       54.64        34.52         7.66        35.84         3.42         3.06 
TCGA-CR-7374 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7398 TCGA-CR-7404 TCGA-CV-5434 
        0.99        27.02        29.82         5.13        48.36       108.33 
TCGA-CV-5435 TCGA-CV-5440 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       47.28        89.82         5.88        90.08         2.14         9.70 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6956 
       26.43        11.24        42.35        15.06        30.05         7.13 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7261 
        2.50         4.14       111.12         5.23        52.31        36.13 
TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7430 TCGA-CV-7435 TCGA-CV-7438 
        9.67        22.85        25.94        16.27       142.49         6.38 
TCGA-CX-7082 TCGA-CX-7219 TCGA-D6-6516 TCGA-DQ-5629 TCGA-DQ-7589 TCGA-F7-8298 
       10.39        27.22        10.68        16.96        18.90         0.46 
TCGA-HD-7753 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.16         1.02         1.81         1.45 

$`4P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 
        9.30         6.25        27.78        57.90         5.88         7.96 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       57.44         5.00         8.02        14.79        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7862 
        7.76         6.12         4.60         4.37        18.31        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7872 TCGA-CN-4722 
       13.87        23.61        20.98        37.87        14.33         6.31 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 
        6.38        10.68         5.46        12.59        17.16        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5365 
        9.17         9.50         5.69        12.39         8.28        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6013 
       11.84        11.57        12.49         8.52        13.58         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 
        6.61         5.23         1.48         4.41         3.19         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6996 
        6.18         7.36         1.38         5.82         3.91         3.75 
TCGA-CN-6998 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
        1.51        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       32.88        34.75        32.35         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5249 
       33.07        16.70        22.78        84.23        11.77        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 
       26.24        58.42        50.01        39.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7379 
       47.34        40.90        24.95        29.23        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 
       19.92        26.17        17.13        32.78        47.01        12.89 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
        5.92        35.41        29.92       135.29        17.16       129.21 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       19.20        17.95        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6936 
        7.07        43.23        40.96        13.32        24.43         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       20.52         4.70        21.86       126.08        19.79        12.03 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 
        6.08        53.92        65.82        10.98         8.38        28.31 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
       64.80       126.12        18.81        12.66         7.99         9.01 
TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
        1.84        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
        2.10        18.41        58.06        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
       89.33         0.46        25.02         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 
       14.86        56.48       156.49        54.90         3.48        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7086 
       19.73         7.13        16.60        21.99        10.55         7.76 
TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       13.25         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        4.18        37.78        34.78        15.68        18.02        14.04 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7754 TCGA-HL-7533 TCGA-IQ-7630 
        1.15         0.99         0.07         0.82        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             0.16              0.07 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           142.49            210.94 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           11.260            15.715 
[1] "0.2 - 142.5 (11.3)" "0.1 - 210.9 (15.7)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     16   60
  4P LOSS WILD-TYPE   68  165
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  FEMALE              16                68
  MALE                60               165
D46V4, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  T1               8                17
  T2              13                64
  T3              19                44
  T4              22                79
D46V5, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  N0              23                79
  N1               6                26
  N2              29                69
  N3               1                 4
D46V6, multiclass
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  I                 7                11
  II                6                41
  III               9                33
  IV               40               114
D46V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     18   58
  4P LOSS WILD-TYPE   58  175
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO               18                58
  YES              58               175
D46V8, continuous
D46V9, continuous
D46V10, multiclass
                                             clus
vv                                            4P LOSS MUTATED 4P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              23                58
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    5                51
  CURRENT SMOKER                                           34                63
  LIFELONG NON-SMOKER                                      12                52
D46V11, continuous

Clustering(47) Variable = 4q loss mutation analysis
D47V1, survival
                   sevent
clus2                 0   1
  4Q LOSS MUTATED    30  20
  4Q LOSS WILD-TYPE 155 101
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               50               256 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               20               101 
$`4Q LOSS MUTATED`
TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-5558 TCGA-BB-4227 TCGA-BB-7870 TCGA-BB-7871 
        9.07         6.12        53.75         4.37        37.87        14.04 
TCGA-CN-4725 TCGA-CN-4735 TCGA-CN-5360 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6021 
       10.19        12.13        28.47         6.81         4.70         9.07 
TCGA-CN-6997 TCGA-CQ-5323 TCGA-CQ-6220 TCGA-CQ-6225 TCGA-CR-5248 TCGA-CR-6472 
        3.29        48.16        32.35        13.25        54.64        34.52 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7374 TCGA-CR-7398 
       11.64         7.66         3.42         3.06         0.99         5.13 
TCGA-CR-7404 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-6003 
       48.36       108.33        47.28        17.95        89.82        40.96 
TCGA-CV-6441 TCGA-CV-6935 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6962 TCGA-CV-7091 
        5.88         9.70        65.82         7.13         4.14       111.12 
TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7261 TCGA-CV-7413 TCGA-CV-7418 
        5.23        52.31        12.89        36.13         9.67        25.94 
TCGA-CV-7430 TCGA-CV-7435 TCGA-CV-7438 TCGA-CX-7086 TCGA-CX-7219 TCGA-DQ-5629 
       16.27       142.49         6.38         7.76        27.22        16.96 
TCGA-DQ-7589 TCGA-DQ-7592 
       18.90         9.83 

$`4Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 
       27.78        57.90         5.88         7.96        57.44         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        8.02        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 
        6.12        95.05         9.04         4.60        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7872 TCGA-CN-4722 
       17.59        13.87        23.61        20.98        14.33         6.31 
TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       13.55         4.67         6.38        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       12.59        17.16        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       12.39         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6013 
       12.49         8.52        13.58         9.01         7.50         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 
        6.61         5.23         1.48         4.41         3.19         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.18         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.68         3.75         1.51        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 
        4.21        28.60        32.88        34.75        32.35         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 
       14.96        26.76        33.07        16.70        22.78        84.23 
TCGA-CR-5247 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       11.77        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
       11.34        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7372 TCGA-CR-7373 
       39.12        47.34        40.90        35.84        24.95        29.23 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 
       29.85        29.52        30.54         7.10         5.92        35.41 
TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5436 TCGA-CV-5441 
       29.92       135.29        17.16       129.21        19.20        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 
       57.07        48.59        33.11         7.07        43.23        13.32 
TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       24.43        90.08         2.14         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 
       42.35        15.06        30.05         6.08        53.92        10.98 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 
        8.38        28.31         2.50        64.80       126.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7177 TCGA-CV-7178 
       12.66         7.99         9.01         1.84        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       31.33        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       11.87        47.97         2.10        18.41        58.06        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
       17.82       210.94        89.33         0.46        22.85        25.02 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 
       54.90         3.48        84.49        19.73         7.13        16.60 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       21.99        10.39        10.55        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        7.82         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7591 
       34.78        15.68        18.02        14.04        21.73        11.84 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 
       12.13        12.10        10.65         1.15         0.46         0.99 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
       22.75         5.26         4.01         3.72 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             0.99              0.07 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           142.49            210.94 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            13.07             14.56 
[1] "1.0 - 142.5 (13.1)" "0.1 - 210.9 (14.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D47V2, continuous
D47V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     13   37
  4Q LOSS WILD-TYPE   71  188
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  FEMALE              13                71
  MALE                37               188
D47V4, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  T1               4                21
  T2               7                70
  T3              13                50
  T4              15                86
D47V5, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  N0              13                89
  N1               4                28
  N2              18                80
  N3               0                 5
D47V6, multiclass
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  I                 4                14
  II                4                43
  III               7                35
  IV               24               130
D47V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     14   36
  4Q LOSS WILD-TYPE   62  197
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO               14                62
  YES              36               197
D47V8, continuous
D47V9, continuous
D47V10, multiclass
                                             clus
vv                                            4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              14                67
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    5                51
  CURRENT SMOKER                                           19                78
  LIFELONG NON-SMOKER                                      10                54
D47V11, continuous

Clustering(48) Variable = 5p loss mutation analysis
D48V1, survival
                   sevent
clus2                 0   1
  5P LOSS MUTATED     6   4
  5P LOSS WILD-TYPE 179 117
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               10               296 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                4               117 
$`5P LOSS MUTATED`
TCGA-BB-7871 TCGA-CR-7364 TCGA-CV-5432 TCGA-CV-6940 TCGA-CV-6951 TCGA-CV-6962 
       14.04        47.18       129.21        26.43        30.05         4.14 
TCGA-CV-7242 TCGA-CV-7414 TCGA-CV-7435 TCGA-CX-7086 
       36.00         0.46       142.49         7.76 

$`5P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        4.60         4.37        18.31        10.19        17.59        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 
       23.61        20.98        37.87        14.33         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        6.81         7.50         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 
       32.35        13.25         4.21        14.96        26.76        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       16.70        22.78        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
      135.29        17.16       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        13.32        24.43         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
       28.31         2.50        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
        4.73        47.47        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        58.06        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 
       16.27        84.49        19.73         7.13        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       21.99        10.39        10.55        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       37.78        34.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 
       10.65         1.15         0.46         0.99         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 
        0.82         1.02         1.81         1.45        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             0.46              0.07 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           142.49            210.94 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           28.240            13.955 
[1] "0.5 - 142.5 (28.2)" "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      4    6
  5P LOSS WILD-TYPE   80  219
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  FEMALE               4                80
  MALE                 6               219
D48V4, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  T1               0                25
  T2               2                75
  T3               4                59
  T4               4                97
D48V5, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  N0               3                99
  N1               2                30
  N2               4                94
  N3               0                 5
D48V6, multiclass
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  I                 0                18
  II                1                46
  III               4                38
  IV                5               149
D48V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      0   10
  5P LOSS WILD-TYPE   76  223
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO                0                76
  YES              10               223
D48V8, continuous
D48V9, continuous
D48V10, multiclass
                                             clus
vv                                            5P LOSS MUTATED 5P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3                78
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                54
  CURRENT SMOKER                                            5                92
  LIFELONG NON-SMOKER                                       0                64
D48V11, continuous

Clustering(49) Variable = 5q loss mutation analysis
D49V1, survival
                   sevent
clus2                 0   1
  5Q LOSS MUTATED    41  20
  5Q LOSS WILD-TYPE 144 101
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               61               245 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               20               101 
$`5Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-7269 TCGA-BB-4224 TCGA-BB-7870 
       15.16         9.07         6.12         7.76         9.04        37.87 
TCGA-BB-7871 TCGA-CN-4725 TCGA-CN-4727 TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-5360 
       14.04        10.19         6.38        12.59         7.89        28.47 
TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6024 TCGA-CN-6992 TCGA-CQ-5332 TCGA-CQ-7065 
        6.81         4.70         7.36         2.73        10.42        33.07 
TCGA-CR-5247 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 
       11.77         9.27        47.18        39.12        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7390 TCGA-CR-7398 TCGA-CR-7399 TCGA-CV-5432 
        3.42         3.06        29.82         5.13         5.92       129.21 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5973 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6940 
       89.82        87.55        57.07        40.96        90.08        26.43 
TCGA-CV-6951 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7095 
       30.05         8.38        28.31         4.14       111.12        18.81 
TCGA-CV-7103 TCGA-CV-7180 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7261 TCGA-CV-7407 
       52.31        10.75        36.00        31.33        36.13        35.54 
TCGA-CV-7414 TCGA-CV-7421 TCGA-CV-7424 TCGA-CV-7435 TCGA-CX-7082 TCGA-CX-7086 
        0.46         0.07        14.86       142.49        10.39         7.76 
TCGA-D6-6823 TCGA-DQ-5631 TCGA-DQ-7592 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
        7.82        18.02         9.83        12.10        10.65         1.15 
TCGA-HD-7753 
        0.16 

$`5Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        37.28         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
       57.90         5.88         7.96        53.75        57.44         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 
        8.02        14.79         2.07        12.99         3.72         6.12 
TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
       95.05         4.60         4.37        18.31        10.19        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 
       13.87        23.61        20.98        14.33         6.31        13.55 
TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4733 TCGA-CN-4735 
        4.67        10.68         5.46        11.28        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       12.99        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 
        9.17         9.50         5.69        12.39         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        9.01         7.50         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 
        4.41         3.19         9.07         6.61         6.18         1.38 
TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        5.82         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       29.46        33.80        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 
       26.76        16.70        22.78        84.23        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7367 
       11.64         7.66        12.46        11.51        15.75        47.34 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 
       35.41        29.92        48.36       135.29        17.16       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       47.28        19.20        17.95        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       17.06        13.35        17.75        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 
       43.23        13.32        24.43         5.88         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 
        5.46        20.52         4.70        21.86        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6953 
       19.79        12.03        42.35        15.06         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 
       65.82        10.98         7.13         2.50        64.80       126.12 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7104 
       12.66         7.99         9.01         5.23         1.84        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       21.76        71.21       114.94        56.68         4.73        47.47 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 TCGA-CV-7410 
       47.97         2.10        18.41        58.06        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 
       89.33         9.67        22.85        25.02        25.94        34.09 
TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
      100.54        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       84.49        19.73         7.13        16.60         6.38        21.99 
TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 
       10.55        27.22        13.25        10.68         8.22         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        5.00         5.03         4.18        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 
       15.68        14.04        18.90        21.73        11.84        12.13 
TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        0.46         0.99         0.07         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.45        22.75         5.26         4.01         3.72 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             0.07              0.07 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           142.49            210.94 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            12.10             14.79 
[1] "0.1 - 142.5 (12.1)" "0.1 - 210.9 (14.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     14   47
  5Q LOSS WILD-TYPE   70  178
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  FEMALE              14                70
  MALE                47               178
D49V4, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  T1               2                23
  T2              17                60
  T3              16                47
  T4              19                82
D49V5, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  N0              20                82
  N1               9                23
  N2              21                77
  N3               0                 5
D49V6, multiclass
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  I                 2                16
  II                8                39
  III              13                29
  IV               31               123
D49V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     14   47
  5Q LOSS WILD-TYPE   62  186
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO               14                62
  YES              47               186
D49V8, continuous
D49V9, continuous
D49V10, multiclass
                                             clus
vv                                            5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              17                64
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    6                50
  CURRENT SMOKER                                           27                70
  LIFELONG NON-SMOKER                                       9                55
D49V11, continuous

Clustering(50) Variable = 6p loss mutation analysis
D50V1, survival
                   sevent
clus2                 0   1
  6P LOSS MUTATED    11   8
  6P LOSS WILD-TYPE 174 113
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               19               287 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                8               113 
$`6P LOSS MUTATED`
TCGA-BA-5152 TCGA-BB-4225 TCGA-BB-7862 TCGA-CN-4735 TCGA-CN-6010 TCGA-CN-6988 
       27.78         4.60        17.59        12.13         6.81         1.38 
TCGA-CN-6994 TCGA-CN-6997 TCGA-CQ-5332 TCGA-CR-7371 TCGA-CR-7399 TCGA-CV-5434 
        3.91         3.29        10.42         3.06         5.92       108.33 
TCGA-CV-5436 TCGA-CV-6441 TCGA-CV-6960 TCGA-CV-7418 TCGA-DQ-5624 TCGA-DQ-7588 
       19.20         5.88        28.31        25.94        37.78        14.04 
TCGA-DQ-7591 
       11.84 

$`6P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 
        3.72         7.76         6.12        95.05         9.04         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       18.31        10.19        13.87        23.61        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       14.04        14.33         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
        8.52        13.58         9.01         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 
        6.61         6.18         7.36         5.82         2.73         3.68 
TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.75         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 
       38.89        27.65        29.46        33.80        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
        4.21        14.96        26.76        33.07        16.70        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7373 
       47.34        40.90        35.84         3.42        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       47.28        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
       10.98         7.13         8.38         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       31.33        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       11.87        47.97         2.10        36.13        18.41        58.06 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       22.85        25.02         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 
       34.78        16.96        15.68        18.02        18.90        21.73 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        0.99         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.45        22.75         5.26         4.01         3.72 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             1.38              0.07 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
           108.33            210.94 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            11.84             14.79 
[1] "1.4 - 108.3 (11.8)" "0.1 - 210.9 (14.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
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"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
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  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      3   16
  6P LOSS WILD-TYPE   81  209
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  FEMALE               3                81
  MALE                16               209
D50V4, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  T1               0                25
  T2               0                77
  T3               9                54
  T4               6                95
D50V5, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  N0               5                97
  N1               1                31
  N2               9                89
  N3               0                 5
D50V6, multiclass
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  I                 0                18
  II                0                47
  III               4                38
  IV               11               143
D50V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      6   13
  6P LOSS WILD-TYPE   70  220
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO                6                70
  YES              13               220
D50V8, continuous
D50V9, continuous
D50V10, multiclass
                                             clus
vv                                            6P LOSS MUTATED 6P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               9                72
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                53
  CURRENT SMOKER                                            5                92
  LIFELONG NON-SMOKER                                       1                63
D50V11, continuous

Clustering(51) Variable = 6q loss mutation analysis
D51V1, survival
                   sevent
clus2                 0   1
  6Q LOSS MUTATED    13   8
  6Q LOSS WILD-TYPE 172 113
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               21               285 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
                8               113 
$`6Q LOSS MUTATED`
TCGA-BA-5152 TCGA-BA-5555 TCGA-BB-4225 TCGA-CN-6010 TCGA-CN-6988 TCGA-CN-6994 
       27.78         6.12         4.60         6.81         1.38         3.91 
TCGA-CR-5248 TCGA-CR-6473 TCGA-CR-6491 TCGA-CR-7399 TCGA-CR-7404 TCGA-CV-5434 
       54.64        36.99        11.51         5.92        48.36       108.33 
TCGA-CV-6441 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-7253 TCGA-CV-7416 TCGA-DQ-5624 
        5.88        53.92        65.82        11.87        25.02        37.78 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 
       18.02        14.04        11.84 

$`6Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
        6.25        57.90         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        5.00         8.02        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 
        7.76         6.12        95.05         9.04         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        23.61        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       14.04        14.33         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 
       12.49         8.52        13.58         9.01         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 
        9.07         6.61         6.18         7.36         5.82         2.73 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5249 
       33.07        16.70        22.78        84.23        11.77        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 
       26.24        58.42        50.01        39.52        34.52        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
        7.66        12.46        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
        5.13        35.41        29.92       135.29        17.16       129.21 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       47.28        19.20        17.95        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6955 
       12.03        42.35        15.06        30.05         6.08        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       31.33        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       47.97         2.10        36.13        18.41        58.06        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5625 
        7.82         2.53         5.00         5.03         4.18        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7592 TCGA-DQ-7593 
       16.96        15.68        18.90        21.73         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 
       12.10        10.65         1.15         0.46         0.99         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 
        0.16         0.82         1.02         1.81         1.45        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             1.38              0.07 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           108.33            210.94 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            14.04             14.33 
[1] "1.4 - 108.3 (14.0)" "0.1 - 210.9 (14.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      4   17
  6Q LOSS WILD-TYPE   80  208
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  FEMALE               4                80
  MALE                17               208
D51V4, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  T1               0                25
  T2               0                77
  T3               4                59
  T4               9                92
D51V5, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  N0               5                97
  N1               0                32
  N2               6                92
  N3               0                 5
D51V6, multiclass
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  I                 0                18
  II                0                47
  III               2                40
  IV               11               143
D51V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      5   16
  6Q LOSS WILD-TYPE   71  217
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO                5                71
  YES              16               217
D51V8, continuous
D51V9, continuous
D51V10, multiclass
                                             clus
vv                                            6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                74
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    4                52
  CURRENT SMOKER                                            4                93
  LIFELONG NON-SMOKER                                       4                60
D51V11, continuous

Clustering(52) Variable = 7p loss mutation analysis
D52V1, survival
                   sevent
clus2                 0   1
  7P LOSS MUTATED     3   2
  7P LOSS WILD-TYPE 182 119
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                5               301 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                2               119 
$`7P LOSS MUTATED`
TCGA-CR-6473 TCGA-CV-5435 TCGA-CV-7242 TCGA-CV-7430 TCGA-CX-7082 
       36.99        47.28        36.00        16.27        10.39 

$`7P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        4.60         4.37        18.31        10.19        17.59        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 
       23.61        20.98        37.87        14.04        14.33         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       13.55        10.19         4.67         6.38        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.18         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       33.07        16.70        22.78        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 
       48.36       135.29        17.16       129.21       108.33        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        40.96        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       31.33        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       11.87        47.97         2.10        36.13        18.41        58.06 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
       22.85        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 
       14.86        56.48       156.49        54.90         3.48        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        7.82         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       34.78        16.96        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        1.15         0.46         0.99         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.02         1.81         1.45        22.75         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            10.39              0.07 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            47.28            210.94 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            36.00             14.04 
[1] "10.4 - 47.3 (36.0)" "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      1    4
  7P LOSS WILD-TYPE   83  221
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  FEMALE               1                83
  MALE                 4               221
D52V4, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  T1               0                25
  T2               2                75
  T3               0                63
  T4               2                99
D52V5, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  N0               2               100
  N1               0                32
  N2               2                96
  N3               0                 5
D52V6, multiclass
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  I                 0                18
  II                1                46
  III               0                42
  IV                3               151
D52V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      1    4
  7P LOSS WILD-TYPE   75  229
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO                1                75
  YES               4               229
D52V8, continuous
D52V9, continuous
D52V10, multiclass
                                             clus
vv                                            7P LOSS MUTATED 7P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                77
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                55
  CURRENT SMOKER                                            0                97
  LIFELONG NON-SMOKER                                       0                64
D52V11, continuous

Clustering(53) Variable = 7q loss mutation analysis
D53V1, survival
                   sevent
clus2                 0   1
  7Q LOSS MUTATED     6   3
  7Q LOSS WILD-TYPE 179 118
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                9               297 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                3               118 
$`7Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-5152 TCGA-BB-4224 TCGA-CN-4731 TCGA-CR-7374 
       15.16        13.64        27.78         9.04        12.59         0.99 
TCGA-CR-7398 TCGA-CV-6954 TCGA-CX-7082 
        5.13        65.82        10.39 

$`7Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5153 
        9.30        37.28         9.07         8.15         6.25        57.90 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
        6.12         5.88         7.96        53.75        57.44         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        8.02        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        6.12        95.05         4.60         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.59        13.87        23.61        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       14.33         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
       10.68         5.46        11.28        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       13.58         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61         6.18         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       33.80        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 
       26.76        33.07        16.70        22.78        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 
       35.84         3.42         3.06        24.95        29.23        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.54         7.10         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       36.00        31.33        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       58.06        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
        6.38        21.99        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        4.18        37.78        34.78        16.96        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       14.04        18.90        21.73        11.84         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 
       12.10        10.65         1.15         0.46         0.99         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 
        0.16         0.82         1.02         1.81         1.45        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             0.99              0.07 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            65.82            210.94 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            12.59             14.33 
[1] "1.0 - 65.8 (12.6)"  "0.1 - 210.9 (14.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      3    6
  7Q LOSS WILD-TYPE   81  219
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  FEMALE               3                81
  MALE                 6               219
D53V4, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  T1               0                25
  T2               4                73
  T3               0                63
  T4               3                98
D53V5, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  N0               2               100
  N1               0                32
  N2               4                94
  N3               0                 5
D53V6, multiclass
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  I                 0                18
  II                1                46
  III               0                42
  IV                6               148
D53V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      1    8
  7Q LOSS WILD-TYPE   75  225
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO                1                75
  YES               8               225
D53V8, continuous
D53V9, continuous
D53V10, multiclass
                                             clus
vv                                            7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               2                79
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                55
  CURRENT SMOKER                                            4                93
  LIFELONG NON-SMOKER                                       1                63
D53V11, continuous

Clustering(54) Variable = 8p loss mutation analysis
D54V1, survival
                   sevent
clus2                 0   1
  8P LOSS MUTATED    33  32
  8P LOSS WILD-TYPE 152  89
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               65               241 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               32                89 
$`8P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4228 
       15.16        13.64         8.15         3.72         7.76        18.31 
TCGA-BB-7862 TCGA-BB-7871 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-5360 TCGA-CN-5363 
       17.59        14.04        10.19         4.67        28.47         8.28 
TCGA-CN-5367 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6992 
       11.57         8.52        13.58         7.50         5.06         2.73 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6225 
        3.75         3.29         2.93        10.42         4.21        13.25 
TCGA-CQ-6228 TCGA-CR-6471 TCGA-CR-7364 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       14.96        39.52        47.18        24.95        29.23         0.99 
TCGA-CR-7380 TCGA-CR-7388 TCGA-CR-7399 TCGA-CV-5434 TCGA-CV-5973 TCGA-CV-6935 
       19.92        27.02         5.92       108.33        57.07         9.70 
TCGA-CV-6942 TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-7090 
      126.08         6.08        65.82         7.13        28.31       126.12 
TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7247 TCGA-CV-7255 TCGA-CV-7261 
        9.01         1.84        12.89        18.97         2.10        36.13 
TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7427 TCGA-CV-7434 TCGA-CV-7438 
       22.85         0.07       100.54       156.49         7.13         6.38 
TCGA-D6-6517 TCGA-D6-6825 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5631 TCGA-DQ-7589 
        8.22         5.00        37.78        34.78        18.02        18.90 
TCGA-DQ-7592 TCGA-F7-8298 TCGA-HD-7753 TCGA-HD-8224 TCGA-IQ-7630 
        9.83         0.46         0.16         1.81         5.26 

$`8P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
        9.30        37.28         9.07         6.25        27.78        57.90 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
        6.12         5.88         7.96        53.75        57.44         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BB-4217 TCGA-BB-4223 
        8.02        14.79         2.07        12.99         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 
        9.04         4.60         4.37        10.19        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4727 
       20.98        37.87        14.33         6.31        13.55         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5364 
       13.05         9.17         9.50         5.69        12.39        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 
       11.54        11.84        12.49         9.01         6.81         4.70 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 
        6.61         6.18         7.36         1.38         5.82         3.91 
TCGA-CN-6995 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 
        3.68         1.51        48.16        39.68        21.50        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-6218 TCGA-CQ-6220 
       27.65        29.46        33.80        11.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7065 
       32.88        34.75        32.35         4.21        26.76        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       16.70        22.78        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       26.24        58.42        50.01        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 
        7.66        12.46        11.51        15.75         9.27        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7376 
       47.34        40.90        35.84         3.42         3.06        31.96 
TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 
       34.06        26.17        17.13        32.78        47.01        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        7.10         5.13        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
       17.16       129.21        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       17.75        48.59        33.11         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6936 
       13.32        24.43         5.88        90.08         2.14         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6943 
       20.52         4.70        21.86        26.43        11.24        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6955 
       12.03        42.35        15.06        30.05        53.92        10.98 
TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 
        8.38         2.50         4.14        64.80       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7178 
       12.66         7.99         5.23        52.31        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       31.33        26.20        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       47.97        18.41        58.06        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 
       89.33         9.67         0.46        25.02        25.94        34.09 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       14.86        56.48        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
       19.73       142.49        16.60        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6824 
        7.76        27.22        13.25        10.68         7.82         2.53 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7590 
        5.03         4.18        16.96        15.68        14.04        21.73 
TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-H7-7774 
       11.84        12.13        12.10        10.65         1.15         0.99 
TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7631 
        0.07         0.82         1.02         1.45        22.75         4.01 
TCGA-IQ-7632 
        3.72 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             0.07              0.07 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           156.49            210.94 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            10.42             15.75 
[1] "0.1 - 156.5 (10.4)" "0.1 - 210.9 (15.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     18   47
  8P LOSS WILD-TYPE   66  178
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  FEMALE              18                66
  MALE                47               178
D54V4, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  T1               7                18
  T2              10                67
  T3              22                41
  T4              18                83
D54V5, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  N0              20                82
  N1               7                25
  N2              22                76
  N3               1                 4
D54V6, multiclass
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  I                 6                12
  II                6                41
  III              12                30
  IV               33               121
D54V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     17   48
  8P LOSS WILD-TYPE   59  185
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO               17                59
  YES              48               185
D54V8, continuous
D54V9, continuous
D54V10, multiclass
                                             clus
vv                                            8P LOSS MUTATED 8P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              14                67
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   12                44
  CURRENT SMOKER                                           22                75
  LIFELONG NON-SMOKER                                      15                49
D54V11, continuous

Clustering(55) Variable = 8q loss mutation analysis
D55V1, survival
                   sevent
clus2                 0   1
  8Q LOSS MUTATED     2   4
  8Q LOSS WILD-TYPE 183 117
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                6               300 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                4               117 
$`8Q LOSS MUTATED`
TCGA-BA-4076 TCGA-CN-5360 TCGA-CN-6011 TCGA-CV-6956 TCGA-CV-7100 TCGA-CV-7415 
       13.64        28.47         7.50         7.13         9.01        22.85 

$`8Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 
       20.98        37.87        14.04        14.33         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        5.69        12.39         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
        4.21        14.96        26.76        33.07        16.70        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        13.32        24.43         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7101 TCGA-CV-7102 
      111.12        18.81        12.66         7.99         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
        2.10        36.13        18.41        58.06        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 
      210.94        89.33         9.67         0.46        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 
        2.53         5.00         5.03         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       11.84         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        0.46         0.99         0.07         0.16         0.82         1.02 
TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.81         1.45        22.75         5.26         4.01         3.72 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             7.13              0.07 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            28.47            210.94 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
           11.325            14.330 
[1] "7.1 - 28.5 (11.3)"  "0.1 - 210.9 (14.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
[1] "hr=" "2.5"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      0    6
  8Q LOSS WILD-TYPE   84  219
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  FEMALE               0                84
  MALE                 6               219
D55V4, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  T1               0                25
  T2               1                76
  T3               1                62
  T4               3                98
D55V5, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  N0               2               100
  N1               2                30
  N2               1                97
  N3               0                 5
D55V6, multiclass
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  I                 0                18
  II                0                47
  III               2                40
  IV                3               151
D55V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      2    4
  8Q LOSS WILD-TYPE   74  229
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO                2                74
  YES               4               229
D55V8, continuous
D55V9, continuous
[1] "Remove cluster labels:" "8Q LOSS MUTATED"       
clus
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                2               118 
       TCGA-BA-4077        TCGA-BA-4078        TCGA-BA-5151        TCGA-BA-5152 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-6868        TCGA-BA-6871 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-7862        TCGA-BB-7864 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4729        TCGA-CN-4731        TCGA-CN-4736 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741        TCGA-CN-5358 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5367        TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-6017 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6019        TCGA-CN-6021        TCGA-CN-6023        TCGA-CN-6988 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6994        TCGA-CN-6997        TCGA-CQ-5323        TCGA-CQ-5324 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5325        TCGA-CQ-5326        TCGA-CQ-5330        TCGA-CQ-5331 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-6218        TCGA-CQ-6221 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225        TCGA-CQ-6227 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6473        TCGA-CR-6477        TCGA-CR-6478 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6487        TCGA-CR-6493        TCGA-CR-7368 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7373        TCGA-CR-7376        TCGA-CR-7385 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7395 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7397        TCGA-CR-7401        TCGA-CV-5430        TCGA-CV-5431 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5432        TCGA-CV-5435        TCGA-CV-5441        TCGA-CV-5442 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5444        TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5977 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933        TCGA-CV-6937 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6943        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6960 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6961        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7102        TCGA-CV-7235        TCGA-CV-7245 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7406        TCGA-CV-7410        TCGA-CV-7414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7424        TCGA-CV-7427        TCGA-CV-7430        TCGA-CV-7432 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CX-7082        TCGA-CX-7085        TCGA-D6-6516 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6517        TCGA-D6-6825        TCGA-DQ-5629        TCGA-DQ-5630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-H7-7774        TCGA-HD-7754        TCGA-HL-7533 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
D55V10, multiclass
                                             clus
vv                                            8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               1                80
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                55
  CURRENT SMOKER                                            3                94
  LIFELONG NON-SMOKER                                       0                64
D55V11, continuous

Clustering(56) Variable = 9p loss mutation analysis
D56V1, survival
                   sevent
clus2                 0   1
  9P LOSS MUTATED    49  35
  9P LOSS WILD-TYPE 136  86
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               84               222 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               35                86 
$`9P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 
       15.16        13.64         9.07         5.00         8.02        14.79 
TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4224 TCGA-BB-7862 TCGA-BB-7872 
        2.07        12.99         7.76         9.04        17.59        14.33 
TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
       13.55         4.67         6.38         5.46        11.28        12.59 
TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-5360 TCGA-CN-5373 TCGA-CN-6024 TCGA-CN-6988 
       12.13         7.89        28.47        13.58         7.36         1.38 
TCGA-CN-6992 TCGA-CN-6997 TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-6221 TCGA-CQ-6225 
        2.73         3.29         2.93        10.42        32.88        13.25 
TCGA-CQ-6228 TCGA-CQ-7065 TCGA-CR-5247 TCGA-CR-6472 TCGA-CR-6491 TCGA-CR-7364 
       14.96        33.07        11.77        34.52        11.51        47.18 
TCGA-CR-7368 TCGA-CR-7374 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7398 TCGA-CV-5430 
       40.90         0.99        27.02        29.82         5.13       135.29 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5973 TCGA-CV-5976 
      129.21       108.33        47.28        19.20        57.07        48.59 
TCGA-CV-5979 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6940 TCGA-CV-6945 
       43.23         5.88        90.08         2.14        26.43        12.03 
TCGA-CV-6948 TCGA-CV-6960 TCGA-CV-7091 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
       42.35        28.31       111.12        52.31        12.89        21.76 
TCGA-CV-7180 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7252 TCGA-CV-7255 
       10.75        36.00        31.33        26.20         4.96         2.10 
TCGA-CV-7263 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7430 TCGA-CV-7434 
       18.41         9.67        22.85         0.07        16.27         7.13 
TCGA-CV-7435 TCGA-CX-7082 TCGA-CX-7086 TCGA-D6-6823 TCGA-DQ-5629 TCGA-DQ-5631 
      142.49        10.39         7.76         7.82        16.96        18.02 
TCGA-DQ-7588 TCGA-DQ-7595 TCGA-F7-7848 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 
       14.04        10.65         1.15         0.16         0.82         5.26 

$`9P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
        9.30        37.28         8.15         6.25        27.78        57.90 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6873 
        6.12         5.88         7.96        53.75        57.44         3.72 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
        6.12        95.05         4.60         4.37        18.31        10.19 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-CN-4722 
       13.87        23.61        20.98        37.87        14.04         6.31 
TCGA-CN-4725 TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 
       10.19        10.68        17.16        12.99        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       12.39         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
       12.49         8.52         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 
        9.07         6.61         6.18         5.82         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 
        3.75         1.51        48.16        39.68        21.50        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       27.65        29.46        33.80        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7067 
       32.35        34.75        32.35         4.21        26.76        16.70 
TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       22.78        84.23        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       50.01        39.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 
       15.75         9.27        39.12        47.34        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
        3.06        24.95        29.23        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7391 
       26.17        17.13        32.78        47.01        12.89        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 
       31.10        29.85        29.52        30.54         7.10         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5439 TCGA-CV-5440 
       35.41        29.92        48.36        17.16        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       17.75        33.11         7.07        40.96        13.32        24.43 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 
        9.70         5.46        20.52         4.70        21.86        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
      126.08        19.79        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 
       65.82        10.98         7.13         8.38         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
       64.80       126.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
        5.23         1.84        71.21       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 
       47.47        18.97        17.10        95.34        11.87        47.97 
TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       36.13        58.06        35.54        17.82       210.94        89.33 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
        0.46        25.02        25.94        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 
       56.48       156.49        54.90         3.48        84.49        19.73 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 
       16.60         6.38        21.99        10.55        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
       10.68         8.22         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       37.78        34.78        15.68        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 
        9.83        12.13        12.10         0.46         0.99         0.07 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 
        1.02         1.81         1.45        22.75         4.01         3.72 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.07              0.07 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           142.49            210.94 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            13.12             15.98 
[1] "0.1 - 142.5 (13.1)" "0.1 - 210.9 (16.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     19   65
  9P LOSS WILD-TYPE   65  160
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  FEMALE              19                65
  MALE                65               160
D56V4, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  T1               5                20
  T2              22                55
  T3              18                45
  T4              25                76
D56V5, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  N0              27                75
  N1              10                22
  N2              28                70
  N3               1                 4
D56V6, multiclass
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  I                 4                14
  II                9                38
  III              14                28
  IV               42               112
D56V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     21   63
  9P LOSS WILD-TYPE   55  170
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO               21                55
  YES              63               170
D56V8, continuous
D56V9, continuous
D56V10, multiclass
                                             clus
vv                                            9P LOSS MUTATED 9P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              29                52
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    8                48
  CURRENT SMOKER                                           31                66
  LIFELONG NON-SMOKER                                      12                52
D56V11, continuous

Clustering(57) Variable = 9q loss mutation analysis
D57V1, survival
                   sevent
clus2                 0   1
  9Q LOSS MUTATED    18  11
  9Q LOSS WILD-TYPE 167 110
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               29               277 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               11               110 
$`9Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-7269 TCGA-CN-6024 TCGA-CQ-6221 
       15.16        14.79         2.07         7.76         7.36        32.88 
TCGA-CR-5247 TCGA-CR-6472 TCGA-CR-7364 TCGA-CR-7374 TCGA-CR-7390 TCGA-CV-5430 
       11.77        34.52        47.18         0.99        29.82       135.29 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5973 TCGA-CV-5979 TCGA-CV-6441 TCGA-CV-6940 
      108.33        47.28        57.07        43.23         5.88        26.43 
TCGA-CV-6945 TCGA-CV-7091 TCGA-CV-7243 TCGA-CV-7252 TCGA-CV-7255 TCGA-CV-7413 
       12.03       111.12        31.33         4.96         2.10         9.67 
TCGA-CV-7435 TCGA-D6-6823 TCGA-DQ-5631 TCGA-F7-7848 TCGA-HD-7753 
      142.49         7.82        18.02         1.15         0.16 

$`9Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
        9.30        13.64        37.28         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 
       57.44         5.00         8.02        12.99         3.72         6.12 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 
       95.05         9.04         4.60         4.37        18.31        10.19 
TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       17.59        13.87        23.61        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       14.33         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        9.07         6.61         6.18         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       33.80        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 
       33.07        16.70        22.78        84.23        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 
       26.24        58.42        50.01        39.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 
        7.66        12.46        11.51        15.75         9.27        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       29.23        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 
       32.78        47.01        27.02        12.89        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5436 
       35.41        29.92        48.36        17.16       129.21        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       17.06        13.35        17.75        48.59        33.11         7.07 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       40.96        13.32        24.43        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 
        5.46        20.52         4.70        21.86        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       19.79        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
        4.14        64.80       126.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 
       36.00        26.20        18.97        17.10        95.34        11.87 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
       47.97        36.13        18.41        58.06        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
      210.94        89.33         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 
       27.22        13.25        10.68         8.22         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        5.03         4.18        37.78        34.78        16.96        15.68 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       14.04        18.90        21.73        11.84         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7754 
       12.10        10.65         0.46         0.99         0.07         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.02         1.81         1.45        22.75         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.16              0.07 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           142.49            210.94 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            15.16             14.04 
[1] "0.2 - 142.5 (15.2)" "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      8   21
  9Q LOSS WILD-TYPE   76  204
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  FEMALE               8                76
  MALE                21               204
D57V4, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  T1               2                23
  T2               8                69
  T3               4                59
  T4               9                92
D57V5, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  N0              10                92
  N1               4                28
  N2               8                90
  N3               0                 5
D57V6, multiclass
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  I                 2                16
  II                2                45
  III               6                36
  IV               12               142
D57V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      8   21
  9Q LOSS WILD-TYPE   68  212
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO                8                68
  YES              21               212
D57V8, continuous
D57V9, continuous
D57V10, multiclass
                                             clus
vv                                            9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                76
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                53
  CURRENT SMOKER                                           14                83
  LIFELONG NON-SMOKER                                       5                59
D57V11, continuous

Clustering(58) Variable = 10p loss mutation analysis
D58V1, survival
                    sevent
clus2                  0   1
  10P LOSS MUTATED    24  21
  10P LOSS WILD-TYPE 161 100
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                45                261 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                21                100 
$`10P LOSS MUTATED`
TCGA-BA-4078 TCGA-BA-6868 TCGA-BA-6873 TCGA-BB-7870 TCGA-CN-4723 TCGA-CN-4737 
        9.07         5.00         3.72        37.87        13.55         7.89 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-6011 TCGA-CN-6018 TCGA-CN-6988 TCGA-CN-6996 
       28.47         8.28         7.50         1.48         1.38         3.75 
TCGA-CQ-5323 TCGA-CQ-5326 TCGA-CQ-6225 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7380 
       48.16         2.93        13.25        35.84         3.42        19.92 
TCGA-CR-7389 TCGA-CR-7398 TCGA-CV-5435 TCGA-CV-5444 TCGA-CV-6936 TCGA-CV-6942 
       12.89         5.13        47.28        64.73         5.46       126.08 
TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7100 
        6.08        65.82         2.50         4.14       126.12         9.01 
TCGA-CV-7102 TCGA-CV-7178 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7418 
        1.84        71.21        31.33        26.20        18.97        25.94 
TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7434 TCGA-CX-7219 TCGA-D6-6517 TCGA-D6-6823 
       14.86        54.90         7.13        27.22         8.22         7.82 
TCGA-D6-6826 TCGA-DQ-5631 TCGA-DQ-7590 
        5.03        18.02        21.73 

$`10P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 
       57.44         8.02        14.79         2.07        12.99         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 
       10.19        17.59        13.87        23.61        20.98        14.04 
TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
       14.33         6.31        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        9.50         5.69        12.39        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6020 
        4.70         5.06         6.61         5.23         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 
        9.07         6.61         6.18         7.36         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5324 TCGA-CQ-5325 
        3.91         3.68         3.29         1.51        39.68        21.50 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
        4.21        14.96        26.76        33.07        16.70        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       47.34        40.90         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       31.96        34.06        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
       30.54         7.10         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5439 
      135.29        17.16       129.21       108.33        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 
       89.82        87.55        76.47        84.39        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        9.70        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 
       19.79        12.03        42.35        15.06        30.05        53.92 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-7089 TCGA-CV-7091 
       10.98         7.13         8.38        28.31        64.80       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 
       18.81        12.66         7.99         5.23        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       21.76        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       36.00        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
        2.10        36.13        18.41        58.06        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 
        0.07        34.09       100.54        56.48       156.49         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       16.27        84.49        19.73       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 
       21.99        10.39        10.55         7.76        13.25        10.68 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        2.53         5.00         4.18        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       15.68        14.04        18.90        11.84         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 
       12.10        10.65         1.15         0.46         0.99         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 
        0.16         0.82         1.02         1.81         1.45        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              1.38               0.07 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            126.12             210.94 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             12.89              14.79 
[1] "1.4 - 126.1 (12.9)" "0.1 - 210.9 (14.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
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        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
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        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
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        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
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        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
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        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
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        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
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        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
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        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
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        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
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  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      9   36
  10P LOSS WILD-TYPE   75  189
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  FEMALE                9                 75
  MALE                 36                189
D58V4, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  T1                1                 24
  T2                8                 69
  T3                7                 56
  T4               23                 78
D58V5, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  N0               13                 89
  N1                4                 28
  N2               17                 81
  N3                1                  4
D58V6, multiclass
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  I                  1                 17
  II                 5                 42
  III                5                 37
  IV                28                126
D58V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     12   33
  10P LOSS WILD-TYPE   64  200
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                12                 64
  YES               33                200
D58V8, continuous
D58V9, continuous
D58V10, multiclass
                                             clus
vv                                            10P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               16
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     9
  CURRENT SMOKER                                            11
  LIFELONG NON-SMOKER                                        8
                                             clus
vv                                            10P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 65
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      47
  CURRENT SMOKER                                              86
  LIFELONG NON-SMOKER                                         56
D58V11, continuous

Clustering(59) Variable = 10q loss mutation analysis
D59V1, survival
                    sevent
clus2                  0   1
  10Q LOSS MUTATED    11  14
  10Q LOSS WILD-TYPE 174 107
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                25                281 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                14                107 
$`10Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-5555 TCGA-BB-7870 TCGA-CN-5360 TCGA-CQ-6225 
       15.16         9.07         6.12        37.87        28.47        13.25 
TCGA-CR-6470 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7389 TCGA-CR-7398 TCGA-CV-5434 
       50.01        35.84         3.42        12.89         5.13       108.33 
TCGA-CV-5435 TCGA-CV-6936 TCGA-CV-6940 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7090 
       47.28         5.46        26.43         2.50         4.14       126.12 
TCGA-CV-7245 TCGA-CV-7406 TCGA-CV-7418 TCGA-CV-7424 TCGA-D6-6823 TCGA-DQ-5631 
       26.20        58.06        25.94        14.86         7.82        18.02 
TCGA-DQ-7590 
       21.73 

$`10Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        37.28         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
       57.90         5.88         7.96        53.75        57.44         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        8.02        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 
       10.19        17.59        13.87        23.61        20.98        14.04 
TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       14.33         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 
       13.05         9.17         9.50         5.69        12.39         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       13.58         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61         6.18         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       33.80        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       32.88        34.75        32.35         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       33.07        16.70        22.78        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       37.87        26.24        58.42        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7371 TCGA-CR-7372 
       47.18        39.12        47.34        40.90         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 
       17.13        32.78        47.01        27.02        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 
       31.10        29.85        29.52        30.54         7.10         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 
        5.88        90.08         2.14         9.70        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       21.86        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 
        7.13         8.38        28.31        64.80       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 
        4.73        47.47        36.00        31.33        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       18.41        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
        0.46        22.85        25.02         0.07        34.09       100.54 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        8.22         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 
       34.78        16.96        15.68        14.04        18.90        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        0.99         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.45        22.75         5.26         4.01         3.72 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              2.50               0.07 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            126.12             210.94 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             18.02              13.87 
[1] "2.5 - 126.1 (18.0)" "0.1 - 210.9 (13.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
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"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      3   22
  10Q LOSS WILD-TYPE   81  203
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  FEMALE                3                 81
  MALE                 22                203
D59V4, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  T1                0                 25
  T2                8                 69
  T3                3                 60
  T4                9                 92
D59V5, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  N0                9                 93
  N1                1                 31
  N2                8                 90
  N3                0                  5
D59V6, multiclass
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  I                  0                 18
  II                 6                 41
  III                2                 40
  IV                12                142
D59V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      7   18
  10Q LOSS WILD-TYPE   69  215
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO                 7                 69
  YES               18                215
D59V8, continuous
D59V9, continuous
D59V10, multiclass
                                             clus
vv                                            10Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               10
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             9
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            10Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 71
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      52
  CURRENT SMOKER                                              88
  LIFELONG NON-SMOKER                                         62
D59V11, continuous

Clustering(60) Variable = 11p loss mutation analysis
D60V1, survival
                    sevent
clus2                  0   1
  11P LOSS MUTATED    24  15
  11P LOSS WILD-TYPE 161 106
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                39                267 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                15                106 
$`11P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4227 
       15.16         9.07         2.07        12.99         7.76         4.37 
TCGA-CN-4735 TCGA-CN-4740 TCGA-CN-5356 TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-5374 
       12.13        26.63         9.50         8.28        11.54         9.01 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6988 TCGA-CN-6992 TCGA-CQ-5332 TCGA-CR-5247 
        7.50         4.70         1.38         2.73        10.42        11.77 
TCGA-CR-5248 TCGA-CR-7385 TCGA-CR-7399 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6936 
       54.64        32.78         5.92         5.88        90.08         5.46 
TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6948 TCGA-CV-7091 TCGA-CV-7102 TCGA-CV-7253 
       26.43       126.08        42.35       111.12         1.84        11.87 
TCGA-CV-7415 TCGA-CV-7430 TCGA-CX-7082 TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-7594 
       22.85        16.27        10.39        37.78        16.96        12.10 
TCGA-F7-7848 TCGA-F7-8298 TCGA-HD-7753 
        1.15         0.46         0.16 

$`11P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        37.28         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 
        5.00         8.02        14.79         3.72         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
        9.04         4.60        18.31        10.19        17.59        13.87 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 
       23.61        20.98        37.87        14.04        14.33         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       13.55        10.19         4.67         6.38        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       11.28        12.59        17.16        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 
       11.44        28.77        13.05         9.17         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       28.47        16.21        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       13.58         6.81         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        5.82         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       29.46        33.80        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5249 
       26.76        33.07        16.70        22.78        84.23        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 
        3.06        24.95        29.23         0.99        31.96        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       19.92        26.17        17.13        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        7.10         5.13        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6935 
       43.23        40.96        13.32        24.43         2.14         9.70 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6943 TCGA-CV-6945 
       20.52         4.70        21.86        11.24        19.79        12.03 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      126.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 
       18.97        17.10        95.34         4.96        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
       36.13        18.41        58.06        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
       89.33         9.67         0.46        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
        3.48        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
        6.38        21.99        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
        4.18        34.78        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7595 TCGA-H7-7774 
       21.73        11.84         9.83        12.13        10.65         0.99 
TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 
        0.07         0.82         1.02         1.81         1.45        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.16               0.07 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            126.08             210.94 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             10.42              15.68 
[1] "0.2 - 126.1 (10.4)" "0.1 - 210.9 (15.7)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      8   31
  11P LOSS WILD-TYPE   76  194
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  FEMALE                8                 76
  MALE                 31                194
D60V4, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  T1                4                 21
  T2                7                 70
  T3                9                 54
  T4               11                 90
D60V5, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  N0               10                 92
  N1                4                 28
  N2               12                 86
  N3                3                  2
D60V6, multiclass
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  I                  3                 15
  II                 1                 46
  III                6                 36
  IV                20                134
D60V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     11   28
  11P LOSS WILD-TYPE   65  205
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO                11                 65
  YES               28                205
D60V8, continuous
D60V9, continuous
D60V10, multiclass
                                             clus
vv                                            11P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               12
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                            17
  LIFELONG NON-SMOKER                                        4
                                             clus
vv                                            11P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 69
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      52
  CURRENT SMOKER                                              80
  LIFELONG NON-SMOKER                                         60
D60V11, continuous

Clustering(61) Variable = 11q loss mutation analysis
D61V1, survival
                    sevent
clus2                  0   1
  11Q LOSS MUTATED    37  23
  11Q LOSS WILD-TYPE 148  98
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                60                246 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                23                 98 
$`11Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-6868 
       15.16        13.64        37.28         9.07         8.15         5.00 
TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-7866 TCGA-CN-4727 TCGA-CN-4735 TCGA-CN-4741 
       12.99         7.76        20.98         6.38        12.13        28.77 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 
       28.47         8.28        11.54         9.01         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6992 TCGA-CN-6995 TCGA-CQ-5323 TCGA-CQ-6221 TCGA-CR-5243 
        5.06         2.73         3.68        48.16        32.88        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-6470 TCGA-CR-6487 TCGA-CR-7380 TCGA-CR-7399 
       54.64        37.87        50.01         7.66        19.92         5.92 
TCGA-CV-5432 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5970 TCGA-CV-5977 TCGA-CV-6441 
      129.21        89.82        87.55        13.35        33.11         5.88 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6961 
        9.70         5.46        21.86        26.43       126.08         2.50 
TCGA-CV-7095 TCGA-CV-7102 TCGA-CV-7247 TCGA-CV-7406 TCGA-CV-7414 TCGA-CV-7415 
       18.81         1.84        18.97        58.06         0.46        22.85 
TCGA-CX-7082 TCGA-D6-6825 TCGA-DQ-5624 TCGA-DQ-7588 TCGA-DQ-7590 TCGA-DQ-7593 
       10.39         5.00        37.78        14.04        21.73        12.13 
TCGA-DQ-7594 TCGA-F7-7848 TCGA-F7-8298 TCGA-HD-7753 TCGA-HD-8314 TCGA-HL-7533 
       12.10         1.15         0.46         0.16         1.45        22.75 

$`11Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 
        9.30         6.25        27.78        57.90         6.12         5.88 
TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
        7.96        53.75        57.44         8.02        14.79         2.07 
TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        3.72         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7870 
       18.31        10.19        17.59        13.87        23.61        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       14.04        14.33         6.31        13.55        10.19         4.67 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 
       10.68         5.46        11.28        12.59        17.16        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4742 TCGA-CN-5355 
        7.89        14.33        11.44        26.63        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 
        9.50         5.69        12.39        16.21        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6016 TCGA-CN-6017 
       12.49         8.52        13.58         6.81         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 
        7.36         1.38         5.82         3.91         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
        1.51        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.35        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5247 TCGA-CR-5250 
       26.76        33.07        16.70        22.78        11.77        26.24 
TCGA-CR-6467 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       58.42        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 
        6.02        11.90        10.22        11.34        11.64        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
        0.99        31.96        34.06        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 
       29.85        29.52        30.54         7.10         5.13        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5435 
       29.92        48.36       135.29        17.16       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       19.20        17.95        76.47        84.39        64.73        17.06 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       17.75        57.07        48.59         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6937 TCGA-CV-6938 
       13.32        24.43        90.08         2.14        20.52         4.70 
TCGA-CV-6941 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
       11.24        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 
       28.31         4.14        64.80       126.12       111.12        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         5.23        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        31.33        26.20        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 
       11.87        47.97         2.10        36.13        18.41        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7416 TCGA-CV-7418 
       17.82       210.94        89.33         9.67        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7086 
      142.49        16.60         6.38        21.99        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        5.03         4.18        34.78        16.96        15.68        18.02 
TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7595 TCGA-H7-7774 TCGA-HD-7229 
       18.90        11.84         9.83        10.65         0.99         0.07 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.82         1.02         1.81         5.26         4.01         3.72 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              0.16               0.07 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            129.21             210.94 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             12.56              14.91 
[1] "0.2 - 129.2 (12.6)" "0.1 - 210.9 (14.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
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        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
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        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
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        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
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        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
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        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
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        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
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        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
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        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
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        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
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        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
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        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
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        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
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        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
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        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
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        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
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        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
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        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
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        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
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        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
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        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
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        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
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        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
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        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
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        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
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        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
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        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
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        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
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        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
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        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
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        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
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        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
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        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
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        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
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        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
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        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
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        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
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        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
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        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
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        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
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        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
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        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
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        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
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        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
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        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
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        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
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        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
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        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
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        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
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        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
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        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
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        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
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        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
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        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      9   51
  11Q LOSS WILD-TYPE   75  174
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  FEMALE                9                 75
  MALE                 51                174
D61V4, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  T1                5                 20
  T2               13                 64
  T3               11                 52
  T4               17                 84
D61V5, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  N0               19                 83
  N1                3                 29
  N2               19                 79
  N3                2                  3
D61V6, multiclass
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  I                  5                 13
  II                 6                 41
  III                5                 37
  IV                29                125
D61V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     21   39
  11Q LOSS WILD-TYPE   55  194
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                21                 55
  YES               39                194
D61V8, continuous
D61V9, continuous
D61V10, multiclass
                                             clus
vv                                            11Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               17
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     9
  CURRENT SMOKER                                            22
  LIFELONG NON-SMOKER                                       11
                                             clus
vv                                            11Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 64
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      47
  CURRENT SMOKER                                              75
  LIFELONG NON-SMOKER                                         53
D61V11, continuous

Clustering(62) Variable = 12p loss mutation analysis
D62V1, survival
                    sevent
clus2                  0   1
  12P LOSS MUTATED     6   6
  12P LOSS WILD-TYPE 179 115
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                12                294 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 6                115 
$`12P LOSS MUTATED`
TCGA-BA-5149 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-7269 TCGA-CN-5365 
        8.15         5.00        14.79        12.99         7.76        11.54 
TCGA-CR-7389 TCGA-CV-6441 TCGA-CV-7090 TCGA-CV-7100 TCGA-DQ-5631 TCGA-HD-8224 
       12.89         5.88       126.12         9.01        18.02         1.81 

$`12P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         9.07         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 
       57.44         8.02         2.07         3.72         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 
        9.04         4.60         4.37        18.31        10.19        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       13.87        23.61        20.98        37.87        14.04        14.33 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       16.21        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.18         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       33.07        16.70        22.78        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7101 
       64.80       111.12        18.81        12.66         7.99         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       47.97         2.10        36.13        18.41        58.06        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.02        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 
       37.78        34.78        16.96        15.68        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       21.73        11.84         9.83        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        1.15         0.46         0.99         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.02         1.45        22.75         5.26         4.01         3.72 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              1.81               0.07 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
            126.12             210.94 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
            10.275             14.910 
[1] "1.8 - 126.1 (10.3)" "0.1 - 210.9 (14.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      1   11
  12P LOSS WILD-TYPE   83  214
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  FEMALE                1                 83
  MALE                 11                214
D62V4, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  T1                0                 25
  T2                4                 73
  T3                3                 60
  T4                0                101
D62V5, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  N0                1                101
  N1                2                 30
  N2                2                 96
  N3                1                  4
D62V6, multiclass
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  I                  0                 18
  II                 1                 46
  III                3                 39
  IV                 3                151
D62V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      6    6
  12P LOSS WILD-TYPE   70  227
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                 6                 70
  YES                6                227
D62V8, continuous
D62V9, continuous
D62V10, multiclass
                                             clus
vv                                            12P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                3
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     1
  CURRENT SMOKER                                             6
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            12P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 78
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      55
  CURRENT SMOKER                                              91
  LIFELONG NON-SMOKER                                         62
D62V11, continuous

Clustering(63) Variable = 12q loss mutation analysis
D63V1, survival
                    sevent
clus2                  0   1
  12Q LOSS MUTATED     6   2
  12Q LOSS WILD-TYPE 179 119
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 8                298 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 2                119 
$`12Q LOSS MUTATED`
TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-7269 TCGA-CN-6024 TCGA-CR-6493 TCGA-CR-7390 
        5.00        14.79         7.76         7.36         9.27        29.82 
TCGA-CV-7090 TCGA-F7-7848 
      126.12         1.15 

$`12Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       53.75        57.44         8.02         2.07        12.99         3.72 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        23.61        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       14.04        14.33         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 
        3.19         9.07         6.61         6.18         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 
       14.96        26.76        33.07        16.70        22.78        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       11.51        15.75        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        27.02        12.89        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.92        48.36       135.29        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       47.28        19.20        17.95        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        2.50         4.14        64.80       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       47.47        36.00        31.33        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        58.06        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        5.00         5.03         4.18        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-8298 TCGA-H7-7774 
        9.83        12.13        12.10        10.65         0.46         0.99 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
       22.75         5.26         4.01         3.72 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              1.15               0.07 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
            126.12             210.94 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             8.515             14.330 
[1] "1.1 - 126.1 (8.5)"  "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      1    7
  12Q LOSS WILD-TYPE   83  218
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  FEMALE                1                 83
  MALE                  7                218
D63V4, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  T1                0                 25
  T2                2                 75
  T3                1                 62
  T4                3                 98
D63V5, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  N0                1                101
  N1                2                 30
  N2                2                 96
  N3                0                  5
D63V6, multiclass
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  I                  0                 18
  II                 1                 46
  III                1                 41
  IV                 4                150
D63V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      3    5
  12Q LOSS WILD-TYPE   73  228
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                 3                 73
  YES                5                228
D63V8, continuous
D63V9, continuous
[1] "Remove cluster labels:" "12Q LOSS MUTATED"      
clus
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 2                118 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5151 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5152         TCGA-BA-5555         TCGA-BA-5556 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-6871         TCGA-BB-4225         TCGA-BB-4227 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-7862         TCGA-BB-7864         TCGA-CN-4723 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4731         TCGA-CN-4736 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5367         TCGA-CN-5370 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-6011         TCGA-CN-6017 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6021         TCGA-CN-6023 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6994         TCGA-CN-6997 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5323         TCGA-CQ-5324         TCGA-CQ-5325 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5326         TCGA-CQ-5330         TCGA-CQ-5331 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-6218 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6221         TCGA-CQ-6223         TCGA-CQ-6224 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CR-6467 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6477         TCGA-CR-6478 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6487         TCGA-CR-7368 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7373         TCGA-CR-7376 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7385         TCGA-CR-7386         TCGA-CR-7391 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7395         TCGA-CR-7397 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7401         TCGA-CV-5430         TCGA-CV-5431 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5435         TCGA-CV-5441 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5442         TCGA-CV-5444         TCGA-CV-5966 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5977         TCGA-CV-6436 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6937 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6951         TCGA-CV-6952 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6960         TCGA-CV-6961         TCGA-CV-7091 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7095         TCGA-CV-7097         TCGA-CV-7099 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7100         TCGA-CV-7102         TCGA-CV-7235 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7254         TCGA-CV-7406 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7410         TCGA-CV-7414         TCGA-CV-7418 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7427         TCGA-CV-7430 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7434         TCGA-CX-7082 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CX-7085         TCGA-D6-6516         TCGA-D6-6517 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-DQ-5629         TCGA-DQ-5630 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-5631         TCGA-DQ-7588         TCGA-DQ-7589 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7590         TCGA-DQ-7591         TCGA-H7-7774 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-7754         TCGA-HL-7533         TCGA-IQ-7631 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IQ-7632 
"12Q LOSS WILD-TYPE" 
D63V10, multiclass
                                             clus
vv                                            12Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                1
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     1
  CURRENT SMOKER                                             5
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            12Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 80
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      55
  CURRENT SMOKER                                              92
  LIFELONG NON-SMOKER                                         63
D63V11, continuous

Clustering(64) Variable = 13q loss mutation analysis
D64V1, survival
                    sevent
clus2                  0   1
  13Q LOSS MUTATED    40  21
  13Q LOSS WILD-TYPE 145 100
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                61                245 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                21                100 
$`13Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-7269 
       15.16         9.07         6.12         8.02         2.07         7.76 
TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-7871 TCGA-CN-4725 
        9.04         4.37        17.59        23.61        14.04        10.19 
TCGA-CN-4730 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5374 
       11.28        11.44        26.63        28.47         8.28         9.01 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6021 TCGA-CN-6024 TCGA-CN-6988 TCGA-CQ-5323 
        7.50         4.70         9.07         7.36         1.38        48.16 
TCGA-CQ-5330 TCGA-CQ-6220 TCGA-CR-6472 TCGA-CR-6487 TCGA-CR-7364 TCGA-CR-7372 
       29.46        32.35        34.52         7.66        47.18        24.95 
TCGA-CR-7385 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5434 TCGA-CV-5441 TCGA-CV-6941 
       32.78        29.92        48.36       108.33        87.55        11.24 
TCGA-CV-6950 TCGA-CV-6954 TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7099 TCGA-CV-7100 
       15.06        65.82         4.14       111.12         7.99         9.01 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7263 
        1.84        52.31        21.76        36.00        26.20        18.41 
TCGA-CV-7406 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7435 TCGA-CV-7440 TCGA-CX-7082 
       58.06        25.94         0.07       142.49        21.99        10.39 
TCGA-CX-7219 TCGA-D6-6825 TCGA-DQ-7588 TCGA-DQ-7595 TCGA-F7-7848 TCGA-HD-7753 
       27.22         5.00        14.04        10.65         1.15         0.16 
TCGA-HD-7917 
        1.02 

$`13Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        37.28         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
       57.90         5.88         7.96        53.75        57.44         5.00 
TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 
       14.79        12.99         3.72         6.12        95.05         4.60 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7872 
       18.31        10.19        13.87        20.98        37.87        14.33 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
        6.31        13.55         4.67         6.38        10.68         5.46 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       13.58         6.81         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-6992 
        4.41         3.19         6.61         6.18         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5324 
        3.91         3.68         3.75         3.29         1.51        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5332 
       21.50         2.93        38.89        27.65        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
       11.21         4.21        28.60        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 
       13.25         4.21        14.96        26.76        33.07        16.70 
TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       22.78        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       58.42        50.01        39.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 
        6.02        11.90        10.22        11.34        11.64        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       11.51        15.75         9.27        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
       35.84         3.42         3.06        29.23         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7388 
       34.06        19.92        26.17        17.13        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CV-5430 
       30.54         7.10         5.13         5.92        35.41       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
       17.16       129.21        47.28        19.20        17.95        89.82 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       57.07        48.59        33.11         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       13.32        24.43         5.88        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 
        5.46        20.52         4.70        21.86        26.43       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       19.79        12.03        42.35        30.05         6.08        53.92 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 
       10.98         7.13         8.38        28.31         2.50        64.80 
TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7104 TCGA-CV-7178 
      126.12        18.81        12.66         5.23        12.89        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 
       10.75       114.94        56.68         4.73        47.47        31.33 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
        2.10        36.13        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7422 TCGA-CV-7423 
        9.67         0.46        22.85        25.02        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CX-7085 
       84.49        19.73         7.13        16.60         6.38        10.55 
TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
        7.76        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        5.03         4.18        37.78        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       18.02        18.90        21.73        11.84         9.83        12.13 
TCGA-DQ-7594 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-8224 
       12.10         0.46         0.99         0.07         0.82         1.81 
TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.45        22.75         5.26         4.01         3.72 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              0.07               0.07 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            142.49             210.94 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             14.04              14.33 
[1] "0.1 - 142.5 (14.0)" "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
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"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     11   50
  13Q LOSS WILD-TYPE   73  175
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  FEMALE               11                 73
  MALE                 50                175
D64V4, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  T1                7                 18
  T2               16                 61
  T3               11                 52
  T4               19                 82
D64V5, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  N0               20                 82
  N1                4                 28
  N2               21                 77
  N3                1                  4
D64V6, multiclass
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  I                  6                 12
  II                 8                 39
  III                6                 36
  IV                32                122
D64V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     13   48
  13Q LOSS WILD-TYPE   63  185
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO                13                 63
  YES               48                185
D64V8, continuous
D64V9, continuous
D64V10, multiclass
                                             clus
vv                                            13Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               21
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    12
  CURRENT SMOKER                                            21
  LIFELONG NON-SMOKER                                        6
                                             clus
vv                                            13Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 60
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      44
  CURRENT SMOKER                                              76
  LIFELONG NON-SMOKER                                         58
D64V11, continuous

Clustering(65) Variable = 14q loss mutation analysis
D65V1, survival
                    sevent
clus2                  0   1
  14Q LOSS MUTATED     9   6
  14Q LOSS WILD-TYPE 176 115
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                15                291 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                 6                115 
$`14Q LOSS MUTATED`
TCGA-BA-4078 TCGA-BA-6870 TCGA-BA-6871 TCGA-BB-7862 TCGA-CN-6992 TCGA-CQ-6221 
        9.07        14.79         2.07        17.59         2.73        32.88 
TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-7398 TCGA-CV-6935 TCGA-CV-6939 TCGA-CV-7406 
       50.01        34.52         5.13         9.70        21.86        58.06 
TCGA-DQ-5631 TCGA-DQ-7590 TCGA-HD-8224 
       18.02        21.73         1.81 

$`14Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44         5.00         8.02        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       10.19        13.87        23.61        20.98        37.87        14.04 
TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       14.33         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       33.80        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       33.07        16.70        22.78        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 
       37.87        26.24        58.42        39.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        7.10         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        13.32        24.43         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6940 TCGA-CV-6941 
        2.14         5.46        20.52         4.70        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 
        2.10        36.13        18.41        35.54        17.82       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 
        2.53         5.00         5.03         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 
       16.96        15.68        14.04        18.90        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 
       12.13        12.10        10.65         1.15         0.46         0.99 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8314 TCGA-HL-7533 
        0.07         0.16         0.82         1.02         1.45        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              1.81               0.07 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             58.06             210.94 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             17.59              14.04 
[1] "1.8 - 58.1 (17.6)"  "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D65V2, continuous
D65V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      2   13
  14Q LOSS WILD-TYPE   82  212
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  FEMALE                2                 82
  MALE                 13                212
D65V4, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  T1                0                 25
  T2                4                 73
  T3                4                 59
  T4                1                100
D65V5, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  N0                3                 99
  N1                0                 32
  N2                5                 93
  N3                0                  5
D65V6, multiclass
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  I                  0                 18
  II                 3                 44
  III                0                 42
  IV                 5                149
D65V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      5   10
  14Q LOSS WILD-TYPE   71  223
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO                 5                 71
  YES               10                223
D65V8, continuous
D65V9, continuous
D65V10, multiclass
                                             clus
vv                                            14Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                5
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     2
  CURRENT SMOKER                                             4
  LIFELONG NON-SMOKER                                        4
                                             clus
vv                                            14Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 76
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      54
  CURRENT SMOKER                                              93
  LIFELONG NON-SMOKER                                         60
D65V11, continuous

Clustering(66) Variable = 15q loss mutation analysis
D66V1, survival
                    sevent
clus2                  0   1
  15Q LOSS MUTATED    12  11
  15Q LOSS WILD-TYPE 173 110
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                23                283 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                11                110 
$`15Q LOSS MUTATED`
TCGA-BA-5153 TCGA-BA-6868 TCGA-BA-7269 TCGA-BB-7870 TCGA-CN-4725 TCGA-CN-6997 
       57.90         5.00         7.76        37.87        10.19         3.29 
TCGA-CN-6998 TCGA-CQ-7067 TCGA-CR-7402 TCGA-CV-5435 TCGA-CV-5970 TCGA-CV-6441 
        1.51        16.70        29.92        47.28        13.35         5.88 
TCGA-CV-6948 TCGA-CV-6954 TCGA-CV-7104 TCGA-CV-7242 TCGA-CV-7407 TCGA-CV-7432 
       42.35        65.82        12.89        36.00        35.54        84.49 
TCGA-CV-7438 TCGA-CX-7219 TCGA-D6-6517 TCGA-DQ-5631 TCGA-DQ-7592 
        6.38        27.22         8.22        18.02         9.83 

$`15Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        27.78         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       57.44         8.02        14.79         2.07        12.99         3.72 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 
       10.19        17.59        13.87        23.61        20.98        14.04 
TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
       14.33         6.31        13.55         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       13.58         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61         6.18         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.91         3.68         3.75        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       11.21         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 
       32.35        13.25         4.21        14.96        26.76        33.07 
TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       22.78        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 
        7.10         5.13         5.92        35.41        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
       17.16       129.21       108.33        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 
       87.55        76.47        84.39        64.73        17.06        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       57.07        48.59        33.11         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       13.32        24.43        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       19.79        12.03        15.06        30.05         6.08        53.92 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7178 
        9.01         5.23         1.84        52.31        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 
       10.75       114.94        56.68         4.73        47.47        31.33 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 
       47.97         2.10        36.13        18.41        58.06        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7434 
      156.49        54.90         3.48        16.27        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
      142.49        16.60        21.99        10.39        10.55         7.76 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       13.25        10.68         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 
        4.18        37.78        34.78        16.96        15.68        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 
       18.90        21.73        11.84        12.13        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        1.15         0.46         0.99         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.02         1.81         1.45        22.75         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              1.51               0.07 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             84.49             210.94 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             16.70              14.04 
[1] "1.5 - 84.5 (16.7)"  "0.1 - 210.9 (14.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D66V2, continuous
D66V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      6   17
  15Q LOSS WILD-TYPE   78  208
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  FEMALE                6                 78
  MALE                 17                208
D66V4, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  T1                2                 23
  T2                7                 70
  T3                4                 59
  T4                6                 95
D66V5, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  N0                7                 95
  N1                1                 31
  N2                6                 92
  N3                1                  4
D66V6, multiclass
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  I                  2                 16
  II                 4                 43
  III                3                 39
  IV                 9                145
D66V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      6   17
  15Q LOSS WILD-TYPE   70  216
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO                 6                 70
  YES               17                216
D66V8, continuous
D66V9, continuous
D66V10, multiclass
                                             clus
vv                                            15Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                8
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     2
  CURRENT SMOKER                                             6
  LIFELONG NON-SMOKER                                        6
                                             clus
vv                                            15Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 73
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      54
  CURRENT SMOKER                                              91
  LIFELONG NON-SMOKER                                         58
D66V11, continuous

Clustering(67) Variable = 16p loss mutation analysis
D67V1, survival
                    sevent
clus2                  0   1
  16P LOSS MUTATED     6   5
  16P LOSS WILD-TYPE 179 116
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                11                295 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 5                116 
$`16P LOSS MUTATED`
TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-7269 TCGA-BB-7870 TCGA-CR-6473 TCGA-CR-7374 
       13.64         9.07         7.76        37.87        36.99         0.99 
TCGA-CR-7399 TCGA-CV-5436 TCGA-CV-7418 TCGA-CV-7424 TCGA-HD-8224 
        5.92        19.20        25.94        14.86         1.81 

$`16P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       15.16         9.30        37.28         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        5.00         8.02        14.79         2.07        12.99         3.72 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7871 
       10.19        17.59        13.87        23.61        20.98        14.04 
TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       14.33         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 
       29.46        33.80        10.42        11.21         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 
       14.96        26.76        33.07        16.70        22.78        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       39.52        34.52        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 
       35.84         3.42         3.06        24.95        29.23        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.54         7.10         5.13        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        40.96        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       36.00        31.33        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       58.06        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
        0.46        22.85        25.02         0.07        34.09       100.54 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       37.78        34.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 
       10.65         1.15         0.46         0.99         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        0.82         1.02         1.45        22.75         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              0.99               0.07 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             37.87             210.94 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             13.64              14.33 
[1] "1.0 - 37.9 (13.6)"  "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      2    9
  16P LOSS WILD-TYPE   82  216
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  FEMALE                2                 82
  MALE                  9                216
D67V4, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  T1                0                 25
  T2                1                 76
  T3                4                 59
  T4                2                 99
D67V5, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  N0                1                101
  N1                1                 31
  N2                5                 93
  N3                0                  5
D67V6, multiclass
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  I                  0                 18
  II                 0                 47
  III                1                 41
  IV                 6                148
D67V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      2    9
  16P LOSS WILD-TYPE   74  224
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO                 2                 74
  YES                9                224
D67V8, continuous
D67V9, continuous
D67V10, multiclass
                                             clus
vv                                            16P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                4
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     0
  CURRENT SMOKER                                             6
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            16P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 77
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      56
  CURRENT SMOKER                                              91
  LIFELONG NON-SMOKER                                         63
D67V11, continuous

Clustering(68) Variable = 16q loss mutation analysis
D68V1, survival
                    sevent
clus2                  0   1
  16Q LOSS MUTATED    18   7
  16Q LOSS WILD-TYPE 167 114
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                25                281 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 7                114 
$`16Q LOSS MUTATED`
TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5153 TCGA-BA-5559 TCGA-BB-4225 TCGA-BB-7861 
       13.64         9.07        57.90        57.44         4.60        10.19 
TCGA-BB-7862 TCGA-BB-7866 TCGA-BB-7870 TCGA-CN-5360 TCGA-CN-6021 TCGA-CR-5243 
       17.59        20.98        37.87        28.47         9.07        84.23 
TCGA-CR-6467 TCGA-CR-6473 TCGA-CR-7398 TCGA-CR-7402 TCGA-CV-5443 TCGA-CV-7414 
       58.42        36.99         5.13        29.92        84.39         0.46 
TCGA-CV-7418 TCGA-CV-7424 TCGA-D6-6827 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       25.94        14.86         4.18        18.90        21.73        11.84 
TCGA-HD-8224 
        1.81 

$`16Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       15.16         9.30        37.28         8.15         6.25        27.78 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 
        6.12         5.88         7.96        53.75         5.00         8.02 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 
       14.79         2.07        12.99         3.72         7.76         6.12 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7863 TCGA-BB-7864 
       95.05         9.04         4.37        18.31        13.87        23.61 
TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
       14.04        14.33         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61         6.18         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       33.80        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5247 TCGA-CR-5248 
       26.76        33.07        16.70        22.78        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 
       37.87        26.24        50.01        39.52        34.52        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        7.10         5.92        35.41        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       87.55        76.47        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       57.07        48.59        33.11         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       13.32        24.43         5.88        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
        2.10        36.13        18.41        58.06        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 
      210.94        89.33         9.67        22.85        25.02         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
       34.09       100.54        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        5.03        37.78        34.78        16.96        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
       14.04         9.83        12.13        12.10        10.65         1.15 
TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 
        0.46         0.99         0.07         0.16         0.82         1.02 
TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.45        22.75         5.26         4.01         3.72 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              0.46               0.07 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             84.39             210.94 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             18.90              13.87 
[1] "0.5 - 84.4 (18.9)"  "0.1 - 210.9 (13.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      3   22
  16Q LOSS WILD-TYPE   81  203
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  FEMALE                3                 81
  MALE                 22                203
D68V4, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  T1                2                 23
  T2                3                 74
  T3                4                 59
  T4                4                 97
D68V5, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  N0                5                 97
  N1                2                 30
  N2                5                 93
  N3                0                  5
D68V6, multiclass
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  I                  1                 17
  II                 1                 46
  III                3                 39
  IV                 7                147
D68V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      4   21
  16Q LOSS WILD-TYPE   72  212
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO                 4                 72
  YES               21                212
D68V8, continuous
D68V9, continuous
D68V10, multiclass
                                             clus
vv                                            16Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               10
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     3
  CURRENT SMOKER                                             8
  LIFELONG NON-SMOKER                                        4
                                             clus
vv                                            16Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 71
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      53
  CURRENT SMOKER                                              89
  LIFELONG NON-SMOKER                                         60
D68V11, continuous

Clustering(69) Variable = 17p loss mutation analysis
D69V1, survival
                    sevent
clus2                  0   1
  17P LOSS MUTATED    25  18
  17P LOSS WILD-TYPE 160 103
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                43                263 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                18                103 
$`17P LOSS MUTATED`
TCGA-BA-5149 TCGA-BA-6868 TCGA-BA-6871 TCGA-BB-7862 TCGA-BB-7866 TCGA-BB-7870 
        8.15         5.00         2.07        17.59        20.98        37.87 
TCGA-BB-7871 TCGA-CN-4725 TCGA-CN-4730 TCGA-CN-4735 TCGA-CN-5360 TCGA-CN-5364 
       14.04        10.19        11.28        12.13        28.47        16.21 
TCGA-CN-6988 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CR-6472 TCGA-CR-6481 
        1.38        34.75        13.25        14.96        34.52        10.22 
TCGA-CR-7364 TCGA-CR-7371 TCGA-CR-7390 TCGA-CR-7398 TCGA-CV-5439 TCGA-CV-5970 
       47.18         3.06        29.82         5.13        17.95        13.35 
TCGA-CV-6441 TCGA-CV-6953 TCGA-CV-6961 TCGA-CV-7102 TCGA-CV-7180 TCGA-CV-7245 
        5.88        53.92         2.50         1.84        10.75        26.20 
TCGA-CV-7247 TCGA-CV-7253 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7423 TCGA-CV-7428 
       18.97        11.87        18.41        58.06       100.54        54.90 
TCGA-CV-7435 TCGA-CV-7440 TCGA-CX-7086 TCGA-D6-6823 TCGA-DQ-5629 TCGA-DQ-7591 
      142.49        21.99         7.76         7.82        16.96        11.84 
TCGA-DQ-7595 
       10.65 

$`17P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         9.07         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44         8.02        14.79        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 
       10.19        13.87        23.61        14.33         6.31        13.55 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4731 TCGA-CN-4733 
        4.67         6.38        10.68         5.46        12.59        17.16 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 
       13.05         9.17         9.50         5.69        12.39         8.28 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        6.18         7.36         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6224 
       11.21         4.21        28.60        32.35        32.88        32.35 
TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 
        4.21        26.76        33.07        16.70        22.78        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       39.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
        9.27        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 
      129.21       108.33        47.28        19.20        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 
       76.47        84.39        64.73        17.06        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6954 
       12.03        42.35        15.06        30.05         6.08        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 
       10.98         7.13         8.38        28.31         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 
        5.23        52.31        12.89        21.76        71.21       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7248 
       56.68         4.73        47.47        36.00        31.33        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7407 
       95.34         4.96        47.97         2.10        36.13        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       17.82       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 
       25.02        25.94         0.07        34.09        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
      156.49         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 
       16.60         6.38        10.39        10.55        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
       10.68         8.22         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 
       37.78        34.78        15.68        18.02        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-F7-7848 TCGA-F7-8298 
       21.73         9.83        12.13        12.10         1.15         0.46 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        0.99         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.45        22.75         5.26         4.01         3.72 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              1.38               0.07 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            142.49             210.94 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             14.04              14.33 
[1] "1.4 - 142.5 (14.0)" "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED      7   36
  17P LOSS WILD-TYPE   77  189
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  FEMALE                7                 77
  MALE                 36                189
D69V4, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  T1                1                 24
  T2               10                 67
  T3               13                 50
  T4               11                 90
D69V5, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  N0               16                 86
  N1                3                 29
  N2               12                 86
  N3                0                  5
D69V6, multiclass
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  I                  0                 18
  II                10                 37
  III                7                 35
  IV                18                136
D69V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED      8   35
  17P LOSS WILD-TYPE   68  198
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO                 8                 68
  YES               35                198
D69V8, continuous
D69V9, continuous
D69V10, multiclass
                                             clus
vv                                            17P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               10
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     8
  CURRENT SMOKER                                            18
  LIFELONG NON-SMOKER                                        5
                                             clus
vv                                            17P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 71
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      48
  CURRENT SMOKER                                              79
  LIFELONG NON-SMOKER                                         59
D69V11, continuous

Clustering(70) Variable = 17q loss mutation analysis
D70V1, survival
                    sevent
clus2                  0   1
  17Q LOSS MUTATED     4   0
  17Q LOSS WILD-TYPE 181 121
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 4                302 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 0                121 
$`17Q LOSS MUTATED`
TCGA-BA-6868 TCGA-BA-6871 TCGA-CN-6011 TCGA-D6-6823 
        5.00         2.07         7.50         7.82 

$`17Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       53.75        57.44         8.02        14.79        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        23.61        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       37.87        14.04        14.33         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
        4.21        14.96        26.76        33.07        16.70        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        13.32        24.43         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       31.33        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 
       11.87        47.97         2.10        36.13        18.41        58.06 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       35.54        17.82       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
       22.85        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
       10.68         8.22         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       37.78        34.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 
       18.90        21.73        11.84         9.83        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 
       10.65         1.15         0.46         0.99         0.07         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 
        0.82         1.02         1.81         1.45        22.75         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              2.07               0.07 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              7.82             210.94 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              6.25              14.56 
[1] "2.1 - 7.8 (6.2)"    "0.1 - 210.9 (14.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
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        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
[1] "hr="     "1200000"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      0    4
  17Q LOSS WILD-TYPE   84  221
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  FEMALE                0                 84
  MALE                  4                221
D70V4, multiclass
[1] "Remove cluster labels:" "17Q LOSS MUTATED"      
clus
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 2                264 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4077 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5149         TCGA-BA-5151         TCGA-BA-5152 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5153         TCGA-BA-5555         TCGA-BA-5556 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5557         TCGA-BA-6869         TCGA-BA-6873 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-7269         TCGA-BB-4217         TCGA-BB-4223 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-4224         TCGA-BB-4227         TCGA-BB-4228 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7870         TCGA-BB-7871 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7872         TCGA-CN-4722         TCGA-CN-4723 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4725         TCGA-CN-4726         TCGA-CN-4727 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4728         TCGA-CN-4729         TCGA-CN-4730 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4731         TCGA-CN-4733         TCGA-CN-4735 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4736         TCGA-CN-4737         TCGA-CN-4738 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6012         TCGA-CN-6013 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6022 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-6467         TCGA-CR-6470 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6474         TCGA-CR-6484 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6487         TCGA-CR-6488         TCGA-CR-6491 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6492         TCGA-CR-6493         TCGA-CR-7364 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7365         TCGA-CR-7367         TCGA-CR-7368 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7369         TCGA-CR-7371         TCGA-CR-7372 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7376         TCGA-CR-7377 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7390         TCGA-CR-7391         TCGA-CR-7392 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7393         TCGA-CR-7394         TCGA-CR-7395 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7397         TCGA-CR-7398         TCGA-CR-7399 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7401         TCGA-CV-5430         TCGA-CV-5431 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6938         TCGA-CV-6939         TCGA-CV-6940 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6941         TCGA-CV-6942         TCGA-CV-6943 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6954         TCGA-CV-6955         TCGA-CV-6956 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6959         TCGA-CV-6960         TCGA-CV-6961 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6962         TCGA-CV-7089         TCGA-CV-7090 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7091         TCGA-CV-7095         TCGA-CV-7097 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7099         TCGA-CV-7100         TCGA-CV-7101 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7102         TCGA-CV-7103         TCGA-CV-7104 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7177         TCGA-CV-7178         TCGA-CV-7180 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7183         TCGA-CV-7235         TCGA-CV-7236 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7238         TCGA-CV-7242         TCGA-CV-7243 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7406         TCGA-CV-7407 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7409         TCGA-CV-7410         TCGA-CV-7411 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7413         TCGA-CV-7414         TCGA-CV-7415 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7416         TCGA-CV-7418         TCGA-CV-7421 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7422         TCGA-CV-7423         TCGA-CV-7424 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7425         TCGA-CV-7427         TCGA-CV-7428 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7429         TCGA-CV-7430         TCGA-CV-7432 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7433         TCGA-CV-7434         TCGA-CV-7435 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7437         TCGA-CV-7438         TCGA-CV-7440 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CX-7082         TCGA-CX-7085         TCGA-CX-7086 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CX-7219         TCGA-D6-6515         TCGA-D6-6516 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6517         TCGA-D6-6824         TCGA-D6-6825 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6826         TCGA-D6-6827         TCGA-F7-7848 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7831 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-7832         TCGA-HD-7917         TCGA-HD-8224 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
D70V5, multiclass
[1] "Remove cluster labels:" "17Q LOSS MUTATED"      
clus
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 2                235 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4077 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5149         TCGA-BA-5151         TCGA-BA-5152 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6873         TCGA-BA-7269 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-4227         TCGA-BB-7861         TCGA-BB-7862 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7863         TCGA-BB-7864         TCGA-BB-7870 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4737         TCGA-CN-4738 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4739         TCGA-CN-4740         TCGA-CN-4741 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4742         TCGA-CN-5355         TCGA-CN-5356 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5358         TCGA-CN-5359         TCGA-CN-5360 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5363         TCGA-CN-5364         TCGA-CN-5365 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5366         TCGA-CN-5367         TCGA-CN-5369 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5370         TCGA-CN-5373         TCGA-CN-5374 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6010         TCGA-CN-6012         TCGA-CN-6013 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6022 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5332 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5333         TCGA-CQ-5334         TCGA-CQ-6218 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6220         TCGA-CQ-6223         TCGA-CQ-6224 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6225         TCGA-CQ-6227         TCGA-CQ-6228 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6229         TCGA-CQ-7065         TCGA-CQ-7067 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-7068         TCGA-CR-5249         TCGA-CR-6467 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6474 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7371 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7372         TCGA-CR-7373         TCGA-CR-7376 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7377         TCGA-CR-7379         TCGA-CR-7380 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7382         TCGA-CR-7383         TCGA-CR-7386 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7390         TCGA-CR-7391         TCGA-CR-7392 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7393         TCGA-CR-7394         TCGA-CR-7395 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7397         TCGA-CR-7398         TCGA-CR-7399 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7401         TCGA-CV-5430         TCGA-CV-5431 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5432         TCGA-CV-5434         TCGA-CV-5435 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5436         TCGA-CV-5439         TCGA-CV-5440 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5441         TCGA-CV-5442         TCGA-CV-5443 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5444         TCGA-CV-5966         TCGA-CV-5970 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5971         TCGA-CV-5973         TCGA-CV-5976 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5977         TCGA-CV-5978         TCGA-CV-5979 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6003         TCGA-CV-6433         TCGA-CV-6436 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6441         TCGA-CV-6933         TCGA-CV-6934 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6935         TCGA-CV-6936         TCGA-CV-6937 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6939         TCGA-CV-6940         TCGA-CV-6941 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6945         TCGA-CV-6948         TCGA-CV-6950 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6951         TCGA-CV-6952         TCGA-CV-6953 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-7089         TCGA-CV-7091 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7100         TCGA-CV-7102         TCGA-CV-7103 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7178         TCGA-CV-7183 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7235         TCGA-CV-7236         TCGA-CV-7238 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7242         TCGA-CV-7243         TCGA-CV-7245 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7247         TCGA-CV-7248         TCGA-CV-7250 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7252         TCGA-CV-7253         TCGA-CV-7255 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7406         TCGA-CV-7409 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7410         TCGA-CV-7411         TCGA-CV-7413 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7414         TCGA-CV-7415         TCGA-CV-7418 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7424 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CX-7082         TCGA-CX-7085 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6824 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-H7-7774 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-7229         TCGA-HD-7753         TCGA-HD-7754 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-7831         TCGA-HD-7832         TCGA-HD-7917 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-IQ-7630         TCGA-IQ-7631 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IQ-7632 
"17Q LOSS WILD-TYPE" 
D70V6, multiclass
[1] "Remove cluster labels:" "17Q LOSS MUTATED"      
clus
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 2                259 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4077 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5149         TCGA-BA-5151         TCGA-BA-5152 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6873         TCGA-BA-7269 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-4227         TCGA-BB-4228         TCGA-BB-7861 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7862         TCGA-BB-7863         TCGA-BB-7864 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-7870         TCGA-BB-7871         TCGA-BB-7872 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4737 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6012 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6013         TCGA-CN-6016         TCGA-CN-6017 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6018         TCGA-CN-6019         TCGA-CN-6020 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6223 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6224         TCGA-CQ-6225         TCGA-CQ-6227 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6228         TCGA-CQ-6229         TCGA-CQ-7065 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-7067         TCGA-CQ-7068         TCGA-CR-5249 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6467         TCGA-CR-6470         TCGA-CR-6471 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6484         TCGA-CR-6487 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7376         TCGA-CR-7377         TCGA-CR-7379 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7380         TCGA-CR-7382         TCGA-CR-7383 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7386         TCGA-CR-7390         TCGA-CR-7391 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7392         TCGA-CR-7393         TCGA-CR-7394 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7395         TCGA-CR-7397         TCGA-CR-7398 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7399         TCGA-CR-7401         TCGA-CV-5430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6824 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6825         TCGA-D6-6826         TCGA-D6-6827 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-F7-8298         TCGA-H7-7774 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-7229         TCGA-HD-7753         TCGA-HD-7754 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-7831         TCGA-HD-7832         TCGA-HD-7917 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-IQ-7630         TCGA-IQ-7631 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IQ-7632 
"17Q LOSS WILD-TYPE" 
D70V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      3    1
  17Q LOSS WILD-TYPE   73  232
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO                 3                 73
  YES                1                232
D70V8, continuous
D70V9, continuous
D70V10, multiclass
                                             clus
vv                                            17Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                3
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     0
  CURRENT SMOKER                                             1
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            17Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 78
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      56
  CURRENT SMOKER                                              96
  LIFELONG NON-SMOKER                                         64
D70V11, continuous

Clustering(71) Variable = 18p loss mutation analysis
D71V1, survival
                    sevent
clus2                  0   1
  18P LOSS MUTATED    16  13
  18P LOSS WILD-TYPE 169 108
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                29                277 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                13                108 
$`18P LOSS MUTATED`
TCGA-BA-6868 TCGA-BA-6870 TCGA-CN-4727 TCGA-CN-4735 TCGA-CN-6995 TCGA-CN-6996 
        5.00        14.79         6.38        12.13         3.68         3.75 
TCGA-CQ-6223 TCGA-CR-7367 TCGA-CR-7374 TCGA-CV-5435 TCGA-CV-6003 TCGA-CV-6933 
       34.75        47.34         0.99        47.28        40.96        90.08 
TCGA-CV-6940 TCGA-CV-6948 TCGA-CV-6953 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7091 
       26.43        42.35        53.92        28.31         2.50       111.12 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7245 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7429 
       52.31        12.89        26.20        36.13        35.54         3.48 
TCGA-CX-7219 TCGA-DQ-5629 TCGA-F7-7848 TCGA-HD-7229 TCGA-IQ-7630 
       27.22        16.96         1.15         0.07         5.26 

$`18P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       53.75        57.44         8.02         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
       18.31        10.19        17.59        13.87        23.61        20.98 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       37.87        14.04        14.33         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        4.67        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        2.73         3.91         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       10.42        11.21         4.21        28.60        32.35        32.88 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 
       32.35        13.25         4.21        14.96        26.76        33.07 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       16.70        22.78        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       47.18        39.12        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       24.95        29.23        31.96        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
       17.16       129.21       108.33        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       13.32        24.43         5.88         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
       20.52         4.70        21.86        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6955 
       12.03        15.06        30.05         6.08        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 
        7.13         8.38         4.14        64.80       126.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7177 
       12.66         7.99         9.01         5.23         1.84        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        31.33        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7409 
       11.87        47.97         2.10        18.41        58.06        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
      156.49        54.90        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
        7.76        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 
        5.00         5.03         4.18        37.78        34.78        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       18.02        14.04        18.90        21.73        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7753 
       12.13        12.10        10.65         0.46         0.99         0.16 
TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7631 
        0.82         1.02         1.81         1.45        22.75         4.01 
TCGA-IQ-7632 
        3.72 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              0.07               0.07 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
            111.12             210.94 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             26.20              13.87 
[1] "0.1 - 111.1 (26.2)" "0.1 - 210.9 (13.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D71V2, continuous
D71V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     10   19
  18P LOSS WILD-TYPE   74  206
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  FEMALE               10                 74
  MALE                 19                206
D71V4, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  T1                1                 24
  T2                8                 69
  T3                5                 58
  T4               11                 90
D71V5, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  N0               11                 91
  N1                5                 27
  N2                7                 91
  N3                1                  4
D71V6, multiclass
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  I                  1                 17
  II                 4                 43
  III                5                 37
  IV                15                139
D71V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      8   21
  18P LOSS WILD-TYPE   68  212
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO                 8                 68
  YES               21                212
D71V8, continuous
D71V9, continuous
D71V10, multiclass
                                             clus
vv                                            18P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                9
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     3
  CURRENT SMOKER                                             9
  LIFELONG NON-SMOKER                                        7
                                             clus
vv                                            18P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 72
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      53
  CURRENT SMOKER                                              88
  LIFELONG NON-SMOKER                                         57
D71V11, continuous

Clustering(72) Variable = 18q loss mutation analysis
D72V1, survival
                    sevent
clus2                  0   1
  18Q LOSS MUTATED    46  40
  18Q LOSS WILD-TYPE 139  81
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                86                220 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                40                 81 
$`18Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6872 TCGA-BB-4224 
       15.16         9.30         5.00        14.79        12.99         9.04 
TCGA-BB-7862 TCGA-BB-7872 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       17.59        14.33        13.55        10.19         4.67         6.38 
TCGA-CN-4730 TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-5355 TCGA-CN-5363 TCGA-CN-5364 
       11.28        12.13         7.89         9.17         8.28        16.21 
TCGA-CN-5367 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6988 TCGA-CN-6995 
       11.57         8.52        13.58         7.50         1.38         3.68 
TCGA-CN-6996 TCGA-CQ-5326 TCGA-CQ-6218 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6228 
        3.75         2.93        28.60        34.75        13.25        14.96 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7373 TCGA-CR-7374 
       33.07        16.70         9.27        39.12        29.23         0.99 
TCGA-CR-7386 TCGA-CR-7399 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5966 
       47.01         5.92        47.28        17.95        87.55        17.06 
TCGA-CV-5970 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 
       13.35        57.07        48.59        33.11        43.23        40.96 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6940 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6953 
        5.88        90.08        26.43        12.03        42.35        53.92 
TCGA-CV-6954 TCGA-CV-6960 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7101 
       65.82        28.31       126.12       111.12        12.66         5.23 
TCGA-CV-7104 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7253 
       12.89        31.33        26.20        18.97        17.10        11.87 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7423 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7434 
       35.54        17.82       100.54         3.48        16.27         7.13 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6823 
        6.38        21.99         7.76        27.22        10.68         7.82 
TCGA-D6-6825 TCGA-DQ-5629 TCGA-DQ-7595 TCGA-F7-7848 TCGA-HD-7229 TCGA-HD-7917 
        5.00        16.96        10.65         1.15         0.07         1.02 
TCGA-HD-8224 TCGA-IQ-7630 
        1.81         5.26 

$`18Q LOSS WILD-TYPE`
TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       13.64        37.28         9.07         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 
        8.02         2.07         3.72         7.76         6.12        95.05 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7864 
        4.60         4.37        18.31        10.19        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-CN-4722 TCGA-CN-4728 TCGA-CN-4729 
       20.98        37.87        14.04         6.31        10.68         5.46 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.59        17.16        12.99        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       28.77        13.05         9.50         5.69        12.39        28.47 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 
       11.54        11.84        12.49         9.01         6.81         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 
        9.07         6.61         6.18         7.36         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.91         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 
        4.21        32.35        32.88        32.35         4.21        26.76 
TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       22.78        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7367 
        7.66        12.46        11.51        15.75        47.18        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7376 
       40.90        35.84         3.42         3.06        24.95        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7388 
       34.06        19.92        26.17        17.13        32.78        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
       30.54         7.10         5.13        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5440 
      135.29        17.16       129.21       108.33        19.20        89.82 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5971 TCGA-CV-5978 TCGA-CV-6433 
       76.47        84.39        64.73        17.75         7.07        13.32 
TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       24.43         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 
       21.86        11.24       126.08        19.79        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 
        6.08        10.98         7.13         8.38         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 
       64.80        18.81         7.99         9.01         1.84        52.31 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 
       47.47        36.00        95.34         4.96        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       36.13        18.41        58.06       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7432 TCGA-CV-7433 
       14.86        56.48       156.49        54.90        84.49        19.73 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6517 
      142.49        16.60        10.39        10.55        13.25         8.22 
TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 
        2.53         5.03         4.18        37.78        34.78        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       18.02        14.04        18.90        21.73        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7753 TCGA-HD-7754 
       12.13        12.10         0.46         0.99         0.16         0.82 
TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 
        1.45        22.75         4.01         3.72 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.07               0.07 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            126.12             210.94 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             13.45              14.96 
[1] "0.1 - 126.1 (13.4)" "0.1 - 210.9 (15.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
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        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D72V2, continuous
D72V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     19   67
  18Q LOSS WILD-TYPE   65  158
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  FEMALE               19                 65
  MALE                 67                158
D72V4, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  T1                8                 17
  T2               20                 57
  T3               20                 43
  T4               32                 69
D72V5, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  N0               29                 73
  N1               11                 21
  N2               29                 69
  N3                3                  2
D72V6, multiclass
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  I                  7                 11
  II                12                 35
  III               13                 29
  IV                48                106
D72V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     22   64
  18Q LOSS WILD-TYPE   54  169
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO                22                 54
  YES               64                169
D72V8, continuous
D72V9, continuous
D72V10, multiclass
                                             clus
vv                                            18Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               29
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     8
  CURRENT SMOKER                                            25
  LIFELONG NON-SMOKER                                       19
                                             clus
vv                                            18Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 52
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      48
  CURRENT SMOKER                                              72
  LIFELONG NON-SMOKER                                         45
D72V11, continuous

Clustering(73) Variable = 19p loss mutation analysis
D73V1, survival
                    sevent
clus2                  0   1
  19P LOSS MUTATED    11  15
  19P LOSS WILD-TYPE 174 106
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                26                280 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                15                106 
$`19P LOSS MUTATED`
TCGA-BA-5149 TCGA-BA-5153 TCGA-BA-6868 TCGA-CN-4725 TCGA-CN-5363 TCGA-CN-5370 
        8.15        57.90         5.00        10.19         8.28         8.52 
TCGA-CN-6992 TCGA-CN-6995 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CR-7364 
        2.73         3.68        32.35        34.75        13.25        47.18 
TCGA-CR-7365 TCGA-CR-7370 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6941 TCGA-CV-6945 
       39.12         3.42         5.88        90.08        11.24        12.03 
TCGA-CV-6956 TCGA-CV-7095 TCGA-CV-7415 TCGA-CV-7430 TCGA-CV-7440 TCGA-D6-6825 
        7.13        18.81        22.85        16.27        21.99         5.00 
TCGA-DQ-7592 TCGA-F7-7848 
        9.83         1.15 

$`19P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         9.07         6.25 
TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       27.78         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        8.02        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        23.61        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 
       14.04        14.33         6.31        13.55         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5373 
       16.21        11.54        11.84        11.57        12.49        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6996 
        6.18         7.36         1.38         5.82         3.91         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 
        4.21        28.60        32.88        32.35         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 
       26.76        33.07        16.70        22.78        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 
       15.75         9.27        47.34        40.90        35.84         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23         0.99        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6934 
        7.07        43.23        40.96        13.32        24.43         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
      126.08        19.79        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       53.92        65.82        10.98         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 
        4.14        64.80       126.12       111.12        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       36.00        31.33        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       58.06        35.54        17.82       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
        0.46        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 
       14.86        56.48       156.49        54.90         3.48        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CX-7082 
       19.73         7.13       142.49        16.60         6.38        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 
        7.82         2.53         5.03         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
       16.96        15.68        18.02        14.04        18.90        21.73 
TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-8298 TCGA-H7-7774 
       11.84        12.13        12.10        10.65         0.46         0.99 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
       22.75         5.26         4.01         3.72 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              1.15               0.07 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             90.08             210.94 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            10.715             14.825 
[1] "1.1 - 90.1 (10.7)"  "0.1 - 210.9 (14.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
[1] "hr=" "2"  
D73V2, continuous
D73V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      2   24
  19P LOSS WILD-TYPE   82  201
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  FEMALE                2                 82
  MALE                 24                201
D73V4, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  T1                1                 24
  T2                5                 72
  T3               10                 53
  T4                7                 94
D73V5, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  N0               11                 91
  N1                4                 28
  N2                4                 94
  N3                1                  4
D73V6, multiclass
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  I                  1                 17
  II                 4                 43
  III                8                 34
  IV                 9                145
D73V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      5   21
  19P LOSS WILD-TYPE   71  212
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO                 5                 71
  YES               21                212
D73V8, continuous
D73V9, continuous
D73V10, multiclass
                                             clus
vv                                            19P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                7
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     3
  CURRENT SMOKER                                            12
  LIFELONG NON-SMOKER                                        3
                                             clus
vv                                            19P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 74
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      53
  CURRENT SMOKER                                              85
  LIFELONG NON-SMOKER                                         61
D73V11, continuous

Clustering(74) Variable = 19q loss mutation analysis
D74V1, survival
                    sevent
clus2                  0   1
  19Q LOSS MUTATED     9  10
  19Q LOSS WILD-TYPE 176 111
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                19                287 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                10                111 
$`19Q LOSS MUTATED`
TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 TCGA-CN-4725 TCGA-CN-5363 TCGA-CN-6992 
        5.00        14.79         2.07        10.19         8.28         2.73 
TCGA-CN-6997 TCGA-CQ-6220 TCGA-CR-7365 TCGA-CR-7370 TCGA-CV-6441 TCGA-CV-6933 
        3.29        32.35        39.12         3.42         5.88        90.08 
TCGA-CV-6941 TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-7261 TCGA-CV-7415 TCGA-CV-7430 
       11.24         7.13        28.31        36.13        22.85        16.27 
TCGA-D6-6517 
        8.22 

$`19Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       53.75        57.44         8.02        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       10.19        17.59        13.87        23.61        20.98        37.87 
TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 
       14.04        14.33         6.31        13.55         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       13.58         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 
        6.61         6.18         7.36         1.38         5.82         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.68         3.75         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
       11.21         4.21        28.60        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 
       13.25         4.21        14.96        26.76        33.07        16.70 
TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       22.78        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       47.34        40.90        35.84         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       40.96        13.32        24.43         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 
       20.52         4.70        21.86        26.43       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
       65.82        10.98         8.38         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       31.33        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 
       11.87        47.97         2.10        18.41        58.06        35.54 
TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 
       17.82       210.94        89.33         9.67         0.46        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
      156.49        54.90         3.48        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6824 
        7.76        27.22        13.25        10.68         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        5.00         5.03         4.18        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 
       15.68        18.02        14.04        18.90        21.73        11.84 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 
        9.83        12.13        12.10        10.65         1.15         0.46 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 
        0.99         0.07         0.16         0.82         1.02         1.81 
TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.45        22.75         5.26         4.01         3.72 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              2.07               0.07 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             90.08             210.94 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             10.19              14.33 
[1] "2.1 - 90.1 (10.2)"  "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D74V2, continuous
D74V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      2   17
  19Q LOSS WILD-TYPE   82  208
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  FEMALE                2                 82
  MALE                 17                208
D74V4, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  T1                0                 25
  T2                1                 76
  T3                9                 54
  T4                5                 96
D74V5, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  N0                9                 93
  N1                2                 30
  N2                3                 95
  N3                1                  4
D74V6, multiclass
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  I                  0                 18
  II                 1                 46
  III                7                 35
  IV                 7                147
D74V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      5   14
  19Q LOSS WILD-TYPE   71  219
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO                 5                 71
  YES               14                219
D74V8, continuous
D74V9, continuous
D74V10, multiclass
                                             clus
vv                                            19Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                9
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     0
  CURRENT SMOKER                                             6
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            19Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 72
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      56
  CURRENT SMOKER                                              91
  LIFELONG NON-SMOKER                                         62
D74V11, continuous

Clustering(75) Variable = 20p loss mutation analysis
D75V1, survival
                    sevent
clus2                  0   1
  20P LOSS MUTATED    13   7
  20P LOSS WILD-TYPE 172 114
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                20                286 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 7                114 
$`20P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5555 TCGA-BA-6871 TCGA-BA-6873 
       15.16        13.64        37.28         6.12         2.07         3.72 
TCGA-BB-4227 TCGA-BB-7866 TCGA-CN-6011 TCGA-CN-6992 TCGA-CN-6995 TCGA-CR-6473 
        4.37        20.98         7.50         2.73         3.68        36.99 
TCGA-CR-7364 TCGA-CR-7374 TCGA-CV-5440 TCGA-CV-7104 TCGA-CV-7247 TCGA-CV-7418 
       47.18         0.99        89.82        12.89        18.97        25.94 
TCGA-D6-6823 TCGA-DQ-7590 
        7.82        21.73 

$`20P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
        9.30         9.07         8.15         6.25        27.78        57.90 
TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 
        5.88         7.96        53.75        57.44         5.00         8.02 
TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       14.79        12.99         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.60        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       37.87        14.04        14.33         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        5.82         3.91         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       33.80        10.42        11.21         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 
       26.76        33.07        16.70        22.78        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       34.52        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
        9.27        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 
        3.06        24.95        29.23        31.96        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       17.95        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        13.32        24.43         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        5.23         1.84        52.31        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 
      114.94        56.68         4.73        47.47        36.00        31.33 
TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       26.20        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
        2.10        36.13        18.41        58.06        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 
        7.76        27.22        13.25        10.68         8.22         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        5.00         5.03         4.18        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 
       15.68        18.02        14.04        18.90        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 
       12.13        12.10        10.65         1.15         0.46         0.99 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
       22.75         5.26         4.01         3.72 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              0.99               0.07 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             89.82             210.94 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
            13.265             14.330 
[1] "1.0 - 89.8 (13.3)"  "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
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  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D75V2, continuous
D75V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      3   17
  20P LOSS WILD-TYPE   81  208
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  FEMALE                3                 81
  MALE                 17                208
D75V4, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  T1                0                 25
  T2                3                 74
  T3                4                 59
  T4                7                 94
D75V5, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  N0                6                 96
  N1                0                 32
  N2                8                 90
  N3                0                  5
D75V6, multiclass
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  I                  0                 18
  II                 1                 46
  III                2                 40
  IV                11                143
D75V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      4   16
  20P LOSS WILD-TYPE   72  217
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                 4                 72
  YES               16                217
D75V8, continuous
D75V9, continuous
D75V10, multiclass
                                             clus
vv                                            20P LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                7
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     2
  CURRENT SMOKER                                             9
  LIFELONG NON-SMOKER                                        2
                                             clus
vv                                            20P LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 74
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      54
  CURRENT SMOKER                                              88
  LIFELONG NON-SMOKER                                         62
D75V11, continuous

Clustering(76) Variable = 20q loss mutation analysis
D76V1, survival
                    sevent
clus2                  0   1
  20Q LOSS MUTATED     7   2
  20Q LOSS WILD-TYPE 178 119
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 9                297 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                119 
$`20Q LOSS MUTATED`
TCGA-BA-6871 TCGA-BB-7866 TCGA-CN-5360 TCGA-CR-6473 TCGA-CR-7402 TCGA-CV-5440 
        2.07        20.98        28.47        36.99        29.92        89.82 
TCGA-CV-7247 TCGA-CV-7418 TCGA-DQ-7590 
       18.97        25.94        21.73 

$`20Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 
       53.75        57.44         5.00         8.02        14.79        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       37.87        14.04        14.33         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       12.39         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
        4.21        14.96        26.76        33.07        16.70        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       50.01        39.52        34.52        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
        0.99        31.96        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
        5.92        35.41        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 
      108.33        47.28        19.20        17.95        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 
        4.73        47.47        36.00        31.33        26.20        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        58.06        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        22.85        25.02         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        5.03         4.18        37.78        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       18.02        14.04        18.90        11.84         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 
       12.10        10.65         1.15         0.46         0.99         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 
        0.16         0.82         1.02         1.81         1.45        22.75 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              2.07               0.07 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             89.82             210.94 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             25.94              13.64 
[1] "2.1 - 89.8 (25.9)"  "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
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"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
[1] "hr=" "2.5"
D76V2, continuous
D76V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      0    9
  20Q LOSS WILD-TYPE   84  216
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  FEMALE                0                 84
  MALE                  9                216
D76V4, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  T1                0                 25
  T2                0                 77
  T3                1                 62
  T4                3                 98
D76V5, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  N0                2                100
  N1                0                 32
  N2                2                 96
  N3                0                  5
D76V6, multiclass
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  I                  0                 18
  II                 0                 47
  III                1                 41
  IV                 3                151
D76V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      2    7
  20Q LOSS WILD-TYPE   74  226
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                 2                 74
  YES                7                226
D76V8, continuous
D76V9, continuous
D76V10, multiclass
                                             clus
vv                                            20Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                4
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     1
  CURRENT SMOKER                                             3
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            20Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 77
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      55
  CURRENT SMOKER                                              94
  LIFELONG NON-SMOKER                                         63
D76V11, continuous

Clustering(77) Variable = 21q loss mutation analysis
D77V1, survival
                    sevent
clus2                  0   1
  21Q LOSS MUTATED    32  21
  21Q LOSS WILD-TYPE 153 100
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                53                253 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                21                100 
$`21Q LOSS MUTATED`
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6871 TCGA-BB-7862 TCGA-BB-7864 TCGA-CN-4737 
       53.75         5.00         2.07        17.59        23.61         7.89 
TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-6010 TCGA-CN-6994 TCGA-CN-6997 TCGA-CQ-5323 
        8.28        11.54         6.81         3.91         3.29        48.16 
TCGA-CQ-5326 TCGA-CQ-5330 TCGA-CQ-5332 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6225 
        2.93        29.46        10.42        32.35        34.75        13.25 
TCGA-CQ-7065 TCGA-CR-5247 TCGA-CR-6491 TCGA-CR-7365 TCGA-CR-7369 TCGA-CR-7388 
       33.07        11.77        11.51        39.12        35.84        27.02 
TCGA-CR-7399 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
        5.92        17.95        89.82        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6934 TCGA-CV-6941 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 
       40.96         2.14        11.24         7.13         8.38         2.50 
TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7097 TCGA-CV-7103 TCGA-CV-7180 TCGA-CV-7242 
        4.14       126.12        12.66        52.31        10.75        36.00 
TCGA-CV-7245 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7409 TCGA-CV-7435 TCGA-CX-7082 
       26.20        47.97        36.13        17.82       142.49        10.39 
TCGA-CX-7086 TCGA-D6-6516 TCGA-DQ-5629 TCGA-HD-7229 TCGA-HD-7753 
        7.76        10.68        16.96         0.07         0.16 

$`21Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        37.28         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44         8.02        14.79        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       10.19        13.87        20.98        37.87        14.04        14.33 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5366 
        9.50         5.69        12.39        28.47        16.21        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 
       11.57        12.49         8.52        13.58         9.01         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5324 
        5.82         2.73         3.68         3.75         1.51        39.68 
TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-5334 
       21.50        38.89        27.65        33.80        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       28.60        32.88        32.35         4.21        14.96        26.76 
TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       16.70        22.78        84.23        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 
        7.66        12.46        15.75         9.27        47.18        47.34 
TCGA-CR-7368 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       40.90         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       47.01        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.54         7.10         5.13        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       19.20        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-6433 TCGA-CV-6436 
       13.35        17.75        57.07        48.59        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
        5.88        90.08         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       21.86        26.43       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6960 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 
       28.31        64.80       111.12        18.81         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 
        5.23         1.84        12.89        21.76        71.21       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7248 
       56.68         4.73        47.47        31.33        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 
       95.34         4.96        11.87         2.10        18.41        58.06 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       35.54       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.02        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 
       19.73         7.13        16.60         6.38        21.99        10.55 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       27.22        13.25         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 
        5.03         4.18        37.78        34.78        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 
       14.04        18.90        21.73        11.84         9.83        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7754 
       12.10        10.65         1.15         0.46         0.99         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
        1.02         1.81         1.45        22.75         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              0.07               0.07 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
            142.49             210.94 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             12.66              14.33 
[1] "0.1 - 142.5 (12.7)" "0.1 - 210.9 (14.3)"
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
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"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D77V2, continuous
D77V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      9   44
  21Q LOSS WILD-TYPE   75  181
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  FEMALE                9                 75
  MALE                 44                181
D77V4, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  T1                3                 22
  T2               15                 62
  T3               15                 48
  T4               14                 87
D77V5, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  N0               17                 85
  N1                3                 29
  N2               18                 80
  N3                4                  1
D77V6, multiclass
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  I                  3                 15
  II                 8                 39
  III                8                 34
  IV                28                126
D77V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     13   40
  21Q LOSS WILD-TYPE   63  193
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO                13                 63
  YES               40                193
D77V8, continuous
D77V9, continuous
D77V10, multiclass
                                             clus
vv                                            21Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               14
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    10
  CURRENT SMOKER                                            18
  LIFELONG NON-SMOKER                                        9
                                             clus
vv                                            21Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 67
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      46
  CURRENT SMOKER                                              79
  LIFELONG NON-SMOKER                                         55
D77V11, continuous

Clustering(78) Variable = 22q loss mutation analysis
D78V1, survival
                    sevent
clus2                  0   1
  22Q LOSS MUTATED    16   8
  22Q LOSS WILD-TYPE 169 113
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                24                282 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 8                113 
$`22Q LOSS MUTATED`
TCGA-BA-5149 TCGA-BA-5558 TCGA-BA-6871 TCGA-BB-4224 TCGA-BB-7861 TCGA-CN-4725 
        8.15        53.75         2.07         9.04        10.19        10.19 
TCGA-CN-4730 TCGA-CN-5370 TCGA-CN-6995 TCGA-CQ-7065 TCGA-CR-6493 TCGA-CR-7373 
       11.28         8.52         3.68        33.07         9.27        29.23 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CV-5973 TCGA-CV-6441 TCGA-CV-6962 TCGA-CV-7413 
        5.13         5.92        57.07         5.88         4.14         9.67 
TCGA-CV-7421 TCGA-CX-7086 TCGA-DQ-5631 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-IQ-7630 
        0.07         7.76        18.02         9.83        12.13         5.26 

$`22Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         9.07         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 
       27.78        57.90         6.12         5.88         7.96        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        5.00         8.02        14.79        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7862 
        6.12        95.05         4.60         4.37        18.31        17.59 
TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 
       13.87        23.61        20.98        37.87        14.04        14.33 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
        6.31        13.55         4.67         6.38        10.68         5.46 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.84        11.57        12.49        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 
        1.38         5.82         2.73         3.91         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 TCGA-CQ-5334 
       27.65        29.46        33.80        10.42        11.21         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CR-5243 
        4.21        14.96        26.76        16.70        22.78        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       11.51        15.75        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 
       35.84         3.42         3.06        24.95         0.99        31.96 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
       29.52        30.54         7.10        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       17.06        13.35        17.75        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 
       43.23        40.96        13.32        24.43        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
        8.38        28.31         2.50        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 
       56.68         4.73        47.47        36.00        31.33        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 
        2.10        36.13        18.41        58.06        35.54        17.82 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
      210.94        89.33         0.46        22.85        25.02        25.94 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 
       16.60         6.38        21.99        10.39        10.55        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        5.03         4.18        37.78        34.78        16.96        15.68 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7594 TCGA-DQ-7595 
       14.04        18.90        21.73        11.84        12.10        10.65 
TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        1.15         0.46         0.99         0.07         0.16         0.82 
TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 
        1.02         1.81         1.45        22.75         4.01         3.72 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              0.07               0.07 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
             57.07             210.94 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
             9.155             15.420 
[1] "0.1 - 57.1 (9.2)"   "0.1 - 210.9 (15.4)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
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"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-7861         TCGA-BB-7862         TCGA-BB-7863 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-7864         TCGA-BB-7866         TCGA-BB-7870 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-7871         TCGA-BB-7872         TCGA-CN-4722 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4723         TCGA-CN-4725         TCGA-CN-4726 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4727         TCGA-CN-4728         TCGA-CN-4729 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4730         TCGA-CN-4731         TCGA-CN-4733 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4735         TCGA-CN-4736         TCGA-CN-4737 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4738         TCGA-CN-4739         TCGA-CN-4740 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4741         TCGA-CN-4742         TCGA-CN-5355 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5356         TCGA-CN-5358         TCGA-CN-5359 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5360         TCGA-CN-5363         TCGA-CN-5364 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5365         TCGA-CN-5366         TCGA-CN-5367 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5369         TCGA-CN-5370         TCGA-CN-5373 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5374         TCGA-CN-6010         TCGA-CN-6011 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6012         TCGA-CN-6013         TCGA-CN-6016 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6017         TCGA-CN-6018         TCGA-CN-6019 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6020         TCGA-CN-6021         TCGA-CN-6022 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6023         TCGA-CN-6024         TCGA-CN-6988 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6989         TCGA-CN-6992         TCGA-CN-6994 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6995         TCGA-CN-6996         TCGA-CN-6997 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6998         TCGA-CQ-5323         TCGA-CQ-5324 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5325         TCGA-CQ-5326         TCGA-CQ-5327 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5329         TCGA-CQ-5330         TCGA-CQ-5331 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5332         TCGA-CQ-5333         TCGA-CQ-5334 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7067         TCGA-CQ-7068 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-5243         TCGA-CR-5247         TCGA-CR-5248 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-5249         TCGA-CR-5250         TCGA-CR-6467 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6470         TCGA-CR-6471         TCGA-CR-6472 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6473         TCGA-CR-6474         TCGA-CR-6477 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6478         TCGA-CR-6480         TCGA-CR-6481 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6482         TCGA-CR-6484         TCGA-CR-6487 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6488         TCGA-CR-6491         TCGA-CR-6492 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6493         TCGA-CR-7364         TCGA-CR-7365 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7367         TCGA-CR-7368         TCGA-CR-7369 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7370         TCGA-CR-7371         TCGA-CR-7372 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7373         TCGA-CR-7374         TCGA-CR-7376 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7243         TCGA-CV-7245         TCGA-CV-7247 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7248         TCGA-CV-7250         TCGA-CV-7252 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7253         TCGA-CV-7254         TCGA-CV-7255 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7261         TCGA-CV-7263         TCGA-CV-7406 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7407         TCGA-CV-7409         TCGA-CV-7410 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7589         TCGA-DQ-7590 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-7591         TCGA-DQ-7592         TCGA-DQ-7593 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-DQ-7594         TCGA-DQ-7595         TCGA-F7-7848 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-F7-8298         TCGA-H7-7774         TCGA-HD-7229 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-HD-7917 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-8224         TCGA-HD-8314         TCGA-HL-7533 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IQ-7630         TCGA-IQ-7631         TCGA-IQ-7632 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D78V2, continuous
D78V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      4   20
  22Q LOSS WILD-TYPE   80  205
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  FEMALE                4                 80
  MALE                 20                205
D78V4, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  T1                1                 24
  T2                6                 71
  T3                7                 56
  T4                5                 96
D78V5, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  N0                9                 93
  N1                5                 27
  N2                4                 94
  N3                0                  5
D78V6, multiclass
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  I                  0                 18
  II                 5                 42
  III                5                 37
  IV                 9                145
D78V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      5   19
  22Q LOSS WILD-TYPE   71  214
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO                 5                 71
  YES               19                214
D78V8, continuous
D78V9, continuous
D78V10, multiclass
                                             clus
vv                                            22Q LOSS MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                5
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     3
  CURRENT SMOKER                                             9
  LIFELONG NON-SMOKER                                        7
                                             clus
vv                                            22Q LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 76
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      53
  CURRENT SMOKER                                              88
  LIFELONG NON-SMOKER                                         57
D78V11, continuous

Clustering(79) Variable = Xq loss mutation analysis
D79V1, survival
                   sevent
clus2                 0   1
  XQ LOSS MUTATED     4   4
  XQ LOSS WILD-TYPE 181 117
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                8               298 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                4               117 
$`XQ LOSS MUTATED`
TCGA-BA-4078 TCGA-CN-4725 TCGA-CQ-6218 TCGA-CR-7383 TCGA-CR-7390 TCGA-CR-7398 
        9.07        10.19        28.60        17.13        29.82         5.13 
TCGA-CV-7255 TCGA-CV-7432 
        2.10        84.49 

$`XQ LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        13.64        37.28         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 TCGA-BB-7864 
        4.37        18.31        10.19        17.59        13.87        23.61 
TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-CN-4722 TCGA-CN-4723 
       20.98        37.87        14.04        14.33         6.31        13.55 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
       38.89        27.65        29.46        33.80        10.42        11.21 
TCGA-CQ-5334 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
        4.21        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 
        4.21        14.96        26.76        33.07        16.70        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23         0.99        31.96        34.06        19.92        26.17 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 
       32.78        47.01        27.02        12.89        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 
       29.85        29.52        30.54         7.10         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.92        48.36       135.29        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       47.28        19.20        17.95        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 
        4.73        47.47        36.00        31.33        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       17.10        95.34         4.96        11.87        47.97        36.13 
TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       18.41        58.06        35.54        17.82       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
        3.48        16.27        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        5.03         4.18        37.78        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7592 
       18.02        14.04        18.90        21.73        11.84         9.83 
TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 
       12.13        12.10        10.65         1.15         0.46         0.99 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7917 TCGA-HD-8224 TCGA-HD-8314 
        0.07         0.16         0.82         1.02         1.81         1.45 
TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
       22.75         5.26         4.01         3.72 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             2.10              0.07 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            84.49            210.94 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
           13.660            14.185 
[1] "2.1 - 84.5 (13.7)"  "0.1 - 210.9 (14.2)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-BB-7861 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7862        TCGA-BB-7863        TCGA-BB-7864        TCGA-BB-7866 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BB-7870        TCGA-BB-7871        TCGA-BB-7872        TCGA-CN-4722 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5333        TCGA-CQ-5334        TCGA-CQ-6218 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-6225        TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CQ-7065        TCGA-CQ-7067        TCGA-CQ-7068        TCGA-CR-5243 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-5247        TCGA-CR-5248        TCGA-CR-5249        TCGA-CR-5250 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6467        TCGA-CR-6470        TCGA-CR-6471        TCGA-CR-6472 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6473        TCGA-CR-6474        TCGA-CR-6477        TCGA-CR-6478 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6480        TCGA-CR-6481        TCGA-CR-6482        TCGA-CR-6484 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6487        TCGA-CR-6488        TCGA-CR-6491        TCGA-CR-6492 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-6493        TCGA-CR-7364        TCGA-CR-7365        TCGA-CR-7367 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7368        TCGA-CR-7369        TCGA-CR-7370        TCGA-CR-7371 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7372        TCGA-CR-7373        TCGA-CR-7374        TCGA-CR-7376 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7379        TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-7385        TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7390        TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CR-7394        TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CR-7399        TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5435        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7243 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7245        TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7252        TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CV-7261        TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7409        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7589        TCGA-DQ-7590 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-DQ-7593        TCGA-DQ-7594 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DQ-7595        TCGA-F7-7848        TCGA-F7-8298        TCGA-H7-7774 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-7229        TCGA-HD-7753        TCGA-HD-7754        TCGA-HD-7917 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HD-8224        TCGA-HD-8314        TCGA-HL-7533        TCGA-IQ-7630 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IQ-7631        TCGA-IQ-7632 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D79V2, continuous
D79V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      4    4
  XQ LOSS WILD-TYPE   80  221
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  FEMALE               4                80
  MALE                 4               221
D79V4, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  T1               1                24
  T2               3                74
  T3               1                62
  T4               2                99
D79V5, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  N0               6                96
  N1               0                32
  N2               1                97
  N3               0                 5
D79V6, multiclass
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  I                 1                17
  II                3                44
  III               0                42
  IV                3               151
D79V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      2    6
  XQ LOSS WILD-TYPE   74  227
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  NO                2                74
  YES               6               227
D79V8, continuous
D79V9, continuous
D79V10, multiclass
                                             clus
vv                                            XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3                78
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    0                56
  CURRENT SMOKER                                            3                94
  LIFELONG NON-SMOKER                                       2                62
D79V11, continuous
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
                           "PATHOLOGY.T" 
                                      V5 
                           "PATHOLOGY.N" 
                                      V6 
                           "TUMOR.STAGE" 
                                      V7 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V8 
                 "NUMBERPACKYEARSSMOKED" 
                                      V9 
                    "STOPPEDSMOKINGYEAR" 
                                     V10 
        "TOBACCOSMOKINGHISTORYINDICATOR" 
                                     V11 
             "YEAROFTOBACCOSMOKINGONSET" 
> q(save="no")
