
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_geneListPathwayEnrichmentReport.27.3301/geneListPathwayEnrichmentReport.R")
> result <- main("-l/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_geneListPathwayEnrichmentReport.27.3301/", "-m/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/303424/pathwayEnrich_cnvOrMut.txt", "-s/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/303424/pathwayEnrich_subclassMarker.txt", "-a/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/303424/genes_withMut.txt", "-b/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/303424/genes_withCNV_andHighExprCor.txt", "-n/xchip/tcga/Tools/Nozzle/v1.current")
> q(save="no")
